u5 small nuclear ribonucleoprotein 200 kda helicase, snap_masked-scaffold100_size373717-processed-gene-2.9 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. L. salmonis genes
Match: EMLSAG00000002206 (supercontig:LSalAtl2s:LSalAtl2s1412:46883:55835:1 gene:EMLSAG00000002206 transcript:EMLSAT00000002206 description:"maker-LSalAtl2s1412-augustus-gene-0.10") HSP 1 Score: 3231.04 bits (8376), Expect = 0.000e+0 Identity = 1532/2133 (71.82%), Postives = 1824/2133 (85.51%), Query Frame = 0
Query: 1 MADAAARSLQYEYKANSNLVLQADTRLIEKRGRDESTGEVISLTGKLLGTKMGDRAVRTRPTELKAQEEARAAKKAKARRGRDEQAVGLRAGQSVLAQDAAGLEGALYQPKTAETRQTYEVLLSFIQEALGDQPRDILQGAVDEVLLTLKNSGTKDRDKKGETESLLGASLSEERFALLVNLGKKITDFALEGREEEGGTKAAGEDIDETYGINVQFQDSEEEASEEEEEAADGDEAEDEEMVQAPDTGRSGLRVDKDEEGQSRQTRSALHPSDIDAHWLQRELSKYFPDANVSQQKSKEVLEVLERAMDKRECENKLVLLLGYDCFDFIKILVTNKNMIVYSIRLKLCRNEEEQEKLMAEMRQSKTLSKMLDMLEGNQVTEAAKERKAAKPSLEIEEIPVQPA------LQILNLEELAFAKGSHFRANKRCQLPEGSFRKQEKGYEEVHVPALKPKALGDNEVNVAIESLPVYVRPAFEGYQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKSQVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQLLKPNLSEIELFRIFSLSGEFKHIGVRDEEKLELHKLMERVPIPVKESVEEPSAKINILLQAYISHLQFDGFALMSDMVFVTQSASRLLRAIFEIVLVHGWAQLADKTLSLCKMIDRRLWQSMSPLRQFKKIPMDIIKKIEKKNFSFERFYDLGPNEIGELIRMPKLGKAIHKFIHQFPKLDLISHIQPITRSTLSIELTITPDFQWDDKAHGHSQGFWIFVEDVDSEVVLHHEFFLLKKSFSQDEHSVKMFVPIFEPLPPQYFIRVVSDRWIGSETVLPVSFRHLVLPEKNLPPTELLDLQPLPVTALRNEAFEGIYSNKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLRLFASD--SEVRCVYMAPLQAVAEIAYNEWHSKFSPLGMRTVLLTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKHSRRKPVIIYVPSRKQTRLTAIDILTFAAAESNPDCFLHADFDDIKGFVDKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPGQDVDAKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCIAIEDEMDTSPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIVASSAEFEDIPLRHGEEALLRSLSNRLPHKITSG-KFNDPHVKAQILVQAHLSRIQLSAELQQDAELIVSKAIRLIQACVDVLSSNGWLAPAIAAMELSQMVTQAMWNKESYLKQIPHLTQEVIERCVANNIDSVFDIVELEDSDRDKLLPLSADEMADVARFCNRYPNIEMNYTLVDKDRLASGDVVNVEVKLEREDEVTGPIIAPFFPTKREEGWWVVIGDPKSNTLLSIKRLTLQQKAKFKLDFVAPRVGKYNYTLFFMSDSYLGCDQEYKLSVEI 2124
MAD AAR+LQYEYKANSNLVLQAD RL EKRGRD +TGEV+SLTGKLLGTKMGDRA +T+P + +++ + K A + Y+PKT ET+ T+EVLLSF+ GDQP D+L+GA +E+LLTLKN K+++++ ETE LLG L++ER+ALLVNL KKITDF R+ + G E++DETYGINVQFQ+S+ E EE+E+ + + E+E ++ +SG + +K G S++ ++ LHP DIDAHWLQR+LSKYF DA VSQQ+SKEVL++L+ A+D+RECEN LVLLLGYDCF+FIKILV N+ MI Y K + ++E++ L+ +M ++ +L K+L LEG V ++ S +E + ++L+L E AF++GSHF ANKRCQLPEGS+RKQ+KGYEEVHVPALKPK E+ IE+LP Y + AF G+++LNRIQSKL+D CLNSD+NVLLCAPTGAGKTNVA+L +LREIGK VN DG+IRADEFKIIYVAPMKSLVQEMVG+F RL +++KVGELTGDSQMSKEQI+ TQ+IVCTPEKWDIITRKG ERT+TQLV+LII DEIHLLHD+RGPVLES+VAR+IR ME +Q +RLVGLSATLPNYQDVATFLRVN +TGLFYFDNSYRPV LEQQFIGITEKK +KR QLMNE+VF KVM AGKSQVL+FVHSRKET KT+RAL+DMCLE+DTLG FL+EGSASMEVLR+ESEQVKN +LKDLLPYGFAIHHAGM RVDR+LVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQ+Y+P+KG+W ELGALDVLQMLGRAGRPQ+DTKGEGILITNH+ELQFYLSL NQQLPVESQM+ KLPD+LNAEL+LGTIQ ++DAV WLGY+YLFVRMMRNPTLYGIP E+V++D KLE+FR +L+HTAA+ ++KSNL+KY+RK+G Q TELGRIASHYYC +ETMLT++QLLKP LSEIELFR+FSLSGEF+HI VR+EEKLEL KLMERVPIP+KES+EEPSAKINIL Q+YIS L+ +GF+LMSDMVFVTQSA RL+RAI+EIVL HGWAQLADK ++LCKM+DRR+WQSMSPLRQF+KIP++++KKIEKKNFSF+RFYD+GPNEIGEL+RMPKLGK IHK+IHQFPK+DL+SHIQP+TRSTLSIELT+TPDFQWD+K HGHS+GFWIFVEDVDSE++LH EF+LLK F+++EH +K+FVPIFEPLPPQYFIR+VSDRWI SETVLPVSFRHL+LPEKN+PPTELLDLQPLP+ ALR +E +YS +ITQFNP+QTQ FNVLYNS+DNVL+ APPGSGKTL E A+ RLF + RCVY+ P QA+AEI Y +WH +F+ LG +TV+LTGETSTDLKLIA+ ++I++TP+KWDVLSRRWKQRK+VQN+QLF+ DEIHL+GG GPV+E++CSRMRYISSQL+KPIRIVA G+S++N+KDLANWLG TN +FNFHPNVRP+PLEL++ GLNISHNASRLLAMA PV NA HS KP II+VPSRKQTRLTAI++LT+AAA+ PD FL AD +DIK FVDKI DKTL+ET+ QGV Y+HEGLS +DR V SLFD GA+Q+ V+SRSLCW NL A+LV+IMD Q+YSGKHHAYHDY +TDV+QMIG ANRP D DAKCVLLCQTSKK +FKKFLYEPLP+ESHLD LHDHFNAEIVTKTIENKQDAVDYLTWT +YRRLTQNPNYY MQG+SYRHLSDHLSE+VE TL++LEHSKCI+IED+MDTSPLNLGMIAAYYY NYTTIELFSMSLN+KTKIRGLIEIV++++EFE++P+RHGE+ LLR+LS++LP+K+ G KFNDPHVKA IL+QAHLSRIQLSAELQQD E++V KA+RLIQACVDVLSSNGWL+PAIAAMELSQMVTQAMW+KESYLKQIPH + EV+ERC +++++SVFDI+ELED DRDKLL +S +M DVARFCNRYPNIE+ Y ++ K L++G VN+EV+LEREDE+TGP+IAPFFP+KREEGWWV+IGDPK+NTLLSIKRLTLQQKAKFKLDFVAPR GKY+YTL+FMSDSYLGCDQEYK+S+EI
Sbjct: 1 MADQAARNLQYEYKANSNLVLQADLRLXEKRGRDXATGEVLSLTGKLLGTKMGDRAQKTKPQKSGSKKSKKGGKSGDAS------------------------DSLFYKPKTEETKSTFEVLLSFLSSFFGDQPEDVLKGAAEEILLTLKNDNLKEKERRKETEVLLGG-LNDERYALLVNLSKKITDF----RDSQVG--KLDEEVDETYGINVQFQESDSEEEEEDEDDEEDEVEEEEVEIERGAI-KSGDQFEKSN-GTSKK-KTELHPLDIDAHWLQRKLSKYFDDATVSQQRSKEVLDILKTAVDERECENHLVLLLGYDCFEFIKILVKNRVMITYCSLFKSAQTDDERDALIKKMSENSSLRKILRQLEGEDVDGDDSNSRSKSGSGRNKEQSRDASDRDAQEREVLDLTEYAFSQGSHFMANKRCQLPEGSYRKQKKGYEEVHVPALKPKEYDQGEILTPIETLPTYAQGAFPGFKTLNRIQSKLADICLNSDENVLLCAPTGAGKTNVAMLTILREIGKRVNSDGTIRADEFKIIYVAPMKSLVQEMVGNFGSRLEAYHLKVGELTGDSQMSKEQIAATQLIVCTPEKWDIITRKGSERTFTQLVKLIIFDEIHLLHDERGPVLESLVARSIRQMETTQGSIRLVGLSATLPNYQDVATFLRVNPRTGLFYFDNSYRPVPLEQQFIGITEKKAVKRFQLMNEIVFDKVMNHAGKSQVLIFVHSRKETGKTSRALRDMCLEKDTLGQFLREGSASMEVLRTESEQVKNAELKDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQVYNPEKGKWTELGALDVLQMLGRAGRPQYDTKGEGILITNHTELQFYLSLLNQQLPVESQMVTKLPDILNAELVLGTIQNVQDAVDWLGYSYLFVRMMRNPTLYGIPIESVKDDKKLERFRGNLIHTAALSIDKSNLIKYDRKSGNFQVTELGRIASHYYCTHETMLTYSQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERVPIPIKESIEEPSAKINILFQSYISQLKLEGFSLMSDMVFVTQSACRLIRAIYEIVLHHGWAQLADKAITLCKMVDRRMWQSMSPLRQFRKIPIEVVKKIEKKNFSFDRFYDIGPNEIGELLRMPKLGKTIHKYIHQFPKIDLLSHIQPVTRSTLSIELTLTPDFQWDEKIHGHSEGFWIFVEDVDSEIILHSEFYLLKHKFAEEEHVIKLFVPIFEPLPPQYFIRIVSDRWIASETVLPVSFRHLILPEKNIPPTELLDLQPLPINALREIKYEKLYS-EITQFNPIQTQAFNVLYNSNDNVLLCAPPGSGKTLAAELAIFRLFETSEGDGGRCVYVTPKQALAEIVYEDWHPRFATLGKKTVILTGETSTDLKLIAKSHVIVTTPDKWDVLSRRWKQRKHVQNVQLFICDEIHLLGGEDGPVIEIICSRMRYISSQLEKPIRIVALGASISNSKDLANWLGVSTNCSFNFHPNVRPVPLELHVTGLNISHNASRLLAMAXPVXNAXKXHSPSKPAIIFVPSRKQTRLTAIELLTYAAADDMPDRFLLADQNDIKSFVDKIDDKTLRETVNQGVAYIHEGLSTSDRKTVISLFDCGAIQIAVISRSLCWETNLNAHLVVIMDXQYYSGKHHAYHDYPMTDVMQMIGRANRPTVDSDAKCVLLCQTSKKGLFKKFLYEPLPVESHLDRSLHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRLTQNPNYYAMQGVSYRHLSDHLSELVETTLTDLEHSKCISIEDDMDTSPLNLGMIAAYYYTNYTTIELFSMSLNNKTKIRGLIEIVSAASEFENLPIRHGEDNLLRNLSHKLPNKLVGGAKFNDPHVKANILLQAHLSRIQLSAELQQDTEMVVGKAVRLIQACVDVLSSNGWLSPAIAAMELSQMVTQAMWSKESYLKQIPHFSGEVVERCKSSDVESVFDIMELEDEDRDKLLQMSDIQMGDVARFCNRYPNIELTYDIIHKHNLSAGSPVNIEVRLEREDEITGPVIAPFFPSKREEGWWVIIGDPKANTLLSIKRLTLQQKAKFKLDFVAPRQGKYHYTLYFMSDSYLGCDQEYKVSLEI 2098
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. L. salmonis genes
Match: EMLSAG00000009349 (supercontig:LSalAtl2s:LSalAtl2s598:348409:357028:-1 gene:EMLSAG00000009349 transcript:EMLSAT00000009349 description:"maker-LSalAtl2s598-snap-gene-3.8") HSP 1 Score: 1333.16 bits (3449), Expect = 0.000e+0 Identity = 742/1934 (38.37%), Postives = 1141/1934 (59.00%), Query Frame = 0
Query: 276 DAHWLQRELSKYF-----PDANVSQQKSKEVLEVLERAMDKRECENKLVLLLGYDCFDFIKILVTNKNMIVYSIR------------------------------LKLCRNEEEQEKLMAEM-RQSKTLSKMLDMLEGNQVTEAAKERKAAKPSLE---IEEIPV-------------QPALQILNLEELAFAKGSHFRANKRCQLPEGSFRKQEKGYEEVHVPALK--PKALGDNEVNVAIESLPVYVRPAFEGYQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKS-QVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQLLKPNLSEIELFRIFSLSGEFKHIGVRDEEKLELHKLMERVP--IPVKESVEEPSAKINILLQAYISHLQFDGFALMSDMVFVTQSASRLLRAIFEIVLVHGWAQLADKTLSLCKMIDRRLWQSMSPLRQFKKIPMDIIKKIEKKNFSFERFYDLGPNEIGELIRMPKLGKAIHKFIHQFPKLDLISHIQPITRSTLSIELTITPDFQWDDKAHGH-SQGFWIFVEDVDSEVVLHHEFFLL--KKSFSQDEHSVKMFVPIFEPLPPQYFIRVVSDRWIGSETVLPVSFRHLVLPEKNLPPTELLDLQPLPVTALRNEAFEGIYSNKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLRLFASDSEVRCVYMAPLQAVAEIAYNEWHSKFSP-LGMRTVLLTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKHSRRKPVIIYVPSRKQTRLTAIDILTFAAAESNPDCFLHADFDDIKGFV-DKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPG-QDVDAKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCI--AIEDEMDTSPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIVASSAEFEDIPLRHGEEALLRSLSNRLPHKITSGKFNDPHVKAQILVQAHLSRIQL-SAELQQDAELIVSKAIRLIQACVDVLSSNGWLAPAIAAMELSQMVTQAMWNKESYLKQIPHLTQ--EVIERCV-ANNIDSVFDIVELEDSDRDKLLPLSA--DE--MADVARFCNRYPNIEMNYTLVDKDRLASGDVVNV-EVKLEREDEVTGPIIAPFFPTKR-------EEGWWVVIGDPKS---NTLLSIKRLTLQQKAKF-KLDFVAP-RVGKYNYTLFFMSDSYLGCDQEYKLSVE 2123
+A WLQ ++ +++ P Q+ + +LEV+ E +N+L L+G+D D I +++ ++ + S R ++ + +E+++L +M ++ K + K + + ++ E + + A++ L ++ +PV QP+ + + + S F + LP G RK K +EEV++PA + P +G N + IE+L + F G +SLNRIQS + DT NS +N+L+CAPTGAGKTNVALL + + I ++ +G I+ D+FKI ELTGD Q++K +I +TQ++V TPEKWD++TRK + + QLVRL+IIDE+HLLH DRGPV+E++VART+R +E SQ +R+VGLSATLPNY DV+ FLRV+ GLF+FD +RP+ L Q FIG+ E K +K+ Q MNE+ + KV+ K QV+VFVH+R T KTA LK+ F E ++ + + + +N + +L G HHAGM R DR++VE LF+ I+VLV T+TLAWGVNLPAH VIIKGT+IY K +V++G LDVLQ+ GRAGRPQFD G GI++T+H +L YLSL Q P+ES I + D LNAE+ LGT+ T+E+A+ WL YTYLFVRM NP +YG+ + + +DP LE+ R +V A+ L+++ +++Y +T + T+LGR ASH+Y Y+T+ FN+ L+P ++E E+ + + + EF+ + VRDEE EL +L +PV E K+NIL+Q YIS F+L+SD +V +ASR++RA+FEIVL W LA + L L KMI+R++W S L+Q + +I+ K+E +N + E + +IG LI K G I + H+ P L +++QPITR+ + I LTITPDF+W+DK HG+ + FWI+VED ++ + HHE+ L K+ + + +PIFEPLP QY++R+ SD+W+GSETV PVSF+HL+LP+ + P T+LLDLQPLPV AL N FE +YS + FNP+QTQ F+ LY++D N+L+GAP GSGKT+ E AM ++F + + VY+APL+A+ + ++W + LG++ V LTG+ + D++ I +II+TPEKWD +SR W+ RK VQN+ L + DEIHL+G GPV+EVV SR +ISS ++ +RIV +++ANA+DLA+WL +NF P+VRP+PLE++I G H R+ M +P + I HS KP +I+V SR+QTRLTA+D++++ AAE +P +LH D+++ I D L+ TL G+G+ H GL + DR +VE L+ + +QVL+ + ++ WGVN +LVII T++Y GK Y D +TDVLQM+G A RP DV CV + KK+ +KKFLYEP P+ES L L DH NAEIV TI KQ+A+DY+TWT +RR+ +NP +YG++G+ + + L+EI++ + L++ C+ + E E S LG +A+YYY+++ T+ L ++ I ++ ++ E+ ++P+RH E+ + L+ LP ++ PH K +IL+ H S L +++ D + ++ ++IR++QA +D+ + G+L+ + QMV QA W+ ++ +P++ EV + V + + + + K L +A DE + ++ + P + +N +L D + G++ V E +E + + T R +GW++V+GD ++ L+++KR + K K +L F P + TL+ MSD+YLG D +Y + +E
Sbjct: 210 NAKWLQEKVIQFYGKESEPLGMSIQEFCQTLLEVITSKKSSDELQNELFELIGFDRIDLISLILEYRDEVTKSERDTKRFLIRELAXATTLSDAMTEHDKRPMYGCQVLVHSQEEKRLRKQMWKEEKKIGKAMKQMADDEYFEIEESKAASRAVLASTIMKPMPVLSTNNDFRKSASPQPSYPFVFDSKAVVKQTSGFIHGSKIALPVGFERKDHKKFEEVYIPASEKAPVDVGKNLI--PIETLDDIGQTVFNGIESLNRIQSIVFDTAYNSSENMLVCAPTGAGKTNVALLCITQTIKNFID-NGIIKKDKFKI-----------------------------ELTGDMQLTKSEILQTQMLVTTPEKWDVVTRKPGDVSLAQLVRLLIIDEVHLLHGDRGPVIEALVARTLRLVESSQTLIRIVGLSATLPNYIDVSRFLRVDPFKGLFFFDGRFRPIPLAQTFIGVKETKALKQSQDMNEICYDKVVEFLRKDKQVMVFVHARNATVKTALNLKESAQNHGHAALFEPENTSQLGIAMKALSKSRNKHIMELFQSGIGTHHAGMLRSDRNIVEKLFSQGLIKVLVCTATLAWGVNLPAHGVIIKGTEIYDAKKSSFVDIGILDVLQIFGRAGRPQFDKSGHGIILTSHDKLSLYLSLLTNQFPIESNFISLIADNLNAEVSLGTVSTVEEAINWLSYTYLFVRMRLNPLVYGLTHKQLNDDPLLEEKRREIVIEASQRLDRAKMVRYCERTSYLNSTDLGRTASHFYIKYDTVEIFNEHLRPIMNEREILTMITKAQEFEQLKVRDEELEELDELTRENCEMLPVAGGSENVHGKVNILIQTYISRGYVKSFSLVSDQGYVITNASRIVRALFEIVLRKNWPLLAGRLLKLSKMIERQMWDFESALKQHPHMKYEILSKLENRNINLENIRESNAKDIGHLIHHVKAGIDIKRCAHEVPLATLDAYLQPITRTVVRIRLTITPDFKWNDKIHGYVGESFWIWVEDPENNFIYHHEYITLTKKQVINIIPMELVFVIPIFEPLPTQYYLRLTSDKWLGSETVCPVSFKHLILPDHHPPHTDLLDLQPLPVKALNNPKFESLYS--FSHFNPIQTQIFHSLYHTDKNLLLGAPTGSGKTIAAEIAMFKVFRDYPKGKVVYIAPLKALVKERLSDWKIRLEKHLGLKVVELTGDVTPDIRAIESSTVIITTPEKWDGVSRSWQTRKYVQNVALIVIDEIHLLGSDRGPVLEVVVSRTNFISSHTERNLRIVGLSTALANARDLADWLNIDKVGLYNFRPSVRPVPLEVHINGYPGKHYCPRMATMXKPAYQXIRMHSPYKPSLIFVSSRRQTRLTALDLISYLAAEDDPKMWLHLGGDEMEQITRHSIKDLNLRLTLAFGIGFHHAGLVENDRKIVEELYVNQKIQVLIATSTVAWGVNFPTHLVIIKGTEYYDGKTKRYVDMPITDVLQMMGRAGRPQFDDVGVACVFV-HDVKKNFYKKFLYEPFPVESSLLGALPDHLNAEIVATTISTKQEALDYITWTYFFRRVIRNPAFYGLEGVDDSNFNSFLTEIIDKAIIVLQNYGCLDNSXEXESVLSASFLGKVASYYYLSHETVGLLKDTIKGDMSIDDVLGTLSDVKEYSELPVRHNEDTINTDLAANLPCNLSRLAMESPHTKVRILLAXHFSXQPLPNSDYNTDTKSVLDQSIRILQAMIDISADFGYLSSTLVIQTFMQMVVQARWDSDNATCILPYMESRDEVFFKNVPGGGLPGTIHCYKGDFNGLSKTLKGAAHLDEAKIREIHTILSNLPMMTVNLSLKD----SRGNIFPVGEDWIEVATDEEYLLCLXIKRTTRXPQTCICSKGWFLVLGDTEACIGGELVALKRXMVASKDKRDQLTFYTPVNPKRLILTLYIMSDTYLGLDHQYDIKLE 2104
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. L. salmonis genes
Match: EMLSAG00000002739 (supercontig:LSalAtl2s:LSalAtl2s158:521412:525573:-1 gene:EMLSAG00000002739 transcript:EMLSAT00000002739 description:"maker-LSalAtl2s158-augustus-gene-4.10") HSP 1 Score: 237.269 bits (604), Expect = 1.231e-65 Identity = 172/559 (30.77%), Postives = 269/559 (48.12%), Query Frame = 0
Query: 467 PVYVRPAFEG---YQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQ-ISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHD-DRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKSQVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQ---------LLKPNLSEI 1011
P + P F ++ N +QS + D L+S+ ++++ +PTG+GKT + LA++REI K+ N S KIIY+AP+K+L+ E + + I V E TGD + EQ + E +I+ TPEKWD+ITR+ +T+ + L++IDE+HLL+D DRG LE+++ R I+ + E VR + +SAT+PN +D+A +L K +FD RPV P+K+ +V+ + + + R + L ++ V + LKDLL G HHAG+ DR ++E +F + +LV T+TLA GVNLPAH VIIK GRAGRPQFDT +++T S +Y L +ES + +L + LN E++L I +A+ W +YL+VR+ +NP Y I FE+ + K+E L+ L K N++ + + G + +G + S + ++TM N +L NL EI
Sbjct: 61 PQELPPQFHNIFSFRFFNIMQSSVFDRILDSNNSLVVSSPTGSGKTVIFELAIVREIAKNSNGFKS------KIIYLAPIKALIAEKFREWKVKFEKVGISVLEFTGDFLGNDEQQLMEHDLILTTPEKWDVITRR---KTHKLELCLVLIDEVHLLNDKDRGHTLEAVICR-IKLIYF--ESVRFIAVSATIPNGEDIAIWLN---KGNYAFFDEDKRPV-------------PLKK---------------------IVYAYPKNKADLKLRPIPQ---------------------LSYYAKNVTDTKLKDLLQRGIGYHHAGLELQDRRVIEQMFLQGDLSILVCTTTLAQGVNLPAHLVIIK------------------------GRAGRPQFDTSATALILTQASNQNYYEKLVTGHNTIESCLHARLGEHLNTEIVLKNINNKYEAMKWAKISYLYVRVFKNPKPYNI-FESSQE--KIETKFEELILRTLDELNKINIISFNKSNGKLSSNIIGGVMSRFNIAFKTMKNLNDTNGGEDIPGILTKNLKEI 522 HSP 2 Score: 194.897 bits (494), Expect = 1.695e-51 Identity = 142/519 (27.36%), Postives = 243/519 (46.82%), Query Frame = 0
Query: 1316 FEGIYSNKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLRLFASDS---EVRCVYMAPLQAVAEIAYNEWHSKFSPLGMRTVLLTGE-TSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGT-IGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKHSRRKPVIIYVPSRKQTRLTAIDILTFAAAESNPDCFLHADFDDIKGFVDKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPGQDVDAKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCIAIEDEMDTSPLN-LGMIAAYYYINYTTIE 1828
F I+S + FN +Q+ F+ + +S++++++ +P GSGKT+ E A++R A +S + + +Y+AP++A+ + EW KF +G+ + TG+ D + + ++I++TPEKWDV++RR + + L + DE+HL+ G +E V R++ I + +R +A +++ N +D+A WL G A F+ + RP+PL +K V Y ++ +L I L++ A +TD LK+ L +G+GY H GL DR V+E +F G + +LV + +L GVNL A+LVII G A RP D A ++L Q S ++ ++K + IES L L +H N EIV K I NK +A+ + + +Y R+ +NP Y + S + E++ TL EL I+ N +G + + + I + T++
Sbjct: 68 FHNIFSFRF--FNIMQSSVFDRILDSNNSLVVSSPTGSGKTVIFELAIVREIAKNSNGFKSKIIYLAPIKALIAEKFREWKVKFEKVGISVLEFTGDFLGNDEQQLMEHDLILTTPEKWDVITRRKTHK---LELCLVLIDEVHLLNDKDRGHTLEAVICRIKLIYFE---SVRFIAVSATIPNGEDIAIWLNKGNYAFFD--EDKRPVPL--------------------------------KKIVYAYPKNKADLKLRPIPQLSYYAKN--------------------VTDTKLKDLLQRGIGYHHAGLELQDRRVIEQMFLQGDLSILVCTTTLAQGVNLPAHLVIIK------------------------GRAGRPQFDTSATALILTQASNQNYYEKLVTGHNTIESCLHARLGEHLNTEIVLKNINNKYEAMKWAKISYLYVRVFKNPKPYNIFESSQEKIETKFEELILRTLDELNKINIISFNKSNGKLSSNIIGGVMSRFNIAFKTMK 500
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. L. salmonis genes
Match: EMLSAG00000010310 (supercontig:LSalAtl2s:LSalAtl2s682:81241:89558:1 gene:EMLSAG00000010310 transcript:EMLSAT00000010310 description:"augustus_masked-LSalAtl2s682-processed-gene-0.9") HSP 1 Score: 139.428 bits (350), Expect = 4.514e-33 Identity = 134/479 (27.97%), Postives = 231/479 (48.23%), Query Frame = 0
Query: 496 QNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYT-QLVRLIIIDEIHLLHDD-RGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQ--QFIGITEKKPMKRHQLMNEVVFKK----------VMARAGKSQVLVFVHSRKETAKTARALKDMCL------------ERDTLGAFLKEGSASMEVLRSESEQVK------NNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQL-PVESQMIRKLPDMLNA-------ELILGTIQTMEDAV-TWLGYTYLFVRMMRNPT 933
+N++ APT AGKT VA + +L+ + ++ + K +++ P SL +E + S K L NI+V G SQ + ++ +I VCT EK + + + +E + + +I++DE+HL+ D RG +LE ++ + IR++ +Q +++VG+SATLPN +A +L + + +RP L + + + K + +++N + F K + VLVF ++ K A ++ E G+ L++ ++ L++ E +K + L + + A HHAG+ +R +VE+ F ++VLV+TSTL+ GVNLPA VI++ SP R + +L QM+GRAGR DT+GE IL +E L N +L V+S +++ D L + E+I G + +D V + T L + RN T
Sbjct: 88 RNLVYSAPTSAGKTLVAEILLLKRVIEY----------KKKGLFILPFVSLAREKMKSLQKLLGDSNIRVEGFMG-SQGPRGGLARAEIAVCTIEKANSLLNRAMEEGKGLESIGIIVVDELHLVGDSSRGYLLELMLTK-IRYI--AQNHIQIVGMSATLPNLDLIAEWLDAD------LYVTHFRPTPLTEMIKVDNVLYSKQFDKIKVLNSLSFIKNDSDYLVQLCLETVVDGHSVLVFCPTKSWCEKVAESIAKEFYNIGMPNNNPKSDESSKYGSLLRKELDGIK-LKATIENLKRTPAGLDGVLGKSIAFAVAFHHAGLTMDERDIVENSFKQGVLRVLVATSTLSSGVNLPARRVIVR-----SPFTYRNQLIDSLSYNQMIGRAGRKGIDTQGESILFCRENERLKVEELINSKLTSVKSCLVQIKGDDLCSSMKRAILEIIAGNVAKNKDEVHRYTSCTMLAASLRRNGT 540 HSP 2 Score: 95.1301 bits (235), Expect = 1.592e-19 Identity = 114/474 (24.05%), Postives = 207/474 (43.67%), Query Frame = 0
Query: 1344 NVLIGAPPGSGKTLCLEFAMLRLFASDSEVRCVYMAPLQAVAEIAYNEWHSKFSPLGMRTVLLTGETSTDLKLIARGNIIISTPEKWD-VLSRRWKQRKNVQNIQLFMADEIHLVG-GTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLE--------LY------IQGLN----ISHNASRLLAMARPVFNAITKHSRRKPVIIYVPSR----KQTRLTAIDILTFAAAESNPD--------CFLHADFDDI--KGFVDKIT------DKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVL---QMIGLANRPGQDVDAKCVLLCQTSKKDMFKKFLYEPL-PIESHLDHCLHDHFNA-------EIVTKTIENKQDAVD-YLTWTLMYRRLTQN 1765
N++ AP +GKTL E +L+ + + + +++ P ++A +R G L AR I + T EK + +L+R ++ K +++I + + DE+HLVG + G ++E++ +++RYI+ I+IV +++ N +A WL T + RP PL LY I+ LN I +++ L+ + + + HS V+++ P++ K A + +NP L + D I K ++ + D L +++ V + H GL+ +R +VE+ F G ++VLV + +L GVNL A VI+ Y + L D L QMIG A R G D + +L C+ +++ ++ + L ++S L D + EI+ + +D V Y + T++ L +N
Sbjct: 89 NLVYSAPTSAGKTLVAEILLLKRVI-EYKKKGLFILPFVSLAREKMKSLQKLLGDSNIRVEGFMGSQGPRGGL-ARAEIAVCTIEKANSLLNRAMEEGKGLESIGIIVVDELHLVGDSSRGYLLELMLTKIRYIAQN---HIQIVGMSATLPNLDLIAEWLDADLYVT-----HFRPTPLTEMIKVDNVLYSKQFDKIKVLNSLSFIKNDSDYLVQLC--LETVVDGHS----VLVFCPTKSWCEKVAESIAKEFYNIGMPNNNPKSDESSKYGSLLRKELDGIKLKATIENLKRTPAGLDGVLGKSIAFAVAFHHAGLTMDERDIVENSFKQGVLRVLVATSTLSSGVNLPARRVIVRSPFTYRNQ--------LIDSLSYNQMIGRAGRKGIDTQGESILFCRENERLKVEELINSKLTSVKSCLVQIKGDDLCSSMKRAILEIIAGNVAKNKDEVHRYTSCTMLAASLRRN 538
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. L. salmonis genes
Match: EMLSAG00000010131 (supercontig:LSalAtl2s:LSalAtl2s669:366808:370585:-1 gene:EMLSAG00000010131 transcript:EMLSAT00000010131 description:"maker-LSalAtl2s669-augustus-gene-3.12") HSP 1 Score: 102.834 bits (255), Expect = 7.321e-22 Identity = 115/430 (26.74%), Postives = 184/430 (42.79%), Query Frame = 0
Query: 492 LNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDD-RGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQ-FIGITEKKPMKRHQLMNEVV------FKKV--------------------------------------MARAGKSQVLVFVHSRKETAKTARALK--DMCLE--RDTLGAFLKEGSASMEVLRSESEQVKNNDLK--DLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILI 869
L +++V + A T AGKT VA A+ KH + + IY +P+K+L + FS VG +TGD+Q++ SE ++ T E + G + ++ +I DEIH ++D+ RG V E ++ H V ++ LSAT+PN + A ++ KK + RPV LE + G K +R +M+ +KK + R K V+ F SRK + A L D+C E R + F+ + + +L+ S++V K +LL G +HHAG+ + + LVE LF +++L +T T + G+N+P TVI I D + L + +QM GRAGR D+ G I++
Sbjct: 296 LEKNESVFVAAHTSAGKTVVAEYAVALS-QKH----------KTRAIYTSPIKALSNQKFREFSNEFK----DVGLITGDNQIN----SEASCLIMTTEVLRLFLYNG--SNIIRDLQYVIFDEIHYINDEQRGVVWEEVLILIPSH-------VIIIMLSATVPNTMEFADWVGRTKKKKINVISTFKRPVPLEHYLYTGNNAKTKDERFLIMDSSRKFCHDGYKKAVEAMNNRKKPSAKKNYGSWSAGLNPQQEKNIWITLIDHLNRQDKLPVVAFTLSRKRCDQNACMLTSLDLCTETERHNIHKFIND---HINILKG-SDRVLPQVCKVTELLKRGIGVHHAGILPILKELVEMLFQKGLVKLLFATETFSVGINMPTRTVIFDN--IKKNDGKEFRNLLPSEYIQMAGRAGRRGLDSTGTVIIL 691 HSP 2 Score: 84.3445 bits (207), Expect = 3.339e-16 Identity = 98/419 (23.39%), Postives = 177/419 (42.24%), Query Frame = 0
Query: 1342 DDNVLIGAPPGSGKTLCLEFAMLRLFASDSEVRCVYMAPLQAVAEIAYNEWHSKFSPLGMRTVLLTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNV-QNIQLFMADEIHLVGG-TIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNV-RPIPLELYI-QGLNISHNASRLLAM-------------ARPVFNAITKHSRRK-------------------------------PVIIYVPSRKQT-----RLTAIDILTFAAAESNPDCFLHADFDDIKGFVDKITDKTLK--ETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPGQDVDAKCVLLCQ 1705
+++V + A +GKT+ E+A+ + + R +Y +P++A++ + E+ ++F +G L+TG+ + + + +I T E VL N+ +++Q + DEIH + G V E V + I S + I+ +++ N + A+W+G N RP+PLE Y+ G N R L M A N K S +K PV+ + SRK+ LT++D+ T N F++ + +KG D++ + K E L +G+G H G+ + +VE LF G V++L + + G+N+ VI + + GK + + ++ +QM G A R G D ++L +
Sbjct: 299 NESVFVAAHTSAGKTVVAEYAVA--LSQKHKTRAIYTSPIKALSNQKFREFSNEFKDVG----LITGDNQIN----SEASCLIMTTE---VLRLFLYNGSNIIRDLQYVIFDEIHYINDEQRGVVWEEV---LILIPSH----VIIIMLSATVPNTMEFADWVGRTKKKKINVISTFKRPVPLEHYLYTGNNAKTKDERFLIMDSSRKFCHDGYKKAVEAMNNRKKPSAKKNYGSWSAGLNPQQEKNIWITLIDHLNRQDKLPVVAFTLSRKRCDQNACMLTSLDLCT-ETERHNIHKFINDHINILKG-SDRVLPQVCKVTELLKRGIGVHHAGILPILKELVEMLFQKGLVKLLFATETFSVGINMPTRTVIFDNIKKNDGKE--FRNLLPSEYIQMAGRAGRRGLDSTGTVIILVK 693
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. L. salmonis genes
Match: EMLSAG00000011402 (supercontig:LSalAtl2s:LSalAtl2s788:390074:395577:1 gene:EMLSAG00000011402 transcript:EMLSAT00000011402 description:"maker-LSalAtl2s788-augustus-gene-3.30") HSP 1 Score: 96.2857 bits (238), Expect = 6.168e-20 Identity = 143/578 (24.74%), Postives = 230/578 (39.79%), Query Frame = 0
Query: 423 ANKRCQLPEGSFRKQEKGYEEVHVPALKPKALGDNEVNVAIESLPVYVRPAFEG---------------YQSLNRIQSKLSDT--------------CLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGD---SQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHD-DRGPVLESIVARTIRHMEMSQEEVRLVGLSAT-------------LPNYQDVATFLRVNK--KTGLFYFD------NSYRPVSLEQQFI---------------GITEKKPMKRHQ--LMNEV-----------------------VFKKVMARAGKSQVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESE----QVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNA 902
+NKR P K E G ++ ++ +A GDN +++ +ES P + EG Y L+ ++S T C+ ++Q+VL+ A T AGKT A A+ + ++ ++IY P+K+L + F + + VG +TGD + M+ I T+I+ + I R+ V +I DEIH + D +RG V E + + + V V LSAT L N VA L+ + T +Y YRP L Q +I G+ ++ + L N + + K +M R + V+VF S+KE A + + + E + ++ SE + QV+N + LL G IHH G+ + + VE LF + I+ L +T T A G+N+PA TV+ GTQ + RW+ G + +QM GRAGR D KG IL+ + + V +++ LPD +N+
Sbjct: 49 SNKRTGSP---VDKDEAGSADLKRSKIEEEAEGDNALSL-VESAPRIRIQSLEGMVGCTHEVALPPGQDYIPLSPLKSNPYKTYAFALDSFQTQAIACIENNQSVLVSAHTSAGKTVTAEYAIALSL-----------KEKQRVIYTTPIKALSNQKYREFYEEFS----DVGLMTGDVTINPMASCLIMTTEILRSMLYRGSEIMRE---------VGWVIFDEIHYMRDSERGVVWEETII-------LLPDNVHCVFLSATIPNARQFVEWIXHLHNQVRVALLLQSHTFITTSSYYLXPCHVVYTDYRPTPL-QHYIFPSGGDGIHLVVDEFGVFKEDNFNQAMSVLQNAIGDSGAGDKKGKKGGMKPQNNCYKIVKMIMER-NFAPVIVFSFSKKECEAYALQMAKLDFNSAEEKKLVDEVFQNAMMVLSEEDRALPQVEN--VLPLLKRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPARTVLFTGTQKFDGKDFRWIRSG--EYIQMSGRAGRRGLDDKGIVILMVD----------EKMAPSVGKNIVKGLPDPINS 575
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. L. salmonis genes
Match: EMLSAG00000006227 (supercontig:LSalAtl2s:LSalAtl2s33:66072:71634:-1 gene:EMLSAG00000006227 transcript:EMLSAT00000006227 description:"maker-LSalAtl2s33-snap-gene-0.32") HSP 1 Score: 58.5362 bits (140), Expect = 2.235e-8 Identity = 51/179 (28.49%), Postives = 86/179 (48.04%), Query Frame = 0
Query: 480 LNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMS--KEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPN 656
L Q +S+TCL QN L+ PTG GKT +A + M P+G I+++AP K LV + + + + + V +TG++ ++ K+ S ++ TP+ +G+ T + ++ ++IDE H RG E + I+ + MS E R++ LSAT N
Sbjct: 74 LRSYQLSISETCLF--QNTLVSLPTGLGKTFIAAVVMYNFY--RWXPEGV-------IVFLAPTKPLVAQQIHACFNIMGIPAKDVAXMTGNNPVNSRKKDWSSKRVFFLTPQVLSNDLSRGLLPTSS--IKCVVIDEAHRA---RG---EYAYCQVIKELRMSGEYFRVIALSATPGN 233
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. L. salmonis genes
Match: EMLSAG00000008897 (supercontig:LSalAtl2s:LSalAtl2s554:399961:405648:-1 gene:EMLSAG00000008897 transcript:EMLSAT00000008897 description:"maker-LSalAtl2s554-augustus-gene-4.26") HSP 1 Score: 53.5286 bits (127), Expect = 6.399e-7 Identity = 30/95 (31.58%), Postives = 51/95 (53.68%), Query Frame = 0
Query: 2036 EVKLEREDEVTGPIIAPFFPTKREEGWWVVIGDPKSNTLLSIKRL--TLQQKAKFKLDFVA-PRVGKYNYTLFFMSDSYLGCDQEYKLSVEIKDV 2127
E LE + V+ + P+FP ++E WW I + K+ TL++ L +L KL A P+ G YN+T+ SDSY G D + + +++++
Sbjct: 621 EKALESKSRVSHSVHCPYFPDDKQEYWWCYISERKTRTLMTPPNLMTSLVDSEFVKLVLNAPPKPGPYNFTVCVRSDSYSGLDIQEDIKLDVQEA 715
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. SwissProt
Match: gi|33112469|sp|Q9VUV9.4|U520_DROME (RecName: Full=Putative U5 small nuclear ribonucleoprotein 200 kDa helicase; AltName: Full=Protein lethal (3) 72Ab) HSP 1 Score: 3100.07 bits (8036), Expect = 0.000e+0 Identity = 1458/2141 (68.10%), Postives = 1774/2141 (82.86%), Query Frame = 0
Query: 1 MADAAARSLQYEYKANSNLVLQADTRLIEKRGRDESTGEVISLTGKLLGTKMGDRAVRTRPTELKAQEEARAAKKAKARRGRDEQAVGLR--AGQSVLAQDAAGLEGALYQPKTAETRQTYEVLLSFIQEALGDQPRDILQGAVDEVLLTLKNSGTKDRDKKGETESLLGASLSEERFALLVNLGKKITDFALEGREEEGGTKAAGEDIDETYGINVQFQDSEEEASEEEEEAADGDEAEDEEMVQAPDTGRSGLRVDKDEEGQSRQTRSALHPSDIDAHWLQRELSKYFPDANVSQQKSKEVLEVLERAMDKRECENKLVLLLGYDCFDFIKILVTNKNMIVYSIRLKLCRNEEEQEKLMAEMRQSKTLSKMLDMLE-GNQVTEAAKERKAAK-------PSLEIEEIPVQPALQILNLEELAFAKGSHFRANKRCQLPEGSFRKQEKGYEEVHVPALKPKALGDNEVNVAIESLPVYVRPAFEGYQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKSQVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQLLKPNLSEIELFRIFSLSGEFKHIGVRDEEKLELHKLMERVPIPVKESVEEPSAKINILLQAYISHLQFDGFALMSDMVFVTQSASRLLRAIFEIVLVHGWAQLADKTLSLCKMIDRRLWQSMSPLRQFKKIPMDIIKKIEKKNFSFERFYDLGPNEIGELIRMPKLGKAIHKFIHQFPKLDLISHIQPITRSTLSIELTITPDFQWDDKAHGHSQGFWIFVEDVDSEVVLHHEFFLLKKSFSQDEHSVKMFVPIFEPLPPQYFIRVVSDRWIGSETVLPVSFRHLVLPEKNLPPTELLDLQPLPVTALRNEAFEGIYSNKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLRLFASDSEVRCVYMAPLQAVAEIAYNEWHSKFSPLGMRTVLLTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKHSRRKPVIIYVPSRKQTRLTAIDILTFAAAESNPDCFLHADFDDIKGFVDKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPGQDVDAKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCIAIEDEMDTSPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIVASSAEFEDIPLRHGEEALLRSLSNRLPHKI-----TSGKFNDPHVKAQILVQAHLSRIQLSAELQQDAELIVSKAIRLIQACVDVLSSNGWLAPAIAAMELSQMVTQAMWNKESYLKQIPHLTQEVIERCVANNIDSVFDIVELEDSDRDKLLPLSADEMADVARFCNRYPNIEMNYTLVDKDRLASGDVVNVEVKLEREDEVTGPIIAPFFPTKREEGWWVVIGDPKSNTLLSIKRLTLQQKAKFKLDFVAPRVGKYNYTLFFMSDSYLGCDQEYKLSVEIKD 2126
MADAAAR LQYEYKANSNLVLQAD RLIE+ RDE+TGEV SL GKL GT+MGDR RT+P + E R K+ K RDE G ++L++ + G +Y+PKT ETRQTYEVLLSFIQEALGDQPRDIL GA DE+L LKN KDR++K + +SLLGA +++ERFALLVNLGKKITDF + E IDETYGINVQF++SEEE+ + D+A+DE D + +E + + +LHP DIDA+WLQR LSK++ DA VSQ K+ +VL++L+ A D R+CEN+LVLLLGYDCFDFIK L N+ M++Y L + + E++++ +MR + L+K+L L+ G + E + +K V Q+L LEE+AF +GSHF ANKRCQLP+GS+RKQ KGYEEVHVPALKP NE ++ LP YV+P FEG+++LNRIQS+L L+SD+N+LLCAPTGAGKTNVALL M+REIGKH+N DG+I A +FKIIYVAPMKSLVQEMVG+F +RLA +N+ V ELTGD Q+++EQI+ TQ+IVCTPEKWDIITRKG ERT+ LVRL+IIDEIHLLHD+RGPVLE++VARTIR++E +QEEVRLVGLSATLPNYQDVATFLRV GLFYFDNSYRPVSLEQQ+IG+TEKK +KR Q+MNE+V++K M AG++QVLVFVHSRKET KTARA++DMCLE+DTLG+FLKEGSASMEVLR+E+EQVKN +LK+LLPYGFAIHHAGM RVDR+LVEDLFADRHIQVLVST+TLAWGVNLPAHTVIIKGTQ+Y+P+KGRWVEL ALDVLQMLGRAGRPQ+DTKGEGILITNHSELQFYLSL NQQLP+ESQ I KLPDMLNAE++LGT+Q ++DAV WLGYTYL++RM+RNPTLYG+ +A++ DP LE+ RA L+HTAA LE+S L+KY+RKTG Q T+LGRIASHYY +ETMLT+NQLLK LSEIELFR+FSLS EF+HI VR+EEKLEL KLMERVPIP+KES+EE SAK+N+LLQAYIS L+ +GFALMSDMVF+TQSA+RL+RAIFEIVL GWAQLADKTL+LCKMIDRR+WQSM+PLRQFKK+P +I KK+EKK+F + R YDL P+E+GELIR+PKLGK IHKF+HQFPKL+L +HIQPITR TL +ELTITPDFQWD+K HG S+GFW+ +EDVDSE++LHHEFFLLK+ +SQDEH +K FVP+FEPLPPQYF+R+VSDRWIG+ET LPVSFRHL+LPEKN+PPTELLDLQPLP++ALR FE YS + QFNP+QTQ FN +YNSD+NV +GAP GSGK EFA++RLF + S+ RCVY+ +A+A++ + +WHSKF L ++ V LTGET TDLKLIA+G ++I+T +KWDVLSRRWKQRKNVQ + LF+ DE+ LVGG GPV+E+VCSRMRYISSQ++K IRIVA +S+ +A+D+A WLGC NATFNFHP+VRPIPLEL+IQG N++HNA+R+ M++PV+NAI K+S KPVI++V SRKQ RLTAID+LT+AA++ P+ F HA+ +DIK F++++TDKTLKETL QGV YLHEGLS +D +VE LFDSGAVQV V+SR LCWG+++ A+LVIIMDTQFY+GK+H+Y DY +TDVLQMIG ANRP +D DAKCVL+CQ+SKKD FKKF+ EPLPIESHLDH +HDHFNAE+VTKTIENKQDAVDYLTWT +YRRLTQNPNYY +QG+++RHLSDHLSE+VE TLS+LE SKCI++ED+MDT PLNLGMIAAYYYINYTTIELFS+SLNSKTK+RGL+EI++S+AE+ED+ +RH EE +LR+LS RLP+K+ T+ KFNDPH+K +L+QAHLSR+QL ELQ D E I+SKAIRLIQACVDVLSSNGWL+PA+AAMEL+QMVTQAMW+K+SYLKQ+PH + E+++RC I++VFDI+ELED DR +LL LS +MADVARFCNRYPNIE+NY +VDKDR+ SG VNV V+LEREDEVTGP+IAPFFP KREEGWWVVIGDPK+N+LLSIKRLTLQQKAK KLDFVAP GK++YTL++MSDSYLGCDQEYK S+E+ D
Sbjct: 1 MADAAARQLQYEYKANSNLVLQADVRLIERPRRDEATGEVCSLVGKLDGTRMGDRYQRTKP----EKTEERKVKRQK----RDEAQYDFERMKGATLLSEGIDEMVGIVYRPKTQETRQTYEVLLSFIQEALGDQPRDILCGAADEILAVLKNDRLKDRERKKDIDSLLGA-VTDERFALLVNLGKKITDFGSDAVNALTAAPNNEEQIDETYGINVQFEESEEESDNDMYGEIRDDDAQDEGEEARIDHTLHAENLANEEAANNVKKERSLHPLDIDAYWLQRCLSKFYKDAMVSQSKAADVLKILKDAADDRDCENQLVLLLGYDCFDFIKQLKLNRQMVLYCTMLASAQTDSERQRIREKMRGNSALAKILRQLDTGKSEDQEEGEARGSKRGKGDAEDGGAAAAGQVAGVRQLLELEEMAFTQGSHFMANKRCQLPDGSYRKQRKGYEEVHVPALKPVPFDANEELQPVDKLPKYVQPVFEGFKTLNRIQSRLYKAALDSDENMLLCAPTGAGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSLVQEMVGNFGRRLACYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGERTFVSLVRLVIIDEIHLLHDERGPVLEALVARTIRNIETTQEEVRLVGLSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSLEQQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVLVFVHSRKETGKTARAVRDMCLEQDTLGSFLKEGSASMEVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQFYLSLLNQQLPIESQFISKLPDMLNAEIVLGTVQHLQDAVNWLGYTYLYIRMLRNPTLYGVSHDAIKADPLLEQHRADLLHTAACCLERSGLIKYDRKTGHFQVTDLGRIASHYYLTHETMLTYNQLLKQTLSEIELFRVFSLSSEFRHISVREEEKLELQKLMERVPIPIKESIEEHSAKVNVLLQAYISQLKLEGFALMSDMVFITQSAARLMRAIFEIVLTRGWAQLADKTLTLCKMIDRRMWQSMTPLRQFKKMPDEIAKKLEKKHFPWGRLYDLEPHELGELIRVPKLGKTIHKFVHQFPKLELSTHIQPITRGTLRVELTITPDFQWDEKVHGQSEGFWVLIEDVDSELILHHEFFLLKQKYSQDEHQLKFFVPVFEPLPPQYFLRIVSDRWIGAETQLPVSFRHLILPEKNMPPTELLDLQPLPISALRQPKFESFYSQRFPQFNPIQTQVFNAVYNSDENVFVGAPTGSGKMTIAEFAIMRLFTTQSDARCVYLVSEEALADLVFADWHSKFGSLDIKVVKLTGETGTDLKLIAKGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVGGEEGPVLEIVCSRMRYISSQIEKQIRIVALSASLTDARDVAQWLGCNPNATFNFHPSVRPIPLELHIQGYNVTHNATRIATMSKPVYNAILKYSAHKPVIVFVSSRKQARLTAIDVLTYAASDLQPNRFFHAEEEDIKPFLERMTDKTLKETLAQGVAYLHEGLSASDHRLVEQLFDSGAVQVAVISRDLCWGMSISAHLVIIMDTQFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAKCVLMCQSSKKDFFKKFINEPLPIESHLDHRMHDHFNAEVVTKTIENKQDAVDYLTWTFLYRRLTQNPNYYNLQGVTHRHLSDHLSELVENTLSDLEQSKCISVEDDMDTLPLNLGMIAAYYYINYTTIELFSLSLNSKTKVRGLLEIISSAAEYEDVVVRHHEEQVLRTLSQRLPNKLTGPNETAPKFNDPHIKTNLLLQAHLSRLQLGPELQGDTEQILSKAIRLIQACVDVLSSNGWLSPAVAAMELAQMVTQAMWSKDSYLKQLPHFSPEIVKRCTEKKIETVFDIMELEDEDRTRLLQLSDLQMADVARFCNRYPNIELNYEVVDKDRINSGSTVNVVVQLEREDEVTGPVIAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKVKLDFVAPSPGKHDYTLYYMSDSYLGCDQEYKFSIEVGD 2132
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. SwissProt
Match: gi|56405304|sp|O75643.2|U520_HUMAN (RecName: Full=U5 small nuclear ribonucleoprotein 200 kDa helicase; AltName: Full=Activating signal cointegrator 1 complex subunit 3-like 1; AltName: Full=BRR2 homolog; AltName: Full=U5 snRNP-specific 200 kDa protein; Short=U5-200KD) HSP 1 Score: 3039.98 bits (7880), Expect = 0.000e+0 Identity = 1440/2150 (66.98%), Postives = 1754/2150 (81.58%), Query Frame = 0
Query: 1 MADAAARSLQYEYKANSNLVLQADTRLIEKRGRDESTGEVISLTGKLLGTKMGDRAVRTRPTELKAQEEARAAKKAKARRGRDEQAVGLRAGQSVLAQDAAGLEGALYQPKTAETRQTYEVLLSFIQEALGDQPRDILQGAVDEVLLTLKNSGTKDRDKKGETESLLGASLSEERFALLVNLGKKITDFALEGREEEGGTKA---AGEDIDETYGINVQFQDSEEEA-----SEEEEEAADGDEAEDEEMVQAPDTGRSGLRVDKDEEGQSRQTRSA-LHPSDIDAHWLQRELSKYFPDANVSQQKSKEVLEVLERAMDKRECENKLVLLLGYDCFDFIKILVTNKNMIVYSIRLKLCRNEEEQEKLMAEMRQSKTLSKML---------DMLEGNQVTEAAKERKAAKPSLEIEEI-----PVQPALQILNLEELAFAKGSHFRANKRCQLPEGSFRKQEKGYEEVHVPALKPKALGDNEVNVAIESLPVYVRPAFEGYQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKSQVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQLLKPNLSEIELFRIFSLSGEFKHIGVRDEEKLELHKLMERVPIPVKESVEEPSAKINILLQAYISHLQFDGFALMSDMVFVTQSASRLLRAIFEIVLVHGWAQLADKTLSLCKMIDRRLWQSMSPLRQFKKIPMDIIKKIEKKNFSFERFYDLGPNEIGELIRMPKLGKAIHKFIHQFPKLDLISHIQPITRSTLSIELTITPDFQWDDKAHGHSQGFWIFVEDVDSEVVLHHEFFLLKKSFSQDEHSVKMFVPIFEPLPPQYFIRVVSDRWIGSETVLPVSFRHLVLPEKNLPPTELLDLQPLPVTALRNEAFEGIYSNKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLRLFASDSEVRCVYMAPLQAVAEIAYNEWHSKFSP-LGMRTVLLTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKHSRRKPVIIYVPSRKQTRLTAIDILTFAAAESNPDCFLHADFDDIKGFVDKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPGQDVDAKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCIAIEDEMDTSPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIVASSAEFEDIPLRHGEEALLRSLSNRLPHKITSGKFNDPHVKAQILVQAHLSRIQLSAELQQDAELIVSKAIRLIQACVDVLSSNGWLAPAIAAMELSQMVTQAMWNKESYLKQIPHLTQEVIERCVANNIDSVFDIVELEDSDRDKLLPLSADEMADVARFCNRYPNIEMNYTLVDKDRLASGDVVNVEVKLEREDEVTGPIIAPFFPTKREEGWWVVIGDPKSNTLLSIKRLTLQQKAKFKLDFVAPRVGKYNYTLFFMSDSYLGCDQEYKLSVEIKD 2126
MAD ARSLQYEYKANSNLVLQAD LI++ RDE TGEV+SL GKL GT+MGD+A RT+P + + + +R D + G ++L++ + G +Y+PKT ETR+TYEVLLSFIQ ALGDQPRDIL GA DEVL LKN +D++++ E + LLG + + R+ +LVNLGKKITD+ GG K ++IDETYG+NVQF+ EEE E EEA+D D DE +V R L + G+ ++ LHP DIDA WLQR+LS+++ DA VSQ+K+ EVLE+L+ A D RECEN+LVLLLG++ FDFIK+L ++ MI+Y L ++E E+E++M +M LSK L D++ + + LE ++ + P Q+L+LE+L F +GSHF ANKRCQLP+GSFR+Q KGYEEVHVPALKPK G E + +E LP Y + FEG+++LNRIQSKL L +D+N+LLCAPTGAGKTNVAL+ MLREIGKH+N DG+I D+FKIIY+APM+SLVQEMVGSF KRLA + I V ELTGD Q+ KE+IS TQIIVCTPEKWDIITRKG ERTYTQLVRLII+DEIHLLHDDRGPVLE++VAR IR++EM+QE+VRL+GLSATLPNY+DVATFLRV+ GLFYFDNS+RPV LEQ ++GITEKK +KR Q+MNE+V++K+M AGK+QVLVFVHSRKET KTARA++DMCLE+DTLG FL+EGSAS EVLR+E+EQ KN +LKDLLPYGFAIHHAGM RVDR+LVEDLFAD+HIQVLVST+TLAWGVNLPAHTVIIKGTQ+YSP+KGRW ELGALD+LQMLGRAGRPQ+DTKGEGILIT+H ELQ+YLSL NQQLP+ESQM+ KLPDMLNAE++LG +Q +DAV WLGY YL++RM+R+PTLYGI + ++ DP L++ R LVHTAA++L+K+NL+KY++KTG Q TELGRIASHYY +T+ T+NQLLKP LSEIELFR+FSLS EFK+I VR+EEKLEL KL+ERVPIPVKES+EEPSAKIN+LLQA+IS L+ +GFALM+DMV+VTQSA RL+RAIFEIVL GWAQL DKTL+LCKMID+R+WQSM PLRQF+K+P +++KKIEKKNF FER YDL NEIGELIRMPK+GK IHK++H FPKL+L H+QPITRSTL +ELTITPDFQWD+K HG S+ FWI VEDVDSEV+LHHE+FLLK ++QDEH + FVP+FEPLPPQYFIRVVSDRW+ ET LPVSFRHL+LPEK PPTELLDLQPLPV+ALRN AFE +Y +K FNP+QTQ FN +YNSDDNV +GAP GSGKT+C EFA+LR+ SE RCVY+ P++A+AE Y +W+ KF L + VLLTGETSTDLKL+ +GNIIISTPEKWD+LSRRWKQRKNVQNI LF+ DE+HL+GG GPV+EV+CSRMRYISSQ+++PIRIVA SS++NAKD+A+WLGC +TFNFHPNVRP+PLEL+IQG NISH +RLL+MA+PV++AITKHS +KPVI++VPSRKQTRLTAIDILT AA+ FLH D+ +++K++D TLKETL GVGYLHEGLS +R +VE LF SGA+QV+V SRSLCWG+N+ A+LVIIMDTQ+Y+GK HAY DY + DVLQM+G ANRP QD + +CV++CQ SKKD FKKFLYEPLP+ESHLDHC+HDHFNAEIVTKTIENKQDAVDYLTWT +YRR+TQNPNYY +QGIS+RHLSDHLSE+VE TLS+LE SKCI+IEDEMD +PLNLGMIAAYYYINYTTIELFSMSLN+KTK+RGLIEI++++AE+E+IP+RH E+ LLR L+ ++PHK+ + KFNDPHVK +L+QAHLSR+QLSAELQ D E I+SKAIRLIQACVDVLSSNGWL+PA+AAMEL+QMVTQAMW+K+SYLKQ+PH T E I+RC ++SVFDI+E+ED +R+ LL L+ ++ADVARFCNRYPNIE++Y +VDKD + SG V V V+LERE+EVTGP+IAP FP KREEGWWVVIGD KSN+L+SIKRLTLQQKAK KLDFVAP G +NYTL+FMSD+Y+GCDQEYK SV++K+
Sbjct: 1 MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKP------QMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFIQAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQT-DDTRYHVLVNLGKKITDY--------GGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVV------RCTLSANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDRECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFLYQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPR-QVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVDVKE 2128
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. SwissProt
Match: gi|81911255|sp|Q6P4T2.1|U520_MOUSE (RecName: Full=U5 small nuclear ribonucleoprotein 200 kDa helicase; AltName: Full=BRR2 homolog; AltName: Full=U5 snRNP-specific 200 kDa protein; Short=U5-200KD) HSP 1 Score: 3034.59 bits (7866), Expect = 0.000e+0 Identity = 1438/2150 (66.88%), Postives = 1755/2150 (81.63%), Query Frame = 0
Query: 1 MADAAARSLQYEYKANSNLVLQADTRLIEKRGRDESTGEVISLTGKLLGTKMGDRAVRTRPTELKAQEEARAAKKAKARRGRDEQAVGLRAGQSVLAQDAAGLEGALYQPKTAETRQTYEVLLSFIQEALGDQPRDILQGAVDEVLLTLKNSGTKDRDKKGETESLLGASLSEERFALLVNLGKKITDFALEGREEEGGTKA---AGEDIDETYGINVQFQDSEEEA-----SEEEEEAADGDEAEDEEMVQAPDTGRSGLRVDKDEEGQSRQTRSA-LHPSDIDAHWLQRELSKYFPDANVSQQKSKEVLEVLERAMDKRECENKLVLLLGYDCFDFIKILVTNKNMIVYSIRLKLCRNEEEQEKLMAEMRQSKTLSKML---------DMLEGNQVTEAAKERKAAKPSLEIEEI-----PVQPALQILNLEELAFAKGSHFRANKRCQLPEGSFRKQEKGYEEVHVPALKPKALGDNEVNVAIESLPVYVRPAFEGYQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKSQVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQLLKPNLSEIELFRIFSLSGEFKHIGVRDEEKLELHKLMERVPIPVKESVEEPSAKINILLQAYISHLQFDGFALMSDMVFVTQSASRLLRAIFEIVLVHGWAQLADKTLSLCKMIDRRLWQSMSPLRQFKKIPMDIIKKIEKKNFSFERFYDLGPNEIGELIRMPKLGKAIHKFIHQFPKLDLISHIQPITRSTLSIELTITPDFQWDDKAHGHSQGFWIFVEDVDSEVVLHHEFFLLKKSFSQDEHSVKMFVPIFEPLPPQYFIRVVSDRWIGSETVLPVSFRHLVLPEKNLPPTELLDLQPLPVTALRNEAFEGIYSNKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLRLFASDSEVRCVYMAPLQAVAEIAYNEWHSKFSP-LGMRTVLLTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKHSRRKPVIIYVPSRKQTRLTAIDILTFAAAESNPDCFLHADFDDIKGFVDKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPGQDVDAKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCIAIEDEMDTSPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIVASSAEFEDIPLRHGEEALLRSLSNRLPHKITSGKFNDPHVKAQILVQAHLSRIQLSAELQQDAELIVSKAIRLIQACVDVLSSNGWLAPAIAAMELSQMVTQAMWNKESYLKQIPHLTQEVIERCVANNIDSVFDIVELEDSDRDKLLPLSADEMADVARFCNRYPNIEMNYTLVDKDRLASGDVVNVEVKLEREDEVTGPIIAPFFPTKREEGWWVVIGDPKSNTLLSIKRLTLQQKAKFKLDFVAPRVGKYNYTLFFMSDSYLGCDQEYKLSVEIKD 2126
MAD ARSLQYEYKANSNLVLQAD LI++ RDE TGEV+SL GKL GT+MGD+A RT+P + + + +R D + G ++L++ + G +Y+PKT ETR+TYEVLLSFIQ ALGDQPRDIL GA DEVL LKN +D++++ E + LLG + + R+ +LVNLGKKITD+ GG K ++IDETYG+NVQF+ EEE E EEA+D D DE +V R L + G+ ++ LHP DIDA WLQR+LS+++ DA VSQ+K+ EVLE+L+ A D RECEN+LVLLLG++ FDFIK+L ++ MI+Y L ++E E+E+++ +M LSK L D++ + + LE ++ + P Q+L+LE+L F +GSHF ANKRCQLP+GSFR+Q KGYEEVHVPALKPK G E + +E LP Y + FEG+++LNRIQSKL L +D+N+LLCAPTGAGKTNVAL+ MLREIGKH+N DG+I D+FKIIY+APM+SLVQEMVGSF KRLA + I V ELTGD Q+ KE+IS TQIIVCTPEKWDIITRKG ERTYTQLVRLI++DEIHLLHDDRGPVLE++VAR IR++EM+QE+VRL+GLSATLPNY+DVATFLRV+ GLFYFDNS+RPV LEQ ++GITEKK +KR Q+MNE+V++K+M AGK+QVLVFVHSRKET KTARA++DMCLE+DTLG FL+EGSAS EVLR+E+EQ KN +LKDLLPYGFAIHHAGM RVDR+LVEDLFAD+HIQVLVST+TLAWGVNLPAHTVIIKGTQ+YSP+KGRW ELGALD+LQMLGRAGRPQ+DTKGEGILIT+H ELQ+YLSL NQQLP+ESQM+ KLPDMLNAE++LG +Q +DAV WLGY YL++RM+R+PTLYGI + ++ DP L++ R LVHTAA++L+K+NL+KY++KTG Q TELGRIASHYY +T+ T+NQLLKP LSEIELFR+FSLS EFK+I VR+EEKLEL KL+ERVPIPVKES+EEPSAKIN+LLQA+IS L+ +GFALM+DMV+VTQSA RL+RAIFEIVL GWAQL DKTL+LCKMID+R+WQSM PLRQF+K+P +++KKIEKKNF FER YDL NEIGELIRMPK+GK IHK++H FPKL+L H+QPITRSTL +ELTITPDFQWD+K HG S+ FWI VEDVDSEV+LHHE+FLLK ++QDEH + FVP+FEPLPPQYFIRVVSDRW+ ET LPVSFRHL+LPEK PPTELLDLQPLPV+ALRN AFE +Y +K FNP+QTQ FN +YNSDDNV +GAP GSGKT+C EFA+LR+ +SE RCVY+ P++A+AE Y +W+ KF L + VLLTGETSTDLKL+ +GNIIISTPEKWD+LSRRWKQRKNVQNI LF+ DE+HL+GG GPV+EV+CSRMRYISSQ+++PIRIVA SS++NAKD+A+WLGC +TFNFHPNVRP+PLEL+IQG NISH +RLL+MA+PV++AITKHS +KPVI++VPSRKQTRLTAIDILT AA+ FLH D+ +++K++D TLKETL GVGYLHEGLS +R +VE LF SGA+QV+V SRSLCWG+N+ A+LVIIMDTQ+Y+GK HAY DY + DVLQM+G ANRP QD + +CV++CQ SKKD FKKFLYEPLP+ESHLDHC+HDHFNAEIVTKTIENKQDAVDYLTWT +YRR+TQNPNYY +QGIS+RHLSDHLSE+VE TLS+LE SKCI+IEDEMD +PLNLGMIAAYYYINYTTIELFSMSLN+KTK+RGLIEI++++AE+E+IP+RH E+ LLR L+ ++PHK+ + KFNDPHVK +L+QAHLSR+QLSAELQ D E I+SKAIRLIQACVDVLSSNGWL+PA+AAMEL+QMVTQAMW+K+SYLKQ+PH T E I+RC ++SVFDI+E+ED +R+ LL L+ ++ADVARFCNRYPNIE++Y +VDKD + SG V V V+LERE+EVTGP+IAP FP KREEGWWVVIGD KSN+L+SIKRLTLQQKAK KLDFVAP G +NYTL+FMSD+Y+GCDQEYK SV++K+
Sbjct: 1 MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKP------QMQEERRAKRRKRDEDRHDMNKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFIQAALGDQPRDILCGAADEVLAVLKNEKLRDKERRREIDLLLGQT-DDTRYHVLVNLGKKITDY--------GGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVV------RCTLSANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDRECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEPEKERIVGKMEADPELSKFLYQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPR-QVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIVLDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGGHNYTLYFMSDAYMGCDQEYKFSVDVKE 2128
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. SwissProt
Match: gi|476007227|sp|F1LNJ2.1|U520_RAT (RecName: Full=U5 small nuclear ribonucleoprotein 200 kDa helicase; AltName: Full=BRR2 homolog; AltName: Full=U5 snRNP-specific 200 kDa protein; Short=U5-200KD) HSP 1 Score: 3034.59 bits (7866), Expect = 0.000e+0 Identity = 1440/2153 (66.88%), Postives = 1756/2153 (81.56%), Query Frame = 0
Query: 1 MADAAARSLQYEYKANSNLVLQADTRLIEKRGRDESTGEVISLTGKLLGTKMGDRAVRTRPTELKAQEEARAAKKAKARRGRDEQAVGLRAGQSVLAQDAAGLEGALYQPKTAETRQTYEVLLSFIQEALGDQPRDILQGAVDEVLLTLKNSGTKDRDKKGETESLLGASLSEERFALLVNLGKKITDFALEGREEEGGTKA---AGEDIDETYGINVQFQDSEEEA-----SEEEEEAADGDEAEDEEMVQAPDTGRSGLRVDKDEEGQSRQTRSA-LHPSDIDAHWLQRELSKYFPDANVSQQKSKEVLEVLERAMDKRECENKLVLLLGYDCFDFIKILVTNKNMIVYSIRLKLCRNEEEQEKLMAEMRQSKTLSKML---------DMLEGNQVTEAAKERKAAKPSLEIEEI-----PVQPALQILNLEELAFAKGSHFRANKRCQLPEGSFRKQEKGYEEVHVPALKPKALGDNEVNVAIESLPVYVRPAFEGYQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKSQVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQLLKPNLSEIELFRIFSLSGEFKHIGVRDEEKLELHKLMERVPIPVKESVEEPSAKINILLQAYISHLQFDGFALMSDMVFVTQSASRLLRAIFEIVLVHGWAQLADKTLSLCKMIDRRLWQSMSPLRQFKKIPMDIIKKIEKKNFSFERFYDLGPNEIGELIRMPKLGKAIHKFIHQFPKLDLISHIQPITRSTLSIELTITPDFQWDDKA---HGHSQGFWIFVEDVDSEVVLHHEFFLLKKSFSQDEHSVKMFVPIFEPLPPQYFIRVVSDRWIGSETVLPVSFRHLVLPEKNLPPTELLDLQPLPVTALRNEAFEGIYSNKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLRLFASDSEVRCVYMAPLQAVAEIAYNEWHSKFSP-LGMRTVLLTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKHSRRKPVIIYVPSRKQTRLTAIDILTFAAAESNPDCFLHADFDDIKGFVDKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPGQDVDAKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCIAIEDEMDTSPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIVASSAEFEDIPLRHGEEALLRSLSNRLPHKITSGKFNDPHVKAQILVQAHLSRIQLSAELQQDAELIVSKAIRLIQACVDVLSSNGWLAPAIAAMELSQMVTQAMWNKESYLKQIPHLTQEVIERCVANNIDSVFDIVELEDSDRDKLLPLSADEMADVARFCNRYPNIEMNYTLVDKDRLASGDVVNVEVKLEREDEVTGPIIAPFFPTKREEGWWVVIGDPKSNTLLSIKRLTLQQKAKFKLDFVAPRVGKYNYTLFFMSDSYLGCDQEYKLSVEIKD 2126
MAD ARSLQYEYKANSNLVLQAD LI++ RDE TGEV+SL GKL GT+MGD+A RT+P + + + +R D + G ++L++ + G +Y+PKT ETR+TYEVLLSFIQ ALGDQPRDIL GA DEVL LKN +D++++ E + LLG + + R+ +LVNLGKKITD+ GG K ++IDETYG+NVQF+ EEE E EEA+D D DE +V R L + G+ ++ LHP DIDA WLQR+LS+++ DA VSQ+K+ EVLE+L+ A D RECEN+LVLLLG++ FDFIK+L ++ MI+Y L ++E E+E++M +M LSK L D++ + + LE ++ + P Q+L+LE+L F +GSHF ANKRCQLP+GSFR+Q KGYEEVHVPALKPK G E + +E LP Y + FEG+++LNRIQSKL L +D+N+LLCAPTGAGKTNVAL+ MLREIGKH+N DG+I D+FKIIY+APM+SLVQEMVGSF KRLA + I V ELTGD Q+ KE+IS TQIIVCTPEKWDIITRKG ERTYTQLVRLI++DEIHLLHDDRGPVLE++VAR IR++EM+QE+VRL+GLSATLPNY+DVATFLRV+ GLFYFDNS+RPV LEQ ++GITEKK +KR Q+MNE+V++K+M AGK+QVLVFVHSRKET KTARA++DMCLE+DTLG FL+EGSAS EVLR+E+EQ KN +LKDLLPYGFAIHHAGM RVDR+LVEDLFAD+HIQVLVST+TLAWGVNLPAHTVIIKGTQ+YSP+KGRW ELGALD+LQMLGRAGRPQ+DTKGEGILIT+H ELQ+YLSL NQQLP+ESQM+ KLPDMLNAE++LG +Q +DAV WLGY YL++RM+R+PTLYGI + ++ DP L++ R LVHTAA++L+K+NL+KY++KTG Q TELGRIASHYY +T+ T+NQLLKP LSEIELFR+FSLS EFK+I VR+EEKLEL KL+ERVPIPVKES+EEPSAKIN+LLQA+IS L+ +GFALM+DMV+VTQSA RL+RAIFEIVL GWAQL DKTL+LCKMID+R+WQSM PLRQF+K+P +++KKIEKKNF FER YDL NEIGELIRMPK+GK IHK++H FPKL+L H+QPITRSTL +ELTITPDFQWD+KA HG S+ FWI VEDVDSEV+LHHE+FLLK ++QDEH + FVP+FEPLPPQYFIRVVSDRW+ ET LPVSFRHL+LPEK PPTELLDLQPLPV+ALRN AFE +Y +K FNP+QTQ FN +YNSDDNV +GAP GSGKT+C EFA+LR+ +SE RCVY+ P++A+AE Y +W+ KF L + VLLTGETSTDLKL+ +GNIIISTPEKWD+LSRRWKQRKNVQNI LF+ DE+HL+GG GPV+EV+CSRMRYISSQ+++PIRIVA SS++NAKD+A+WLGC +TFNFHPNVRP+PLEL+IQG NISH +RLL+MA+PV++AITKHS +KPVI++VPSRKQTRLTAIDILT AA+ FLH D+ +++K++D TLKETL GVGYLHEGLS +R +VE LF SGA+QV+V SRSLCWG+N+ A+LVIIMDTQ+Y+GK HAY DY + DVLQM+G ANRP QD + +CV++CQ SKKD FKKFLYEPLP+ESHLDHC+HDHFNAEIVTKTIENKQDAVDYLTWT +YRR+TQNPNYY +QGIS+RHLSDHLSE+VE TLS+LE SKCI+IEDEMD +PLNLGMIAAYYYINYTTIELFSMSLN+KTK+RGLIEI++++AE+E+IP+RH E+ LLR L+ ++PHK+ + KFNDPHVK +L+QAHLSR+QLSAELQ D E I+SKAIRLIQACVDVLSSNGWL+PA+AAMEL+QMVTQAMW+K+SYLKQ+PH T E I+RC ++SVFDI+E+ED +R+ LL L+ ++ADVARFCNRYPNIE++Y +VDKD + SG V V V+LERE+EVTGP+IAP FP KREEGWWVVIGD KSN+L+SIKRLTLQQKAK KLDFVAP G +NYTL+FMSD+Y+GCDQEYK SV++K+
Sbjct: 1 MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKP------QMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFIQAALGDQPRDILCGAADEVLAVLKNEKLRDKERRREIDLLLGQT-DDTRYHVLVNLGKKITDY--------GGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVV------RCTLSANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDRECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFLYQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPR-QVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIVLDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKARLVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGGHNYTLYFMSDAYMGCDQEYKFSVDVKE 2131
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. SwissProt
Match: gi|12230659|sp|Q9U2G0.1|U520_CAEEL (RecName: Full=Putative U5 small nuclear ribonucleoprotein 200 kDa helicase) HSP 1 Score: 2643.23 bits (6850), Expect = 0.000e+0 Identity = 1267/2165 (58.52%), Postives = 1658/2165 (76.58%), Query Frame = 0
Query: 1 MADAAARSLQYEYKANSNLVLQADTRLIEKRGRDESTGEVISLTGK-LLGTKMGDRAVRTR-PTELKAQEEARAAKKAKARRGRDEQAVGLRAGQSVLAQDAAGLEGALYQPKTAETRQTYEVLLSFIQEALGDQPRDILQGAVDEVLLTLKNSGTKDRDKKGETESLLGASLSEERFALLVNLGKKITDFALEGREEEGGTKAAGEDIDETYGINVQFQDSEEEASEEEEEAADGDEAEDEEMVQAPDTGRSG-LRVDKDEEGQSRQTRSALHPSDIDAHWLQRELSKYFPDANVSQQKSKEVLEVLERAMDKRECENKLVLLLGYDCFDFIKILVTNKNMIVYSIRLKLCRNEEEQEKLMAEMRQSKTLSKMLDML----EGNQVT------EAAKERKAAKPSLE-IEEIPVQPALQILNLEELAFAKGSHFRANKRCQLPEGSFRKQEKGYEEVHVPALKPKALGDNEVNVAIESLPVYVRPAFEGYQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKSQVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQLLKPNLSEIELFRIFSLSGEFKHIGVRDEEKLELHKLMERVPIPVKESVEEPSAKINILLQAYISHLQFDGFALMSDMVFVTQSASRLLRAIFEIVLVHGWAQLADKTLSLCKMIDRRLWQSMSPLRQFKKIPMDIIKKIEKKNFSFERFYDLGPNEIGELIRMPKLGKAIHKFIHQFPKLDLISHIQPITRSTLSIELTITPDFQWDDKAHGHSQGFWIFVEDVDSEVVLHHEFFLLKKSFSQDEHSVKMFVPIFEPLPPQYFIRVVSDRWIGSETVLPVSFRHLVLPEKNLPPTELLDLQPLPVTALRNEAFEGIYS-NKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLRLFASDSEVRCVYMAPLQAVAEIAYNEWHSKFSP-LGMRTVLLTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKHSRR---KPVIIYVPSRKQTRLTAIDILTFAAAESNPDCFLH-ADFDD-IKGFVDKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPGQDVDAKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCIAIEDEMDTSPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIVASSAEFEDIPLRHGEEALLRSLSNRLPHKITSGKFNDPHVKAQILVQAHLSRIQLSAELQQDAELIVSKAIRLIQACVDVLSSNGWLAPAIAAMELSQMVTQAMWNKESYLKQIPHLTQEVIERCVANNIDSVFDIVELEDSDRDKLLPLSADEMADVARFCNRYPNIEMNYTLVDKDRLASGDVVNVEVKLEREDEVTG---PIIAPFFPTKR-EEGWWVVIGDPKSNTLLSIKRLTLQQKAKFKLDFVAPRVGKYNYTLFFMSDSYLGCDQEYKLSVEIKDVGDVKRRPENSDTE 2140
MAD AR QYEY+ NSNLVL D L ++RGR+E TGEV+ +T K + KMGDRA++ + P + + ++ + + + GR+ VL D L GA Y+P+T ET+QTYEV+LSFI +ALGD PR++L GA DEVLLTLKN +D++KK E E+LLG L+++R A+L+NL KKI+DF++E EE + G DI E G+NVQF EEE GD E+ E + DT + L+ D ++ R LHP DIDAHW+QR L+KYF D ++QQK EV+ +L+ A D R+ EN+LVLLLG+D F+FIK L N+ MI+Y L+ NE+E+ ++ +MR L +L +L EG+ V +A K +KAA + E I Q ++L+L +L F++GSH +NKRC+LP+GS+R+Q+K YEE+HVPALKP+ + E V++ LP + +PAF+GY+SLNRIQS+L D+ L S +++LLCAPTGAGKTNVALL ML+EIG H+ DGS++ DEFKI+Y+APMKSLVQEMVGSFSKRLA F I VGE+TGD+QMSKEQ TQ+IVCTPEK+D++TRKG ER Y Q+VRL+IIDEIHLLHDDRGPVLESIV RTIR ME + +E RLVGLSATLPNYQDVATFLRV K L +FDNSYRPV LEQQ+IG+TEKK +KR Q MNEVV+ K+M AGKSQVLVFVHSRKETAKTA+A++D CLE+DTL AF++EGSAS E+LR+E+EQ KN DLKDLLPYGFAIHHAGMNRVDR+LVEDLFADRHIQVL ST+TLAWGVNLPAHTVIIKGTQIY+P+KGRW ELGALD++QMLGRAGRPQ+D +GEGILITNHSELQ+YLSL NQQLPVESQM+ +L DMLNAE++LGT+ ++ +A WLGYT+LFVRM++NPTLYGI E DP LE+ RA L+HTA +LL+K+ L+KY++++G +Q TELGRIASH+YC YE+M T+N+LL S+I+LFRIFS+S EFK + VRDEEKLEL K+ E PIP+KE+++E SAK N+LLQAYIS L+ +GFAL +DMVFV QSA RL RA+FEIVL GWA LA K L+LCKM+ +R W S++PL QFKKIP ++++ I+KKN+SF+R YDL +++G+LI+MPK+GK + KFI QFPKL++ + IQPITR+T+ IELTITPDF+WD+K HG ++GFWIF+ED D E +LHHEFFLLK+ F DEH VKM VP+F+P+PP Y++R+VSDRWIG+ETVLP+SFRHL+LPEK PPTELLDLQPLP++A+ N+ F+ +++ + FNP+QTQ F ++ S++NV++ AP GSGKT E A+LR F + E + VY+ P++ +A Y +W + P +G VLLTGE + DLKL RG +IISTPE+WD +SRRWKQRK+VQN++LF+AD++H++G + G V EVVCSR RYISSQL+ +R+VA SS+ NA+DL WLGC +ATFNF P+ RP+PL+L I+ N+SHNASR AM RPV+ AI +H+ + KP +++VP R+QTR A+ +LT A A+ P FL A+ DD + + I D++L+E++ GVG+LHEG + D +V+ LF+S A+QV VV R +C+ + + AYLV++MDTQFY+GK+H Y DY + D+L M+GLANRP D DAKCV++CQTSK+ +KKFL +PLP+ESHLDHCLHDHFNAEIVTKTIENKQDA+DYLTWTL+YRR+TQNPNYY +QG ++RHLSD LSE+VE TL +LE+SKCIA++DEMDT LNLGMIA+YYYI+Y TIELFSMSL KTK R LIEI+++S+EF ++P+RH E+ +LR L+ RLP ++ + KF DPHVK +L+ AHLSR++L+AEL +D ELIV +A RL+QACVDVLSSNGWL+PAI AMELSQM+TQAM++ E YLKQ+PH + ++ER A + SVF+++ELE+ DR +L + E+ADVARFCN YP+IE+ T ++ D + S D + + V LER++++ G P++AP FP KR EEGWW+VIGD +SN LL+IKRL + +K+ +LDF APR G + + LFF+SDSYLG DQE+ ++ ++++ G R+ ++ E
Sbjct: 1 MADELARIQQYEYRQNSNLVLSVDYNLTDRRGREEPTGEVLPITDKEMRKMKMGDRAIKGKAPVQDQKKKRKKKDDEKAQQFGRN-----------VLV-DNNELMGA-YKPRTQETKQTYEVILSFILDALGDVPREVLCGAADEVLLTLKNDKFRDKEKKKEVEALLGP-LTDDRIAVLINLSKKISDFSIE---EENKPEGDG-DIYENEGVNVQFDSDEEEDDGGMVNEIKGDSEEESEEEEGVDTDYTATLKGDGHLTEDEQKARGILHPRDIDAHWIQRSLAKYFKDPLIAQQKQTEVIGILKNAADDRDAENQLVLLLGFDQFEFIKCLRQNRLMILYCTLLRQA-NEKERLQIEDDMRSRPELHPILALLQETDEGSVVQVEKSKRDAEKSKKAATAANEAISAGQWQAGRKMLDLNDLTFSQGSHLMSNKRCELPDGSYRRQKKSYEEIHVPALKPRPFAEGEKLVSVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLHDDRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLRV-KPEHLHFFDNSYRPVPLEQQYIGVTEKKALKRFQAMNEVVYDKIMEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKDTLSAFMREGSASTEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVRMLKNPTLYGITHEQARADPLLEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGRIASHFYCTYESMQTYNKLLVETCSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEHAPIPIKENLDEASAKTNVLLQAYISQLKLEGFALQADMVFVAQSAGRLFRALFEIVLWRGWAGLAQKVLTLCKMVTQRQWGSLNPLHQFKKIPSEVVRSIDKKNYSFDRLYDLDQHQLGDLIKMPKMGKPLFKFIRQFPKLEMTTLIQPITRTTMRIELTITPDFKWDEKVHGSAEGFWIFIEDTDGEKILHHEFFLLKQKFCSDEHVVKMIVPMFDPMPPLYYVRIVSDRWIGAETVLPISFRHLILPEKYPPPTELLDLQPLPISAVTNKEFQTVFAESGFKVFNPIQTQVFRTVFESNENVIVCAPNGSGKTAIAELAVLRHFENTPEAKAVYITPMEDMATKVYADWKRRLEPAIGHTIVLLTGEQTMDLKLAQRGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIGASNGAVFEVVCSRTRYISSQLESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVPLDLEIKSFNLSHNASRFAAMERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPKRFLRLAEHDDTFQALLADIEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAIQVCVVPRGMCYQIEMSAYLVVVMDTQFYNGKYHVYEDYPIADMLHMVGLANRPILDSDAKCVVMCQTSKRAYYKKFLCDPLPVESHLDHCLHDHFNAEIVTKTIENKQDAIDYLTWTLLYRRMTQNPNYYNLQGTTHRHLSDALSELVELTLKDLENSKCIAVKDEMDTVSLNLGMIASYYYISYQTIELFSMSLKEKTKTRALIEIISASSEFGNVPMRHKEDVILRQLAERLPGQLKNQKFTDPHVKVNLLIHAHLSRVKLTAELNKDTELIVLRACRLVQACVDVLSSNGWLSPAIHAMELSQMLTQAMYSNEPYLKQLPHCSAALLERAKAKEVTSVFELLELENDDRSDILQMEGAELADVARFCNHYPSIEVA-TELENDVVTSNDNLMLAVSLERDNDIDGLAPPVVAPLFPQKRKEEGWWLVIGDSESNALLTIKRLVINEKSSVQLDFAAPRPGHHKFKLFFISDSYLGADQEFDVAFKVEEPGRSNRKRKHEKEE 2144
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. SwissProt
Match: gi|75337873|sp|Q9SYP1.1|DEXHC_ARATH (RecName: Full=DExH-box ATP-dependent RNA helicase DExH12; AltName: Full=BRR2 homolog A; Short=AtBRR2A; AltName: Full=Pre-mRNA-splicing helicase BRR2A; AltName: Full=Protein EMBRYO DEFECTIVE 1507) HSP 1 Score: 2328.52 bits (6033), Expect = 0.000e+0 Identity = 1164/2190 (53.15%), Postives = 1565/2190 (71.46%), Query Frame = 0
Query: 2 ADAAARSLQYEYKANSNLVLQADTRLIEKRGRDESTGEVISLTGKLLGTKMGDRAVRTRPTELKAQ------------EEARAAKKAKARRGRDEQAVGLRAGQSVLAQDAAGLEGALYQPKTAETRQTYEVLLSFIQEALGDQPRDILQGAVDEVLLTLKNSGTKDRDKKGETESLLGASLSEERFALLVNLGKKITDFALEGREEEGGTKAAGEDIDETYGINVQFQDSEEEASEEEEEAADGDEAEDEEMVQAPDTGRSGLRVD---KDEEGQSRQTRSALHPSDIDAHWLQRELSKYFP---DANVSQQKSKEVLEVLERAMDKRECENKLVLLLGYDCFDFIKILVTNKNMIVYSIRLKLCRNEEEQEKLMAEMRQ-SKTLSKMLDMLEGNQVTEAAKERKAAK------------------------PSLEIEEIPVQPALQILNLEELAFAKGSHFRANKRCQLPEGSFRKQEKGYEEVHVPALKPKALGDNEVNVAIESLPVYVRPAFEGYQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKSQVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQLLKPNLSEIELFRIFSLSGEFKHIGVRDEEKLELHKLMERVPIPVKESVEEPSAKINILLQAYISHLQFDGFALMSDMVFVTQSASRLLRAIFEIVLVHGWAQLADKTLSLCKMIDRRLWQSMSPLRQFKKIPMDIIKKIEKKNFSFERFYDLGPNEIGELIRMPKLGKAIHKFIHQFPKLDLISHIQPITRSTLSIELTITPDFQWDDKAHGHSQGFWIFVEDVDSEVVLHHEFFLLKKSFSQDEHSVKMFVPIFEPLPPQYFIRVVSDRWIGSETVLPVSFRHLVLPEKNLPPTELLDLQPLPVTALRNEAFEGIYSNKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLRLF--ASDSEVRCVYMAPLQAVAEIAYNEWHSKFSP-LGMRTVLLTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKHSR-RKPVIIYVPSRKQTRLTAIDILTFAAAES--NPDCFLHADFDDIKGFVDKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPGQDVDAKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCIAIEDEMDTSPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIVASSAEFEDIPLRHGEEALLRSLSNRLPHKITSGKFNDPHVKAQILVQAHLSRIQLSAELQQDAELIVSKAIRLIQACVDVLSSNGWLAPAIAAMELSQMVTQAMWNKESYLKQIPHLTQEVIERCVAN---NIDSVFDIVELEDSDRDKLLPLSADEMADVARFCNRYPNIEMNYTLVDKDRLASGDVVNVEVKLEREDE---VTGPIIAPFFPTKREEGWWVVIGDPKSNTLLSIKRLTLQQKAKFKLDFVAP-RVGKYNYTLFFMSDSYLGCDQEYKLSVEIKDVGDVKRRPE 2135
A+A AR QYEY+ANS+LVL D R R E TGE +L GK+ GDR + RP EL+ + ++ +++K RR R+E SVL + A+YQPKT ETR YE +L IQ+ LG QP I+ GA DE+L LKN ++ +KK E E LL + F LV++GK ITDF EG + GG E +D+ G+ V+F+++EE+ E + + ED++ T G++VD DE+ + L+ DIDA+WLQR++S+ + D Q ++E+L++L D R E+KL++ L Y+ F +K L+ N+ +V+ RL ++EE+ ++ EMR L+ +++ L + T +E K + E V+ Q+L+LE LAF +G ANK+C LP GS+R KGY+EVHVP + K + NE V I +P + +PAF+G Q LNR+QSK+ DT L +N+LLCAPTGAGKTNVA+L +L+++ + N DG+ ++KI+YVAPMK+LV E+VG+ S RL + + V EL+GD ++ +I ETQIIV TPEKWDIITRK +RTYTQLVRL+IIDEIHLLHD+RGPVLESIVART+R +E ++E +RLVGLSATLPNY+DVA FLRV+ K GLF FD SYRPV L QQ+IGI+ KKP++R QLMN++ ++KV+A AGK QVL+FVHSRKET+KTARA++D + DTL FLKE S + +VL S + VKN+DLKD+LPYGFAIHHAG++R DR +VE LF+ H+QVLVST+TLAWGVNLPAHTVIIKGTQ+Y+P+KG W+EL LDV+QMLGRAGRPQ+D GEGI+IT +SELQ+YLSL N+QLP+ESQ I KL D LNAE++LGT+Q +A WLGYTYL++RM+RNPTLYG+ +A+ D LE+ RA L+H+AA +L+K+NL+KY+RK+G Q T+LGRIAS+YY + T+ T+N+ LKP + +I+L+R+FSLS EFK++ VR +EK+EL KL++RVPIP+KE++EEPSAKIN+LLQAYIS L+ +G +L SDMV++TQSA RL+RA++EIVL GWAQLA+K L+L KM+ +R+W +PLRQF + DI+ ++EKK+ +ER+YDL E+GELIR PK+GK +HKFIHQFPK+ L +H+QPITR+ L++ELT+TPDF WD+K H + + FWI VED D E +LHHE+FLLKK + ++H++ VPIFEPLPPQYF+RVVSD+W+GSETVLPVSFRHL+LPEK PPTELLDLQPLPVTALRN +E +Y + FNPVQTQ F VLYN++DNVL+ AP GSGKT+C EFA+LR D+ +R VY+APL+A+A+ + W KF LG+R V LTGET+ DLKL+ +G IIISTPEKWD LSRRWKQRK VQ + LF+ DE+HL+GG GPV+EV+ SRMRYISSQ+ IRIVA +S+ANAKDL W+G ++ FNF P VRP+PLE++IQG++IS +R+ AM +P + AI +H++ +KP I++VP+RK RLTA+D++ ++ ++ +PD FL +++ FV++I ++TLKETLC G+GYLHEGLS D+ +V LF++G +QV V+S SLCWG L A+LV++M TQ+Y G+ +++ DY + D+LQM+G A+RP D KCV+ C +K+ +KKFLYE P+ES L H LHD+FNAE+V IENKQDAVDYLTWT MYRRL QNPNYY +QG+S+RHLSDHLSE+VE TLS+LE SKCI +EDEM+ SPLNLGMIA+YYYI+YTTIE FS L+SKTK++GL+EI+ S++E++ IP+R GEE +R L N + K DPHVKA L+QAH SR + L D ++ A RL+QA VDV+SSNGWL A+ AME+SQMVTQ MW ++S L Q+PH T+++ +RC N NI++VFD+VE+ED +R +LL +S ++ D+ARFCNR+PNI++ Y +V + + G V ++V LER+ E GP+ + +P +EEGWW+V+GD K+N LL+IKR++LQ+K K KLDF AP G+ +YTL+FM DSYLGCDQEY SV++K G R E
Sbjct: 8 AEAHARFKQYEYRANSSLVLTTDNR---PRDTHEPTGEPETLWGKIDPRSFGDRVAKGRPQELEDKLKKSKKKERDVVDDMVNIRQSKRRRLREE---------SVLTDT----DDAVYQPKTKETRAAYEAMLGLIQKQLGGQPPSIVSGAADEILAVLKNDAFRNPEKKMEIEKLLN-KIENHEFDQLVSIGKLITDFQ-EGGDSGGGRANDDEGLDDDLGVAVEFEENEEDDEESDPDMV----EEDDDEEDDEPTRTGGMQVDAGINDEDAGDANEGTNLNVQDIDAYWLQRKISQAYEQQIDPQQCQVLAEELLKILAEG-DDRVVEDKLLMHLQYEKFSLVKFLLRNRLKVVWCTRLARAEDQEERNRIEEEMRGLGPELTAIVEQLHATRATAKEREENLQKSINEEARRLKDETGGDGGRGRRDVADRDSESGWVKGQRQMLDLESLAFDQGGLLMANKKCDLPPGSYRSHGKGYDEVHVPWVS-KKVDRNEKLVKITEMPDWAQPAFKGMQQLNRVQSKVYDTALFKAENILLCAPTGAGKTNVAMLTILQQLEMNRNTDGTYNHGDYKIVYVAPMKALVAEVVGNLSNRLKDYGVIVRELSGDQSLTGREIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDNRGPVLESIVARTLRQIETTKENIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLHQQYIGISVKKPLQRFQLMNDLCYQKVLAGAGKHQVLIFVHSRKETSKTARAIRDTAMANDTLSRFLKEDSVTRDVLHSHEDIVKNSDLKDILPYGFAIHHAGLSRGDREIVETLFSQGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITGYSELQYYLSLMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVRNPTLYGLAPDALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEHLKPTMGDIDLYRLFSLSDEFKYVTVRQDEKMELAKLLDRVPIPIKETLEEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLVRALYEIVLKRGWAQLAEKALNLSKMVGKRMWSVQTPLRQFHGLSNDILMQLEKKDLVWERYYDLSAQELGELIRSPKMGKPLHKFIHQFPKVTLSAHVQPITRTVLNVELTVTPDFLWDEKIHKYVEPFWIIVEDNDGEKILHHEYFLLKKQYIDEDHTLHFTVPIFEPLPPQYFVRVVSDKWLGSETVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPNYEILYQD-FKHFNPVQTQVFTVLYNTNDNVLVAAPTGSGKTICAEFAILRNHHEGPDATMRVVYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELTGETALDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIGGQHGPVLEVIVSRMRYISSQVINKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQGVDISSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLMAYSHMDNPQSPD-FLLGKLEELDPFVEQIREETLKETLCHGIGYLHEGLSSLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLTAHLVVVMGTQYYDGRENSHSDYPVPDLLQMMGRASRPLLDNAGKCVIFCHAPRKEYYKKFLYEAFPVESQLQHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLPQNPNYYNLQGVSHRHLSDHLSELVENTLSDLEASKCIEVEDEMELSPLNLGMIASYYYISYTTIERFSSLLSSKTKMKGLLEILTSASEYDMIPIRPGEEDTVRRLINHQRFSFENPKCTDPHVKANALLQAHFSRQNIGGNLAMDQRDVLLSATRLLQAMVDVISSNGWLNLALLAMEVSQMVTQGMWERDSMLLQLPHFTKDLAKRCQENPGKNIETVFDLVEMEDEERQELLKMSDAQLLDIARFCNRFPNIDLTYEIVGSEEVNPGKEVTLQVMLERDMEGRTEVGPVDSLRYPKTKEEGWWLVVGDTKTNQLLAIKRVSLQRKVKVKLDFTAPSEPGEKSYTLYFMCDSYLGCDQEYSFSVDVKGSGAGDRMEE 2171
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. SwissProt
Match: gi|75318295|sp|O48534.1|DEXHD_ARATH (RecName: Full=DExH-box ATP-dependent RNA helicase DExH13; AltName: Full=BRR2 homolog B; Short=AtBRR2B; AltName: Full=Pre-mRNA-splicing helicase BRR2B) HSP 1 Score: 2275.74 bits (5896), Expect = 0.000e+0 Identity = 1134/2175 (52.14%), Postives = 1556/2175 (71.54%), Query Frame = 0
Query: 2 ADAAARSLQYEYKANSNLVLQADTRLIEKRGRDESTGEVISLTGKLLGTKMGDRAVRTRPTELKAQEEARAAKKAKARRGRDEQAVGLRAGQSVLAQDAAGL---EGALYQPKTAETRQTYEVLLSFIQEALGDQPRDILQGAVDEVLLTLKNSGTKDRDKKGETESLLGASLSEERFALLVNLGKKITDFALEGREEEGGTKAAG---EDIDETYGINVQFQDSEEEASEEEEEAADGDEAEDEEMVQAPDTG--RSGLRVDKDEEGQSRQTRSALHPSDIDAHWLQRELSKYFP---DANVSQQKSKEVLEVLERAMDKRECENKLVLLLGYDCFDFIKILVTNKNMIVYSIRLKLCRNEEEQEKLMAEMRQ-SKTLSKMLDMLEGNQVTEAAKERKAAKP-------------------------SLEIEEIPVQPALQILNLEELAFAKGSHFRANKRCQLPEGSFRKQEKGYEEVHVPALKPKALGDNEVNVAIESLPVYVRPAFEGYQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKSQVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQLLKPNLSEIELFRIFSLSGEFKHIGVRDEEKLELHKLMERVPIPVKESVEEPSAKINILLQAYISHLQFDGFALMSDMVFVTQSASRLLRAIFEIVLVHGWAQLADKTLSLCKMIDRRLWQSMSPLRQFKKIPMDIIKKIEKKNFSFERFYDLGPNEIGELIRMPKLGKAIHKFIHQFPKLDLISHIQPITRSTLSIELTITPDFQWDDKAHGHSQGFWIFVEDVDSEVVLHHEFFLLKKSFSQDEHSVKMFVPIFEPLPPQYFIRVVSDRWIGSETVLPVSFRHLVLPEKNLPPTELLDLQPLPVTALRNEAFEGIYSNKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLR--LFASDSEVRCVYMAPLQAVAEIAYNEWHSKFSP-LGMRTVLLTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKHSR-RKPVIIYVPSRKQTRLTAIDILTFAAAES--NPDCFLHADFDDIKGFVDKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPGQDVDAKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCIAIEDEMDTSPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIVASSAEFEDIPLRHGEEALLRSLSNRLPHKITSGKFNDPHVKAQILVQAHLSRIQLSAELQQDAELIVSKAIRLIQACVDVLSSNGWLAPAIAAMELSQMVTQAMWNKESYLKQIPHLTQEVIERC---VANNIDSVFDIVELEDSDRDKLLPLSADEMADVARFCNRYPNIEMNYTLVDKDRLASGDVVNVEVKLEREDE---VTGPIIAPFFPTKREEGWWVVIGDPKSNTLLSIKRLTLQQKAKFKLDFVAP-RVGKYNYTLFFMSDSYLGCDQEYKLSVEIKD 2126
A+ AR QY YK NS+LVL +D R +R ES+GE SL G++ GDR VR RP EL + K+K ++ R + V R + V ++ + L E +YQPKT ETR +E++L IQ+ LG QP DI+ GA DE+L LKN K+ +KK E E LL ++++ F+ V++GK ITD+ EEGG +G ED Y I V + E++ + + D + EDE++V+ TG + G+ ++ ++ Q+++ ++L+ DIDA+WLQR++S+ + DA Q+ ++E+L++L D R+ E KL+ L ++ F +K L+ N+ +V+ RL R++EE+ ++ EM L+ ++ L + T +E K K L++E ++ Q+++LE LAF +G R N +C+LP+ SFR + K ++EVHVP + K NE V I LP + +PAF G Q LNR+QSK+ T L N+LLCAPTGAGKTNVA+L +L ++G ++NP G+ +KI+YVAPMK+LV E+V S S+RL F + V EL+GD ++ ++I ETQIIV TPEKWDIITRK +RTYTQLVRL+IIDEIHLL D+RGPVLESIVART+R +E ++E +RLVGLSATLPN DVA+FLRV+ K GLF FD SYRPV L QQ+IGI KKP++R QLMN++ ++KV+A AGK QVL+FVHSRKETAKTARA++D + DTL FLKE S S E+L+ + +KNNDLK+LLPYGFAIHHAG+ R DR +VE+ F ++QVL+ST+TLAWGVNLPAHTVIIKGTQ+Y+P++G W+EL LDV+QM+GRAGRPQ+D +GEGI+IT +S+LQ+YL L N+QLP+ESQ I KL D LNAE++LGTIQ +A WLGYTYL+VRM+RNPTLYG+ +A+ D LE+ RA L+H+AA +L+K+NL+KY+RK+G Q T+LGRIAS+YY + T+ +N+ LKP +++IEL R+FSLS EFK++ VR +EK+EL KL++RVPIPVKE++E+PSAKIN+LLQ YIS L+ +G +L SDMV++TQSA RLLRAIFEIVL GWAQL+ K L+L KM+ +R+W +PL QF IP +I+ K+EK + +ER+YDL E+GELI PK+G+ +HK+IHQFPKL L +H+QPI+RS L +ELT+TPDF WDDKA+ + + FWI VED D E +LHHE+FL KK ++H++ VPI EP+PPQYFIRVVSD+W+ S TVLPVSFRHL+LPEK PPTELLDLQPLPV ALRN ++E +Y + FNPVQTQ F VLYN+ DNV++ AP GSGKT+C EFA+LR L DS +R VY+APL+A+A+ + +W KF LG+R V LTGET DLKL+ +G IIISTPEKWD LSRRWKQRK +Q + LF+ DE+HL+GG G V+EV+ SRMRYISSQ+ IRIVA +S+ANAKDL W+G + FNF PNVRP+PLE++I G++I +R+ AM +P + AI +H++ +KP I++VP+RK RLTA+D++ ++ ++ +PD FL + ++++ F+ +I ++TLKETL G+GYLHEGLS D+ +V LF++G +QV V+S SLCWG L+A+LV++M T FY G+ +++ DY ++++LQM+G +RP D KCV+ C +K+ +KKFLYE LP+ESHL H LHD+FNAE+V + IENKQDAVDYLTW+ MYRRL QNPNYY + G+S+RHLSDHLSE+VE TLS+LE SKCI I++E+D SPLNLGMIA+YYYINYTTIE FS L SKTK++GL+EI+ S++E++ IP+R GEE +R L N + + DP VK L+QAH SR ++S L D ++ A RL+QA VDV+SSNG L A+ AME+SQMVTQ MW+++S L Q+PH T+++ +RC NNI+++FD+VE+ED R +LL +S ++ D+ARFCNR+PNI++ Y +V + ++ G + ++V LER+ E GP+ AP +P +EEGWW+V+G+ K+N L++IKR++LQ+KA+ KL+F P G+ +YTL+FM DSYLGCDQEY +V++KD
Sbjct: 9 AEEQARLKQYGYKVNSSLVLNSDER---RRDTHESSGEPESLRGRIDPKSFGDRVVRGRPHELDER-----LNKSKKKKERCDDLVSARESKRVRLREVSVLNDTEDGVYQPKTKETRVAFEIMLGLIQQQLGGQPLDIVCGAADEILAVLKNESVKNHEKKVEIEKLLNV-ITDQVFSQFVSIGKLITDY------EEGGDSLSGKASEDGGLDYDIGVALECEEDDDESDLDMVQDEKDEEDEDVVELNKTGVVQVGVAINGEDARQAKED-TSLNVLDIDAYWLQRKISQEYEQKIDAQECQELAEELLKILAEGND-RDVEIKLLEHLQFEKFSLVKFLLQNRLKVVWCTRLARGRDQEERNQIEEEMLGLGSELAAIVKELHAKRATAKEREEKREKDIKEEAQHLMDDDSGVDGDRGMRDVDDLDLENGWLKGQRQVMDLESLAFNQGGFTRENNKCELPDRSFRIRGKEFDEVHVPWVS-KKFDSNEKLVKISDLPEWAQPAFRGMQQLNRVQSKVYGTALFKADNILLCAPTGAGKTNVAVLTILHQLGLNMNPGGTFNHGNYKIVYVAPMKALVAEVVDSLSQRLKDFGVTVKELSGDQSLTGQEIKETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLDDNRGPVLESIVARTLRQIESTKEHIRLVGLSATLPNCDDVASFLRVDLKNGLFIFDRSYRPVPLGQQYIGINVKKPLRRFQLMNDICYQKVVAVAGKHQVLIFVHSRKETAKTARAIRDTAMANDTLSRFLKEDSQSREILKCLAGLLKNNDLKELLPYGFAIHHAGLTRTDREIVENQFRWGNLQVLISTATLAWGVNLPAHTVIIKGTQVYNPERGEWMELSPLDVMQMIGRAGRPQYDQQGEGIIITGYSKLQYYLRLMNEQLPIESQFISKLADQLNAEIVLGTIQNAREACHWLGYTYLYVRMVRNPTLYGVSPDALAKDLLLEERRADLIHSAATILDKNNLIKYDRKSGHFQVTDLGRIASYYYISHGTIAAYNENLKPTMNDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKETLEDPSAKINVLLQVYISKLKLEGLSLTSDMVYITQSAGRLLRAIFEIVLKRGWAQLSQKALNLSKMVGKRMWSVQTPLWQFPGIPKEILMKLEKNDLVWERYYDLSSQELGELICNPKMGRPLHKYIHQFPKLKLAAHVQPISRSVLQVELTVTPDFHWDDKANKYVEPFWIIVEDNDGEKILHHEYFLFKKRVIDEDHTLNFTVPISEPIPPQYFIRVVSDKWLDSPTVLPVSFRHLILPEKYPPPTELLDLQPLPVMALRNPSYETLYQD-FKHFNPVQTQVFTVLYNTSDNVVVAAPTGSGKTICAEFAILRNHLEGPDSAMRVVYIAPLEAIAKEQFRDWEKKFGKGLGLRVVELTGETLLDLKLLEKGQIIISTPEKWDALSRRWKQRKYIQQVSLFIVDELHLIGGQGGQVLEVIVSRMRYISSQVGNKIRIVALSTSLANAKDLGEWIGASSCGVFNFPPNVRPVPLEIHIHGVDILSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLIAYSHMDNMKSPD-FLLGNLEELEPFLIQICEETLKETLRHGIGYLHEGLSNLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLKAHLVVVMGTHFYDGRENSHSDYPISNLLQMMGRGSRPLLDDAGKCVIFCHAPRKEYYKKFLYEALPVESHLQHFLHDNFNAEVVARVIENKQDAVDYLTWSFMYRRLPQNPNYYNLLGVSHRHLSDHLSELVENTLSDLEVSKCIEIDNELDLSPLNLGMIASYYYINYTTIERFSSLLASKTKMKGLLEILTSASEYDLIPIRPGEEDAVRRLINHQRFSFQNPRCTDPRVKTSALLQAHFSRQKISGNLVMDQCEVLLSATRLLQAMVDVISSNGCLNLALLAMEVSQMVTQGMWDRDSMLLQLPHFTKDLAKRCHENPGNNIETIFDLVEMEDDKRQELLQMSDAQLLDIARFCNRFPNIDLTYEIVGSNEVSPGKDITLQVLLERDMEGRTEVGPVDAPRYPKTKEEGWWLVVGEAKTNQLMAIKRISLQRKAQVKLEFAVPTETGEKSYTLYFMCDSYLGCDQEYSFTVDVKD 2163
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. SwissProt
Match: gi|74997404|sp|Q55CI8.1|HELCL_DICDI (RecName: Full=Activating signal cointegrator 1 complex subunit 3-like) HSP 1 Score: 2069.66 bits (5361), Expect = 0.000e+0 Identity = 1062/2233 (47.56%), Postives = 1486/2233 (66.55%), Query Frame = 0
Query: 1 MADAAARSLQYEYKANSNLVLQADTRLIEKRGRDESTGEVISLTGKLLGTKMGDRAVRTRPTEL--KAQEEAR------------------AAKKAKARRGRDEQAVGLRAGQSVLAQDAAGLEGA------LYQPKTAETRQTYEVLLSFIQEALGDQPRDILQGAVDEVLLTLKNSGTKDRDKKGETESLLGASLSEERFALLVNLGKKITDFA---LEGREEEGGTKAAGEDIDETYGINV---------------------------------------QFQDSEEEASEEEEEAADGDEAEDEEMVQAPDTGRSGLRVDKDEEGQSRQTRSALHPSDIDAHWLQRELSKYFPDANVSQQKSKEVLEVLERAMDKRECENKLVLLLGYDCFDFIKILVTNKNMIVYSIRLKLCRNEEEQEKLMAEMRQSKTLSKMLDMLEGNQVTEAAKERKAAKPSLEIEEIP-----------VQPALQILNLEELAFAKGSHFRANKRCQLPEGSFRKQEKGYEEVHVPALKPKALGDNEVNVAIESLPVYVRPAFE--GYQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPD-GSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKSQVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLR-SESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQLLKPNLSEIELFRIFSLSGEFKHIGVRDEEKLELHKLMERVPIPVKESVEEPSAKINILLQAYISHLQFDGFALMSDMVFVTQSASRLLRAIFEIVLVHGWAQLADKTLSLCKMIDRRLWQSMSPLRQFKKIPMDIIKKIEKKNFSFERFYDLGPNEIGELIRMPKLGKAIHKFIHQFPKLDLISHIQPITRSTLSIELTITPDFQWDDKAHGHSQGFWIFVEDVDSEVVLHHEFFLLKKSFSQDEHSVKMF-VPIFEPLPPQYFIRVVSDRWIGSETVLPVSFRHLVLPEKNLPPTELLDLQPLPVTALRNEAFEGIYSNKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLRLFASDSEVRCVYMAPLQAVAEIAYNEWHSKF---SPLGMRTVLLTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKHSRRKPVIIYVPSRKQTRLTAIDIL----TFAAAESNPDCFLHADFDDIKGFVDKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGV-NLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANR-PGQDVD----AKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCIAIEDEMD-TSPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIVASSAEFEDIPLRHGEEALLRSLSNRLPHKITSGKFNDPHVKAQILVQAHLSRIQLSAELQQDAELIVSKAIRLIQACVDVLSSNGWLAPAIAAMELSQMVTQAMWNKESYLKQIPHLTQEVIERCVANNIDSVFDIVELEDSDRDKLLPLSADEMADVARFCNRYPNIEMNYTLVDKDRLASGDVVNVEVKLERE--DEVTGPI---------IAPFFPTKREEGWWVVIGDPKSNTLLSIKRLTLQQKAKFKLDFVAPRVGKYNYTLFFMSDSYLGCDQEYKLSVEI 2124
M++ ARS QY YK NSNLV ++ E + E GE +L G+L G +MGDR ++P EL K Q R KK K + ++++ ++ + + + A LY+PKT ETR TYE LL+FIQ +GDQP ++++GA+DE+L LK+ + +KK E LL L++ FA L LGK+ITDF L ++++ + + + +D+ G+ V + QDSE + +E D ++ E + + + KD++ + + + P++ID+ W+QR++S++ D ++S+Q +++ L +L R + R CE +LV L D DF+K+++ NK I+Y L N++E++K+ EM + +L+ L+GN+VT A E+ K +++ ++ ++LNLEEL+F +GSH NK + P+GS R+Q KG+EE+HVPA NE ++IE LP + R FE G +SLNR+QSKL D +D N+LL APT +GKTNVA+L +L EIGK+ + D G IR D FKI+Y+APMKSLVQEMVG+FSKRL + I V ELTGD ++ +QISETQIIV TPEKWDIITRK +R YTQLV+LIIIDEIHLLHD+RGPVLE IVART+R +E +Q+ VRLVGLSATLPNY+DVATFLRV + G+FYFD+SYRP+ LEQQ+IGI+++ +K+ Q N++ F KV R G Q+L+FVHSR+ETAKT + L+D +E ++ ++++ AS E+LR + S+Q++N +LKDLLPYG IHHAG++R DRSLVEDLF D IQVL+ST+TLAWGVNLPAHTVIIKGTQIY+P+KG W EL LDV QMLGRAGRP FD +GEGI+IT+ ELQFYLSL N QL +ESQ I ++ D LNAE++LG+IQT+ DAV WLGYTYL++ M+RNP LY I ++ E DP LE+ R LVH+AA +LEK++L+KY+RK+G +Q TELG++ASHYY +M + + LKP++S+IEL R+FSLS EFK++ VR+ EK EL KL+ERVPIP+KE++EEPS+KIN+LLQ YIS+L+ DGFAL+ DM ++ QSASR+ RA+FEIVL GWAQLA K L+L KMID ++W S SPLRQF KI ++ ++E++ E Y+ ++G I+ P GK + IH FPKLDL +H+QPI L +EL+ITPDFQ+D++ H +S G+WI VEDVD E +L+ E+F LKK E + F VP+ +PLPPQY++RV+SD WIG+E LP+SF+HL+LPEK P LLDLQPLP+ L++ E I+ + FN +QTQ FN +Y S+DN I AP SGKT+C E A++R F + + + VY+AP+Q +A + +W +KF SP G+ LTG+ TD K++ R NII++ EKWD+LSR+WKQRK +Q+I L + DE+HL+GG GP ME+V SRMRYIS+Q +R++A SS+ANA+DL W+G +NFHPNVRPIP+E IQG H +R+LAM +P + K+ ++ I++VP+RK +R A DI+ +F + P +L + + +++ + LK++L GV + H+GL++ +R VVE LF SG+++VL+ + S+ W + N+ A LV+IM TQ Y GK Y DY + D+LQMIG A + G V AK +LLC KK+ +K FL EPLP+ESHLDHCLHD FN+EIVTKTI KQDA+DYLTWT +YRRL QNPNYY + G+S+ HLS+HLSE+VE TL ELE S CI I+D+ D SPLNLG+IA+YYY+ Y TIELF SL S T+ RG+++I++++ EF +P+RH E+ +L L++ LP KI + + K +L+Q H SR +SA+L QD + I+ A RL+QA VDV+SSN WL PAIAAMELSQM+TQAMW+ +S KQ+PH+ + I+ + I+SVFD++ L+D+ R +LL LS E D+ + +YP+I+++Y + D+D L + ++ VE+ +ER+ D+ PI AP++P ++ GWW +IGD K+N LL+IKR+T +K K K +F P VGK+ +L+ SDSY GCDQE++L++ I
Sbjct: 1 MSEELARSKQYGYKENSNLVFYSERNRSELK---EPKGEPETLWGRLRG-EMGDRVNYSKPLELLEKMQNLKRKTIEKEGGDVNSSNDTYSTTKKVKNQNPLEKKSTNRKSNGNNNNEKPIDILSATESFQGLYKPKTKETRITYETLLTFIQRYVGDQPTEVVKGALDEILSILKDDTIRAPEKKIEISKLLKG-LNDVSFAELTQLGKQITDFKDSELAKQQQQQQQQQSMDSLDDEQGVAVIIDEEEEEENLSDFEIRDDDDDDDDVDNNEVDDNNNNDSEAQDSEIQTKDENNNDDDENQKIKENNNNNNKSQKPDTKNTKDDKNNNSK---LISPNEIDSFWIQRKISEFERDHDLSKQLAEKTLNIL-RQPNVRRCEQQLVDLFTIDKLDFLKLIINNKQTILYCTLLAKAENDQERKKIEDEMSSNPVTLSILNRLKGNEVTAATTEKTIEKTESNKKDVEMKQQQQQQQDEIKKPKKLLNLEELSFQQGSHLMTNKEFKFPKGSKREQYKGFEEIHVPARANPPFNPNERLISIEELPEWSRLPFEESGVKSLNRVQSKLFDCAFKTDNNLLLSAPTSSGKTNVAMLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMKSLVQEMVGNFSKRLKSYGIVVNELTGDQSLTNKQISETQIIVTTPEKWDIITRKSGDRAYTQLVKLIIIDEIHLLHDERGPVLECIVARTLRMIESTQQMVRLVGLSATLPNYEDVATFLRV-EPDGVFYFDSSYRPIPLEQQYIGISDRG-IKQLQRCNDITFTKVSERVGDHQILIFVHSRRETAKTGKDLRDRAVEDQSIDRYIRD-PASREILRATASKQIQNAELKDLLPYGIGIHHAGLSRSDRSLVEDLFGDNRIQVLISTATLAWGVNLPAHTVIIKGTQIYNPEKG-WCELSPLDVTQMLGRAGRPPFDKEGEGIIITSQHELQFYLSLLNTQLSIESQFISRIADNLNAEIVLGSIQTVRDAVNWLGYTYLYICMIRNPPLYEISYDDFEKDPLLEQRRLDLVHSAATILEKNSLIKYDRKSGKLQSTELGKVASHYYITNSSMSIYQEHLKPSMSDIELLRVFSLSSEFKNVVVREGEKFELEKLLERVPIPIKENIEEPSSKINVLLQTYISNLKLDGFALVVDMFYIAQSASRITRALFEIVLKKGWAQLAKKILNLAKMIDSKMWSSQSPLRQFHKISPKVLNQLERRGIPIEDLYEYNSQQLGNAIQNPSEGKQLFDLIHNFPKLDLTAHVQPILHGLLRVELSITPDFQYDERYHNNSIGWWIIVEDVDGERILYFEYFSLKKKMVNGEDQLVSFTVPLSQPLPPQYYVRVISDHWIGAEYSLPISFQHLILPEKYPPCRPLLDLQPLPIQVLKDPKAESIFKPTFSIFNAIQTQVFNCMYQSNDNAFISAPTNSGKTVCAEIALIRCFKQNPKAKVVYLAPMQDLASVRLKDWSNKFGVKSPFGLVVSDLTGDAVTDNKILDRSNIIVTNCEKWDILSRKWKQRKALQSINLLIVDELHLIGGEYGPTMEIVVSRMRYISTQTGNALRVIALSSSIANARDLVLWIGATPQTCYNFHPNVRPIPVEYQIQGFEFPHFNARMLAMTKPTVYEVAKNKNQQS-IVFVPTRKLSRSLAADIIANVSSFEDTLTKP--YLVCEEHVLTPYLEDVDSFALKQSLQMGVAFYHDGLTERERRVVEILFRSGSIRVLIATHSVAWLLDNVFAQLVVIMGTQLYQGKDIRYIDYPINDILQMIGRAGKQEGGGVISNKVAKVLLLCHAPKKEYYKMFLNEPLPVESHLDHCLHDQFNSEIVTKTITKKQDALDYLTWTFLYRRLNQNPNYYNLSGVSHLHLSEHLSELVENTLVELEQSNCITIQDDQDKVSPLNLGIIASYYYLKYQTIELFGSSLKSTTRRRGIMDIISNAPEFNSLPIRHREDQILMKLASHLPQKIDKPNYQEISTKVNVLLQCHFSRESISADLYQDQKFILENATRLLQAIVDVISSNSWLQPAIAAMELSQMITQAMWDSDSVFKQLPHMNKRRIDAITSQGIESVFDLMSLDDNSRIQLLDLSQQESNDLVQSFMKYPDIDISYQVQDEDDLHADSIMTVEMVIERDLGDDEENPIEINDSINVVSAPYYPKEKICGWWALIGDSKNNHLLAIKRITFLKKTKVKFEFPTPAVGKHQLSLYLFSDSYNGCDQEHELNINI 2217
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. SwissProt
Match: gi|74698435|sp|Q9UT24.1|BRR2_SCHPO (RecName: Full=Pre-mRNA-splicing factor brr2; AltName: Full=Pre-mRNA-splicing factor spp41; AltName: Full=Pre-mRNA-splicing helicase BRR2) HSP 1 Score: 1999.56 bits (5179), Expect = 0.000e+0 Identity = 1013/2154 (47.03%), Postives = 1435/2154 (66.62%), Query Frame = 0
Query: 10 QYEYKANSNLVLQADTRLIEKRGRDESTGEVISLTGKLLGTKMGDRAVRTRPTELKAQEEARAAKKAKARRGRDEQAVGLRAGQ-----SVLAQDAAGLEGALYQPKTAETRQTYEVLLSFIQEALGDQPRDILQGAVDEVLLTLKNSGTKDRDKKGETESLLGASLSEERFALLVNLGKKITDFALE--------GREEEGGTKAAGEDIDETYGINVQFQDSEEEASEEEEEAADGDEAEDEEMVQAPDTGRSGLRVDKDEEGQSRQTRSALHPSDIDAHWLQRELSKYFPDANVSQQKSKEVLEVLERAMDKRECENKLVLLLGYDCFDFIKILVTNKNMIVYSIRLKLCRNEEEQEKLMAEMRQSKTLSKMLDMLEG----------NQVTEAAKERKAAKPSLEIEEIPVQPAL--------QILNLEELAFAKGSHFRANKRCQLPEGSFRKQEKGYEEVHVPALKPKALGDNEVNVAIESLPVYVRPAFEGYQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKSQVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQLLKPNLSEIELFRIFSLSGEFKHIGVRDEEKLELHKLMERVPIPVKESVEEPSAKINILLQAYISHLQFDGFALMSDMVFVTQSASRLLRAIFEIVLVHGWAQLADKTLSLCKMIDRRLWQSMSPLRQFKKIPMDIIKKIEKKNFSFERFYDLGPNEIGELIRMPKLGKAIHKFIHQFPKLDLISHIQPITRSTLSIELTITPDFQWDDKAHGHSQGFWIFVEDVDSEVVLHHEFFLLKKSFSQDEHSVKMFVPIFEPLPPQYFIRVVSDRWIGSETVLPVSFRHLVLPEKNLPPTELLDLQPLPVTALRNEAFEGIYSNKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLRLFASDSEVRCVYMAPLQAVAEIAYNEWHSKFSPLGMRTVL--LTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKH-SRRKPVIIYVPSRKQTRLTAIDILTFAAAESNPDCFLHADFDDIKGFVDKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPGQDVDAKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCIAIEDEMDTS-PLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIVASSAEFEDIPLRHGEEALLRSLSNRLPHKITSGKFNDPHVKAQILVQAHLSRIQLSAELQQDAELIVSKAIRLIQACVDVLSSNGWLAPAIAAMELSQMVTQAMWNKESYLKQIPHLTQEVIERCVANNIDSVFDIVELEDSDRDKLLPLSADEMADVARFCNRYPNIEMNYTLVDKDRLASGD----VVNVEVKLEREDEVTGPIIAPFFPTKREEGWWVVIGDPKSNTLLSIKRLTLQQKAKFKLDFVAPRVGKYNYTLFFMSDSYLGCDQEYKLSVEI 2124
QY Y A SNLV QAD R + +R E TGE SL ++ MG RA +P+ L + + R+ + +G+R + S + + E Y P T ETR+ Y+ +LSFIQ+ LGDQ +IL+ A D ++ LK+S ++ +K + E +L L ++RF+ LVNLG ++TD+ +E G E G E +E + +D E + E + E E+++ ++ PDT + + D + + +HP +IDA WLQRE++KYF DA V Q+K+ + E L D E EN+L+ + Y+ F +++L N+ IV LK +EE+ + ++R + S +L+ L N++ E+ P + EIP+ L ++LE F +GS +NK +LPEGSFR+ KGYEE+HVPA LG +E V I+ LP + AF QSLNRIQS L +D+N+LLCAPTGAGKTNVA+L +L E+ KH+ D S FKI+Y+AP+K+LVQEMV +FSKRL +NI+V ELTGDSQ++K+QISETQIIV TPEKWDIITRK + +Y LVRL+IIDE+HLLHD+RGPVLESIVAR RH E + E+VRLVGLSATLPNY DVA+FL V+ K GLFYFD++YRP L+Q+FIGITEK P KR Q NE ++KVM AGK+QVL+FVHSRKETAKTAR ++D LE +T+G L+ +AS E+LR+E++ + +LKDLLPYGFAIHHAGM R DR EDLFAD IQVLVST+TLAWGVNLPAHTVIIKGTQ+YSP+KG W EL DVLQMLGRAGRPQFDT GEGI+IT HSELQ+YLSL NQQLP+ESQ +R+L D LNAE+ LGT++++ED V WLGYTYL+VRM+R+P LY + E ++D L + RA L+H+AA+LLEK LL Y R++G + TELG++A+ YY + +M +N+LL S IELFR+FS S EFKHI VR+EEK+EL KL+ERVPIP++E ++EP+AKIN LLQ+YIS + DGFAL++DMV+VTQSA R++RAIFEI L GW+ +A +L CKMI++RLW +MSPLRQF P ++I+++EKK F ++R++DL P E+GEL+ +PK G+ ++ + FP+L + +H+QPITRS + +EL I F WDD G S+ FWI VEDVD + +LH+E F L K + DEH V VP+ EPLPP YFI++VSDRW+ S T +P+SF+ L++PEK PT LLDLQ PV++L N +F +Y N FN +QTQ FN +Y ++D+V IGAP GSGKT+C E A+L ++ + VY+AP+Q + + Y EW+ KFS LG VL LTGE S DLKLI ++I TP +WD LS+RW+ +++Q + ++ DE+ L+GG GP+ E+V SR+RY++ QL+K IR+V S+ANA+DL WLG FNF P RP PL +++Q +I+H S +LAM++P++ ++ S+RK I++ P RK + A D++TF+ A+ D +L + ++ + F +K+ D L+++L G+ Y+ E S D+++V+ L+ G ++VL+ SR + + + ++ VI+M TQ+Y GK H Y DY ++++LQM+G G ++ +L+ T+KK+ +KKFL EPLP+ESHL LHD F +EI T+TIE+KQDAVD+LTW+ MYRRL NP YYG+Q I++ +S+ LS++VE T+++L ++ I ++DE D+ LNL MIA++Y I Y T++ F++SL+ +TK++GL+EIV S+AE+E +P+R E+ +L + +RLP ++++ + DPH K+ IL+ AH SR +L L D + I+++ L+ ACVD LSS G L I ME+SQMVTQA+W+++S LKQIP+ +IERC + VFDI++L+D R +LL + +A A F N+YP+I++++ + D + + + +V + +LE ++EV +IAP+FP ++ E WW+VI D K TLL+IK++TL + K++FV P +G Y L SDSY+G D E + +
Sbjct: 29 QYSYSAMSNLVTQADRRFVSRRDA-EPTGEPESLVNRVSIADMGSRARIEKPSTLPLELTQEVQEVRLPRKDAESLEIGIRQPEREKRSSAILKYFDSFEILKYNPLTDETREVYDYILSFIQQYLGDQSPEILRSAADLIIELLKDSSLDEQGRKKQIEEVLSTELPQDRFSQLVNLGNRLTDYTVEQEEELNEEGVNESGVPVLFNEADEEEEAVEAMEEDEVAEDEDVVLETSISQE-EEKKNIENPDTEVTFISADTKKVTEI----PTVHPREIDAFWLQREIAKYFADAVVCQEKTNQAFEALSADYDLGELENELMSIFDYEHFYLVQLLTKNRWTIVSCTMLKRAATDEERLGVEEQIRAAGR-SWILEALRPGAITIPDDGLNELNNNVVEKAEPAP---VSEIPLSKTLTSHKIVPKHQVDLENYVFTEGSRLMSNKAVKLPEGSFRRTGKGYEEIHVPAPNKAVLGADERLVKIKELPEWSHQAFLNTQSLNRIQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSKRLTPYNIRVAELTGDSQLTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLVIIDEVHLLHDERGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASFLHVDPKKGLFYFDSTYRPCPLKQEFIGITEKTPFKRMQTTNEACYEKVMQHAGKNQVLIFVHSRKETAKTARFIRDKALEEETIGHLLRSDAASREILRAEADSTSDENLKDLLPYGFAIHHAGMRREDRQTSEDLFADGTIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQFDTYGEGIIITAHSELQYYLSLMNQQLPIESQFMRRLADCLNAEVSLGTVRSIEDGVDWLGYTYLYVRMLRSPALYSVGPE-YDDDKYLVQKRADLLHSAAILLEKCKLLVYNRQSGTLTATELGKVAASYYVTHNSMAIYNRLLMQTTSFIELFRVFSFSDEFKHIPVREEEKVELAKLLERVPIPIRERLDEPAAKINALLQSYISRQRLDGFALVADMVYVTQSAGRIMRAIFEISLRRGWSSVATLSLDTCKMIEKRLWPTMSPLRQFPNCPSEVIRRVEKKEFPWQRYFDLDPAELGELVGVPKEGRRVYNMVQSFPRLSVEAHVQPITRSLVRVELVINSQFNWDDHLSGTSEAFWILVEDVDGDRLLHYEQFFLLKKYKDDEHIVNFTVPLLEPLPPCYFIKIVSDRWLHSITKVPLSFQRLIMPEKFPAPTPLLDLQNAPVSSLNNPSFISLYPN-FKFFNKIQTQVFNSVYKTNDSVFIGAPNGSGKTVCAELALLHHWSQEDYGTAVYIAPIQEIVDRRYEEWYGKFSDLGDGKVLVKLTGERSQDLKLIQVADLIFCTPSQWDSLSKRWRSMRSIQKVDFYICDELQLLGGFYGPLYEIVISRIRYMAVQLEKNIRVVGLSVSVANARDLGEWLGTSPQCIFNFSPKDRPNPLTIHLQSFSITHFPSLMLAMSKPIYRSLKNFISQRKSTIVFTPDRKVAKQLAFDLVTFSMADE--DEYLFSLMEN-EAF-NKVEDAALQQSLKHGIAYISEITSSNDQNIVQYLYRHGLIKVLIASRDVIYSLKAKSNAVIVMGTQYYDGKEHRYIDYPISELLQMLGFTASIGSSELSQVILMTVTTKKEYYKKFLNEPLPMESHLQVWLHDAFVSEISTQTIESKQDAVDWLTWSYMYRRLVANPAYYGLQDITHESVSEFLSDLVETTMNDLSEARLITVDDEDDSCVALNLAMIASHYGITYITMQTFALSLSERTKMKGLLEIVTSAAEYEQLPIRKYEDIVLERIHSRLPVRLSNPNYEDPHTKSFILLAAHFSRFELPPGLVIDQKFILTRVHNLLGACVDTLSSEGHLIACIRPMEMSQMVTQALWDRDSPLKQIPYFDDALIERCNKEGVHDVFDIIDLDDEKRTELLHMDNAHLAKCAEFINKYPDIDIDFEIEDSEDVHANSPSVLIVQLTRELEEDEEVDTTVIAPYFPAQKTEHWWLVISDDK--TLLAIKKITLGRSLTTKMEFVPPAMGTLKYKLSCFSDSYMGVDYEKEFECNV 2164
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. SwissProt
Match: gi|75334138|sp|Q9FNQ1.1|DEXHE_ARATH (RecName: Full=DExH-box ATP-dependent RNA helicase DExH14; AltName: Full=BRR2 homolog C; Short=AtBRR2C; AltName: Full=Pre-mRNA-splicing helicase BRR2C) HSP 1 Score: 1569.29 bits (4062), Expect = 0.000e+0 Identity = 797/1887 (42.24%), Postives = 1201/1887 (63.65%), Query Frame = 0
Query: 266 TRSALHPSDIDAHWLQRELSKYFPDANVSQQKSKEVLEVLERAMDK----RECENKLVLLLGYDCFDFIKILVTNKNMIVYSIRLKLCRNEEEQEKLMAEMRQSKTLSKMLDMLEGNQVT---EAAKE-----RKAAKPSLEIEEIPVQPALQILNLEELAFAK----------GSHFRANKRCQLPEGSFRKQEKGYEEVHVPALKPKALGDNEVNVAIESLPVYVRPAFEGYQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKS-QVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQLLKPNLSEIELFRIFSLSGEFKHIGVRDEEKLELHKLMERV-PIPVKESVEEPSAKINILLQAYISHLQFDGFALMSDMVFVTQSASRLLRAIFEIVLVHGWAQLADKTLSLCKMIDRRLWQSMSPLRQFKK-IPMDIIKKIEKKNFSFERFYDLGPNEIGELIRMPKLGKAIHKFIHQFPKLDLISHIQPITRSTLSIELTITPDFQWDDKAHGHSQGFWIFVEDVDSEVVLHHEFFLLKKSFSQDE-HSVKMFVPIFEPLPPQYFIRVVSDRWIGSETVLPVSFRHLVLPEKNLPPTELLDLQPLPVTALRNEAFEGIYSNKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLRLFASDSEVRCVYMAPLQAVAEIAYNEWHSKF-SPLGMRTVLLTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKHSRRKPVIIYVPSRKQTRLTAIDILTFAAAESNPDCFLHADFDDIKGFVDKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPGQDVDAKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCIAIEDEMDTSPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIVASSAEFEDIPLRHGEEALLRSLSNRLPHKITSGKFNDPHVKAQILVQAHLSRIQLS-AELQQDAELIVSKAIRLIQACVDVLSSNGWLAPAIAAMELSQMVTQAMW-NKESYLKQIPHLTQEVIERCVANNIDSVFDIVELEDSDRDKLLPLSADEMAD-VARFCNRYPNIEMNYTLVDKDRLASGDVVNVEVKLEREDEVTGP-IIAPFFPTKREEGWWVVIGDPKSNTLLSIKRLTLQQKAKFKLDFVAPRVGKYNYT-LFFMSDSYLGCDQEYKL 2120
T++ L + WL+ + + N SQ +E+ + R +D E L+ L+G F+ ++ L+ ++ IV +I Q L ++ S T S+M G QVT E+AK+ RK K + ++ ++ + N L A GS + LP+G+ RK KGYEEV +P + E + I+ L + + AF GY+SLNRIQS++ T ++++N+L+CAPTGAGKTN+A++++L EI +H DG + +EFKI+YVAPMK+L E+ +FS+RLA N+ V ELTGD Q++K ++ ETQ+IV TPEKWD+ITRK + + + LV+L+IIDE+HLL+DDRG V+E++VART+R +E +Q +R+VGLSATLP+Y VA FLRVN TGLFYFD+SYRPV L QQ+IGITE R++L+NE+ +KKV+ + Q ++FVHSRK+T+KTA L D+ + +TL F E ++++ + + +N DL GF IHHAGM R DR+L E LF+D ++VLV T+TLAWGVNLPAHTV+IKGTQ+Y G W +LG LDV+Q+ GRAGRPQFD GEGI+IT+H +L +YL L QLP+ESQ I L D LNAE++LGT+ +++A WLGYTYL +RM NP YGI +E + DP L + +LV AA L+K+ +++++ K+G TELGR+ASH+Y Y ++ T+N++LK +++E E+ + + S EF++I VR+EE+ EL L P+ VK KI+IL+Q YIS D F+L+SD +++ S +R++RA+FEI L GW ++ L CK +DR+LW PLRQF++ +P DI++K+E++ + Y++ EIG LIR G+ + + + FP + L + + PITR+ L ++L ITP+F W D+ HG + +WI +ED +++ + H + F L K ++ E + VPIFEP PPQY++ VSD W+ +ET +SF +L LPE TELLDL+PLPVT+L N+ +E +Y K + FNP+QTQ F+VLY++D+NVL+GAP GSGKT+ E AMLRLF++ +++ VY+APL+A+ N+W +PLG V +TG+ + DL + +IIISTPEKWD +SR W R V+ + L + DEIHL+G GP++EV+ SRMRYISSQ ++ +R V +++ANA DLA+WLG G FNF P+VRP+P+E++IQG + R+ +M +P + AI HS KPV+I+V SR+QTRLTA+D++ FAA++ +P FL +D++ + +ITD+ L+ TL G+G H GL+ DRS VE LF + +QVLV + +L WGVNL A+LVII T+++ GK Y D+ LT++LQM+G A RP D K V+L KK +KKFLYEP P+ES L LHDHFNAEIV+ TI NK+DAV YLTWT ++RRL NP YYG++G + +LS +V+ T +LE S C+ + +E P LG IA+ YY+ Y T+ +F ++ T + + I+A ++E++++P+RH EE ++LS+R+ + + + +DPHVKA +L QAH S++ L ++ D + ++ ++IR++QA +D+ +++GWL+ ++ M L QMV Q MW +++S L IP + ++ A I ++ ++ L R+ L ++ + A +++ R+P I+MN L KD +E++LE+ + +AP FP ++E WW+V+GD ++ L ++KR++ + +++ + P + + T L +SD YLG +QE+ +
Sbjct: 282 TKNNLSAGKFNLSWLRDACGRMVRETN-SQLSREELAMAICRFLDSDKPGEEIAGDLLDLVGDGAFETVQDLIMHRKEIVDAI-------HHGQMILKSDKAASNTQSRMPTY--GTQVTVQTESAKQIEKLRRKEEKKNKRNADLGLESEISEANFSSLLEASEKKTAFEDLIGSGEANSLALALPQGTVRKHLKGYEEVFIPPTPTAQMKPGEKLIEIKELDDFAQAAFHGYKSLNRIQSRIFQTVYHTNENILVCAPTGAGKTNIAMISVLHEIKQHFR-DGYLHKNEFKIVYVAPMKALAAEVTSAFSRRLAPLNMVVKELTGDMQLTKTELEETQMIVTTPEKWDVITRKSSDMSMSMLVKLLIIDEVHLLNDDRGAVIEALVARTLRQVESTQTMIRIVGLSATLPSYLQVAQFLRVNTDTGLFYFDSSYRPVPLAQQYIGITEHNFAARNELLNEICYKKVVDSIKQGHQAMIFVHSRKDTSKTAEKLVDLARQYETLDLFTNETHPQFQLMKKDVMKSRNKDLVKFFEAGFGIHHAGMLRSDRTLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDAKAGGWKDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVVLGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWEEIIADPSLSLKQRALVADAARSLDKAKMMRFDEKSGNFYCTELGRVASHFYIQYSSVETYNEMLKRHMNESEIINMVAHSSEFENIVVREEEQHELETLARSCCPLEVKGGPSNKHGKISILIQLYISRGSIDAFSLVSDASYISASLARIMRALFEICLRKGWCEMTLFMLEYCKAVDRQLWPHQHPLRQFERDLPSDILRKLEERRDDLDHLYEMEEKEIGALIRYNPGGRLVKQHLGYFPSIQLAATVSPITRTVLKVDLLITPNFIWKDRFHGTALRWWILIEDTENDYIYHSDLFTLTKRMARGEPQKLSFTVPIFEPHPPQYYVHAVSDSWLHAETYFTISFHNLALPEARTSHTELLDLKPLPVTSLGNKLYESLY--KFSHFNPIQTQIFHVLYHTDNNVLVGAPTGSGKTISAELAMLRLFSTQPDMKVVYIAPLKAIVRERMNDWKKHLVAPLGKEMVEMTGDYTPDLVALLSADIIISTPEKWDGISRNWHTRSYVKKVGLVILDEIHLLGADRGPILEVIVSRMRYISSQTERSVRFVGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPIEVHIQGYPGKYYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLSVSEEDLQMVLSQITDQNLRHTLQFGIGLHHAGLNDHDRSAVEELFTNNKIQVLVSTSTLAWGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTEILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLKEKLHDHFNAEIVSGTIGNKEDAVHYLTWTYLFRRLMANPAYYGLEGTQDETICSYLSRLVQTTFEDLEDSGCLKV-NEDSVEPTMLGTIASQYYLCYMTVSMFGSNIGPDTSLEAFLHILAGASEYDELPVRHNEENYNKTLSDRVRYPVDNNHLDDPHVKANLLFQAHFSQLALPISDYNTDLKSVLDQSIRILQAMIDICANSGWLSSSLTCMRLLQMVMQGMWSDQDSSLWMIPCMNDLLLGSLTARGIHTLHQLLNLP---RETLQSVTENFPASRLSQDLQRFPRIQMNVRLQKKDSDGKKKPSTLEIRLEKTSKRNSSRALAPRFPKVKDEAWWLVLGDTSTSELFAVKRVSFTGRLITRME-LPPNITSFQDTKLILVSDCYLGFEQEHSI 2150
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. nr
Match: gi|1325304321|ref|XP_023333749.1| (putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Eurytemora affinis]) HSP 1 Score: 3217.17 bits (8340), Expect = 0.000e+0 Identity = 1511/2142 (70.54%), Postives = 1814/2142 (84.69%), Query Frame = 0
Query: 1 MADAAARSLQYEYKANSNLVLQADTRLIEKRGRDESTGEVISLTGKLLGTKMGDRAVRTRPTELKAQEEARAAKKAKARRGRDEQAVGLRAGQSVLAQDAAGLEGALYQPKTAETRQTYEVLLSFIQEALGDQPRDILQGAVDEVLLTLKNSGTKDRDKKGETESLLGASLSEERFALLVNLGKKITDFALEGREEEGGTKAAGEDIDETYGINVQFQDSEEEASEEE-------EEAADGDE--AEDEEMVQAPDTGRSGLRVDKDEEGQSRQTRSALHPSDIDAHWLQRELSKYFPDANVSQQKSKEVLEVLERAMDKRECENKLVLLLGYDCFDFIKILVTNKNMIVYSIRLKLCRNEEEQEKLMAEMRQSKTLSKMLDMLEGNQVTEAAK-------ERKAAKPSLEIEEIPVQPALQILNLEELAFAKGSHFRANKRCQLPEGSFRKQEKGYEEVHVPALKPKALGDNEVNVAIESLPVYVRPAFEGYQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKSQVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQLLKPNLSEIELFRIFSLSGEFKHIGVRDEEKLELHKLMERVPIPVKESVEEPSAKINILLQAYISHLQFDGFALMSDMVFVTQSASRLLRAIFEIVLVHGWAQLADKTLSLCKMIDRRLWQSMSPLRQFKKIPMDIIKKIEKKNFSFERFYDLGPNEIGELIRMPKLGKAIHKFIHQFPKLDLISHIQPITRSTLSIELTITPDFQWDDKAHGHSQGFWIFVEDVDSEVVLHHEFFLLKKSFSQDEHSVKMFVPIFEPLPPQYFIRVVSDRWIGSETVLPVSFRHLVLPEKNLPPTELLDLQPLPVTALRNEAFEGIYSNKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLRLFASDSEVRCVYMAPLQAVAEIAYNEWHSKFSPLGMRTVLLTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKHSRRKPVIIYVPSRKQTRLTAIDILTFAAAESNPDCFLHADFDDIKGFVDKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPGQDVDAKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCIAIEDEMDTSPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIVASSAEFEDIPLRHGEEALLRSLSNRLPHKITSGKFNDPHVKAQILVQAHLSRIQLSAELQQDAELIVSKAIRLIQACVDVLSSNGWLAPAIAAMELSQMVTQAMWNKESYLKQIPHLTQEVIERCVANNIDSVFDIVELEDSDRDKLLPLSADEMADVARFCNRYPNIEMNYTLVDKDRLASGDVVNVEVKLEREDEVTGPIIAPFFPTKREEGWWVVIGDPKSNTLLSIKRLTLQQKAKFKLDFVAPRVGKYNYTLFFMSDSYLGCDQEYKLSVEIKD 2126
MAD ARSLQYEYKANSNLVLQAD RLIE+R +DE+TGEV SL GK++GTKMGDR +R +P ++ +K + R+ RDE + G++ L + + G Y PKT ET+QTYE+LLSFIQEALGDQPRDIL GA DE+L++LKN ++KK ETE+ LG L+EERFALLVNLGKKITDF + + E IDETYGI VQF + EEE E+ E D DE +EDE M+ DTG G K + ++ + LHP DIDAHWLQR+LSKY+ +A SQ+KS EVLE+L+++ ++RE EN+LVLLLGYDCFDFIK+L+ N+NMI+Y L ++E E+ + A+M Q L +L LEG E + + S EE+ + LNL+ELAF++GSH ANKRCQLP+GS+RKQ+KGYEEVHVPALKPK G +E V IESLP Y +PAFEG+++LNRIQS+L C+ SD+N+LLCAPTGAGKTNVALL ML EIGKHVN DGSI AD FKIIYVAPM+SLVQEM G+F KRLA +NI V ELTGD+Q++KEQI++TQIIVCTPEKWDIITRKG ERTYTQLV+L+I DEIHLLHD+RGPVLE++VAR+IR++E +QEEVRL+GLSATLPNYQDVATFLRVN KTGLFYFDNS+RPV LEQQFIG+TEKKPMKR+ MNE+V++K + AGK+QVL+FVHSRKET KTARA++D CLE+DTLG FLKEGSASMEVLR+E+EQVKN +LKDLLPYGFAIHHAGM+RVDR+LVEDLFADRHIQVLVST+TLAWGVNLPAHTVIIKGTQIY+PDKG+WVEL ALDVLQMLGRAGRPQ+DTKGEGILITNHSELQ+YLSL NQQLP+ESQMI KLPDMLNAE++ GT+QT+ DA WLGYTYLF+RM+RNPTLYGIP +A E+DPKLE++RA+LVHTAA LEKS L+KY+RK+G Q TELGRI+SHYYC ++TM T+N LLKPNLSEIELFR+FSLSGEF++I VRDEEKLEL KLMERVPIP+KES+EEPSAK+NILLQAYIS L+ +GFALM+DMV+VTQSA+RL+RAIFEIVL GWAQL DK L+L KM+D+R+WQSMSPLRQF+K+P ++IKKIEKK+F +ER YDLGPNEIGELIRMPKLGK IHK++HQFPKLDL+SHIQPITRSTL +ELT+TPDFQWD+K HGHS+ FWI VEDVDSE++LH+EFFLLKK F++DEH +K FVP+FEPLPP YFIRV+SDRWI SET LPVSFRHL+LPEKN PPTELLDLQPLPV+ALRN+ +E +Y QFNP+QTQ FN +YN D+NV +GAP GSGKT+C E A++RLF+ + E RCVY+ P A+A+IAY +WH KF+PLG++ V+LTGET TDLKL+A+GN+IISTPEKWDVLSRRWKQRKNVQNI LF+ DE+ L+GG GPV+E+VCSRMRYISSQL+K IRI+A SS++N KD++ WLG G N+TFNFHPNVRP+PLEL+IQG N++HNASR+++MA+P +NAI KH+ RKPVI++VPSRKQTRLTAID+LT+AAAE+ PD FLHA+ +DI+ F+ KI DKTL+ETL QGV ++HEGLS DR +VESLFDSGA+QV+V +R+L W + +QA+LVIIMDTQ+Y+GK HAYHDY +TD+LQM+G ANRP +D DAKCVL+CQ SKKD FKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDY+TWT +YRR+TQNPNYY +QG++YRHLSDHLSE+VE TLSELEHSKCI++ED+MDT+PLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEI+++SAE+ED+P+RHGE+ LLR+L+ RLP+K+ S KFNDPHVKA +L+QAHLSR+QLSAELQQD E+I+SKAIRLIQACVDVLSSNGWL+PAIAAMEL+QMVTQAMW+K+SYLKQ+PH +EVI+R V ++SVFDI+E+ED DR+KLL +S +MADVARFCNRYPNIE+ Y + +K+ L SG VN+EVKLEREDEVTGP+IAPFFPTKREEGWWV+IGD KSN+LLSIKRLTLQQKAKFKLDFVAPR G Y+Y+L+FM DSY+GCDQEYK +++IK+
Sbjct: 1 MADQTARSLQYEYKANSNLVLQADLRLIERRAKDEATGEVHSLVGKMVGTKMGDRYLRDKP--------KKSDEKREKRQKRDEAQQKFKGGKAQLTDKLSEVAGVFYTPKTQETKQTYEILLSFIQEALGDQPRDILAGAADEILMSLKNDKVSSKEKKKETEAFLGP-LAEERFALLVNLGKKITDFGHDPNVNKD------EGIDETYGIPVQFDNYEEEGDGEDVYGEVRGERGEDSDEDMSEDEPML-GEDTGIRGYSDVKSSDSFAKNEK-GLHPLDIDAHWLQRKLSKYYEEAITSQKKSIEVLEILQKSDNQRELENQLVLLLGYDCFDFIKMLLKNRNMIMYCTLLASAQSEIEKTSIRAKMSQDPDLVSILKQLEGEGGDEEGAGGGLQKTSKGGNRESQMCEEVA---RCKQLNLDELAFSQGSHLMANKRCQLPDGSYRKQKKGYEEVHVPALKPKPFGADEHLVPIESLPAYAQPAFEGFKALNRIQSRLYKACMESDENLLLCAPTGAGKTNVALLTMLHEIGKHVNEDGSINADNFKIIYVAPMRSLVQEMTGNFGKRLAKYNITVSELTGDNQLTKEQIAQTQIIVCTPEKWDIITRKGGERTYTQLVKLVIFDEIHLLHDERGPVLETLVARSIRNIETTQEEVRLIGLSATLPNYQDVATFLRVNPKTGLFYFDNSFRPVPLEQQFIGLTEKKPMKRYACMNEIVYEKTVENAGKNQVLIFVHSRKETGKTARAIRDQCLEKDTLGGFLKEGSASMEVLRTEAEQVKNLELKDLLPYGFAIHHAGMSRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPDKGKWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQMISKLPDMLNAEIVSGTVQTVSDATQWLGYTYLFIRMLRNPTLYGIPVDAREDDPKLEQWRANLVHTAACALEKSALIKYDRKSGNFQTTELGRISSHYYCTHQTMYTYNTLLKPNLSEIELFRVFSLSGEFRNITVRDEEKLELQKLMERVPIPIKESIEEPSAKVNILLQAYISQLKLEGFALMADMVYVTQSAARLIRAIFEIVLFRGWAQLVDKCLALSKMVDKRMWQSMSPLRQFRKMPEEVIKKIEKKSFPWERLYDLGPNEIGELIRMPKLGKTIHKYVHQFPKLDLVSHIQPITRSTLRMELTLTPDFQWDEKVHGHSEAFWILVEDVDSEIILHNEFFLLKKKFAEDEHVIKFFVPVFEPLPPLYFIRVISDRWIASETQLPVSFRHLILPEKNPPPTELLDLQPLPVSALRNKEYENLYKENFVQFNPIQTQVFNTIYNGDENVFVGAPTGSGKTVCAEMAIMRLFSQNPEGRCVYVTPKDALADIAYADWHGKFTPLGLKVVILTGETGTDLKLLAKGNLIISTPEKWDVLSRRWKQRKNVQNINLFIVDELQLLGGEGGPVLEIVCSRMRYISSQLEKAIRILALSSSLSNCKDVSQWLGAGNNSTFNFHPNVRPVPLELHIQGFNMTHNASRIVSMAKPTYNAIVKHAPRKPVIVFVPSRKQTRLTAIDLLTYAAAENQPDRFLHAEQEDIEAFLAKIQDKTLRETLSQGVAFMHEGLSSTDRRLVESLFDSGAIQVVVAARALVWALTIQAHLVIIMDTQYYNGKLHAYHDYPVTDILQMLGRANRPTEDTDAKCVLMCQNSKKDFFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYMTWTYIYRRMTQNPNYYNLQGVTYRHLSDHLSEMVETTLSELEHSKCISVEDDMDTAPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIISASAEYEDLPIRHGEDGLLRNLATRLPNKLQSAKFNDPHVKANLLLQAHLSRMQLSAELQQDTEIILSKAIRLIQACVDVLSSNGWLSPAIAAMELAQMVTQAMWSKDSYLKQLPHFNKEVIDRSVEKGVESVFDIMEMEDEDRNKLLSMSDQQMADVARFCNRYPNIELQYEVHNKEDLHSGSSVNIEVKLEREDEVTGPVIAPFFPTKREEGWWVIIGDSKSNSLLSIKRLTLQQKAKFKLDFVAPRPGNYSYSLYFMCDSYMGCDQEYKFNLDIKE 2122
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. nr
Match: gi|1227975542|ref|XP_021919263.1| (putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Zootermopsis nevadensis] >gi|646716498|gb|KDR19736.1| Putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Zootermopsis nevadensis]) HSP 1 Score: 3130.5 bits (8115), Expect = 0.000e+0 Identity = 1495/2161 (69.18%), Postives = 1805/2161 (83.53%), Query Frame = 0
Query: 1 MADAAARSLQYEYKANSNLVLQADTRLIEKRGRDESTGEVISLTGKLLGTKMGDRAVRTRPTELKAQEEARAAKKAKARRGRDEQAVGLR--AGQSVLAQDAAGLEGALYQPKTAETRQTYEVLLSFIQEALGDQPRDILQGAVDEVLLTLKNSGTKDRDKKGETESLLGASLSEERFALLVNLGKKITDFALEGREEEGGTKAAGEDIDETYGINVQFQDSEEEASEE-------EEEAADGDEAEDEEMVQAPDTGRSGLRVDKDEEGQSRQTRSALHPSDIDAHWLQRELSKYFPDANVSQQKSKEVLEVLERAMDKRECENKLVLLLGYDCFDFIKILVTNKNMIVYSIRLKLCRNEEEQEKLMAEMRQSKTLSKMLDMLEGNQ-----------VTEAAKERKAAKPSLEIEEIPVQPALQILNLEELAFAKGSHFRANKRCQLPEGSFRKQEKGYEEVHVPALKPKALGDNEVNVAIESLPVYVRPAFEGYQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKSQVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQLLKPNLSEIELFRIFSLSGEFKHIGVRDEEKLELHKLMERVPIPVKESVEEPSAKINILLQAYISHLQFDGFALMSDMVFVTQSASRLLRAIFEIVLVHGWAQLADKTLSLCKMIDRRLWQSMSPLRQFKKIPMDIIKKIEKKNFSFERFYDLGPNEIGELIRMPKLGKAIHKFIHQFPKLDLISHIQPITRSTLSIELTITPDFQWDDKAHGHSQGFWIFVEDVDSEVVLHHEFFLLKKSFSQDEHSVKMFVPIFEPLPPQYFIRVVSDRWIGSETVLPVSFRHLVLPEKNLPPTELLDLQPLPVTALRNEAFEGIYSNKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLRLFASDSEVRCVYMAPLQAVAEIAYNEWHSKFSP-LGMRTVLLTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKHSRRKPVIIYVPSRKQTRLTAIDILTFAAAESNPDCFLHADFDDIKGFVDKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPGQDVDAKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCIAIEDEMDTSPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIVASSAEFEDIPLRHGEEALLRSLSNRLPHKIT-SGKFNDPHVKAQILVQAHLSRIQLSAELQQDAELIVSKAIRLIQACVDVLSSNGWLAPAIAAMELSQMVTQAMWNKESYLKQIPHLTQEVIERCVANNIDSVFDIVELEDSDRDKLLPLSADEMADVARFCNRYPNIEMNYTLVDKDRLASGDVVNVEVKLEREDEVTGPIIAPFFPTKREEGWWVVIGDPKSNTLLSIKRLTLQQKAKFKLDFVAPRVGKYNYTLFFMSDSYLGCDQEYKLSVEIKDVGDVKRRPENSDT 2139
MADAAAR LQYEYKANSNLVLQAD RLIE+R RDE+TGEV+SL GKL GT+MGDR RTRP +AA++ R+ RDE G ++L++ + G LY+PKT ETRQTYEVLLSFIQEALGDQPRDIL GA DEVL LKN K+R+KK ETESLLG +L+EERFALLVNLGKKITDF G EE+ T A E+IDETYGINVQF++SEEE E+ EE+ +G+EA+ + + A + G + + + +LHP DIDA+WLQR LSK++ DA VSQ K+ EVL VL A D R+CEN+LVLLLGYDCFDFIK+L +++MI+Y L ++E E++K+ +M + +L+++L L+ + + A++ ++ A + V + Q+L+LE+L FA+GSHF ANKRCQLP+GSFRKQ KGYEEVHVPALK K +E A+E LP YV+PAFE +++LNRIQSKL L+SD+N+LLCAPTGAGKTNVALL MLREIGKH+N DG+I DEFKIIYVAPM+SLVQEMVG+FSKRL +N+ V ELTGD Q+++EQI TQIIVCTPEKWDIITRKG E+T+TQLVRL+IIDE+HLLHD+RGPVLE++VARTIR++E +QE+VRLVGLSATLPNYQDV+TFLR+ ++TGLFYFDNS+RPV+LEQQ+IG+TEKK +KR Q+MNE+V++KVM AG++QVLVFVHSRKET KTARA++DMCLE+DTLG FL+EGSASMEVLR+E+EQVKN++LKDLLPYGFAIHHAGM RVDR+LVEDLFADRHIQVLVST+TLAWGVNLPAHTVIIKGTQ+Y+P+KGRWVELGALDVLQMLGRAGRPQ+DTKGEGILITNHSELQ+YLSL NQQLP+ESQ+I KLPDMLNAE++LGTIQ + DAVTWLGYTYL++R++R TLYGI + ++ DP LE++RA L+HTAA+ L++S L+KY+RKTG Q TELGRI+SHYYC ++TM T+NQLLKP LSEIELFR+FSLSGEF++I VR+EEKLEL KLM+RVPIP+KES+EEPSAK+N+LLQAYIS L+ +GFALMSDMV+VTQSA+RL+RAIFEIVL GWAQLADK LSLCKM+DRR+WQSMSPLRQF+K+P +I+KKIEKKNF +ER YDL PNEIGELIR+PKLGK +HK++HQFPKL+L +HIQPITRSTL +ELTITPDFQWD+K HG S+ FWI VEDVDSEV+LHHE+FLLK F+ DEH VK FVP+FEPLPPQYF+R+VSDRWIG+ET LPVSFRHL+LPEKNLPPTELLDLQPLPVTALRN AFE +Y K QFNP+QTQ FN +YNSDDN+ IGAP GSGKT EFA+LRL + + E RCVY+ P A+AE+ + +W KF LG + VLLTGET TDLKL+A+G +II T EKWDVLSRRWKQRKNVQNIQLF+ DE+ L+GG GPV+EVVCSRMRYISSQ+++ IRIV+ +S+A+A+D+A WLGC NATFNFHP+VRPIPLEL++QG N++HNASRL+AM +PV+N+I KHS KPVI++VP+RKQ RLTAID+LTF AAE P+ F HA+ +DIK F+D++TDKTLKETL QGV Y+HEGL+ +D +VE LFDSGAVQV VV+R+LCWGVN+ A+LV+IMDTQFY+GK HAY DY +TDVLQM+G ANRP +D DAKCVL+CQ+SKKD FKKFL E LP+ESHLDH LHDHFNAEIVTKTIENKQDAVDYLTWT +YRRLTQNPNYY +QG+++RHLSDHLSE+VE TL++LE SKCI+IEDEMD PLNLGMIAAYYYINYTTIELFS+SLN+KTKIRGL+EI++S+AE+ED+P+RH E+ LLRSL+ RLP+K+ S K+NDPH K +L+QAHLSR+QL AELQ D E I+ KAIRLIQACVDVLSSNGWL+PA+AAMEL+QMVTQAMW+K+SYLKQ+PH T ++I+RC +++VFDI+ELED DR KLL L+ +MADVARFCNRYPNIEM+Y + DKDR+ SG VNV V+LEREDEVTGP+IAPF+P KREEGWWVVIGDPK N+LLSIKRLTLQQKAK KLDFVAP G + YTL+FMSD+YLGCDQEYK S+ VGD + SD+
Sbjct: 1 MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVMSLVGKLDGTRMGDRHQRTRPV--------KAAERKAKRQKRDEAQYDFTRMKGATLLSEGVDEMVGILYRPKTQETRQTYEVLLSFIQEALGDQPRDILCGAADEVLAVLKNDRLKEREKKRETESLLG-NLAEERFALLVNLGKKITDF---GTEEKVAT--ADENIDETYGINVQFEESEEEDDEDIYGEVREEEDEEEGEEAKLDGTIHAENLGGA----------EEMKKEKSLHPLDIDAYWLQRRLSKFYDDAMVSQAKAAEVLSVLRDAGDDRDCENQLVLLLGYDCFDFIKLLKKHRHMILYCTLLASSQSESERQKIRDKMNEDSSLARILRQLDTGKGEDDGGGEDGGIARASRRKEQADEGTDGAGGQVPGSRQLLDLEDLTFAQGSHFMANKRCQLPDGSFRKQRKGYEEVHVPALKAKPFAPDESLYAVEKLPKYVQPAFEDFKTLNRIQSKLYKAALDSDENILLCAPTGAGKTNVALLCMLREIGKHINADGTINTDEFKIIYVAPMRSLVQEMVGNFSKRLNSYNLTVSELTGDHQLTREQIQATQIIVCTPEKWDIITRKGGEKTFTQLVRLVIIDEVHLLHDERGPVLEALVARTIRNIETTQEDVRLVGLSATLPNYQDVSTFLRIKQETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNEIVYEKVMEHAGRNQVLVFVHSRKETGKTARAIRDMCLEKDTLGKFLREGSASMEVLRTEAEQVKNHELKDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQLISKLPDMLNAEIVLGTIQNVRDAVTWLGYTYLYIRLLRASTLYGISHDRLKEDPLLEQYRADLIHTAALHLDRSGLVKYDRKTGHFQVTELGRISSHYYCTHDTMATYNQLLKPTLSEIELFRVFSLSGEFRNITVREEEKLELQKLMDRVPIPIKESIEEPSAKVNVLLQAYISQLKLEGFALMSDMVYVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKMPEEIVKKIEKKNFPWERLYDLNPNEIGELIRVPKLGKTVHKYVHQFPKLELSTHIQPITRSTLRVELTITPDFQWDEKLHGASEAFWILVEDVDSEVILHHEYFLLKSKFATDEHLVKFFVPVFEPLPPQYFLRIVSDRWIGAETQLPVSFRHLILPEKNLPPTELLDLQPLPVTALRNPAFESLYLGKFPQFNPIQTQVFNAVYNSDDNIFIGAPTGSGKTTIAEFAVLRLLSQNLEGRCVYLVPRDALAELVFVDWQQKFGGVLGRKVVLLTGETGTDLKLLAKGQVIICTAEKWDVLSRRWKQRKNVQNIQLFIVDELQLIGGEDGPVLEVVCSRMRYISSQIERQIRIVSLSASLADARDVAQWLGCNANATFNFHPSVRPIPLELHVQGFNVTHNASRLIAMTKPVYNSILKHSPHKPVIVFVPTRKQARLTAIDLLTFTAAEGQPNRFFHAEEEDIKPFLDRMTDKTLKETLSQGVAYIHEGLTPSDHRLVEQLFDSGAVQVAVVTRNLCWGVNIAAHLVVIMDTQFYNGKIHAYEDYPVTDVLQMVGRANRPLEDDDAKCVLMCQSSKKDFFKKFLNESLPVESHLDHRLHDHFNAEIVTKTIENKQDAVDYLTWTFIYRRLTQNPNYYNLQGVTHRHLSDHLSELVENTLNDLEQSKCISIEDEMDCLPLNLGMIAAYYYINYTTIELFSLSLNNKTKIRGLLEIISSAAEYEDVPVRHREDNLLRSLAARLPNKLAGSPKYNDPHNKTNLLLQAHLSRLQLGAELQGDTEAILGKAIRLIQACVDVLSSNGWLSPAVAAMELAQMVTQAMWSKDSYLKQLPHFTPDIIKRCTEKGVETVFDIMELEDDDRSKLLQLTDAQMADVARFCNRYPNIEMSYEVQDKDRIHSGSSVNVIVQLEREDEVTGPVIAPFYPQKREEGWWVVIGDPKMNSLLSIKRLTLQQKAKVKLDFVAPSPGHHTYTLYFMSDAYLGCDQEYKFSIH---VGDFQSAESESDS 2134
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. nr
Match: gi|1080042126|ref|XP_018562101.1| (putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Anoplophora glabripennis]) HSP 1 Score: 3126.27 bits (8104), Expect = 0.000e+0 Identity = 1492/2163 (68.98%), Postives = 1791/2163 (82.80%), Query Frame = 0
Query: 1 MADAAARSLQYEYKANSNLVLQADTRLIEKRGRDESTGEVISLTGKLLGTKMGDRAVRTRPTELKAQEEARAAKKAKARRGRDEQAVGLR--AGQSVLAQDAAGLEGALYQPKTAETRQTYEVLLSFIQEALGDQPRDILQGAVDEVLLTLKNSGTKDRDKKGETESLLGASLSEERFALLVNLGKKITDFALEGREEEGGTKAAGEDIDETYGINVQFQDSEEEASEEE--------EEAADGDEAEDEEMVQAPDTGRSGLRVDKDEEGQSRQTRSALHPSDIDAHWLQRELSKYFPDANVSQQKSKEVLEVLERAMDKRECENKLVLLLGYDCFDFIKILVTNKNMIVYSIRLKLCRNEEEQEKLMAEMRQSKTLSKMLDMLEGNQ---------VTEAAKERKAAKPSLEIEEIPVQPALQILNLEELAFAKGSHFRANKRCQLPEGSFRKQEKGYEEVHVPALKPKALGDNEVNVAIESLPVYVRPAFEGYQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKSQVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQLLKPNLSEIELFRIFSLSGEFKHIGVRDEEKLELHKLMERVPIPVKESVEEPSAKINILLQAYISHLQFDGFALMSDMVFVTQSASRLLRAIFEIVLVHGWAQLADKTLSLCKMIDRRLWQSMSPLRQFKKIPMDIIKKIEKKNFSFERFYDLGPNEIGELIRMPKLGKAIHKFIHQFPKLDLISHIQPITRSTLSIELTITPDFQWDDKAHGHSQGFWIFVEDVDSEVVLHHEFFLLKKSFSQDEHSVKMFVPIFEPLPPQYFIRVVSDRWIGSETVLPVSFRHLVLPEKNLPPTELLDLQPLPVTALRNEAFEGIYSNKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLRLFASDSEVRCVYMAPLQAVAEIAYNEWHSKFSP-LGMRTVLLTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKHSRRKPVIIYVPSRKQTRLTAIDILTFAAAESNPDCFLHADFDDIKGFVDKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPGQDVDAKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCIAIEDEMDTSPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIVASSAEFEDIPLRHGEEALLRSLSNRLPHKITS-----GKFNDPHVKAQILVQAHLSRIQLSAELQQDAELIVSKAIRLIQACVDVLSSNGWLAPAIAAMELSQMVTQAMWNKESYLKQIPHLTQEVIERCVANNIDSVFDIVELEDSDRDKLLPLSADEMADVARFCNRYPNIEMNYTLVDKDRLASGDVVNVEVKLEREDEVTGPIIAPFFPTKREEGWWVVIGDPKSNTLLSIKRLTLQQKAKFKLDFVAPRVGKYNYTLFFMSDSYLGCDQEYKLSVEIKDVGDVKRRPENSD 2138
MADAAAR LQYEYKANSNLVLQAD R IE+R RDE+TGEV+SL GKL GTKMGDRA RTRP + E R AK+ K RDE G ++L++ + G +Y+PKT ETRQTYEVLLSF+QEALGDQPRDIL GA DEVL LKN K+R+KK ETE+LLG ++EERFALLVNLGKKITDF EE E+IDETYGINVQF EE +E+ + +G+EA+++ + A + G G+ K E+ ALHP DIDA+WLQR LSK + DA VSQ K+ EVL VL A D RECEN+LVLLLGYDCFDFIK L ++ MI+Y L +++ E++K+ +M +L ++L +LE + + RK ++ V + +++ E+L F +GSHF ANKRCQLP+GSFRKQ KGYEEVHVPALKPK GDNE ++ LP YV+P FEG+++LNRIQS+L L SD+N+LLCAPTGAGKTNVALL M+REIGKH+NPDG+I AD+FKIIYVAPM+SLVQEMVG+F KRLA +NI V ELTGD Q+++EQI+ TQIIVCTPEKWDIITRKG E+T+T LVRLIIIDEIHLLHD+RGPVLE++VARTIR +E +QE+VRLVGLSATLPNYQDVA FLRV +GLF+FDNS+RPV+LEQQ+IG+TEKK +KR+Q+MNE+V++K M AG++QVL+FVHSRKET KTARA++DMCLE+DTLG FL+EGSASMEVLR+E+EQVKN++LKDLLPYGFAIHHAGM RVDR+LVEDLFADRHIQVLVST+TLAWGVNLPAHTVIIKGTQIY+P+KGRWVELGALDVLQMLGRAGRPQ+DTKGEGILITNHSELQ+YLSL NQQLP+ESQM+ KL DMLNAE++LGTIQ + DAVTWLGYTYL++RMMR PTLYGI + V+ D LE+ RA L+HTAA+ L++S L+KY+RKTG Q TELGRIASHYYC +ETM T+NQLLKP LSEIELFR+FSLSGEFK+I VR+EEKLEL KLMERVPIP+KES+EEPSAK+N+LLQAYIS L+ +GFALMSDMV+VTQSASRL+RAIFEIVL GWAQLADK+L+LCKMID+R+WQSMSPLRQF+K+P +I+KKIEKKNF +ER YDLGPNEIGELIR+PKLGK IHK++HQFPKL+L +HIQPITRS L +ELT+TPDFQWD+K HG S+ FWI VEDVDSEV+LHHE+FLLK + QDEH VK FVPIFEPLPPQYF+R+VSDRWIG+ET LPVSFRHL+LPEKN PPTELLDLQPLP+TALRNE +EG+YS+K QFNP+QTQ FN +YN DDN+ IGAP GSGKT EFA+LRLF + E RCVY+ P A+AE+ + EWH+KF LG + VLLTGET TDLKL+A+G +II+T EKWDVLSRRWKQRKNVQN+ LF+ DE+HL+GG GPV+EVVCSRMRYISSQ++KPIRI+A +S+ + KD+A WLGC NATFNFHP+VRPIPLEL++QG+N +HNASRL+AMA+PV+NAI ++S KP I++VP+RKQ RLTAID+LT+AA+E P+ F HA+ +DIK F+D++TDKTLKETL QGV Y+HEGL+ +D +VE LFDSGAVQ+ VV+R LCW VN+ A+LVIIMDTQFY+GK HAY DY +TDVLQM+G ANRP +D D+KCVL+CQ+SKKD FKKFL +PLP+ESHLDH LHDHFNAEIVTKTIENKQDAVDYLTWT +YRRLTQNPNYY +QG+++RHLSDHLSE+VE TLS+LE SKCI++EDEMD PLNLGMIAAYYYINYTTIELFS+SLNSKTKIRGL+EI++S+AE+EDIP+RH E+ +LR LS +LP+K+TS KFNDPHVK +L+QAHL R+QL AELQ D E +++KAIRLIQACVDVLSSNGWL+PA+AAMEL+QMVTQAMW+K+SYLKQ+PH ++I+RC +++VFDI+ELED DR KLL LS +MADVA+FCNRYPNIE+ Y ++DKD++ SG V+V V+LEREDEV+GP+IAPFFP KREEGWWVVIGDPKSN+LLSIKRLTLQQKA+ KLDFVAP G +NYTL+FMSD+YLGCDQEYK S+ DVGD + SD
Sbjct: 1 MADAAARQLQYEYKANSNLVLQADVRFIERRSRDEATGEVMSLVGKLTGTKMGDRAQRTRP----GKAEERKAKRQK----RDEAQYDFARMKGVTLLSEGVDEMVGIIYRPKTQETRQTYEVLLSFLQEALGDQPRDILCGAADEVLQVLKNDRLKEREKKKETETLLGP-IAEERFALLVNLGKKITDFG----NEENKANTGEENIDETYGINVQFGGGSEEEDDEDMYGEVREEMDDEEGEEAKEDSAIHAENLG--GVEEMKKEK--------ALHPLDIDAYWLQRRLSKIYDDAMVSQAKATEVLNVLRDAGDDRECENQLVLLLGYDCFDFIKQLKKHRQMILYCTLLAKSQSDSERQKIKDKMSDDPSLHRILKLLETGKGDDDDEDDESASRSHRRKNDSDDMDTGSAQVAGSRHLIDFEDLVFQQGSHFMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFGDNEKLQPVDQLPKYVQPVFEGFKTLNRIQSRLYKAALESDENLLLCAPTGAGKTNVALLCMMREIGKHINPDGTINADDFKIIYVAPMRSLVQEMVGNFGKRLASYNITVSELTGDHQLTREQIAATQIIVCTPEKWDIITRKGGEKTFTSLVRLIIIDEIHLLHDERGPVLEALVARTIRMIESTQEDVRLVGLSATLPNYQDVAAFLRVKPDSGLFHFDNSFRPVALEQQYIGVTEKKALKRYQVMNEIVYEKTMEHAGRNQVLIFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAEQVKNHELKDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQMVSKLADMLNAEIVLGTIQNVRDAVTWLGYTYLYIRMMRQPTLYGIAHDHVKQDQLLEQHRADLIHTAALHLDRSGLVKYDRKTGQFQVTELGRIASHYYCTHETMQTYNQLLKPMLSEIELFRVFSLSGEFKNIAVREEEKLELQKLMERVPIPIKESIEEPSAKVNVLLQAYISQLKLEGFALMSDMVYVTQSASRLMRAIFEIVLHRGWAQLADKSLALCKMIDKRMWQSMSPLRQFRKMPEEIVKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELSTHIQPITRSMLKVELTVTPDFQWDEKLHGASEAFWILVEDVDSEVILHHEYFLLKAKYCQDEHLVKFFVPIFEPLPPQYFLRIVSDRWIGAETQLPVSFRHLILPEKNFPPTELLDLQPLPITALRNEKYEGLYSDKFPQFNPIQTQVFNSVYNGDDNIFIGAPTGSGKTTIAEFAILRLFERNPEGRCVYLVPKDALAELVFAEWHNKFGQNLGRKVVLLTGETGTDLKLLAKGQVIITTAEKWDVLSRRWKQRKNVQNVNLFIVDELHLIGGEDGPVIEVVCSRMRYISSQIEKPIRIIALSASLTDYKDVAQWLGCNANATFNFHPSVRPIPLELHVQGINNTHNASRLIAMAKPVYNAILRYSPHKPAIVFVPTRKQARLTAIDLLTYAASEGQPNKFFHAEEEDIKPFLDRMTDKTLKETLSQGVAYMHEGLTASDLRLVEQLFDSGAVQIAVVTRDLCWAVNIFAHLVIIMDTQFYNGKVHAYEDYPVTDVLQMVGRANRPLEDDDSKCVLMCQSSKKDFFKKFLSDPLPVESHLDHRLHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRLTQNPNYYNLQGVTHRHLSDHLSELVENTLSDLEQSKCISVEDEMDCVPLNLGMIAAYYYINYTTIELFSLSLNSKTKIRGLLEIISSAAEYEDIPVRHREDNILRQLSQKLPNKLTSPSGGQPKFNDPHVKTNLLLQAHLCRLQLGAELQGDTETVLAKAIRLIQACVDVLSSNGWLSPAVAAMELAQMVTQAMWSKDSYLKQLPHFNNDIIKRCTDKGVETVFDIMELEDDDRSKLLQLSDAQMADVAKFCNRYPNIELTYEVLDKDQIHSGSSVHVAVQLEREDEVSGPVIAPFFPQKREEGWWVVIGDPKSNSLLSIKRLTLQQKARVKLDFVAPSPGHHNYTLYFMSDAYLGCDQEYKFSI---DVGDFESSGSESD 2137
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. nr
Match: gi|91093851|ref|XP_970554.1| (PREDICTED: putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Tribolium castaneum] >gi|1004403382|gb|KYB29542.1| Putative U5 small nuclear ribonucleoprotein 200 kDa helicase-like Protein [Tribolium castaneum]) HSP 1 Score: 3116.25 bits (8078), Expect = 0.000e+0 Identity = 1483/2154 (68.85%), Postives = 1800/2154 (83.57%), Query Frame = 0
Query: 1 MADAAARSLQYEYKANSNLVLQADTRLIEKRGRDESTGEVISLTGKLLGTKMGDRAVRTRPTELKAQEEARAAKKAKARRGRDEQAVGLR--AGQSVLAQDAAGLEGALYQPKTAETRQTYEVLLSFIQEALGDQPRDILQGAVDEVLLTLKNSGTKDRDKKGETESLLGASLSEERFALLVNLGKKITDFALEGREEEGGTKAAGEDIDETYGINVQFQDSEEEAS-------EEEEEAADGDEAEDEEMVQAPDTGRSGLRVDKDEEGQSRQTRSALHPSDIDAHWLQRELSKYFPDANVSQQKSKEVLEVLERAMDKRECENKLVLLLGYDCFDFIKILVTNKNMIVYSIRLKLCRNEEEQEKLMAEMRQSKTLSKMLDMLEGNQVTEAAKERKAAKPSLEIEE----------IPVQPALQILNLEELAFAKGSHFRANKRCQLPEGSFRKQEKGYEEVHVPALKPKALGDNEVNVAIESLPVYVRPAFEGYQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKSQVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQLLKPNLSEIELFRIFSLSGEFKHIGVRDEEKLELHKLMERVPIPVKESVEEPSAKINILLQAYISHLQFDGFALMSDMVFVTQSASRLLRAIFEIVLVHGWAQLADKTLSLCKMIDRRLWQSMSPLRQFKKIPMDIIKKIEKKNFSFERFYDLGPNEIGELIRMPKLGKAIHKFIHQFPKLDLISHIQPITRSTLSIELTITPDFQWDDKAHGHSQGFWIFVEDVDSEVVLHHEFFLLKKSFSQDEHSVKMFVPIFEPLPPQYFIRVVSDRWIGSETVLPVSFRHLVLPEKNLPPTELLDLQPLPVTALRNEAFEGIYSNKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLRLFASDSEVRCVYMAPLQAVAEIAYNEWHSKFSP-LGMRTVLLTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKHSRRKPVIIYVPSRKQTRLTAIDILTFAAAESNPDCFLHADFDDIKGFVDKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPGQDVDAKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCIAIEDEMDTSPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIVASSAEFEDIPLRHGEEALLRSLSNRLPHKITSG-----KFNDPHVKAQILVQAHLSRIQLSAELQQDAELIVSKAIRLIQACVDVLSSNGWLAPAIAAMELSQMVTQAMWNKESYLKQIPHLTQEVIERCVANNIDSVFDIVELEDSDRDKLLPLSADEMADVARFCNRYPNIEMNYTLVDKDRLASGDVVNVEVKLEREDEVTGPIIAPFFPTKREEGWWVVIGDPKSNTLLSIKRLTLQQKAKFKLDFVAPRVGKYNYTLFFMSDSYLGCDQEYKLSVEIKDVGD 2129
MADAAAR LQYEYKANSNLVLQAD RLIE+R RDE+TGEV+SL GKL GTKMGDRA RTRP +A ++ R+ RDE G ++L++ + G +Y+PKT ETRQTYEVLLSF+QEALGDQPRDIL GA DEVL LKN K+++KK ETE LLG S++EERFALLVNLGKKITDF EE E+IDETYGINVQF++SEEE E+ + +G+EA+++ + A + G G+ K E+ ALHP DIDA+WLQR LSK + DA VSQ K+ EVL VL A D RECEN+LVLLLGYDCFDFIK L ++ MI+Y L ++E E++K+ +M + +L+++L +LE + + ++ ++ S ++ V + +L+LE+L F +GSH+ ANKRCQLP+GSFRKQ KGYEEVHVPALKPK GDNE +I+ LP YV+P FEG+++LNRIQS+L T L SD+N+LLCAPTGAGKTNVALL M+REIGKH+N DG+I AD+FKIIYVAPM+SLVQEMVG+F KRL+ +NI V ELTGD Q+++EQI+ TQIIVCTPEKWDIITRKG E+T+T LVRLIIIDEIHLLHD+RGPVLE++VARTIR +E +QE+VRLVGLSATLPNYQDVA FLRV TGLFYFDNS+RPV+LEQQ+IG+TEKK +KR+Q+MNE+V++K M AG++QVL+FVHSRKET KTARA++DMCLE+DTLG FLKEGSASMEVLR+E+EQVKN++LKDLLPYGFAIHHAGM RVDR+LVEDLFADRHIQVLVST+TLAWGVNLPAHTVIIKGTQIY+P+KGRWVELGALDVLQMLGRAGRPQ+DT+GEGILITNHSELQ+YLSL NQQLP+ESQMI KL DMLNAE++LGT+Q + DAVTWLGYTYL++RM+R PTLYG+ + + DP LE+ RA L+HTAA+ L++S L+KY+RKTG Q TELGRI+SHYYC +ETM T+NQLLKP LSEIELFR+FSLS EF++I VR+EEKLEL KLMERVPIP+KES+EEPSAK+N+LLQAYIS L+ +GFALMSDMV+VTQSASRL+RAIFEIVL GWAQLADK+L+LCKMID+R+WQSMSPLRQF+K+P +I+KKIEKKNF +ER YDLGPNEIGELIR+PKLGK IHK++HQFPKL+L +HIQPITRS L +ELTITPDFQWD+K HG S+ FWI VEDVDSEV+LHHE+FLLK +SQDEH VK FVPIFEPLPPQYF+R+VSDRWIG+ET LPVSFRHL+LPEKN PPTELLDLQPLPVTALRN+ FE +Y++K QFNP+QTQ FN +YN DDN+ IGAP GSGKT EFA+LRLF + E RCVY+ P A+AE+ + +WH+KF LG + VLLTGET TDLKL+A+G I+IST EKWDVLSRRWKQRKNVQN+ LF+ DE+HL+GG GPV+EVVCSRMRYISSQ++KPIRI+A +S+ + +D++ WLGC NATFNFHP+VRP+PLEL++QG+NI+HNASRL+AMA+PV+NA+ ++S KPVI++VP+RKQ+RLTAID+LT+AA+E + F HA+ +DIK F+D++TDKTLKETL QGV Y+HEGL+ +D +VE LFDSGAVQ+ VVS+ LCW VN+ +YLVIIMDTQFY+GK H+Y DY +TDVLQM+G ANRP +D DAKCVL+CQ++KKD FKKFL EPLP+ESHLDH LHDHFNAEIVTKTIENKQDAVDYLTWT +YRRLTQNPNYY +QG+++RHLSDHLSE+VE TLS+LE SKCI++E++MD PLNLGMIAAYYYINYTTIELFS+SLNSKTKIRGL+EI++S+AE+ED+ +RH E+ +LR L+ +LP+K+TS K+NDPHVK +L+QAHL R+QL AELQ D E+++SKAIRLIQACVDVLSSNGWL+PA+AAMEL+QMVTQAMW+K+SYLKQ+PH T E+I+RC +++VFDI+ELED DR KLL LS +MADVARFCNRYPNIE++Y ++DKD++ SG V+V V+LEREDEV GP+IAPFFP KREEGWWVVIGDPK+N+LLSIKRLTLQQKA+ KLDFVAP G +NYTL+FMSD+YLGCDQEYK S+ DVGD
Sbjct: 1 MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVVSLVGKLSGTKMGDRAQRTRP--------GKAEERKVKRQKRDEAQYDFARMKGATLLSEGVDEMVGIIYRPKTQETRQTYEVLLSFLQEALGDQPRDILCGAADEVLTVLKNDRLKEKEKKKETEMLLG-SIAEERFALLVNLGKKITDFG----NEENKISMNEENIDETYGINVQFEESEEEDDEDMYGEVREDMDDEEGEEAKEDSAIHAENLG--GVEEMKKEK--------ALHPLDIDAYWLQRRLSKIYDDAMVSQAKAAEVLNVLRDAGDDRECENQLVLLLGYDCFDFIKQLKKHRQMILYCTLLAKSQSESERQKIKDKMSEDPSLTRILRLLETGKGDDDGEDEESTSRSSSRKDQSDEMDTGSGAQVAGSRHLLDLEDLVFTQGSHYMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFGDNEKLQSIDQLPKYVQPVFEGFKTLNRIQSRLYKTALESDENLLLCAPTGAGKTNVALLCMMREIGKHINTDGTINADDFKIIYVAPMRSLVQEMVGNFGKRLSSYNITVSELTGDHQLTREQIAGTQIIVCTPEKWDIITRKGGEKTFTSLVRLIIIDEIHLLHDERGPVLEALVARTIRMIESTQEDVRLVGLSATLPNYQDVAAFLRVKSDTGLFYFDNSFRPVALEQQYIGVTEKKALKRYQVMNEIVYEKTMEHAGRNQVLIFVHSRKETGKTARAIRDMCLEKDTLGQFLKEGSASMEVLRTEAEQVKNHELKDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTRGEGILITNHSELQYYLSLLNQQLPIESQMISKLSDMLNAEIVLGTVQNVRDAVTWLGYTYLYIRMLRQPTLYGVSHDHFKQDPLLEQHRADLIHTAALYLDRSGLVKYDRKTGQFQVTELGRISSHYYCTHETMQTYNQLLKPMLSEIELFRVFSLSSEFRNITVREEEKLELQKLMERVPIPIKESIEEPSAKVNVLLQAYISQLKLEGFALMSDMVYVTQSASRLMRAIFEIVLHRGWAQLADKSLALCKMIDKRMWQSMSPLRQFRKMPEEIVKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELSTHIQPITRSMLKVELTITPDFQWDEKLHGASEAFWILVEDVDSEVILHHEYFLLKAKYSQDEHLVKFFVPIFEPLPPQYFLRIVSDRWIGAETQLPVSFRHLILPEKNFPPTELLDLQPLPVTALRNDKFESLYNDKFPQFNPIQTQVFNSVYNGDDNIFIGAPTGSGKTTIAEFAILRLFDKNPEGRCVYLVPKDALAELTFADWHNKFGQILGKKVVLLTGETGTDLKLLAKGQIVISTAEKWDVLSRRWKQRKNVQNVNLFIVDELHLIGGEDGPVIEVVCSRMRYISSQIEKPIRIIALSASLMDYRDVSQWLGCNANATFNFHPSVRPVPLELHVQGINITHNASRLIAMAKPVYNAVVRYSPHKPVIVFVPTRKQSRLTAIDLLTYAASEGQSNKFFHAEEEDIKPFLDRMTDKTLKETLSQGVAYMHEGLTASDLRLVEQLFDSGAVQIAVVSKDLCWTVNIYSYLVIIMDTQFYNGKVHSYEDYPITDVLQMVGRANRPLEDDDAKCVLMCQSTKKDFFKKFLSEPLPVESHLDHRLHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRLTQNPNYYNLQGVTHRHLSDHLSELVENTLSDLEQSKCISVEEDMDCVPLNLGMIAAYYYINYTTIELFSLSLNSKTKIRGLLEIISSAAEYEDLSVRHREDNILRQLATKLPNKLTSSSGSQPKYNDPHVKTNLLIQAHLCRLQLGAELQGDTEIVLSKAIRLIQACVDVLSSNGWLSPAVAAMELAQMVTQAMWSKDSYLKQLPHFTTEIIKRCTDKGVETVFDIMELEDEDRSKLLQLSDSQMADVARFCNRYPNIELSYEVLDKDKIHSGSSVHVAVQLEREDEVNGPVIAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKARVKLDFVAPSPGHHNYTLYFMSDAYLGCDQEYKFSI---DVGD 2128
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. nr
Match: gi|1339083340|ref|XP_023702714.1| (putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Cryptotermes secundus] >gi|1330923694|gb|PNF38528.1| putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Cryptotermes secundus] >gi|1330923695|gb|PNF38529.1| putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Cryptotermes secundus]) HSP 1 Score: 3110.09 bits (8062), Expect = 0.000e+0 Identity = 1476/2141 (68.94%), Postives = 1788/2141 (83.51%), Query Frame = 0
Query: 1 MADAAARSLQYEYKANSNLVLQADTRLIEKRGRDESTGEVISLTGKLLGTKMGDRAVRTRPTELKAQEEARAAKKAKARRGRDEQAVGLR--AGQSVLAQDAAGLEGALYQPKTAETRQTYEVLLSFIQEALGDQPRDILQGAVDEVLLTLKNSGTKDRDKKGETESLLGASLSEERFALLVNLGKKITDFALEGREEEGGTKAAGEDIDETYGINVQFQDSEEEASEEEEEAADGDEAEDEEMVQAPDTGRSGLRVDKDEEGQSRQTRSALHPSDIDAHWLQRELSKYFPDANVSQQKSKEVLEVLERAMDKRECENKLVLLLGYDCFDFIKILVTNKNMIVYSIRLKLCRNEEEQEKLMAEMRQSKTLSKMLDMLEGNQ-----------VTEAAKERKAAKPSLEIEEIPVQPALQILNLEELAFAKGSHFRANKRCQLPEGSFRKQEKGYEEVHVPALKPKALGDNEVNVAIESLPVYVRPAFEGYQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKSQVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQLLKPNLSEIELFRIFSLSGEFKHIGVRDEEKLELHKLMERVPIPVKESVEEPSAKINILLQAYISHLQFDGFALMSDMVFVTQSASRLLRAIFEIVLVHGWAQLADKTLSLCKMIDRRLWQSMSPLRQFKKIPMDIIKKIEKKNFSFERFYDLGPNEIGELIRMPKLGKAIHKFIHQFPKLDLISHIQPITRSTLSIELTITPDFQWDDKAHGHSQGFWIFVEDVDSEVVLHHEFFLLKKSFSQDEHSVKMFVPIFEPLPPQYFIRVVSDRWIGSETVLPVSFRHLVLPEKNLPPTELLDLQPLPVTALRNEAFEGIYSNKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLRLFASDSEVRCVYMAPLQAVAEIAYNEWHSKFSP-LGMRTVLLTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKHSRRKPVIIYVPSRKQTRLTAIDILTFAAAESNPDCFLHADFDDIKGFVDKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPGQDVDAKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCIAIEDEMDTSPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIVASSAEFEDIPLRHGEEALLRSLSNRLPHKIT-SGKFNDPHVKAQILVQAHLSRIQLSAELQQDAELIVSKAIRLIQACVDVLSSNGWLAPAIAAMELSQMVTQAMWNKESYLKQIPHLTQEVIERCVANNIDSVFDIVELEDSDRDKLLPLSADEMADVARFCNRYPNIEMNYTLVDKDRLASGDVVNVEVKLEREDEVTGPIIAPFFPTKREEGWWVVIGDPKSNTLLSIKRLTLQQKAKFKLDFVAPRVGKYNYTLFFMSDSYLGCDQEYKLSVEIKD 2126
MADAAAR LQYEYKANSNLVLQAD RLIE+R RDE+TGEV+SL GKL GT+MGDR RTRP +AA++ R+ RDE G ++L++ + G LY+PKT ETRQTYEVLLSFIQEALGDQPRDIL GA DEVL LKN K+R+KK ETESLLG +L+EERFALLVNLGKKITDF G EE+ T E+IDETYGINVQF++SEEE E+ +E E+E D + EE + ++ LHP DIDA+WLQR LSK++ DA SQ K+ EVL VL A D R+CEN+LVLLLGYDCFDFIK+L +++MI+Y L ++E E++K+ +M + +L+++L L+ + + A++ ++ A L+ V + Q+L+LE+L FA+GSHF ANKRCQLP+GSFRKQ KGYEEVHVPALK K +E AIE LP YV+PAFE +++LNRIQS+L L+SD+N+LLCAPTGAGKTNVALL MLREIGKH+N DG+I DEFKIIYVAPM+SLVQEMVG+FSKRL +N+ V ELTGD Q+++EQI TQIIVCTPEKWDIITRKG E+TYTQLVRLII+DE+HLLHD+RGPVLE++VARTIR++E +QE+VRLVGLSATLPNYQDV+TFLR+ ++TGLFYFDNS+RPV+LEQQ+IG+TEKK MKR Q+MNE+V++KVM AG +QVLVFVHSRKET KTARA++DMCLE+DTLG FL+EGSASMEVLR+E+EQVKN++LKDLLPYGFAIHHAGM RVDR+LVEDLFADRHIQVLVST+TLAWGVNLPAHTVIIKGTQ+Y+P+KGRWVELGALDVLQMLGRAGRPQ+DTKGEGILITNHSELQ+YLSL NQQLP+ESQ I KLPDMLNAE++LGTIQ + DAVTWLGYTYL+VR++R PTLYGI + ++ DP LE++RA L+HTAA+ L+ S L+KY+RKTG Q TELGRI+SHYYC ++TM T+NQLLKP LSEIELFR+FSLSGEF++I VR+EEKLEL KLMERVPIP+KES+EEPSAK+N+LLQAYIS L+ +GFALMSDMV+VTQSA+RL+RAIFEIVL GWAQLADK LSLCKM+DRR+WQSMSPLRQF+K+P +I+KKIEKKNF +ER YDL PNEIGELIR+PKLGK IHK++HQFPKL+L +HIQPITRSTL IELT+TPDFQWD+K HG S+ FWI VEDVDSEV+LHHE+FLLK ++ DEH +K FVP+FEPLPPQYF+R+VSDRW+G+ET LPVSFRHL+LPEKNLPPTELLDLQPLPVTALRN FE +Y +K QFNP+QTQ FN +YNSDDN+ IGAP GSGKT EFA+LRL + + + RCVY+ P A+AE+ + +W KF LG + VLLTGET TDLKL+A+G +I+ T EKWD+LSRRWKQRKNVQNIQLF+ DE+ L+GG GPV+EVVCSRMRY+SSQ+++ IRIV+ +S+A+A+D+A WLGC NATFNFHP+VRPIPLEL++QG N++HNASRL+AM +PV+N+I KHS KPVI++VP+RKQ RLTAID+LTF AAE P+ F HA+ +DIK F+D++TDKTLKETL QGV Y+HEGL+ +D +VE LFDSGAVQV VV+R+LCWGV++ A+LV+IMDTQFY+GK HAY DY +TDVLQM+G ANRP +D DAKCVL+CQ+SKKD FKKFL E LP+ESHLDH LHDHFNAEIVTKTIENKQDAVDYLTWT +YRRLTQNPNYY +QG+++RHLSDHLSE+VE TL++LE SKCI+IE+E+D PLNLGMIAAYYYINYTTIELFS+SLN+KTKIRGL+EI++S+AE+ED+P+RH E+ LLRSL+ RLP+K+ S K+NDPH+K +L+QAHLSR+QL AELQ D E I+ KAIRLIQACVDVLSS+GWL+PA+AAMEL+QMVTQAMW+K+SYLKQ+PH T ++I+RC +++VFDI+ELED R KLL L+ +MADVARFCNRYPNI+M Y + D+D + SG V V V+LEREDEVTGP+IAPF+P KREEGWWVVIGDPK N+LLSIKRL LQQK+K KLDFVAP G + YTL+FMSD+YLGCDQEYK S+ ++D
Sbjct: 1 MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVMSLVGKLDGTRMGDRHQRTRPV--------KAAERKAKRQKRDEAQYDFTRMKGATLLSEGVDEMVGILYRPKTQETRQTYEVLLSFIQEALGDQPRDILCGAADEVLAVLKNDRLKEREKKRETESLLG-NLAEERFALLVNLGKKITDF---GTEEKVTT--TDENIDETYGINVQFEESEEEDDEDIYGEVREEEDEEEGEEAKLDGAIHAENLGGAEEMKKEKS---LHPLDIDAYWLQRRLSKFYDDAMASQAKAAEVLSVLRDAGDDRDCENQLVLLLGYDCFDFIKLLKKHRHMILYCTLLASSQSESERQKIRDKMNEDSSLARILRQLDTGKGEDDGGGEDGGIARASRRKEQADEGLDGARGQVPGSRQLLDLEDLTFAQGSHFMANKRCQLPDGSFRKQRKGYEEVHVPALKSKPFAPDESLYAIEKLPKYVQPAFEDFKTLNRIQSRLYKAALDSDENILLCAPTGAGKTNVALLCMLREIGKHINADGTINTDEFKIIYVAPMRSLVQEMVGNFSKRLNSYNLTVSELTGDHQLTREQIQATQIIVCTPEKWDIITRKGGEKTYTQLVRLIILDEVHLLHDERGPVLEALVARTIRNIETTQEDVRLVGLSATLPNYQDVSTFLRIKQETGLFYFDNSFRPVALEQQYIGVTEKKAMKRFQVMNEIVYEKVMEHAGHNQVLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAEQVKNHELKDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQCISKLPDMLNAEIVLGTIQNVRDAVTWLGYTYLYVRLLRAPTLYGISHDRLKEDPLLEQYRADLIHTAALHLDHSGLIKYDRKTGHFQVTELGRISSHYYCTHDTMATYNQLLKPTLSEIELFRVFSLSGEFRNITVREEEKLELQKLMERVPIPIKESIEEPSAKVNVLLQAYISQLKLEGFALMSDMVYVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKMPEEIVKKIEKKNFPWERLYDLNPNEIGELIRLPKLGKTIHKYVHQFPKLELSTHIQPITRSTLRIELTVTPDFQWDEKLHGASEAFWILVEDVDSEVILHHEYFLLKSKYATDEHLIKFFVPVFEPLPPQYFLRIVSDRWLGAETQLPVSFRHLILPEKNLPPTELLDLQPLPVTALRNPEFESLYIDKFPQFNPIQTQVFNAVYNSDDNIFIGAPTGSGKTTIAEFAVLRLLSQNPDGRCVYLVPRDALAEVVFADWQQKFGGVLGKKVVLLTGETGTDLKLLAKGQVIVCTAEKWDILSRRWKQRKNVQNIQLFIVDELQLIGGEDGPVLEVVCSRMRYMSSQIERQIRIVSLSASLADARDVAQWLGCNANATFNFHPSVRPIPLELHVQGFNVTHNASRLIAMTKPVYNSILKHSPHKPVIVFVPTRKQARLTAIDLLTFTAAEGQPNRFFHAEEEDIKPFLDRMTDKTLKETLSQGVAYIHEGLTPSDHRLVEQLFDSGAVQVAVVTRNLCWGVSIAAHLVVIMDTQFYNGKIHAYEDYPITDVLQMVGRANRPLEDDDAKCVLMCQSSKKDFFKKFLNESLPVESHLDHRLHDHFNAEIVTKTIENKQDAVDYLTWTFIYRRLTQNPNYYNLQGVTHRHLSDHLSELVENTLNDLEQSKCISIEEEIDCMPLNLGMIAAYYYINYTTIELFSLSLNNKTKIRGLLEIISSAAEYEDVPVRHHEDNLLRSLAARLPNKLAGSPKYNDPHIKTNLLLQAHLSRLQLGAELQGDTEAILGKAIRLIQACVDVLSSSGWLSPAVAAMELAQMVTQAMWSKDSYLKQLPHFTPDIIKRCTEKGVETVFDIMELEDDVRSKLLQLTDAQMADVARFCNRYPNIDMKYQVEDEDSIRSGSSVIVTVQLEREDEVTGPVIAPFYPQKREEGWWVVIGDPKMNSLLSIKRLNLQQKSKVKLDFVAPSPGHHTYTLYFMSDAYLGCDQEYKFSIRVED 2124
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. nr
Match: gi|817210664|ref|XP_012281431.1| (putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Orussus abietinus]) HSP 1 Score: 3106.62 bits (8053), Expect = 0.000e+0 Identity = 1481/2144 (69.08%), Postives = 1779/2144 (82.98%), Query Frame = 0
Query: 1 MADAAARSLQYEYKANSNLVLQADTRLIEKRGRDESTGEVISLTGKLLGTKMGDRAVRTRPTELKAQEEARAAKKAKARRGRDEQAVGLR--AGQSVLAQDAAGLEGALYQPKTAETRQTYEVLLSFIQEALGDQPRDILQGAVDEVLLTLKNSGTKDRDKKGETESLLGASLSEERFALLVNLGKKITDFALEGREEEGGTKAAGEDIDETYGINVQFQDSEE--------EASEEEEEAADGDEAEDEEMVQAPDTGRSGLRVDKDEEGQSRQTRSALHPSDIDAHWLQRELSKYFPDANVSQQKSKEVLEVLERAMDKRECENKLVLLLGYDCFDFIKILVTNKNMIVYSIRLKLCRNEEEQEKLMAEMRQSKTLSKMLDMLE---GNQVTEAAKERKAAKPSLEIEEIPVQPALQ------ILNLEELAFAKGSHFRANKRCQLPEGSFRKQEKGYEEVHVPALKPKALGDNEVNVAIESLPVYVRPAFEGYQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKSQVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQLLKPNLSEIELFRIFSLSGEFKHIGVRDEEKLELHKLMERVPIPVKESVEEPSAKINILLQAYISHLQFDGFALMSDMVFVTQSASRLLRAIFEIVLVHGWAQLADKTLSLCKMIDRRLWQSMSPLRQFKKIPMDIIKKIEKKNFSFERFYDLGPNEIGELIRMPKLGKAIHKFIHQFPKLDLISHIQPITRSTLSIELTITPDFQWDDKAHGHSQGFWIFVEDVDSEVVLHHEFFLLKKSFSQDEHSVKMFVPIFEPLPPQYFIRVVSDRWIGSETVLPVSFRHLVLPEKNLPPTELLDLQPLPVTALRNEAFEGIYSNKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLRLFASDSEVRCVYMAPLQAVAEIAYNEWHSKFSP-LGMRTVLLTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKHSRRKPVIIYVPSRKQTRLTAIDILTFAAAESNPDCFLHADFDDIKGFVDKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPGQDVDAKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCIAIEDEMDTSPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIVASSAEFEDIPLRHGEEALLRSLSNRLPHKITSGKFNDPHVKAQILVQAHLSRIQLSAELQQDAELIVSKAIRLIQACVDVLSSNGWLAPAIAAMELSQMVTQAMWNKESYLKQIPHLTQEVIERCVANNIDSVFDIVELEDSDRDKLLPLSADEMADVARFCNRYPNIEMNYTLVDKDRLASGDVVNVEVKLEREDEVTGPIIAPFFPTKREEGWWVVIGDPKSNTLLSIKRLTLQQKAKFKLDFVAPRVGKYNYTLFFMSDSYLGCDQEYKLSVEI 2124
MADAAAR LQYEYKANSNLVLQAD RLIE+R RDE+TGEV+SL GKL GT+MGDRA RT+P KA+E +KAK R+ RDE G ++L++ + G +Y+PKT ETRQTYEVLLSFIQEALGDQPRDIL GA DEVL LKN K+++KK ETE LLG +L+EERFALLVNLGKKITDF G +E+ T E+IDETYGINVQF++S E E + +E+ +G+EA D+ + A + G + + + LHP DIDA+WLQR LS+ + DA VSQ ++ EVL VL A D R+CEN+LVLLLGYDCFDFIK L ++MI Y L +++ E++K+ +M +L+K+L L+ G+ + E +A + E E P Q I++LE+L FA+GSHF ANKRCQLP+GSFRKQ KGYEEVHVPALKPK +NE I+ LP YV+PAFEG+++LNRIQS+L L SD+N+LLCAPTGAGKTNVALL M+REIGKH+N DG+I ADEFKIIYVAPM+SLVQEMVG+F KRLA +N+ V ELTGD Q+++EQI+ TQ+IVCTPEKWDIITRKG E+T+T LVRL+IIDEIHLLHD+RGPVLE++VARTIR++E +QE+VRLVGLSATLPNYQDVA FLR+ TGL+YFDNS+RPV+LEQQ+IG+TEKK +KR Q+MNE+V++K M AG++QVLVFVHSRKET KTARA++DMCLE+DTLG FL+EGSASMEVLR+E+EQVKN +LKDLLPYGFAIHHAGM RVDR+LVEDLFADRHIQVLVST+TLAWGVNLPAHTVIIKGTQ+Y+P+KGRWVELGALDVLQMLGRAGRPQ+DTKGEGILITNHSELQ+YLSL NQQLP+ESQ+I K+ DMLNAE++LGTIQ + DAVTWLGYTYL++RM+R P LYGI ++ ++ DP LE RA L+H+AA+ L++S L+KY+RK+G Q TELGRIASHYYC +ETM T+NQLLK LSEIELFR+FSLSGEFK+I VR+EEKLEL KLMERVPIP+KES+EEPSAK+N+LLQAYIS L+ +GFALMSDMVFVTQSASRL+RAIFEIVL GWAQLADK LSLCKMIDRR+WQSMSPLRQF+K+P +I+KKIEKKNF +ER YDLGPNEIGELIR+PKLGK IHK+IHQFPKL+L +HIQPITRSTL +ELTITPDFQWD+K HG S+ FWI VEDVDSEV+LHHE+FLLK ++ DEH +K FVP+FEPLPPQYF+RVVSDRWIG+ET LPVSFRHL+LPEKNLPPTELLDLQPLP+TALRN FE +YS+K QFNP+QTQ FN +YNSDDNV IGAP GSGKT EF +LRL + E RCVYM +A+AE+ Y +W KF LG + VLLTGET TDLKL+A+G III+T +KWDVLSRRWKQRKNVQNIQLF+ DE+ L+GG GPV+EV CSR RYISSQLDKP RI+A +S+A+AKD A WLG +ATFNFHP+VRPIPLEL++QG+NI+HNASRL AMA+PV+NAI +H+ KPVII+VP+R+Q R+TAID+LTFAAAE P F HA+ DIK F+D++ DKTLKETL QGV YLHEGLS DR +VE LF+SGA+QV V +R LCWG+++ ++LV++MDTQ Y+GK HAY DY +TDVLQM+ ANRP +D DAKCVLLCQ+SKKD FKKFL EPLP+ESHLDH LHDHFNAEIVTKTIENKQDAVDYLTWT +YRRLTQNPNYYG+QG+++RHLSDHLSE+VE TL +LE +KC+A+EDEMDT PLNLGMIAAYYYINY TIELFS+SLN+KTKIRGL+EI++++AE+E IP+R EE LLRSL+ RLPH + DPHVKAQ+L+QAHLSRIQL ELQ+D EL++ KA+RLIQACVDVLSS+GWLAPA+AAMEL+QMVTQAMW+K+SYLKQ+PH T E I+RC +++VFD++ELED DR++LL L+ +MADVA+FCNRYPNIEM+Y + DKD+L SG VNV V+LEREDE+TGP++APFFP KREEGWWVVIGDPKSN+LLSIKRLTLQQKAK KLDFVAP G+++YTL+FMSD+YLGCDQEYK ++ +
Sbjct: 1 MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVMSLVGKLDGTRMGDRAQRTKPG--KAEE-----RKAK-RQKRDEAQYDFARMKGATLLSEGVDEMVGIVYRPKTQETRQTYEVLLSFIQEALGDQPRDILCGAADEVLAVLKNDRLKEKEKKKETEMLLG-TLAEERFALLVNLGKKITDF---GSDEKSTTNE--ENIDETYGINVQFEESSEEDDEDVYGEVRDNDEDGDEGEEANDDRAIHAENLGGA----------EEMKKEKPLHPLDIDAYWLQRRLSRIYDDAMVSQARAAEVLAVLRDAGDDRDCENQLVLLLGYDCFDFIKQLKKYRHMIAYCTMLASSQSDSERQKIRNKMNDDPSLAKILRQLDTGKGDDDADETMEARAQRKRREENEDTGGPGGQVQGTRNIIDLEDLIFAQGSHFMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFAENEKLHPIDQLPKYVQPAFEGFKTLNRIQSRLHYAALESDENLLLCAPTGAGKTNVALLCMMREIGKHINDDGTINADEFKIIYVAPMRSLVQEMVGNFGKRLATYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGEKTFTSLVRLVIIDEIHLLHDERGPVLEALVARTIRNIETTQEDVRLVGLSATLPNYQDVAAFLRIKTDTGLYYFDNSFRPVALEQQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAEQVKNQELKDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQLISKMSDMLNAEIVLGTIQNIRDAVTWLGYTYLYIRMLRCPNLYGISYDKLKEDPLLELHRADLIHSAAIALDRSGLIKYDRKSGNFQATELGRIASHYYCTHETMSTYNQLLKRTLSEIELFRVFSLSGEFKNINVREEEKLELQKLMERVPIPIKESIEEPSAKVNVLLQAYISQLKLEGFALMSDMVFVTQSASRLMRAIFEIVLFRGWAQLADKCLSLCKMIDRRMWQSMSPLRQFRKMPEEIVKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYIHQFPKLELSTHIQPITRSTLRVELTITPDFQWDEKVHGASEAFWILVEDVDSEVILHHEYFLLKAKYAADEHLIKFFVPVFEPLPPQYFLRVVSDRWIGAETQLPVSFRHLILPEKNLPPTELLDLQPLPITALRNSKFENLYSDKFPQFNPIQTQVFNAVYNSDDNVFIGAPTGSGKTTIAEFGVLRLLMQNPEGRCVYMVSKEALAELVYQDWFFKFGQLLGRKVVLLTGETGTDLKLLAKGQIIITTADKWDVLSRRWKQRKNVQNIQLFIVDELQLIGGEEGPVLEVACSRARYISSQLDKPTRIIALSASLADAKDTAQWLGAPASATFNFHPSVRPIPLELHVQGVNITHNASRLAAMAKPVYNAILRHAPHKPVIIFVPTRRQARMTAIDLLTFAAAEGQPSKFFHAEESDIKPFLDRMADKTLKETLSQGVAYLHEGLSADDRHLVEQLFESGAIQVAVATRDLCWGLSISSHLVVVMDTQCYNGKTHAYEDYPITDVLQMVARANRPLEDDDAKCVLLCQSSKKDFFKKFLNEPLPVESHLDHRLHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRLTQNPNYYGLQGVTHRHLSDHLSELVESTLGDLEQAKCVAVEDEMDTVPLNLGMIAAYYYINYATIELFSLSLNNKTKIRGLLEIISAAAEYETIPVRQREENLLRSLAARLPHAPQVTRMADPHVKAQLLLQAHLSRIQLGPELQKDTELVLGKAVRLIQACVDVLSSSGWLAPAVAAMELAQMVTQAMWSKDSYLKQLPHFTSETIKRCTDKGVETVFDVMELEDDDRNRLLQLTDAQMADVAKFCNRYPNIEMSYEVQDKDKLHSGGTVNVIVQLEREDEITGPVVAPFFPQKREEGWWVVIGDPKSNSLLSIKRLTLQQKAKVKLDFVAPAPGQHSYTLYFMSDAYLGCDQEYKFTIGV 2120
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. nr
Match: gi|1069800748|ref|XP_018324896.1| (PREDICTED: putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Agrilus planipennis]) HSP 1 Score: 3106.24 bits (8052), Expect = 0.000e+0 Identity = 1485/2157 (68.85%), Postives = 1794/2157 (83.17%), Query Frame = 0
Query: 1 MADAAARSLQYEYKANSNLVLQADTRLIEKRGRDESTGEVISLTGKLLGTKMGDRAVRTRPTELKAQEEARAAKKAKARRGRDEQAVGLR--AGQSVLAQDAAGLEGALYQPKTAETRQTYEVLLSFIQEALGDQPRDILQGAVDEVLLTLKNSGTKDRDKKGETESLLGASLSEERFALLVNLGKKITDFALEGREEEGGTKAAGEDIDETYGINVQFQDSEEEASEEEEEAADGDEAEDEEMVQAPDTGRSGLRVDKDEEGQSRQTRS--ALHPSDIDAHWLQRELSKYFPDANVSQQKSKEVLEVLERAMDKRECENKLVLLLGYDCFDFIKILVTNKNMIVYSIRLKLCRNEEEQEKLMAEMRQSKTLSKMLDMLE---GNQVTEAAKERKAAKPSLEIEE------IPVQPALQILNLEELAFAKGSHFRANKRCQLPEGSFRKQEKGYEEVHVPALKPKALGDNEVNVAIESLPVYVRPAFEGYQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKSQVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQLLKPNLSEIELFRIFSLSGEFKHIGVRDEEKLELHKLMERVPIPVKESVEEPSAKINILLQAYISHLQFDGFALMSDMVFVTQSASRLLRAIFEIVLVHGWAQLADKTLSLCKMIDRRLWQSMSPLRQFKKIPMDIIKKIEKKNFSFERFYDLGPNEIGELIRMPKLGKAIHKFIHQFPKLDLISHIQPITRSTLSIELTITPDFQWDDKAHGHSQGFWIFVEDVDSEVVLHHEFFLLKKSFSQDEHSVKMFVPIFEPLPPQYFIRVVSDRWIGSETVLPVSFRHLVLPEKNLPPTELLDLQPLPVTALRNEAFEGIYSNKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLRLFASDSEVRCVYMAPLQAVAEIAYNEWHSKFSP-LGMRTVLLTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKHSRRKPVIIYVPSRKQTRLTAIDILTFAAAESNPDCFLHADFDDIKGFVDKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPGQDVDAKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCIAIEDEMDTSPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIVASSAEFEDIPLRHGEEALLRSLSNRLPHKITSG-----KFNDPHVKAQILVQAHLSRIQLSAELQQDAELIVSKAIRLIQACVDVLSSNGWLAPAIAAMELSQMVTQAMWNKESYLKQIPHLTQEVIERCVANNIDSVFDIVELEDSDRDKLLPLSADEMADVARFCNRYPNIEMNYTLVDKDRLASGDVVNVEVKLEREDEVTGPIIAPFFPTKREEGWWVVIGDPKSNTLLSIKRLTLQQKAKFKLDFVAPRVGKYNYTLFFMSDSYLGCDQEYKLSVEIKDVGDVKRRPENSD 2138
MADAAAR LQYEYKANSNLVLQAD RLIE+R RDE+TGEV+SL GKLLGTKMGDRA +T+P +KA+E +KAK R+ RDE G ++L++ + G +Y+PKT ETRQTYEVLLSF+QEALGDQPRDIL GA DE+L LKN KD++KK ETE+LLG S++EERFALLVNL KKITDF G +E A E+IDETYGINVQF++SEEE E+ E +E + R + + + G +++ +LHP DIDA+WLQR+LSK + DA VSQ K+ EVL VL A D RECEN+LVLLLGYDCFDFIK+L N+ MI Y L ++E E++KL M L+++L +L+ G+ + ++++ +E + + QI++ E+L F++GSHF ANKRCQLP+GSFRKQ KGYEEVHVPALKPK +NE +AI+ LP YV+P F+G+++LNRIQS+L L+SD+N+LLCAPTGAGKTNVALL M+REIGKH+N DG+I AD+FKIIYVAPM+SLVQEMVG+F KRLA +NI V ELTGD Q+S+EQI+ TQIIVCTPEKWDIITRKG E+T+T LVRLIIIDEIHLLHD+RGPVLE+++ARTIR +E +QE+VRLVGLSATLPNY+DVA LRV +GLFYFDNS+RPV+LEQQ+IG+TEKK +KR Q+MNE+V++K M AG++QVLVFVHSRKET KTARA++DMCLE+DTLG FL+EGSASMEVLR+E+EQVKN +LKDLLPYGFAIHHAGM RVDR+LVEDLFADRHIQVLVST+TLAWGVNLPAHTVIIKGTQIY+P+KGRW ELGALDVLQMLGRAGRPQ+DTKGEGILITNHSELQ+YLSL NQQLP+ESQM+ KLPDMLNAE++LGT+Q + DAVTWLGYTYL++RM+R P LYGI + ++ DP LE+ RA L+HTAA+ L++S L+KY+RK+G Q TELGRIASHYYC +ETM T+NQLLKP LSEIELFR+FSLSGEFK+I VR+EEKLEL KLMERVPIP+KES+EEPSAK+N+LLQAYIS L+ +GFALMSDMVF+TQSASRL+RAIFEIVL GWAQLADK+L+LCKMIDRR+WQSMSPLRQF+K+P +I+KKIEKKNF +ER YDLGPNEIGELIR+PKLGK IHK++HQFPKL+L +HIQPITRSTL +ELT+TPDFQWD+K HGHS+ FWI VEDVDSEV+LHHE+FLLK ++ DEH VK FVP+FEPLPPQYF+R+VSDRWIGSET LPVSFRHL+LPEKNLPPTELLDLQPLP+TALRN +E +Y K QFNP+QTQ FN +YNSDDNV IGAP GSGKT EF++LRLF + + RCVYM P A+AE+ + +WH+KF L + VLLTGET TDLKL+A+G III+T EKWD+LSRRWKQRKNVQNI LF+ADE+HL+GG GPV+EVVCSRMRYISSQ++K IRIVA +S+A+ KD++ WLGC N TFNFHP+VRP+PLEL++QG N++HNASRL+AM++PV+NAI +HS KPVI++VP+RKQ RL AIDILT+ AAE P+ F HA+ +DIK F+D+++DKTLKETL QGV Y+HEGLS +D +VE LFDSGAVQ+ V++R LCW VN+ A+LVI MDTQFY+GK HAY DY +TDV+QM+G ANRP +D DAKCVL+CQ+SKKD FKKFL + LP+ESHLDH LHDHFNAEIVTKTIENKQDAVDYLTWT +YRRLTQNPNYY +QG+++RHLSDHLSE+VE TLS+LE SKCI+IEDEMD PLNLGMIAAYYYINYTTIELFS+SLN++TKIRGL+EI++S+AE+ED+P+RH E+ LLRSL+ RLP+K+TS K+NDPHVK +L+QAHL RIQL AELQ D E+++ KAIRLIQACVDVLSSNGWL+PA+AAMEL+QMVTQ MW+K+SYLKQ+PH T ++I+RC I++VFDI+ELED DR KLL L+ +MADVARFCNRYPNIE+ Y ++DKDR+ SG V+V V+LEREDEV GP+IAPFFP KREEGWWVVIG+PKSN+LLSIKRLTLQQKA+ KLDFVAP G + YTL+FMSD+YLGCDQEYK S+ DVGD + SD
Sbjct: 1 MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVMSLVGKLLGTKMGDRAQKTKP--VKAEE-----RKAK-RQKRDEAQYDFTRMKGATLLSEGIDEMVGIIYKPKTQETRQTYEVLLSFLQEALGDQPRDILCGAADEILSVLKNDRLKDKEKKKETEALLG-SITEERFALLVNLCKKITDF---GSDETKTIVAGEENIDETYGINVQFEESEEEDDEDMY-----GEVREELDDDEGEEAREDIAIHAENLGGVEESKKEKSLHPLDIDAYWLQRQLSKIYDDAMVSQAKAAEVLNVLRDASDDRECENQLVLLLGYDCFDFIKVLKKNRQMIYYCTVLAKSQSESERQKLKDRMSDDPALARILRLLDTGKGDDEDDDESSMRSSRKKDHNDENEAGSGATLPGSRQIIDFEDLVFSQGSHFMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFSENEKLIAIDQLPKYVQPVFDGFKTLNRIQSRLCKCALDSDENLLLCAPTGAGKTNVALLCMMREIGKHINADGTINADDFKIIYVAPMRSLVQEMVGNFGKRLASYNITVSELTGDHQLSREQIAATQIIVCTPEKWDIITRKGGEKTFTSLVRLIIIDEIHLLHDERGPVLEALIARTIRMIESTQEDVRLVGLSATLPNYKDVALLLRVKPDSGLFYFDNSFRPVALEQQYIGVTEKKALKRFQIMNEIVYEKTMEHAGRNQVLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAEQVKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQMVTKLPDMLNAEIVLGTVQNVRDAVTWLGYTYLYIRMLRQPNLYGISHDHMKQDPLLEQHRADLIHTAALHLDRSGLVKYDRKSGNFQVTELGRIASHYYCTHETMSTYNQLLKPMLSEIELFRVFSLSGEFKNIAVREEEKLELQKLMERVPIPIKESIEEPSAKVNVLLQAYISQLKLEGFALMSDMVFITQSASRLMRAIFEIVLHRGWAQLADKSLALCKMIDRRMWQSMSPLRQFRKMPEEIVKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELSTHIQPITRSTLKVELTVTPDFQWDEKLHGHSEAFWILVEDVDSEVILHHEYFLLKAKYATDEHYVKFFVPVFEPLPPQYFLRIVSDRWIGSETQLPVSFRHLILPEKNLPPTELLDLQPLPITALRNAKYESLYQEKFPQFNPIQTQVFNAVYNSDDNVFIGAPTGSGKTTIAEFSILRLFQQNPDGRCVYMVPKDALAELIFADWHNKFGQLLAKKVVLLTGETGTDLKLLAKGQIIITTAEKWDILSRRWKQRKNVQNIHLFIADELHLIGGEDGPVIEVVCSRMRYISSQIEKQIRIVALSASLADYKDVSQWLGCNANCTFNFHPSVRPVPLELHVQGFNVTHNASRLIAMSKPVYNAILRHSPHKPVIVFVPTRKQARLMAIDILTYCAAEGQPNRFFHAEEEDIKPFLDRMSDKTLKETLSQGVAYMHEGLSASDHRLVEQLFDSGAVQIAVITRDLCWAVNIFAHLVIAMDTQFYNGKVHAYEDYPITDVIQMVGRANRPLEDDDAKCVLMCQSSKKDFFKKFLNDSLPVESHLDHRLHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRLTQNPNYYNLQGVTHRHLSDHLSELVENTLSDLEQSKCISIEDEMDCMPLNLGMIAAYYYINYTTIELFSLSLNNRTKIRGLLEIISSAAEYEDLPVRHREDNLLRSLAQRLPNKLTSATGGPPKYNDPHVKTNLLLQAHLCRIQLGAELQGDTEVVLGKAIRLIQACVDVLSSNGWLSPAVAAMELAQMVTQGMWSKDSYLKQLPHFTPDIIKRCTDKGIETVFDIMELEDEDRTKLLQLTDSQMADVARFCNRYPNIELTYEIMDKDRIHSGSSVHVAVQLEREDEVNGPVIAPFFPQKREEGWWVVIGEPKSNSLLSIKRLTLQQKARIKLDFVAPSPGHHTYTLYFMSDAYLGCDQEYKFSI---DVGDFESSESESD 2137
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. nr
Match: gi|1036987999|ref|XP_017053374.1| (PREDICTED: putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Drosophila ficusphila]) HSP 1 Score: 3106.24 bits (8052), Expect = 0.000e+0 Identity = 1461/2141 (68.24%), Postives = 1776/2141 (82.95%), Query Frame = 0
Query: 1 MADAAARSLQYEYKANSNLVLQADTRLIEKRGRDESTGEVISLTGKLLGTKMGDRAVRTRPTELKAQEEARAAKKAKARRGRDEQAVGLR--AGQSVLAQDAAGLEGALYQPKTAETRQTYEVLLSFIQEALGDQPRDILQGAVDEVLLTLKNSGTKDRDKKGETESLLGASLSEERFALLVNLGKKITDFALEGREEEGGTKAAGEDIDETYGINVQFQDSEEEASEEEEEAADGDEAEDEEMVQAPDTGRSGLRVDKDEEGQSRQTRSALHPSDIDAHWLQRELSKYFPDANVSQQKSKEVLEVLERAMDKRECENKLVLLLGYDCFDFIKILVTNKNMIVYSIRLKLCRNEEEQEKLMAEMRQSKTLSKMLDMLEGNQVTEA----AKERKAAKPSLE----IEEIPVQPALQILNLEELAFAKGSHFRANKRCQLPEGSFRKQEKGYEEVHVPALKPKALGDNEVNVAIESLPVYVRPAFEGYQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKSQVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQLLKPNLSEIELFRIFSLSGEFKHIGVRDEEKLELHKLMERVPIPVKESVEEPSAKINILLQAYISHLQFDGFALMSDMVFVTQSASRLLRAIFEIVLVHGWAQLADKTLSLCKMIDRRLWQSMSPLRQFKKIPMDIIKKIEKKNFSFERFYDLGPNEIGELIRMPKLGKAIHKFIHQFPKLDLISHIQPITRSTLSIELTITPDFQWDDKAHGHSQGFWIFVEDVDSEVVLHHEFFLLKKSFSQDEHSVKMFVPIFEPLPPQYFIRVVSDRWIGSETVLPVSFRHLVLPEKNLPPTELLDLQPLPVTALRNEAFEGIYSNKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLRLFASDSEVRCVYMAPLQAVAEIAYNEWHSKFSPLGMRTVLLTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKHSRRKPVIIYVPSRKQTRLTAIDILTFAAAESNPDCFLHADFDDIKGFVDKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPGQDVDAKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCIAIEDEMDTSPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIVASSAEFEDIPLRHGEEALLRSLSNRLPHKI-----TSGKFNDPHVKAQILVQAHLSRIQLSAELQQDAELIVSKAIRLIQACVDVLSSNGWLAPAIAAMELSQMVTQAMWNKESYLKQIPHLTQEVIERCVANNIDSVFDIVELEDSDRDKLLPLSADEMADVARFCNRYPNIEMNYTLVDKDRLASGDVVNVEVKLEREDEVTGPIIAPFFPTKREEGWWVVIGDPKSNTLLSIKRLTLQQKAKFKLDFVAPRVGKYNYTLFFMSDSYLGCDQEYKLSVEIKD 2126
MADAAAR LQYEYKANSNLVLQAD RLIE+ RDE+TGEV SL GKL GT+MGDR RT+P + E R K+ K RDE G ++L++ + G +Y+PKT ETRQTYEVLLSFIQEALGDQPRDIL GA DE+L LKN KDR++K + +SLLGA +++ERFALLVNLGKKITDF + E IDETYGINVQF++SEEE+ + D+A+DE D + +E + + +LHP DIDA+WLQR LSK++ DA VSQ K+ +VL++L+ A D R+CEN+LVLLLGYDCFDFIK L N+ M++Y L + + E++++ +MR + TL+K+L L+ + E A+ K K E V Q+L LEE+AF +GSHF ANKRCQLP+GS+RKQ KGYEEVHVPALKP NE ++ LP YV+P FEG+++LNRIQS+L L+SD+N+LLCAPTGAGKTNVALL M+REIGKH+N DG+I A +FKIIYVAPMKSLVQEMVG+F +RLA +N+ V ELTGD Q+++EQI+ TQ+IVCTPEKWDIITRKG ERT+ LVRL+IIDEIHLLHD+RGPVLE++VARTIR++E +QEEVRLVGLSATLPNYQDVATFLRV GLFYFDNSYRPVSLEQQ+IG+TEKK +KR Q+MNE+V++K M AG++QVLVFVHSRKET KTARA++DMCLE+DTLG+FL+EGSASMEVLR+E+EQVKN +LK+LLPYGFAIHHAGM RVDR+LVEDLFADRHIQVLVST+TLAWGVNLPAHTVIIKGTQ+Y+P+KGRWVEL ALDVLQMLGRAGRPQ+DTKGEGILITNHSELQFYLSL NQQLP+ESQ I KLPDMLNAE++LGT+Q ++DAV WLGYTYL++RM+RNPTLYG+ +A++ DP LE+ RA L+HTAA LE+S L+KY+RKTG Q T+LGRIASHYY +ETMLT+NQLLK LSEIELFR+FSLS EF+HI VR+EEKLEL KLMERVPIP+KES+EE SAK+N+LLQAYIS L+ +GFALMSDMVF+TQSA+RL+RAIFEIVL GWAQLADKTL+LCKMIDRR+WQSM+PLRQFKK+P +I KK+EKK+F + R YDL P+E+GELIR+PKLGK IHKF+HQFPKL+L +HIQPITR TL +ELTITPDFQWD+K HG S+GFW+ +EDVDSE++LHHEFFLLK+ +SQDEH +K FVP+FEPLPPQYF+R+VSDRWIG+ET LPVSFRHL+LPEKN+PPTELLDLQPLP++ALR FE YS + QFNP+QTQ FN +YNSD+NV +GAP GSGK EFA++RLF + S+ RCVY+ +A+A++ + +WHSKF L ++ V LTGET TDLKLIA+G ++I+T +KWDVLSRRWKQRKNVQ + LF+ DE+ LVGG GPV+E+VCSRMRYISSQ++K IRIVA +S+ +A+D+A WLGC NATFNFHP+VRPIPLEL+IQG N++HNA+R+ M++PV+NAI K+S KPVI++V SRKQ RLTAID+LT+AA++ P+ F HA+ +DIK F++++TDKTLKETL QGV YLHEGLS +D +VE LFDSGAVQV VVSR LCWG+++ A+LVIIMDTQFY+GK+H+Y DY +TDVLQMIG ANRP +D DAKCVL+CQ+SKKD FKKF+ EPLPIESHLDH +HDHFNAE+VTKTIENKQDAVDYLTWT +YRRLTQNPNYY +QG+++RHLSDHLSE+VE TLS+LE SKCI++ED+MDT PLNLGMIAAYYYINYTTIELFS+SLNSKTK+RGL+EI++S+AE+ED+ +RH EE +LR+LS RLP+K+ T+ KFNDPH+K +L+QAHLSR+QL ELQ D E I+SKAIRLIQACVDVLSSNGWL+PA+AAMEL+QMVTQAMW+K+SYLKQ+PH + E+++RC I++VFDI+ELED DR +LL LS +MADVARFCNRYPNIE+NY +VDKDR+ SG VNV V+LEREDEVTGP+IAPFFP KREEGWWVVIGDPK+N+LLSIKRLTLQQKAK KLDFVAP GK++YTL++MSDSYLGCDQEYK S+E+ D
Sbjct: 1 MADAAARQLQYEYKANSNLVLQADVRLIERPRRDEATGEVCSLVGKLDGTRMGDRYQRTKP----EKTEERKVKRQK----RDEAQYDFERMKGATLLSEGIDEMVGIVYRPKTQETRQTYEVLLSFIQEALGDQPRDILCGAADEILAVLKNDRLKDRERKRDVDSLLGA-VTDERFALLVNLGKKITDFGSDAVNALTAAPNNEEQIDETYGINVQFEESEEESDNDMYGEIRDDDAQDEGEEARIDHTLHAENLANEEAANNVKKERSLHPLDIDAYWLQRCLSKFYKDAMVSQSKAADVLKILKDAADDRDCENQLVLLLGYDCFDFIKQLKLNRQMVLYCTMLASAQTDSERQRIREKMRGNSTLAKILRQLDTGKSEEQDEGEARGSKRGKGDAEDGGAATAGQVAGVRQLLELEEMAFTQGSHFMANKRCQLPDGSYRKQRKGYEEVHVPALKPVPFDANEELQPVDKLPKYVQPVFEGFKTLNRIQSRLYKAALDSDENMLLCAPTGAGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSLVQEMVGNFGRRLACYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGERTFVSLVRLVIIDEIHLLHDERGPVLEALVARTIRNIETTQEEVRLVGLSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSLEQQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVLVFVHSRKETGKTARAVRDMCLEQDTLGSFLREGSASMEVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQFYLSLLNQQLPIESQFISKLPDMLNAEIVLGTVQHLQDAVNWLGYTYLYIRMLRNPTLYGVSHDAIKADPLLEQHRADLLHTAACCLERSGLVKYDRKTGHFQVTDLGRIASHYYLTHETMLTYNQLLKQTLSEIELFRVFSLSSEFRHISVREEEKLELQKLMERVPIPIKESIEEHSAKVNVLLQAYISQLKLEGFALMSDMVFITQSAARLMRAIFEIVLNRGWAQLADKTLTLCKMIDRRMWQSMTPLRQFKKMPDEIAKKLEKKHFPWGRLYDLEPHELGELIRVPKLGKTIHKFVHQFPKLELSTHIQPITRGTLRVELTITPDFQWDEKVHGQSEGFWVLIEDVDSELILHHEFFLLKQKYSQDEHQLKFFVPVFEPLPPQYFLRIVSDRWIGAETQLPVSFRHLILPEKNMPPTELLDLQPLPISALRQPKFEAFYSQRFPQFNPIQTQVFNAVYNSDENVFVGAPTGSGKMTIAEFAIMRLFTTQSDARCVYLVSQEALADLVFADWHSKFGSLDIKVVKLTGETGTDLKLIAKGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVGGEDGPVLEIVCSRMRYISSQIEKQIRIVALSASLTDARDVAQWLGCNPNATFNFHPSVRPIPLELHIQGFNVTHNATRIATMSKPVYNAILKYSAHKPVIVFVSSRKQARLTAIDVLTYAASDLQPNRFFHAEEEDIKPFLERMTDKTLKETLAQGVAYLHEGLSSSDHRLVEQLFDSGAVQVAVVSRDLCWGMSISAHLVIIMDTQFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAKCVLMCQSSKKDFFKKFINEPLPIESHLDHRMHDHFNAEVVTKTIENKQDAVDYLTWTFLYRRLTQNPNYYNLQGVTHRHLSDHLSELVENTLSDLEQSKCISVEDDMDTLPLNLGMIAAYYYINYTTIELFSLSLNSKTKVRGLLEIISSAAEYEDVVVRHHEEQVLRTLSQRLPNKLTGPNETAPKFNDPHIKTNLLLQAHLSRLQLGPELQGDTEQILSKAIRLIQACVDVLSSNGWLSPAVAAMELAQMVTQAMWSKDSYLKQLPHFSPEIVKRCTEKKIETVFDIMELEDEDRTRLLQLSDLQMADVARFCNRYPNIELNYEVVDKDRINSGSTVNVVVQLEREDEVTGPVIAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKVKLDFVAPSPGKHDYTLYYMSDSYLGCDQEYKFSIEVGD 2132
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. nr
Match: gi|1189103045|ref|XP_020815904.1| (putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Drosophila serrata]) HSP 1 Score: 3104.69 bits (8048), Expect = 0.000e+0 Identity = 1459/2141 (68.15%), Postives = 1778/2141 (83.05%), Query Frame = 0
Query: 1 MADAAARSLQYEYKANSNLVLQADTRLIEKRGRDESTGEVISLTGKLLGTKMGDRAVRTRPTELKAQEEARAAKKAKARRGRDEQAVGLR--AGQSVLAQDAAGLEGALYQPKTAETRQTYEVLLSFIQEALGDQPRDILQGAVDEVLLTLKNSGTKDRDKKGETESLLGASLSEERFALLVNLGKKITDFALEGREEEGGTKAAGEDIDETYGINVQFQDSEEEASEEEEEAADGDEAEDEEMVQAPDTGRSGLRVDKDEEGQSRQTRSALHPSDIDAHWLQRELSKYFPDANVSQQKSKEVLEVLERAMDKRECENKLVLLLGYDCFDFIKILVTNKNMIVYSIRLKLCRNEEEQEKLMAEMRQSKTLSKMLDMLEG--NQVTEAAKERKAAKPSLEIEEIPVQPAL------QILNLEELAFAKGSHFRANKRCQLPEGSFRKQEKGYEEVHVPALKPKALGDNEVNVAIESLPVYVRPAFEGYQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKSQVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQLLKPNLSEIELFRIFSLSGEFKHIGVRDEEKLELHKLMERVPIPVKESVEEPSAKINILLQAYISHLQFDGFALMSDMVFVTQSASRLLRAIFEIVLVHGWAQLADKTLSLCKMIDRRLWQSMSPLRQFKKIPMDIIKKIEKKNFSFERFYDLGPNEIGELIRMPKLGKAIHKFIHQFPKLDLISHIQPITRSTLSIELTITPDFQWDDKAHGHSQGFWIFVEDVDSEVVLHHEFFLLKKSFSQDEHSVKMFVPIFEPLPPQYFIRVVSDRWIGSETVLPVSFRHLVLPEKNLPPTELLDLQPLPVTALRNEAFEGIYSNKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLRLFASDSEVRCVYMAPLQAVAEIAYNEWHSKFSPLGMRTVLLTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKHSRRKPVIIYVPSRKQTRLTAIDILTFAAAESNPDCFLHADFDDIKGFVDKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPGQDVDAKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCIAIEDEMDTSPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIVASSAEFEDIPLRHGEEALLRSLSNRLPHKI-----TSGKFNDPHVKAQILVQAHLSRIQLSAELQQDAELIVSKAIRLIQACVDVLSSNGWLAPAIAAMELSQMVTQAMWNKESYLKQIPHLTQEVIERCVANNIDSVFDIVELEDSDRDKLLPLSADEMADVARFCNRYPNIEMNYTLVDKDRLASGDVVNVEVKLEREDEVTGPIIAPFFPTKREEGWWVVIGDPKSNTLLSIKRLTLQQKAKFKLDFVAPRVGKYNYTLFFMSDSYLGCDQEYKLSVEIKD 2126
MADAAAR LQYEYKANSNLVLQAD RLIE+ RDE+TGEV SL GKL GT+MGDR RT+P + E R K+ K RDE G ++L++ + G +Y+PKT ETRQTYEVLLSFIQEALGDQPRDIL GA DE+L LKN KDR++K + +SLLG S+++ERFALLVNLGKKITDF + E IDETYGINVQF++SEEE+ + DE +DE D + +E + + +LHP DIDA+WLQR LSK++ DA VSQ K+ +VL++L+ A D+R+CEN+LVLLLGYDCFDFIK L N+ MI+Y L + + E++++ +MR + L+K+L L+ ++ E + R + + + E+ A Q+L L+ELAF +GSHF ANKRCQLP+GS+RKQ KGYEEVHVPALKP NE ++ LP YV+P FEG+++LNRIQS+L L+SD+N+LLCAPTGAGKTNVALL M+REIGKH+N DG+I A +FKIIYVAPMKSLVQEMVG+F +RLA +N+ V ELTGD Q+++EQI+ TQ+IVCTPEKWDIITRKG ERT+ LVRL+IIDEIHLLHD+RGPVLE++VARTIR++E +QEEVRLVGLSATLPNYQDVATFLRV GLFYFDNSYRPVSLEQQ+IG+TEKK +KR Q+MNE+V++K M AG++QVLVFVHSRKET KTARA++DMCLE+DTLG+FL+EGSASMEVLR+E+EQVKN +LK+LLPYGFAIHHAGM RVDR+LVEDLFADRHIQVLVST+TLAWGVNLPAHTVIIKGTQ+Y+P+KGRWVEL ALDVLQMLGRAGRPQ+DTKGEGILITNHSELQFYLSL NQQLP+ESQ I KLPDMLNAE++LGT+Q ++DAV WLGYTYL++RM+RNPTLYG+ +A++ DP LE+ RA L+HTAA LE+S L+KYERKTG Q T+LGRIASHYY +ETMLT+NQLLK LSEIELFR+FSLS EF+HI VR+EEKLEL KLMERVPIP+KES+EE SAK+N+LLQAYIS L+ +GFALMSDMVF+TQSA+RL+RAIFEIVL GWAQLADKTL+LCKMIDRR+WQSM+PLRQFKK+P +I KK+EKK+F + R YDL P+E+GELIR+PKLGK IHKF+HQFPKL+L +HIQPITR TL +ELTITPDFQWD+K HG S+GFW+ +EDVDSE++LHHEFFLLK+ +SQDEH +K FVP+FEPLPPQYF+R+VSDRWIG+ET LPVSFRHL+LPEKN+PPTELLDLQPLP++ALR FE YS + QFNP+QTQ FN +YNSD+NV +GAP GSGK EFA++RLF + S+ RCVY+ +A+A++ + +WH KF+ L ++ V LTGET TDLKLIA+G ++I+T +KWDVLSRRWKQRKNVQ + LF+ DE+ LVGG GPV+E+VCSRMRYISSQ++K IRIVA +S+ +A+D+A WLGC NATFNFHP+VRPIPLEL+IQG N++HNA+R+ M++PV+NAI K+S KPVI++V SRKQ RLTAIDILT+AA++ P+ F HA+ +DIK F++++TDKTLKETL QGV YLHEGLS +D +VE LFDSGAVQV VVSR LCWG+++ A+LVIIMDTQFY+GK+H+Y DY +TDVLQMIG ANRP +D DAKCVL+CQ+SKKD FKKF+ EPLPIESHLDH +HDHFNAE+VTKTIENKQDAVDYLTWT +YRRLTQNPNYY +QG+++RHLSDHLSE+VE TLS+LE SKCI++ED+MDT PLNLGMIAAYYYINYTTIELFS+SLNSKTK+RGL+EI++S+AE+ED+ +RH EE +LR+LS RLP+K+ T+ KFNDPH+K +L+QAHLSR+QL ELQ D E I+SKAIRLIQACVDVLSSNGWL+PA+AAMEL+QMVTQAMW+K+SYL+Q+PH + E+++RC I++VFDI+ELED DR +LL LS +MADVARFCNRYPNIE+NY +VDKDR+ SG VNV V+LEREDEVTGP+IAPFFP KREEGWWVVIGDPK+N+LLSIKRLTLQQKAK KLDFVAP GK++YTL++MSDSYLGCDQEYK S+E+ D
Sbjct: 1 MADAAARQLQYEYKANSNLVLQADVRLIERPRRDEATGEVCSLVGKLDGTRMGDRYQRTKP----EKTEERKVKRQK----RDEAQYDFERMKGATLLSEGIDEMVGIVYRPKTQETRQTYEVLLSFIQEALGDQPRDILCGAADEILAVLKNDRLKDRERKRDVDSLLG-SVTDERFALLVNLGKKITDFGSDAVNALTAAPNNEEQIDETYGINVQFEESEEESDNDMYGEIRDDEGQDEGEEARIDHTLHAENLANEEAANNVKKDRSLHPLDIDAYWLQRCLSKFYKDAMVSQSKAADVLKILKDAADERDCENQLVLLLGYDCFDFIKQLKVNRQMILYCTMLASAQTDSERQRIREKMRGNSALAKILRQLDTGKSEEQEEGETRGSKRGKGDSEDGGAAAAGQVAGVRQLLELDELAFTQGSHFMANKRCQLPDGSYRKQRKGYEEVHVPALKPVPFDSNEELQPVDKLPKYVQPVFEGFKTLNRIQSRLYKAALDSDENMLLCAPTGAGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSLVQEMVGNFGRRLACYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGERTFVSLVRLVIIDEIHLLHDERGPVLEALVARTIRNIETTQEEVRLVGLSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSLEQQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVLVFVHSRKETGKTARAVRDMCLEQDTLGSFLREGSASMEVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQFYLSLLNQQLPIESQFISKLPDMLNAEIVLGTVQHLQDAVNWLGYTYLYIRMLRNPTLYGVSHDAIKADPLLEQHRADLLHTAACCLERSGLVKYERKTGHFQVTDLGRIASHYYLTHETMLTYNQLLKQTLSEIELFRVFSLSSEFRHISVREEEKLELQKLMERVPIPIKESIEEHSAKVNVLLQAYISQLKLEGFALMSDMVFITQSAARLMRAIFEIVLTRGWAQLADKTLTLCKMIDRRMWQSMTPLRQFKKMPDEIAKKLEKKHFPWARLYDLEPHELGELIRVPKLGKTIHKFVHQFPKLELSTHIQPITRGTLRVELTITPDFQWDEKVHGQSEGFWVLIEDVDSELILHHEFFLLKQKYSQDEHQLKFFVPVFEPLPPQYFLRIVSDRWIGAETQLPVSFRHLILPEKNMPPTELLDLQPLPISALRQPKFEAFYSQQFPQFNPIQTQVFNAVYNSDENVFVGAPTGSGKMTIAEFAIMRLFTTQSDARCVYLVSQEALADLVFADWHGKFAALDIKVVKLTGETGTDLKLIAKGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVGGEDGPVLEIVCSRMRYISSQIEKQIRIVALSASLTDARDVAQWLGCNPNATFNFHPSVRPIPLELHIQGFNVTHNATRIATMSKPVYNAILKYSVHKPVIVFVSSRKQARLTAIDILTYAASDLQPNRFFHAEEEDIKPFLERMTDKTLKETLAQGVAYLHEGLSSSDHRLVEQLFDSGAVQVAVVSRDLCWGMSISAHLVIIMDTQFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAKCVLMCQSSKKDFFKKFINEPLPIESHLDHRMHDHFNAEVVTKTIENKQDAVDYLTWTFLYRRLTQNPNYYNLQGVTHRHLSDHLSELVENTLSDLEQSKCISVEDDMDTLPLNLGMIAAYYYINYTTIELFSLSLNSKTKVRGLLEIISSAAEYEDVVVRHHEEQVLRTLSQRLPNKLTGPNETAPKFNDPHIKTNLLLQAHLSRLQLGPELQGDTEQILSKAIRLIQACVDVLSSNGWLSPAVAAMELAQMVTQAMWSKDSYLRQLPHFSAEIVKRCTEKKIETVFDIMELEDEDRSRLLQLSDLQMADVARFCNRYPNIELNYEVVDKDRINSGSTVNVVVQLEREDEVTGPVIAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKVKLDFVAPSPGKHDYTLYYMSDSYLGCDQEYKFSIEVGD 2132
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. nr
Match: gi|572259943|ref|XP_006608302.1| (PREDICTED: putative U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Apis dorsata]) HSP 1 Score: 3104.69 bits (8048), Expect = 0.000e+0 Identity = 1477/2146 (68.83%), Postives = 1777/2146 (82.81%), Query Frame = 0
Query: 1 MADAAARSLQYEYKANSNLVLQADTRLIEKRGRDESTGEVISLTGKLLGTKMGDRAVRTRPTELKAQEEARAAKKAKARRGRDEQAVGLR--AGQSVLAQDAAGLEGALYQPKTAETRQTYEVLLSFIQEALGDQPRDILQGAVDEVLLTLKNSGTKDRDKKGETESLLGASLSEERFALLVNLGKKITDFALEGREEEGGTKAAGEDIDETYGINVQFQDSEE--------EASEEEEEAADGDEAEDEEMVQAPDTGRSGLRVDKDEEGQSRQTRSALHPSDIDAHWLQRELSKYFPDANVSQQKSKEVLEVLERAMDKRECENKLVLLLGYDCFDFIKILVTNKNMIVYSIRLKLCRNEEEQEKLMAEMRQSKTLSKMLDMLE---GNQVTEAAKERKAAKPSLEIEEIPVQPALQI------LNLEELAFAKGSHFRANKRCQLPEGSFRKQEKGYEEVHVPALKPKALGDNEVNVAIESLPVYVRPAFEGYQSLNRIQSKLSDTCLNSDQNVLLCAPTGAGKTNVALLAMLREIGKHVNPDGSIRADEFKIIYVAPMKSLVQEMVGSFSKRLAVFNIKVGELTGDSQMSKEQISETQIIVCTPEKWDIITRKGIERTYTQLVRLIIIDEIHLLHDDRGPVLESIVARTIRHMEMSQEEVRLVGLSATLPNYQDVATFLRVNKKTGLFYFDNSYRPVSLEQQFIGITEKKPMKRHQLMNEVVFKKVMARAGKSQVLVFVHSRKETAKTARALKDMCLERDTLGAFLKEGSASMEVLRSESEQVKNNDLKDLLPYGFAIHHAGMNRVDRSLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYSPDKGRWVELGALDVLQMLGRAGRPQFDTKGEGILITNHSELQFYLSLQNQQLPVESQMIRKLPDMLNAELILGTIQTMEDAVTWLGYTYLFVRMMRNPTLYGIPFEAVENDPKLEKFRASLVHTAAMLLEKSNLLKYERKTGGMQPTELGRIASHYYCGYETMLTFNQLLKPNLSEIELFRIFSLSGEFKHIGVRDEEKLELHKLMERVPIPVKESVEEPSAKINILLQAYISHLQFDGFALMSDMVFVTQSASRLLRAIFEIVLVHGWAQLADKTLSLCKMIDRRLWQSMSPLRQFKKIPMDIIKKIEKKNFSFERFYDLGPNEIGELIRMPKLGKAIHKFIHQFPKLDLISHIQPITRSTLSIELTITPDFQWDDKAHGHSQGFWIFVEDVDSEVVLHHEFFLLKKSFSQDEHSVKMFVPIFEPLPPQYFIRVVSDRWIGSETVLPVSFRHLVLPEKNLPPTELLDLQPLPVTALRNEAFEGIYSNKITQFNPVQTQTFNVLYNSDDNVLIGAPPGSGKTLCLEFAMLRLFASDSEVRCVYMAPLQAVAEIAYNEWHSKFS-PLGMRTVLLTGETSTDLKLIARGNIIISTPEKWDVLSRRWKQRKNVQNIQLFMADEIHLVGGTIGPVMEVVCSRMRYISSQLDKPIRIVACGSSMANAKDLANWLGCGTNATFNFHPNVRPIPLELYIQGLNISHNASRLLAMARPVFNAITKHSRRKPVIIYVPSRKQTRLTAIDILTFAAAESNPDCFLHADFDDIKGFVDKITDKTLKETLCQGVGYLHEGLSKADRSVVESLFDSGAVQVLVVSRSLCWGVNLQAYLVIIMDTQFYSGKHHAYHDYALTDVLQMIGLANRPGQDVDAKCVLLCQTSKKDMFKKFLYEPLPIESHLDHCLHDHFNAEIVTKTIENKQDAVDYLTWTLMYRRLTQNPNYYGMQGISYRHLSDHLSEIVEGTLSELEHSKCIAIEDEMDTSPLNLGMIAAYYYINYTTIELFSMSLNSKTKIRGLIEIVASSAEFEDIPLRHGEEALLRSLSNRLPHKITSGKFNDPHVKAQILVQAHLSRIQLSAELQQDAELIVSKAIRLIQACVDVLSSNGWLAPAIAAMELSQMVTQAMWNKESYLKQIPHLTQEVIERCVANNIDSVFDIVELEDSDRDKLLPLSADEMADVARFCNRYPNIEMNYTLVDKDRLASGDVVNVEVKLEREDEVTGPIIAPFFPTKREEGWWVVIGDPKSNTLLSIKRLTLQQKAKFKLDFVAPRVGKYNYTLFFMSDSYLGCDQEYKLSVEIKD 2126
MADAAAR LQYEYKANSNLVLQAD RLIE+R RDE+TGEV+SL GKL GT+MGDRA RT+P +A ++ R+ RDE G ++L++ + G +Y+PKT ETRQTYEVLLSFIQEALGDQPRDIL GA DEVL LKN K+++KK ETE LLG L+EERFALLVNLGKKITDF G +E+ T E+IDETYGINVQF++S E E E ++E +G+EA D+ + A + G + + + LHP DIDA+WLQR LS+ + DA VSQ ++ EVL VL+ A D R+CEN+LVLLLGYDCFDFIK L ++ I Y L ++E E++K+ +M L+K+L L+ G+ + E +A + E E P Q+ ++LE+L FA+GSHF ANKRCQLP+GSFRKQ KGYEEVHVPALKPK +NE I+ LP YV+PAFEG+++LNRIQS L L+SD+N+LLCAPTGAGKTNVALL M+REIGKH+N D +I ADEFKIIYVAPM+SLVQEMVG+FSKRL+ +N+ V ELTGD Q+++EQI+ TQ+IVCTPEKWDIITRKG E+T+T LVRLIIIDEIHLLHD+RGPVLE++VARTIR++E +QE+VRL+GLSATLPNYQDVA FLR+ ++GLFYFDNS+RPV+LEQQ+IG+TEKK +KR Q+MNE+V++K M AG++QVLVFVHSRKET KTARA++DMCLE+DTLG FL+EGSASMEVLR+E+EQVKN +LKDLLPYGFAIHHAGM RVDR+LVEDLFADRHIQVLVST+TLAWGVNLPAHTVIIKGTQ+Y+P+KGRWVELGALDVLQMLGRAGRPQ+DTKGEGILITNHSELQ+YLSL NQQLP+ESQ+I K+ DMLNAE++LGTIQ + DAVTWLGYTYL++RM+R P LYGI + ++ DP LE RA L+H+AA+ L++S L+KY+RK+G Q TELGRIASHYYC +ETM +NQLLK LSEIELFR+FSLS EFKHI VR+EEKLEL KLMERVPIPVKES+EEPSAK+N+LLQAYIS L+ +GFALMSDMVFVTQSASRL+RAIFEIVL GWAQLADK LSLCKMIDRR+WQSMSPLRQF+K+P +I+KKIEKKNF +ER YDLGPNEIGELIR+PKLGK IHK+IHQF KL+L +HIQPITRSTL +ELTITPDFQWD+K HG S+ FWI VEDVDSEV+LHHE+FLLK ++ DEH +K FVP+FEPLPPQYF+RVVSDRWIG+ET LPVSFRHL+LPEKNLPPTELLDLQPLP+TALRN FE IY++K QFNP+QTQ FN +YNSDDNV +GAP GSGKT EFA+LRLF + E RCVYM +A+AE+ Y +W +KF+ LG + VLLTGET TDLKL+A+G III+T +KWDVLSRRWKQRKNVQNIQLF+ DE+ L+GG GPV+EV CSR RYISSQLDKP RI+A +S+A+AKD A WLG ATFNFHP+VRP+PLEL++QG+NI+HNASRL AMA+PV+NAI +H+ KPVI++VP+R+Q RLTAID+LTF AAE P F HA+ DIK F+D++TDKTLKETL QGV YLHEGLS DR +VE LFDSGA+Q+ V +R LCWG+++ ++LV++MDTQ Y+GK HAY DY +TDVLQM+ ANRP +D DAKCVLLCQ+SKKD FKKFL EPLP+ESHLDH LHDHFNAEIVTKTIENKQDAVDYLTWT +YRRLTQNPNYYG+QG+++RHLSDHLSE+VE TLS+LE +KC+A+EDEMDT PLNLGMIAAYYYINY TIELFS+SLN+KTKIRGL+EI++++AE+E +P+R EE LLRSL+ RLPH + + DPHVKAQ+L+QAHLSRIQL ELQ+D EL++SKAIRLIQACVDVLSS+GWLAPA+AAMEL+QMVTQAMW+K+SYLKQ+PH T E I+RC +++VFD++ELED DR++LL LS +MADVA+FCNRYPNIEM+Y + DKD+L SG VNV V+LEREDEVTGP++APFFP KREEGWWVVIGDPK+N+LLSIKRLTLQQKAK KLDFVAP G+++YTL+FMSD+YLGCDQEYK ++ + +
Sbjct: 1 MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVMSLVGKLDGTRMGDRAQRTKP--------GKAEERKVKRQKRDEAQYDFTRMKGATLLSEGVDEMVGIVYRPKTQETRQTYEVLLSFIQEALGDQPRDILCGAADEVLAVLKNDRLKEKEKKKETELLLG-PLAEERFALLVNLGKKITDF---GSDEKTTTNE--ENIDETYGINVQFEESSEEDDEDVYGEVRENDDEGDEGEEANDDRAIHAENLGGA----------EEMKKEKPLHPLDIDAYWLQRRLSRIYDDAMVSQARAAEVLAVLKDAGDDRDCENQLVLLLGYDCFDFIKQLKKYRHTIAYCTMLASSQSESERQKIRNKMNDDPVLAKILRQLDTGKGDDDADETMEARAQRKRREENEDTGGPGGQVQGTRNLIDLEDLIFAQGSHFMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFAENEKLYPIDQLPKYVQPAFEGFKTLNRIQSHLYQAALDSDENLLLCAPTGAGKTNVALLCMMREIGKHINADSTINADEFKIIYVAPMRSLVQEMVGTFSKRLSTYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGEKTFTSLVRLIIIDEIHLLHDERGPVLEALVARTIRNIETTQEDVRLIGLSATLPNYQDVAAFLRIKPESGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAEQVKNQELKDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQLISKMSDMLNAEIVLGTIQNIRDAVTWLGYTYLYIRMLRCPNLYGISQDKIKEDPLLELHRADLIHSAAVALDRSGLIKYDRKSGNFQATELGRIASHYYCTHETMAIYNQLLKRTLSEIELFRVFSLSSEFKHINVREEEKLELQKLMERVPIPVKESIEEPSAKVNVLLQAYISQLKLEGFALMSDMVFVTQSASRLMRAIFEIVLFRGWAQLADKCLSLCKMIDRRMWQSMSPLRQFRKMPEEIVKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYIHQFTKLELSTHIQPITRSTLRVELTITPDFQWDEKVHGASEAFWILVEDVDSEVILHHEYFLLKAKYATDEHLIKFFVPVFEPLPPQYFLRVVSDRWIGAETQLPVSFRHLILPEKNLPPTELLDLQPLPITALRNSKFESIYADKFPQFNPIQTQVFNAIYNSDDNVFVGAPTGSGKTTIAEFAVLRLFTQNPEGRCVYMVSKEALAELVYMDWSAKFNQQLGRKVVLLTGETGTDLKLLAKGQIIITTADKWDVLSRRWKQRKNVQNIQLFIVDELQLIGGEEGPVLEVACSRARYISSQLDKPTRIIALSASLADAKDAAQWLGAPAAATFNFHPSVRPVPLELHVQGINITHNASRLAAMAKPVYNAILRHASHKPVIVFVPTRRQARLTAIDLLTFTAAEGQPSRFFHAEEADIKPFLDRMTDKTLKETLSQGVAYLHEGLSVDDRHLVEQLFDSGAIQIAVATRDLCWGLSISSHLVVVMDTQCYNGKTHAYEDYPITDVLQMVARANRPLEDDDAKCVLLCQSSKKDFFKKFLNEPLPVESHLDHRLHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRLTQNPNYYGLQGVTHRHLSDHLSELVESTLSDLEQAKCVAVEDEMDTLPLNLGMIAAYYYINYATIELFSLSLNNKTKIRGLLEIISAAAEYETVPVRQREENLLRSLATRLPHAPQASRMADPHVKAQLLLQAHLSRIQLGPELQKDTELVLSKAIRLIQACVDVLSSSGWLAPAVAAMELAQMVTQAMWSKDSYLKQLPHFTAETIKRCTDKGVETVFDVMELEDDDRNRLLQLSETQMADVAKFCNRYPNIEMSYEVQDKDKLRSGGTVNVIVQLEREDEVTGPVVAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKVKLDFVAPAPGQHSYTLYFMSDAYLGCDQEYKFTINVDE 2122 The following BLAST results are available for this feature:
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 8
BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of u5 small nuclear ribonucleoprotein 200 kda helicase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold100_size373717:242577..248999+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold100_size373717-processed-gene-2.9 ID=snap_masked-scaffold100_size373717-processed-gene-2.9|Name=u5 small nuclear ribonucleoprotein 200 kda helicase|organism=Tigriopus kingsejongensis|type=gene|length=6423bp|location=Sequence derived from alignment at scaffold100_size373717:242577..248999+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'u5 small nuclear ribonucleoprotein 200 kda helicase' has the following synonyms
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