polyprotein, snap_masked-scaffold1032_size68796-processed-gene-0.9 (gene) Tigriopus kingsejongensis

Overview
Namepolyprotein
Unique Namesnap_masked-scaffold1032_size68796-processed-gene-0.9
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of polyprotein vs. L. salmonis genes
Match: EMLSAG00000003770 (supercontig:LSalAtl2s:LSalAtl2s2036:9528:10163:-1 gene:EMLSAG00000003770 transcript:EMLSAT00000003770 description:"augustus_masked-LSalAtl2s2036-processed-gene-0.0")

HSP 1 Score: 113.62 bits (283), Expect = 1.880e-30
Identity = 66/208 (31.73%), Postives = 103/208 (49.52%), Query Frame = 0 
Query:  128 DIGNTRLQRLRERLVSFAFDLEWNAGKTHLIADALSRAPV-----EPPDDIVDVGV---NMVAAPAIPSFVPAF-GKEPYLSWVRDFHRNHQVRDLRY---------VWDSVSEVDG----MLVVDGRRIIVPIQARRDLLEVLHVPHLGAEMTMKNAEELLFWPGMREDIYKLVAQCEKCQKNRPSLPKEPFLTTAAAAPWSTSTSS 313
            DI N RLQR RE+L  + F+LEW  GK+H I+ ALSRAPV     E  ++  D  V    +   P++   + A      Y   ++ F    +++ +R          +WD +S  D     + +    RII+P+  +  +L++L + H G   T K A++L FWP +  DI  ++  C+ CQK  PS P EP + + A    S   S+
Sbjct:    2 DIPNKRLQRFREKLTDYIFELEWVPGKSHEISYALSRAPVFDTLEESNEEFEDSTVLCNKICTDPSVQLLIDAVVNNSEYQMILQSFRSGTEIKTIRISHPAKQLSSIWDQLSLFDDYEYTLRIYHNNRIIIPLAEQERILQLLQIRHAGIVKTKKTAQQLYFWPNINNDIKNMIENCDSCQKFLPSKPDEPIINSDAKDAMSHVASN 209
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BLAST of polyprotein vs. L. salmonis genes
Match: EMLSAG00000000532 (supercontig:LSalAtl2s:LSalAtl2s1085:182875:183799:-1 gene:EMLSAG00000000532 transcript:EMLSAT00000000532 description:"maker-LSalAtl2s1085-snap-gene-1.5")

HSP 1 Score: 93.9745 bits (232), Expect = 1.657e-22
Identity = 63/196 (32.14%), Postives = 96/196 (48.98%), Query Frame = 0 
Query:  138 RERLVSFAFDLEWNAGKTHLIADALSRAPV-EPPDD-----------------------IVDVGVNMVAAPAIPSFVPAF--GKEPYLSWVRDFHRNHQVRDLRYVWDSVSEVD----GMLVVDGRRIIVPIQARRDLLEVLHVPHLGAEMTMKNAEELLFWPGMREDIYKLVAQCEKCQKNRPSLPKEPFLTTAA 303
            +E+L  + F+LE   GK+H I D LSRAPV +PP++                       ++D  VN +    I   + AF  G E     +R F  NH  + L  +WD +S  D     +L+ D  RIIVP      ++++LH+PH     T + A++L FWP +  DI  ++ +C+  QK  PS P EP + + A
Sbjct:    7 KEKLNYYNFELECVTGKSHEIVDVLSRAPVFDPPEESDEEFEDNTVLCDKICMDPSVQQLIDAVVNDIEYQMI---LHAFRLGTE-----MRKFPINHPAKQLSSIWDQLSLFDYDEYTLLIHDYNRIIVPSAEGERIVQLLHIPHECILKTRQTAQQLYFWPNINNDIKNMIEKCDSFQKFLPSKPDEPTINSEA 194
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BLAST of polyprotein vs. L. salmonis genes
Match: EMLSAG00000003018 (supercontig:LSalAtl2s:LSalAtl2s1710:97106:98011:-1 gene:EMLSAG00000003018 transcript:EMLSAT00000003018 description:"augustus-LSalAtl2s1710-processed-gene-0.3")

HSP 1 Score: 77.411 bits (189), Expect = 1.624e-16
Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = 0 
Query:  202 VRDFHRNHQVRDLRYVWDSVSEVD----GMLVVDGRRIIVPIQARRDLLEVLHVPHLGAEMTMKNAEELLFWPGMREDIYKLVAQCEKCQKNRPSLPKEPFLTTAA 303
            ++ F  NH  + L  +WD +   D     +L+ D   IIVP   R  +L++L++PH G   T K A++L FW  +   I  ++  C+ CQK  PS P EP + + A
Sbjct:   12 MKKFSINHLAKQLWSIWDQLFLFDYGKYTLLIYDNNHIIVPSAERERILQLLYIPHAGIVKTRKTAQQLYFWSNINNYIKNMIZNCDSCQKFLPSKPDEPLINSEA 117
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BLAST of polyprotein vs. L. salmonis genes
Match: EMLSAG00000003260 (supercontig:LSalAtl2s:LSalAtl2s1792:19072:20636:1 gene:EMLSAG00000003260 transcript:EMLSAT00000003260 description:"snap-LSalAtl2s1792-processed-gene-0.6")

HSP 1 Score: 63.929 bits (154), Expect = 1.066e-11
Identity = 37/102 (36.27%), Postives = 51/102 (50.00%), Query Frame = 0 
Query:    8 FQWLPIQQRHFEELKEVLCGPLLVRPFDRDLPTDLLTDASRLHGLGFALVQRGTYGLPRLVQCGSRALSSAERNYATIKLELLAVAWATSKCAFYLLGCPIF 109
            + W   Q   FE++K  L        F  +  T L TDAS+  GLG+ L Q    G   +++  SR LS+AE+NY    LE++A+ WAT K        PIF
Sbjct:  292 YIWTKEQDVIFEDVKTSLVKLPQNSHFMPNRKTVLETDASKKKGLGYILRQEDNEGKWHVIEANSRWLSAAEQNYGMTTLEMMAIYWATKKLNAIFNDYPIF 393
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BLAST of polyprotein vs. SwissProt
Match: gi|558446106|sp|P0CT34.1|TF21_SCHPO (RecName: Full=Transposon Tf2-1 polyprotein; AltName: Full=Retrotransposable element Tf2 155 kDa protein >gi|558446108|sp|P0CT35.1|TF22_SCHPO RecName: Full=Transposon Tf2-2 polyprotein; AltName: Full=Retrotransposable element Tf2 155 kDa protein >gi|558446112|sp|P0CT37.1|TF24_SCHPO RecName: Full=Transposon Tf2-4 polyprotein; AltName: Full=Retrotransposable element Tf2 155 kDa protein >gi|558446122|sp|P0CT40.1|TF29_SCHPO RecName: Full=Transposon Tf2-9 polyprotein; AltName: Full=Retrotransposable element Tf2 155 kDa protein)

HSP 1 Score: 93.2041 bits (230), Expect = 1.186e-19
Identity = 89/325 (27.38%), Postives = 144/325 (44.31%), Query Frame = 0 
Query:    1 LVIKGTVFQWLPIQQRHFEELKEVLCGPLLVRPFDRDLPTDLLTDASRLHGLGFALVQRGTYGLPRLVQCGSRALSSAERNYATIKLELLAVAWATSKCAFYLLGC-PIFRVVTDHKPLVGLMDKPLHDIGNTRLQRLRERLVSFAFDLEWNAGKTHLIADALSRA--PVEP-PDDIVDVGVNMVAAPAIPSFVPAFGKEPYLSWVRDFH-RNHQVRDLRYVWDSVSEVDGMLVVDGRRIIVP--IQARRDLLEVLH----VPHLGAEMTMKNAEELLFWPGMREDIYKLVAQCEKCQKN-----RPSLPKEPFLTTAAAAPWST 309
            L+ K   ++W P Q +  E +K+ L  P ++R FD      L TDAS +  +G  L Q+        V   S  +S A+ NY+    E+LA+  +      YL      F+++TDH+ L+G +     +  N RL R +  L  F F++ +  G  + IADALSR     EP P D  D  +N V   +I      F  +    +  D    N    + + V +++   DG+L+    +I++P   Q  R +++  H    + H G E+          W G+R+ I + V  C  CQ N     +P  P +P     +  PW +
Sbjct:  669 LLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDV-AVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNE-SEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITD---DFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPI--PPSERPWES 986
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BLAST of polyprotein vs. SwissProt
Match: gi|558446118|sp|P0CT42.1|TF27_SCHPO (RecName: Full=Transposon Tf2-7 polyprotein; AltName: Full=Retrotransposable element Tf2 155 kDa protein >gi|558446120|sp|P0CT43.1|TF28_SCHPO RecName: Full=Transposon Tf2-8 polyprotein; AltName: Full=Retrotransposable element Tf2 155 kDa protein)

HSP 1 Score: 93.2041 bits (230), Expect = 1.209e-19
Identity = 89/325 (27.38%), Postives = 144/325 (44.31%), Query Frame = 0 
Query:    1 LVIKGTVFQWLPIQQRHFEELKEVLCGPLLVRPFDRDLPTDLLTDASRLHGLGFALVQRGTYGLPRLVQCGSRALSSAERNYATIKLELLAVAWATSKCAFYLLGC-PIFRVVTDHKPLVGLMDKPLHDIGNTRLQRLRERLVSFAFDLEWNAGKTHLIADALSRA--PVEP-PDDIVDVGVNMVAAPAIPSFVPAFGKEPYLSWVRDFH-RNHQVRDLRYVWDSVSEVDGMLVVDGRRIIVP--IQARRDLLEVLH----VPHLGAEMTMKNAEELLFWPGMREDIYKLVAQCEKCQKN-----RPSLPKEPFLTTAAAAPWST 309
            L+ K   ++W P Q +  E +K+ L  P ++R FD      L TDAS +  +G  L Q+        V   S  +S A+ NY+    E+LA+  +      YL      F+++TDH+ L+G +     +  N RL R +  L  F F++ +  G  + IADALSR     EP P D  D  +N V   +I      F  +    +  D    N    + + V +++   DG+L+    +I++P   Q  R +++  H    + H G E+          W G+R+ I + V  C  CQ N     +P  P +P     +  PW +
Sbjct:  669 LLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDV-AVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNE-SEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITD---DFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPI--PPSERPWES 986
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BLAST of polyprotein vs. SwissProt
Match: gi|558446103|sp|P0CT41.1|TF212_SCHPO (RecName: Full=Transposon Tf2-12 polyprotein; AltName: Full=Retrotransposable element Tf2 155 kDa protein >gi|558446110|sp|P0CT36.1|TF23_SCHPO RecName: Full=Transposon Tf2-3 polyprotein; AltName: Full=Retrotransposable element Tf2 155 kDa protein >gi|558446114|sp|P0CT38.1|TF25_SCHPO RecName: Full=Transposon Tf2-5 polyprotein; AltName: Full=Retrotransposable element Tf2 155 kDa protein >gi|558446116|sp|P0CT39.1|TF26_SCHPO RecName: Full=Transposon Tf2-6 polyprotein; AltName: Full=Retrotransposable element Tf2 155 kDa protein)

HSP 1 Score: 93.2041 bits (230), Expect = 1.266e-19
Identity = 89/325 (27.38%), Postives = 144/325 (44.31%), Query Frame = 0 
Query:    1 LVIKGTVFQWLPIQQRHFEELKEVLCGPLLVRPFDRDLPTDLLTDASRLHGLGFALVQRGTYGLPRLVQCGSRALSSAERNYATIKLELLAVAWATSKCAFYLLGC-PIFRVVTDHKPLVGLMDKPLHDIGNTRLQRLRERLVSFAFDLEWNAGKTHLIADALSRA--PVEP-PDDIVDVGVNMVAAPAIPSFVPAFGKEPYLSWVRDFH-RNHQVRDLRYVWDSVSEVDGMLVVDGRRIIVP--IQARRDLLEVLH----VPHLGAEMTMKNAEELLFWPGMREDIYKLVAQCEKCQKN-----RPSLPKEPFLTTAAAAPWST 309
            L+ K   ++W P Q +  E +K+ L  P ++R FD      L TDAS +  +G  L Q+        V   S  +S A+ NY+    E+LA+  +      YL      F+++TDH+ L+G +     +  N RL R +  L  F F++ +  G  + IADALSR     EP P D  D  +N V   +I      F  +    +  D    N    + + V +++   DG+L+    +I++P   Q  R +++  H    + H G E+          W G+R+ I + V  C  CQ N     +P  P +P     +  PW +
Sbjct:  669 LLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDV-AVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNE-SEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITD---DFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPI--PPSERPWES 986
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BLAST of polyprotein vs. SwissProt
Match: gi|28380144|sp|Q9UR07.1|TF211_SCHPO (RecName: Full=Transposon Tf2-11 polyprotein; AltName: Full=Retrotransposable element Tf2 155 kDa protein)

HSP 1 Score: 92.8189 bits (229), Expect = 1.352e-19
Identity = 89/325 (27.38%), Postives = 144/325 (44.31%), Query Frame = 0 
Query:    1 LVIKGTVFQWLPIQQRHFEELKEVLCGPLLVRPFDRDLPTDLLTDASRLHGLGFALVQRGTYGLPRLVQCGSRALSSAERNYATIKLELLAVAWATSKCAFYLLGC-PIFRVVTDHKPLVGLMDKPLHDIGNTRLQRLRERLVSFAFDLEWNAGKTHLIADALSRA--PVEP-PDDIVDVGVNMVAAPAIPSFVPAFGKEPYLSWVRDFH-RNHQVRDLRYVWDSVSEVDGMLVVDGRRIIVP--IQARRDLLEVLH----VPHLGAEMTMKNAEELLFWPGMREDIYKLVAQCEKCQKN-----RPSLPKEPFLTTAAAAPWST 309
            L+ K   ++W P Q +  E +K+ L  P ++R FD      L TDAS +  +G  L Q+        V   S  +S A+ NY+    E+LA+  +      YL      F+++TDH+ L+G +     +  N RL R +  L  F F++ +  G  + IADALSR     EP P D  D  +N V   +I      F  +    +  D    N    + + V +++   DG+L+    +I++P   Q  R +++  H    + H G E+          W G+R+ I + V  C  CQ N     +P  P +P     +  PW +
Sbjct:  669 LLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDV-AVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNE-SEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITD---DFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPI--PPSERPWES 986
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BLAST of polyprotein vs. SwissProt
Match: gi|146291076|sp|Q7LHG5.2|YI31B_YEAST (RecName: Full=Transposon Ty3-I Gag-Pol polyprotein; AltName: Full=Gag3-Pol3; AltName: Full=Transposon Ty3-2 TYA-TYB polyprotein; Contains: RecName: Full=Capsid protein; Short=CA; AltName: Full=p24; Contains: RecName: Full=Spacer peptide p3; Contains: RecName: Full=Nucleocapsid protein p11; Short=NC; Contains: RecName: Full=Ty3 protease; Short=PR; AltName: Full=p16; Contains: RecName: Full=Spacer peptide J; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Short=RT-RH; AltName: Full=p55; Contains: RecName: Full=Integrase p52; Short=IN; Contains: RecName: Full=Integrase p49; Short=IN)

HSP 1 Score: 89.7373 bits (221), Expect = 1.613e-18
Identity = 80/311 (25.72%), Postives = 139/311 (44.69%), Query Frame = 0 
Query:    9 QWLPIQQRHFEELKEVLCGPLLVRPFDRDLPTDLLTDASRLHGLGFALVQ-RGTYGLPRLVQCGSRALSSAERNYATIKLELLAVAWATSKCAFYLLGCPIFRVVTDHKPLVGLMDKPLHDIGNTRLQRLRERLVSFAFDLEWNAGKTHLIADALSRAPVEPPDDIVDVGVNMVAAPAIPSFVPAFGKEPYLSWV----------------RDFHRNHQVR-DLRYVWDSVSEVDGMLVVDGRRIIVPIQARRDLLEVLHVP-----HLGAEMTMKNAEELLFWPGMREDIYKLVAQCEKCQ---KNRPSL 293
            QW   Q +  E+LK  LC   ++ PF+      L TDAS+  G+G  L +      L  +V   S++L SA++NY   +LELL +  A      Y+L    F + TDH  L+ L +K   +    R+QR  + L ++ F LE+ AG  +++ADA+SRA       I  +           S+   +  +P  S V                    R++Q + +L   +     ++  ++    R++VPI+ +  ++ + H       H G  +T+     + +WP ++  I + +  C +CQ    +RP L
Sbjct:  883 QWTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASK-DGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFR-YMLHGKHFTLRTDHISLLSLQNK---NEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRA-------IYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQDRLVVPIKQQNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRL 1181
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BLAST of polyprotein vs. SwissProt
Match: gi|134034966|sp|Q99315.3|YG31B_YEAST (RecName: Full=Transposon Ty3-G Gag-Pol polyprotein; AltName: Full=Gag3-Pol3; AltName: Full=Transposon Ty3-1 TYA-TYB polyprotein; Contains: RecName: Full=Capsid protein; Short=CA; AltName: Full=p24; Contains: RecName: Full=Spacer peptide p3; Contains: RecName: Full=Nucleocapsid protein p11; Short=NC; Contains: RecName: Full=Ty3 protease; Short=PR; AltName: Full=p16; Contains: RecName: Full=Spacer peptide J; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Short=RT-RH; AltName: Full=p55; Contains: RecName: Full=Integrase p61; Short=IN; Contains: RecName: Full=Integrase p58; Short=IN)

HSP 1 Score: 88.9669 bits (219), Expect = 3.023e-18
Identity = 77/311 (24.76%), Postives = 137/311 (44.05%), Query Frame = 0 
Query:    9 QWLPIQQRHFEELKEVLCGPLLVRPFDRDLPTDLLTDASRLHGLGFALVQ-RGTYGLPRLVQCGSRALSSAERNYATIKLELLAVAWATSKCAFYLLGCPIFRVVTDHKPLVGLMDKPLHDIGNTRLQRLRERLVSFAFDLEWNAGKTHLIADALSRAPVEPPDDIVDVGVNMVAAPAIPSFVPAFGKEPYLSWV-----------------RDFHRNHQVRDLRYVWDSVSEVDGMLVVDGRRIIVPIQARRDLLEVLHVP-----HLGAEMTMKNAEELLFWPGMREDIYKLVAQCEKCQ---KNRPSL 293
            QW   Q +  ++LK+ LC   ++ PF+      L TDAS+  G+G  L +      L  +V   S++L SA++NY   +LELL +  A      Y+L    F + TDH  L+ L +K   +    R+QR  + L ++ F LE+ AG  +++ADA+SRA       +  +           S+   +  +P  S V                   F    +  +L   +     ++  ++    R++VPI+ +  ++ + H       H G  +T+     + +WP ++  I + +  C +CQ    +RP L
Sbjct:  857 QWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASK-DGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFR-YMLHGKHFTLRTDHISLLSLQNK---NEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRA-------VYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQDRLVVPIKQQNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRL 1155
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BLAST of polyprotein vs. SwissProt
Match: gi|38258172|sp|Q8I7P9.1|POL5_DROME (RecName: Full=Retrovirus-related Pol polyprotein from transposon opus; Includes: RecName: Full=Protease; Includes: RecName: Full=Reverse transcriptase; Includes: RecName: Full=Endonuclease)

HSP 1 Score: 83.5741 bits (205), Expect = 1.950e-16
Identity = 54/156 (34.62%), Postives = 83/156 (53.21%), Query Frame = 0 
Query:   18 FEELKEVLCG------PLLVRPFDRDLPTDLLTDASRLHGLGFALVQRGTYGLPRLVQCGSRALSSAERNYATIKLELLAVAWATSKCAFYLLGCPIFRVVTDHKPLV-GLMDKPLHDIGNTRLQRLRERLVSFAFDLEWNAGKTHLIADALSRAP 166
            F +LK +LC       P   +PF       L TDAS    +G A++ +   G  R +   SR+L+  E NYATI+ E+LA+ W+      YL G    +V TDH+PL   L ++      N +L+R + R+  +  +L +  GK++++ADALSR P
Sbjct:  413 FNDLKSILCSSEILAFPCFTKPFH------LTTDASNW-AIG-AVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNF----NAKLKRWKARIEEYNCELIYKPGKSNVVADALSRIP 556
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BLAST of polyprotein vs. SwissProt
Match: gi|130405|sp|P04323.1|POL3_DROME (RecName: Full=Retrovirus-related Pol polyprotein from transposon 17.6; Includes: RecName: Full=Protease; Includes: RecName: Full=Reverse transcriptase; Includes: RecName: Full=Endonuclease)

HSP 1 Score: 78.9518 bits (193), Expect = 5.582e-15
Identity = 59/153 (38.56%), Postives = 85/153 (55.56%), Query Frame = 0 
Query:   18 FEELKEVLCGPLLVRPFDRDLPTDLLTDASRLHGLGFALVQRGTYGLPRLVQCGSRALSSAERNYATIKLELLAVAWATSKCAFYLLGCPIFRVVTDHKPLVGL--MDKPLHDIGNTRLQRLRERLVSFAFDLEWNAGKTHLIADALSRAPVE 168
            F++LK ++    +++  D      L TDAS +  LG  L Q G + L  +    SR L+  E NY+TI+ ELLA+ WAT     YLLG   F + +DH+PL  L  M  P     N++L R R +L  F FD+++  GK + +ADALSR  +E
Sbjct:  487 FKKLKYLISEDPILKVPDFTKKFTLTTDASDV-ALGAVLSQDG-HPLSYI----SRTLNEHEINYSTIEKELLAIVWATKTFRHYLLG-RHFEISSDHQPLSWLYRMKDP-----NSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLE 627
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BLAST of polyprotein vs. SwissProt
Match: gi|130398|sp|P20825.1|POL2_DROME (RecName: Full=Retrovirus-related Pol polyprotein from transposon 297; Includes: RecName: Full=Protease; Includes: RecName: Full=Reverse transcriptase; Includes: RecName: Full=Endonuclease)

HSP 1 Score: 78.9518 bits (193), Expect = 6.351e-15
Identity = 59/154 (38.31%), Postives = 84/154 (54.55%), Query Frame = 0 
Query:   18 FEELKEVLC-GPLLVRPFDRDLPTDLLTDASRLHGLGFALVQRGTYGLPRLVQCGSRALSSAERNYATIKLELLAVAWATSKCAFYLLGCPIFRVVTDHKPLVGLMDKPLHDIGN--TRLQRLRERLVSFAFDLEWNAGKTHLIADALSRAPVE 168
            FE+LK ++   P+L  P D +    L TDAS L  LG  L Q G       +   SR L+  E NY+ I+ ELLA+ WAT     YLLG   F + +DH+PL     + LH++     +L+R R RL  + F +++  GK + +ADALSR  +E
Sbjct:  486 FEKLKALIIRDPILQLP-DFEKKFVLTTDASNL-ALGAVLSQNG-----HPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQ-FLIASDHQPL-----RWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRIKIE 626
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BLAST of polyprotein vs. SwissProt
Match: gi|130583|sp|P10401.1|POLY_DROME (RecName: Full=Retrovirus-related Pol polyprotein from transposon gypsy; Includes: RecName: Full=Reverse transcriptase; Includes: RecName: Full=Endonuclease)

HSP 1 Score: 74.7146 bits (182), Expect = 1.394e-13
Identity = 51/158 (32.28%), Postives = 79/158 (50.00%), Query Frame = 0 
Query:    9 QWLPIQQRHFEELKEVLCGPLLVRPF-DRDLPTDLLTDASRLHGLGFALVQRGTYGLPRLVQCGSRALSSAERNYATIKLELLAVAWATSKCAFYLLGCPIFRVVTDHKPLV-GLMDKPLHDIGNTRLQRLRERLVSFAFDLEWNAGKTHLIADALSR 164
            ++   Q+  F+ L+ +L    ++  + D   P DL TDAS   G+G  L Q G     R +   SR L   E+NYAT + ELLA+ WA  K   +L G     + TDH+PL   + D+      N +++R +  +      + +  GK + +ADALSR
Sbjct:  463 EFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDAS-ASGIGAVLSQEG-----RPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRN----TNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSR 610
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BLAST of polyprotein vs. nr
Match: gi|1247465354|gb|PCJ22642.1| (hypothetical protein COA94_08945, partial [Rickettsiales bacterium])

HSP 1 Score: 264.618 bits (675), Expect = 1.159e-77
Identity = 154/348 (44.25%), Postives = 198/348 (56.90%), Query Frame = 0 
Query:    1 LVIKGTVFQWLPIQQRHFEELKEVLCGPLLVRPFDRDLPTDLLTDASRLHGLGFALVQRGTYGLPRLVQCGSRALSSAERNYATIKLELLAVAWATSKCAFYLLGCPIFRVVTDHKPLVGLMDKPLHDIGNTRLQRLRERLVSFAFDLEWNAGKTHLIADALSRAPVEPPDDIVDV-----GVNMVAA-----------------PAIPSF------VPAFGKEPYLS---------WVRDFHRNHQVRDLRYVWDSVSEV-DGMLVVDGRRIIVPIQARRDLLEVLHVPHLGAEMTMKNAEELLFWPGMREDIYKLVAQCEKCQKNRPSLPKEPF-LTTAAAAPWST 309
            L+ K   FQWL   Q  FE++K +L   ++V+PFD  L T++LTDASRLHGLG+ALVQR      RL+QCGSR+L  AE  YAT +LE LA+AWA + C FYL G   F VVTDH+PLVG   KPL +I N RL R+RE+LV+F FD+ W  GK H IADALSR+P+  PD I D      G+  + A                  ++ +F        A   E Y S          +RD  R+H  R  R  W+ +S   D +L+VD  RIIVP   R  +L+++H  H G   T   A+E  FWP M+ DI K++ QCE CQ+ RPSLPKEP  L   A  P  +
Sbjct:  317 LLKKNIAFQWLAEHQSAFEQIKALLVSDMIVKPFDTALRTEILTDASRLHGLGYALVQRNEDDSLRLIQCGSRSLLPAESRYATNELEALAIAWAITDCKFYLAGAN-FTVVTDHRPLVGTFAKPLGEIANARLLRIREKLVNFTFDIVWTPGKVHFIADALSRSPIFHPDAINDALSDDEGIADICAVHTYTVDNSYVYETADVQSLQNFNMEVMQSAAREDEAYSSTLRALREGKQLRDLPRDHPARAYRDQWEQMSICQDDILIVDFMRIIVPRSLRAKILQLIHQGHAGYVRTKALAQEYYFWPSMKRDIQKMIEQCEPCQRLRPSLPKEPLQLHKKATEPMES 663
[Close]
BLAST of polyprotein vs. nr
Match: gi|1061482737|gb|ODN00004.1| (Transposon Tf2-6 polyprotein [Orchesella cincta])

HSP 1 Score: 201.06 bits (510), Expect = 3.197e-54
Identity = 122/347 (35.16%), Postives = 175/347 (50.43%), Query Frame = 0 
Query:    1 LVIKGTVFQWLPIQQRHFEELKEVLCGPLLVRPFDRDLPTDLLTDASRLHGLGFALVQRGTYGLPRLVQCGSRALSSAERNYATIKLELLAVAWATSKCAFYLLGCPIFRVVTDHKPLVGLMD-KPLHDIGNTRLQRLRERLVSFAFDLEWNAGKTHLIADALSRAPVEPP----DDIVDVGVNMVAAPAIPSFVPAFGKEPYLSWVRDF--------------------HRNHQVRDLRYVWDSVSE--VDGMLVVDGRRIIVPIQARRDLLEVLHVPHLGAEMTMKNAEELLFWPGMREDIYKLVAQCEKCQKNRPSLPKEPFLTTAAAAPWSTSTSSRPSPCTG 320
            L+ K   F W P+ Q+ F+E+ +    P ++  FD   P  L TD ++  GLGFAL Q  +    +L+Q GSR ++  E  Y+  ++ELLAV WA  KC  +LLG P F +V DH+PLV +++ K L +I N RLQRL+E+L  F   + W AGK H++ D  SR P   P    ++  DV  N  A    P       ++P L  V+D                     H+ +  RDL   W    E  V+  +++ GRRI++P   RR++LE LH  H G E T++ A + +FWP +  D+  LV  C +C    PS  KEP L           + SRP  C G
Sbjct:  689 LLPKNAAFIWEPLHQKAFQEIIQEFSSPRILAQFDPSRPVRLETDGAQSKGLGFALWQEQSDNSWKLLQAGSRFVTPTEARYSATEIELLAVTWAVKKCRMFLLGKP-FELVVDHRPLVSILNAKTLDEIENPRLQRLKEKLACFRPQVVWRAGKQHIVVDVFSRYPSSTPTAEEEEDFDVPTNFAAILKDPEDGTDILQDPILVAVKDAGGICSEYGRLIQLIRIGFPEHKQNLDRDLAPYWKIKDELRVEEGIIMWGRRILIPEALRRNVLETLHASHQGQERTLRRARQAVFWPNISNDVKNLVRGCNECASRLPSHQKEPMLV--------EQSCSRPFQCVG 1026
[Close]
BLAST of polyprotein vs. nr
Match: gi|1236542715|gb|PAA65850.1| (hypothetical protein BOX15_Mlig025290g1 [Macrostomum lignano])

HSP 1 Score: 189.889 bits (481), Expect = 1.872e-50
Identity = 119/326 (36.50%), Postives = 175/326 (53.68%), Query Frame = 0 
Query:    1 LVIKGTVFQWLPIQQRHFEELKEVLCGPLLVRPFDRDLPTDLLTDASRLHGLGFALVQRGTYGLPRLVQCGSRALSSAERNYATIKLELLAVAWATSKCAFYLLGCPIFRVVTDHKPLVGLMDK-PLHDIGNTRLQRLRERLVSFAFDLEWNAGKTHLIADALSRAPVEPPDDIVDVG------------VNMVAA---PAIPSFVPAFGKEPYL----SWVRDFHRNHQ------VRDLRYVWDSVSEVDGMLVVDGRRIIVPIQARRDLLEVLHVPHLGAEMTMKNAEELLFWPGMREDIYKLVAQCEKCQKNRPSLPKEPFLT 300
            L+ +  +FQW    Q  FEE +  L     +  +D+  PT L TDASRL G+GF L Q+ T G  R+VQ GSR +S  E  YA I+LELLAV WAT KC  +L G   F +VTDHKPL+ +++   L  I N R+QRLR +L  + +   W  GK +  ADALSRAPV+ P    ++G            +++ +A   P + S   +   +  L     ++RD   N +      +R   +V D +S  DG+++  G R ++P   R+ +L  LH  H G   T + A  +++WPG+  DI   V QC+ C+++ PS  +EP  T
Sbjct:  415 LLSEKNLFQWGDEHQTAFEEARRRLAIAPTLAYYDQRKPTALHTDASRLKGIGFLLKQQQTDGSWRVVQAGSRFISETESRYAMIELELLAVVWATQKCRLFLEGLHEFEIVTDHKPLIPILNSYQLDQIENPRIQRLRAKLNRYVYKARWVKGKDNADADALSRAPVDNPTAQDELGESADFQLTNQLLMHLESAELDPILQSVRQSTASDQELQDLMQYIRDGFPNDKANLPLCIRSFWHVRDKLSVDDGIILC-GCRCVIPHAMRKQILTDLHASHQGLHKTKQRARMVVYWPGIDRDIENTVKQCQSCREHLPSQIREPMTT 739
[Close]
BLAST of polyprotein vs. nr
Match: gi|1022764754|gb|KZS10109.1| (Uncharacterized protein APZ42_025501 [Daphnia magna])

HSP 1 Score: 174.866 bits (442), Expect = 4.524e-45
Identity = 118/335 (35.22%), Postives = 161/335 (48.06%), Query Frame = 0 
Query:    8 FQWLPIQQRHFEELKEVLCGPLLVRPFDRDLPTDLLTDASRLHGLGFALVQRGTYGLP-RLVQCGSRALSSAERNYATIKLELLAVAWATSKCAFYLLGCPIFRVVTDHKPLVGLMDK-PLHDIGNTRLQRLRERLVSFAFDLEWNAGKTHLIADALSRAPVEPP--DD---------------------------------------IVDVGVNMVAAPAIPSFVPAFGKEPYLSWVRDFHRNHQVRDLRYVWDSVSEVDGMLVVDGRRIIVPIQARRDLLEVLHVPHLGAEMTMKNAEELLFWPGMREDIYKLVAQCEKCQKNRPSLPKEPFL 299
            + W     R FE +K  L  P ++  FD    T +  DASR +G+G+AL+QR  +G   RLV   SR  +  E  YA ++LEL AV WA  KC  YL G P F ++ DH+ LV ++DK  L  I N ++QRL+ERL  ++F   W  GK H I DALSRAPV  P  DD                                       + D+     A P     + A   E      R    NH VR    + D +S  DG LV+ G RI+VP+  RR++L  LH  H G   T + A++ ++WPG+  DI  LV +C  CQ+   S  +EP +
Sbjct: 1645 YTWNADHYRAFEAVKAALVSPPVLVHFDPARETTIQVDASRKNGMGYALLQR--HGDSWRLVDANSRWCTDTESRYAIVELELAAVEWAIRKCRLYLSGLPNFTLMVDHQALVAILDKYTLDAIDNPKIQRLKERLSPYSFTTVWRRGKDHAIPDALSRAPVNDPVADDECVGEELAFSVRHVIIRSVNAITESEDDLGPQHHLPDNLLTDLQSGAAADPHYRDLIAAV--ESGFPTNRTLTPNH-VRQFWSIRDQLSTDDG-LVLYGSRIVVPLALRRNVLTKLHAAHQGIVRTKRRAQQTVYWPGITNDITMLVERCATCQERLASQGQEPLM 1973
[Close]
BLAST of polyprotein vs. nr
Match: gi|1022767061|gb|KZS11960.1| (Uncharacterized protein APZ42_023219 [Daphnia magna])

HSP 1 Score: 173.326 bits (438), Expect = 1.244e-44
Identity = 116/333 (34.83%), Postives = 162/333 (48.65%), Query Frame = 0 
Query:    8 FQWLPIQQRHFEELKEVLCGPLLVRPFDRDLPTDLLTDASRLHGLGFALVQRGTYGLPRLVQCGSRALSSAERNYATIKLELLAVAWATSKCAFYLLGCPIFRVVTDHKPLVGLMDK-PLHDIGNTRLQRLRERLVSFAFDLEWNAGKTHLIADALSRAPV------------------------------------EPPDDIVD-VGVNMVAAPAIPSFVPAFGK--EPYLSWVRDFHRNHQVRDLRYVWDSVSEVDGMLVVDGRRIIVPIQARRDLLEVLHVPHLGAEMTMKNAEELLFWPGMREDIYKLVAQCEKCQKNRPSLPKEPFLT 300
            F W P  ++ FE +K  L  P ++  F+ D  T L  DASR +G+G+AL+Q                    E  YA ++LEL AV WA  KC  YL G P F V+ DH+ LV ++DK  L  I N ++QRL+ERL +++F   W  GK H I DALSRAPV                                    E PD +VD + + + +A    S      K  E      R  + +H VR    +   ++  DG+++  G RI+VP+ ARR++L  LH  H G   T + A++ +FWPG+  DI  LV QC  CQ+  PS  +EP LT
Sbjct:  799 FIWTPDHEQAFENVKLALVSPPVLVHFEPDRETTLQVDASRKNGMGYALLQH------------------TESQYAIVELELAAVEWAIRKCRLYLSGLPTFTVMVDHQALVAILDKYTLDAIENPKIQRLKERLSTYSFTTIWRKGKDHAIPDALSRAPVNDPAKDDECVGTELAYSIQQAVIQNVNTICHLDDESEGPDQLVDSLLLELRSAATTDSKYADLIKAVESGFPSSRQQYPDH-VRQFWSIRHQLAVEDGIILF-GSRIVVPLAARREILRKLHSAHQGIVRTKRRAQQTVFWPGITNDITMLVEQCSPCQERLPSQCQEPMLT 1111
[Close]
BLAST of polyprotein vs. nr
Match: gi|1022775365|gb|KZS19237.1| (Uncharacterized protein APZ42_014385 [Daphnia magna])

HSP 1 Score: 171.785 bits (434), Expect = 4.695e-44
Identity = 119/338 (35.21%), Postives = 163/338 (48.22%), Query Frame = 0 
Query:    8 FQWLPIQQRHFEELKEVLCGPLLVRPFDRDLPTDLLTDASRLHGLGFALVQRGTYGLPRLVQCGSRALSSAERNYATIKLELLAVAWATSKCAFYLLGCPIFRVVTDHKPLVGLMDK-PLHDIGNTRLQRLRERLVSFAFDLEWNAGKTHLIADALSRAPVEPP--------DDIVDVGVNM----VAAPAIPSFVPAFGKEPYL---SWVRD--------------------------FHRNHQVR--DLRYVWDSVSE--VDGMLVVDGRRIIVPIQARRDLLEVLHVPHLGAEMTMKNAEELLFWPGMREDIYKLVAQCEKCQKNRPSLPKEPFL 299
            + W P Q+  F  +K  L  P ++  F+ +L T L  DASR +G+G+AL+QR    + +LV   SR  +  E  YA ++LEL AV WA  KC  YLLG P F ++ D   LV ++D+  L  + N +LQRL+ERL  + F   W     H I DALSRAPV  P        DD+      M    VAA    S       EP L   S  RD                          F   H +    +R  W    E  VD  LV+ G+RI++P ++RRD+L  LHV H G     + A + ++WPG+  DI   V +C+ CQ+  PS  +EP L
Sbjct:  576 YVWTPDQESAFVAVKAALTAPPILAHFNPELDTLLQVDASRKNGMGYALLQRHN-KVWKLVDANSRWCTDTETRYAIVELELAAVEWAMRKCKLYLLGLPTFTLMIDPHALVTILDRYTLDAVENPKLQRLKERLTPYVFTTVWRKWLDHAIPDALSRAPVNDPGPEDEAANDDVQAFARTMTLRRVAAITATSSDDDDQSEPSLDSPSVRRDMVIDSLREVAAVDAAYWELIDAVESGFSTRHDMTAPSVRQYWTIRQELSVDDGLVLFGKRIVIPQRSRRDILAKLHVAHQGIVRMKRRARQTIYWPGLNNDIISKVERCQACQERLPSQKREPLL 912
[Close]
BLAST of polyprotein vs. nr
Match: gi|1236525117|gb|PAA50313.1| (hypothetical protein BOX15_Mlig015377g3 [Macrostomum lignano])

HSP 1 Score: 169.088 bits (427), Expect = 4.040e-43
Identity = 106/311 (34.08%), Postives = 155/311 (49.84%), Query Frame = 0 
Query:    8 FQWLPIQQRHFEELKEVLCGPLLVRPFDRDLPTDLLTDASRLHGLGFALVQRGTYGLPRLVQCGSRALSSAERNYATIKLELLAVAWATSKCAFYLLGCPIFRVVTDHKPLVGLMDK-PLHDIGNTRLQRLRERLVSFAFDLEWNAGKTHLIADALSRAPVEPP----------DDIVDVGVNMVAAPAIPSFVPAFGKEPYLSWVRDFHRNHQVRD------LRYVWDSVSE--VDGMLVVDGRRIIVPIQARRDLLEVLHVPHLGAEMTMKNAEELLFWPGMREDIYKLVAQCEKCQKNRPSLPKEPFL 299
            F W    ++ F+ +++ L     +  +D    T L TDASRL GLGF L Q+   G+ ++VQ GSR +S  ER YA I+LELLAV WA  KC  +L G   F ++ DHKPL  ++++  L  I N RLQRLR++L  F +   W  G  H  ADALSRAPVEP           +  + + ++ + A        A   + Y    R   +            LR  W+   +  V+  L+V GRR+++P + R ++L  +   H G     + A    +WPG+  DI     +C  CQ+  PS  KEP +
Sbjct:  571 FMWSCEHEKAFDSMRKELSNVPTMAYYDHTRQTALHTDASRLKGLGFVLKQKQDNGIWKVVQAGSRFISETERRYAMIELELLAVVWAAKKCRLFLEGLQNFEIIIDHKPLEPILNRYTLDQIENPRLQRLRQKLDCFQYTARWVKGSDHKAADALSRAPVEPATKDEELAEEHESNIIMAIDEIQASEAELTRIARRDQEYQELKRLVQQGFPNEKGNVPVHLRQFWNIRDKLAVEHDLIVVGRRLLIPKEMRAEVLNRMLKMHQGVVKMKERARMTFYWPGIDNDIEMSARKCIPCQETLPSQVKEPMV 881
[Close]
BLAST of polyprotein vs. nr
Match: gi|1236528958|gb|PAA53549.1| (hypothetical protein BOX15_Mlig015377g1 [Macrostomum lignano])

HSP 1 Score: 168.703 bits (426), Expect = 4.873e-43
Identity = 106/311 (34.08%), Postives = 155/311 (49.84%), Query Frame = 0 
Query:    8 FQWLPIQQRHFEELKEVLCGPLLVRPFDRDLPTDLLTDASRLHGLGFALVQRGTYGLPRLVQCGSRALSSAERNYATIKLELLAVAWATSKCAFYLLGCPIFRVVTDHKPLVGLMDK-PLHDIGNTRLQRLRERLVSFAFDLEWNAGKTHLIADALSRAPVEPP----------DDIVDVGVNMVAAPAIPSFVPAFGKEPYLSWVRDFHRNHQVRD------LRYVWDSVSE--VDGMLVVDGRRIIVPIQARRDLLEVLHVPHLGAEMTMKNAEELLFWPGMREDIYKLVAQCEKCQKNRPSLPKEPFL 299
            F W    ++ F+ +++ L     +  +D    T L TDASRL GLGF L Q+   G+ ++VQ GSR +S  ER YA I+LELLAV WA  KC  +L G   F ++ DHKPL  ++++  L  I N RLQRLR++L  F +   W  G  H  ADALSRAPVEP           +  + + ++ + A        A   + Y    R   +            LR  W+   +  V+  L+V GRR+++P + R ++L  +   H G     + A    +WPG+  DI     +C  CQ+  PS  KEP +
Sbjct:  799 FMWSCEHEKAFDSMRKELSNVPTMAYYDHTRQTALHTDASRLKGLGFVLKQKQDNGIWKVVQAGSRFISETERRYAMIELELLAVVWAAKKCRLFLEGLQNFEIIIDHKPLEPILNRYTLDQIENPRLQRLRQKLDCFQYTARWVKGSDHKAADALSRAPVEPATKDEELAEEHESNIIMAIDEIQASEAELTRIARRDQEYQELKRLVQQGFPNEKGNVPVHLRQFWNIRDKLAVEHDLIVVGRRLLIPKEMRAEVLNRMLKMHQGVVKMKERARMTFYWPGIDNDIEMSARKCIPCQETLPSQVKEPMV 1109
[Close]
BLAST of polyprotein vs. nr
Match: gi|1022755988|gb|KZS02847.1| (Uncharacterized protein APZ42_034555 [Daphnia magna])

HSP 1 Score: 164.851 bits (416), Expect = 1.101e-41
Identity = 113/339 (33.33%), Postives = 159/339 (46.90%), Query Frame = 0 
Query:    6 TVFQWLPIQQRHFEELKEVLCGPLLVRPFDRDLPTDLLTDASRLHGLGFALVQRGTYGLP-RLVQCGSRALSSAERNYATIKLELLAVAWATSKCAFYLLGCPIFRVVTDHKPLVGLMDK-PLHDIGNTRLQRLRERLVSFAFDLEWNAGKTHLIADALSRAPVE---PPDDIVDVGVNMVAAPAIPSFVPAFGK------------------EPYLSWVR-------DFH-------------RNHQVRDLRYVWDSVSE--VDGMLVVDGRRIIVPIQARRDLLEVLHVPHLGAEMTMKNAEELLFWPGMREDIYKLVAQCEKCQKNRPSLPKEPFL 299
            T F W       F  +K+ L  P ++  F   L T L  DASR +G+G+ L+Q   +G   +LV   SR  +  E  YA ++LEL AV WA  KC  +LLG P F++V DH+ LV ++DK  L  + N +LQRL++RL  F F   W     H I DALSRAPV    P D++    +   +   +  +V A  +                  +P L  +R       D+              R+     +R  W    +  VD  LV+ GRRI+VP  ARR+ L  LH  H G     + A + +FW G+  DI  LV  C+ CQ+  P   KEP +
Sbjct:  777 TPFVWTTDTDSAFSAVKKALVAPPVLAHFHPALETSLQVDASRKNGMGYVLLQ--LHGSTWKLVDANSRWCTDTESRYAIVELELAAVEWAMRKCRLHLLGLPKFQLVVDHQALVTILDKFTLEAVENPKLQRLKKRLSPFIFTTPWRKEHHHAIPDALSRAPVNDPCPDDEVASTEIQSFSRRVVTRYVSAMHRTDEDVADSDATEELPHLPDPMLDDLRVAAPSDADYAELIAAIIDGFTVPRHQTAPGVRQFWKMREDLSVDDGLVLFGRRIVVPKSARREFLLKLHAAHQGIVRMKRRARQTVFWQGISNDITLLVESCQNCQERLPRQQKEPLM 1113
[Close]
BLAST of polyprotein vs. nr
Match: gi|1022760095|gb|KZS06349.1| (Uncharacterized protein APZ42_030234, partial [Daphnia magna])

HSP 1 Score: 160.229 bits (404), Expect = 3.701e-40
Identity = 118/353 (33.43%), Postives = 178/353 (50.42%), Query Frame = 0 
Query:    1 LVIKGTVFQWLPIQQRHFEELKEVLCGPLLVRPFDRDLPTDLLTDASRLHGLGFALVQRGTYGLPRLVQCGSRALSSAERNYATIKLELLAVAWATSKCAFYLLGCPIFRVVTDHKPLVGLM-DKPLHDIGNTRLQRLRERLVSFAFDLEWNAGKTHLIADALSRAPVEPPDDIVDVG---------VNMV--------AAPAI--PSFVPAFGKEPYLSWVR----DFHRNHQVR---DLRYVWD-----SVSEVDGMLVVDGRRIIVPIQARRDLLEVLHVPHLGAEMTMKNAEELLFWPGMREDIYKLVAQCEKCQKNRPSLPKEPFLTTAAAA-PWSTSTSSRPSPCTG 320
            L+ K  V++W    ++ F+  +E L     +  +D   PT L  DASRL GLGF L Q+   G   +VQ GSR LS AE  YA I+LE LA AWA  KC  +L G P F++VTDH+PL+ ++ D  L  + N R+ RLR  +  ++F   W  GK +++ADALSR+PV+ P +  ++          +++V        A P +   S   A   +P +  +R    +   N +     +LR  W      SV + +G+++V G R+++P   R++++  L   H GA    + A   ++WP M  DI      C  C +  PS P EP L  A A+ P +    S P P T 
Sbjct:  706 LLRKDFVWEWTMQHEKDFKAARESLSSSSELSFYDPASPTSLHVDASRLRGLGFILRQQKNDGSWNVVQAGSRFLSDAESRYAMIELECLAAAWAMRKCRQFLEGLPSFQLVTDHRPLIPILNDYHLDKLDNPRILRLRLSMQRYSFVAVWVPGKNNVMADALSRSPVDRPSESDEIAEGPQSFSARISLVDTMEGSNDANPDVLLSSVAAATSADPVMLSLRQTVLEGFPNEKCNLPLELRPYWQVRSQLSVDDAEGLILV-GPRVVIPTSLRQEIIRRLLQMHQGATKLRQRARLSIYWPSMDNDIVVAAKSCPSCTERLPSHPAEPLLPHAPASRPSAVGLKSFPFPDTN 1057
The following BLAST results are available for this feature:
BLAST of polyprotein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAG000000037701.880e-3031.73supercontig:LSalAtl2s:LSalAtl2s2036:9528:10163:-1 ... [more]
EMLSAG000000005321.657e-2232.14supercontig:LSalAtl2s:LSalAtl2s1085:182875:183799:... [more]
EMLSAG000000030181.624e-1633.96supercontig:LSalAtl2s:LSalAtl2s1710:97106:98011:-1... [more]
EMLSAG000000032601.066e-1136.27supercontig:LSalAtl2s:LSalAtl2s1792:19072:20636:1 ... [more]
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BLAST of polyprotein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
gi|558446106|sp|P0CT34.1|TF21_SCHPO1.186e-1927.38RecName: Full=Transposon Tf2-1 polyprotein; AltNam... [more]
gi|558446118|sp|P0CT42.1|TF27_SCHPO1.209e-1927.38RecName: Full=Transposon Tf2-7 polyprotein; AltNam... [more]
gi|558446103|sp|P0CT41.1|TF212_SCHPO1.266e-1927.38RecName: Full=Transposon Tf2-12 polyprotein; AltNa... [more]
gi|28380144|sp|Q9UR07.1|TF211_SCHPO1.352e-1927.38RecName: Full=Transposon Tf2-11 polyprotein; AltNa... [more]
gi|146291076|sp|Q7LHG5.2|YI31B_YEAST1.613e-1825.72RecName: Full=Transposon Ty3-I Gag-Pol polyprotein... [more]
gi|134034966|sp|Q99315.3|YG31B_YEAST3.023e-1824.76RecName: Full=Transposon Ty3-G Gag-Pol polyprotein... [more]
gi|38258172|sp|Q8I7P9.1|POL5_DROME1.950e-1634.62RecName: Full=Retrovirus-related Pol polyprotein f... [more]
gi|130405|sp|P04323.1|POL3_DROME5.582e-1538.56RecName: Full=Retrovirus-related Pol polyprotein f... [more]
gi|130398|sp|P20825.1|POL2_DROME6.351e-1538.31RecName: Full=Retrovirus-related Pol polyprotein f... [more]
gi|130583|sp|P10401.1|POLY_DROME1.394e-1332.28RecName: Full=Retrovirus-related Pol polyprotein f... [more]

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BLAST of polyprotein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1247465354|gb|PCJ22642.1|1.159e-7744.25hypothetical protein COA94_08945, partial [Rickett... [more]
gi|1061482737|gb|ODN00004.1|3.197e-5435.16Transposon Tf2-6 polyprotein [Orchesella cincta][more]
gi|1236542715|gb|PAA65850.1|1.872e-5036.50hypothetical protein BOX15_Mlig025290g1 [Macrostom... [more]
gi|1022764754|gb|KZS10109.1|4.524e-4535.22Uncharacterized protein APZ42_025501 [Daphnia magn... [more]
gi|1022767061|gb|KZS11960.1|1.244e-4434.83Uncharacterized protein APZ42_023219 [Daphnia magn... [more]
gi|1022775365|gb|KZS19237.1|4.695e-4435.21Uncharacterized protein APZ42_014385 [Daphnia magn... [more]
gi|1236525117|gb|PAA50313.1|4.040e-4334.08hypothetical protein BOX15_Mlig015377g3 [Macrostom... [more]
gi|1236528958|gb|PAA53549.1|4.873e-4334.08hypothetical protein BOX15_Mlig015377g1 [Macrostom... [more]
gi|1022755988|gb|KZS02847.1|1.101e-4133.33Uncharacterized protein APZ42_034555 [Daphnia magn... [more]
gi|1022760095|gb|KZS06349.1|3.701e-4033.43Uncharacterized protein APZ42_030234, partial [Dap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold1032_size68796supercontigscaffold1032_size68796:67783..68748 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold1032_size68796-processed-gene-0.9-mRNA-1snap_masked-scaffold1032_size68796-processed-gene-0.9-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold1032_size68796:67783..68748-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold1032_size68796-processed-gene-0.9 ID=snap_masked-scaffold1032_size68796-processed-gene-0.9|Name=polyprotein|organism=Tigriopus kingsejongensis|type=gene|length=966bp|location=Sequence derived from alignment at scaffold1032_size68796:67783..68748- (Tigriopus kingsejongensis)
GCGCTGGTTATTAAGGGGACCGTCTTCCAGTGGCTCCCCATCCAACAGAG
ACATTTCGAAGAGTTGAAGGAAGTTCTGTGTGGGCCACTCCTCGTCAGGC
CATTTGACCGAGATCTTCCGACCGACCTTTTGACTGACGCTTCGAGACTT
CATGGCTTGGGATTCGCCCTTGTACAGCGCGGCACCTACGGCCTCCCGCG
GCTGGTACAGTGCGGCTCGCGTGCACTCTCTTCGGCCGAGCGCAACTACG
CGACCATCAAGCTTGAGTTACTGGCGGTGGCGTGGGCGACTTCCAAGTGT
GCATTCTACCTCCTCGGCTGCCCCATCTTCCGCGTCGTCACCGACCATAA
GCCGTTGGTGGGGTTGATGGACAAACCGCTGCATGACATCGGCAATACGC
GGCTCCAGAGGCTACGGGAGCGGCTCGTCTCTTTTGCCTTTGACCTCGAG
TGGAATGCCGGGAAGACTCATCTGATAGCGGATGCTCTTTCGAGGGCGCC
AGTTGAGCCTCCGGACGACATCGTCGACGTGGGCGTGAACATGGTGGCGG
CGCCCGCGATCCCCTCCTTCGTTCCCGCGTTTGGAAAGGAACCATATTTG
TCGTGGGTCCGGGACTTTCACCGGAATCATCAAGTTCGTGACCTTCGTTA
TGTGTGGGACAGTGTCAGCGAGGTTGATGGCATGTTGGTCGTTGACGGGA
GACGTATCATCGTCCCAATACAGGCACGCCGCGACCTACTCGAGGTCCTC
CACGTCCCTCATCTGGGGGCGGAAATGACGATGAAGAACGCCGAAGAACT
CCTCTTTTGGCCTGGAATGCGAGAAGACATTTATAAGTTGGTTGCCCAAT
GCGAAAAGTGTCAAAAGAACCGACCAAGTTTGCCAAAGGAGCCGTTCTTG
ACCACGGCCGCGGCGGCCCCATGGAGCACGTCGACCTCTTCGAGGCCAAG
TCCGTGCACTGGCTAG
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Synonyms
The feature 'polyprotein' has the following synonyms
Synonym
Tk08173
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