replication factor c subunit 5, snap_masked-scaffold1455_size40601-processed-gene-0.3 (gene) Tigriopus kingsejongensis

Overview


Name	replication factor c subunit 5
Unique Name	snap_masked-scaffold1455_size40601-processed-gene-0.3
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of replication factor c subunit 5 vs. L. salmonis genes
Match: EMLSAG00000012858 (supercontig:LSalAtl2s:LSalAtl2s97:2549575:2550603:1 gene:EMLSAG00000012858 transcript:EMLSAT00000012858 description:"augustus_masked-LSalAtl2s97-processed-gene-25.0")

HSP 1 Score: 456.062 bits (1172), Expect = 2.046e-162
Identity = 214/328 (65.24%), Postives = 260/328 (79.27%), Query Frame = 0

Query:   10 NLPWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTRTIFNSG----FKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSMAFAEVNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQ-QLKALKGLALRDVLAEVHHFVHRLELPQAIKIHLLIRMAEVEHRLLNGANENTQLGSLLAAFQATREMIKDQAD 332
            NLPWVEKYRP  L EL+SHEDII TIR+F+   + PHLLFYGPPGTGKTS ILA A+EIY     NS VLELNASDDRGI+VVRG+ILNFAST+ +  SG    FKL+ILDEADAMTQDAQNALRRIIEKFT+NVRFCLIGNYLSKIIPALQSRCTRFRF PL  +QI+PRL+ + + E + +T DGE+AL+ LA GDMR+++NILQSCSMAF  VNE N+Y C GHPL SDIT  +  +LND L+  Y  +Q +L+  KGL+L D+L E+H  VHRLE+P  +K++LLI+MA  EHR+L+G +E  QLGS++ AF+  REMI ++ D
Sbjct:   10 NLPWVEKYRPKNLSELVSHEDIIGTIRRFVKEKRTPHLLFYGPPGTGKTSAILAAAREIYSEGGMNSAVLELNASDDRGIDVVRGRILNFASTKMVNFSGTNVPFKLIILDEADAMTQDAQNALRRIIEKFTENVRFCLIGNYLSKIIPALQSRCTRFRFAPLQSEQIIPRLRDIVEKESLELTPDGEKALLALAHGDMRRILNILQSCSMAFPVVNEANIYACTGHPLPSDITKALESLLNDXLSEXYHKIQNELQTNKGLSLIDILTELHLLVHRLEIPNKVKVYLLIKMAXAEHRMLSGXSEKMQLGSIVGAFRIAREMIANETD 337

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BLAST of replication factor c subunit 5 vs. L. salmonis genes
Match: EMLSAG00000008613 (supercontig:LSalAtl2s:LSalAtl2s530:662345:663412:-1 gene:EMLSAG00000008613 transcript:EMLSAT00000008613 description:"augustus_masked-LSalAtl2s530-processed-gene-6.5")

HSP 1 Score: 213.386 bits (542), Expect = 4.594e-67
Identity = 130/324 (40.12%), Postives = 188/324 (58.02%), Query Frame = 0

Query:   12 PWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFA---STRTIFNSG----FKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPIT-ADGEEALMTLAQGDMRKVINILQSCS--MAFAEVNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQQLKAL------KGLALRDVLAEVHHFVHRLE---LPQAIKIHLLIRMAEVEHRLLNGANENTQLGSL 316
            PWVEKYRP  + ++   +++I  ++K +    LP+LLFYGPPGTGKTSTILA  +E++    +   +LELNASD+RGI+VVR +I NFA   +  T+ N      FK++ILDEAD+MT+DAQ+ALRR +EK   + +FCLI NY+S+II  L SRC +FRF PL    +  RL+ + Q EK+ I       A +  ++GD+R+ I  LQSCS   A   + ED V    G      I N   W+ +   A A  + ++++A       +G +   +  +VH +V   E        K ++   +A  EHRLL G+NE  Q+  L
Sbjct:   30 PWVEKYRPKTVDDVAYQDEVILVLKKSLQGADLPNLLFYGPPGTGKTSTILAACRELF-GDAYKDRILELNASDERGISVVRHKIKNFAKLTAGGTLPNGKSCPPFKVIILDEADSMTKDAQSALRRTMEKEGKSTKFCLICNYVSRIIEPLTSRCAKFRFKPLEKSILSIRLESIAQKEKLNIKDTKALNAFIQTSEGDLRRAITSLQSCSRFSAGTPITEDIVLETAGV-----IPN--EWISSLKKACASNSYEKVEAFVDNLIAEGYSASQLFIQVHEWVLSPEDHDFKDIGKANIAEAIAVNEHRLLEGSNEYLQIMDL 345

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BLAST of replication factor c subunit 5 vs. L. salmonis genes
Match: EMLSAG00000008581 (supercontig:LSalAtl2s:LSalAtl2s52:19609:187927:1 gene:EMLSAG00000008581 transcript:EMLSAT00000008581 description:"maker-LSalAtl2s52-snap-gene-2.23")

HSP 1 Score: 202.601 bits (514), Expect = 4.576e-63
Identity = 102/212 (48.11%), Postives = 143/212 (67.45%), Query Frame = 0

Query:   12 PWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFA---STRTIFNSG----FKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPIT-ADGEEALMTLAQGDMRKVINILQSCS 215
            PWVEKYRP  + ++   +++I  ++K +    LP+LLFYGPPGTGKTSTILA  +E++    +   +LELNASD+RGI+VVR +I NFA   +  T+ N      FK++ILDEAD+MT+DAQ+ALRR +EK   + +FCLI NY+S+II  L SRC +FRF PL    +  RLKF+ + E + I      +A +  ++GD+R+ I  LQSCS
Sbjct:   30 PWVEKYRPKTVDDVAYQDEVILVLKKSLQGADLPNLLFYGPPGTGKTSTILAACRELF-GDAYKDRILELNASDERGISVVRHKIKNFARLTAGGTLPNGKSCPPFKVIILDEADSMTKDAQSALRRTMEKEGKSTKFCLICNYVSRIIEPLTSRCAKFRFKPLEKSILAKRLKFIAEKEMLNIKDTKAIDAFIQTSEGDLRRAITSLQSCS 240

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BLAST of replication factor c subunit 5 vs. L. salmonis genes
Match: EMLSAG00000002792 (supercontig:LSalAtl2s:LSalAtl2s1612:33818:37950:-1 gene:EMLSAG00000002792 transcript:EMLSAT00000002792 description:"maker-LSalAtl2s1612-augustus-gene-0.7")

HSP 1 Score: 130.568 bits (327), Expect = 4.366e-34
Identity = 67/208 (32.21%), Postives = 117/208 (56.25%), Query Frame = 0

Query:  111 KLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSMAFAEVNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQQLKALKGLALRDVLAEVHHFVHRLELPQAIKIHLLIRMAEVEHRLLNGANENTQLGSLLA 318
            K+++LDEAD+MT+ AQ ALRR +E ++D  RFCL  N   K+I  +QSRC   R+  L+  +IL ++  VC+ E +  T+DG EA++  AQGDMR+ +N LQS    F +++  NV+     P    + ++++      +  AY  +  L  L G +  D+++ +        + + +K+  +  + +   ++++G+N   QL  LLA
Sbjct:  397 KIIVLDEADSMTEAAQQALRRTMEIYSDTTRFCLACNASEKVIEPIQSRCAMLRYSKLSDAEILAQVLKVCEKEDISYTSDGLEAIVFTAQGDMRQALNNLQSTHDGFGQIDSKNVFKVCDEPHPLLVKDMLSNCTEGKIDEAYKVLSHLWRL-GYSPEDIISNIFRVCKTHPMAEYLKLEFIKEIGQAHMKIVHGSNSLLQLSGLLA 603

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BLAST of replication factor c subunit 5 vs. L. salmonis genes
Match: EMLSAG00000006217 (supercontig:LSalAtl2s:LSalAtl2s33:183428:185371:1 gene:EMLSAG00000006217 transcript:EMLSAT00000006217 description:"maker-LSalAtl2s33-augustus-gene-1.22")

HSP 1 Score: 107.842 bits (268), Expect = 4.869e-27
Identity = 73/235 (31.06%), Postives = 115/235 (48.94%), Query Frame = 0

Query:   13 WVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIY-----------------QSKEFNSMVL------ELNASD----DRGINVVRGQILNFASTRTIFN----SGFKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSM 216
            WV+KYRPN L +L       + +   + +   PHLL +GP G GK + I+A  +E+Y                   K+   M +      ELN SD    DR   V++  I N AS + I      + FK+V+L+E D +T+DAQ+ALRR +EK+T   R  L  N  SKIIPA++SRC   R    +   I+  L  V + E   +  +    +   +  ++R+ + + ++C +
Sbjct:    4 WVDKYRPNKLNKLDFGLKQAAYLETLVKSEDFPHLLIHGPSGAGKKTRIVALLRELYGPGVERLRIEHQNFETPSKKKLEIMTIASNYHIELNPSDVGIYDR--VVIQELIKNTASAQQIHGDSQRASFKVVLLNEVDKLTKDAQHALRRTMEKYTSTCRLILCSNSTSKIIPAIKSRCLSIRIPAPSADDIIQILVTVSKKEGCLLPMELARRITEKSNRNLRRALLLTEACKV 236

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BLAST of replication factor c subunit 5 vs. L. salmonis genes
Match: EMLSAG00000012251 (supercontig:LSalAtl2s:LSalAtl2s893:96950:102673:1 gene:EMLSAG00000012251 transcript:EMLSAT00000012251 description:"maker-LSalAtl2s893-augustus-gene-0.10")

HSP 1 Score: 56.225 bits (134), Expect = 5.371e-9
Identity = 62/241 (25.73%), Postives = 101/241 (41.91%), Query Frame = 0

Query:    9 ENLPWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYG---------PP---------------------GTGKTSTI-LACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTRTIFN-SGFKLVILDEADAMTQDAQNALRRIIE------KFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINIL 211
            E+L WV+KY+P  L+ +I  +   S +RK +    L +   Y          PP                     G GKT+T  L C       KE    ++ELNASD R    +   +    S+R++   S  +++++DE D M   A N  R  I       K +     C+  +   + I +L + C   RF     +QI   +  +C  EK+ ++ D    L+T    D+R+V++ L
Sbjct:  421 ESLLWVDKYKPMNLKNIIGQQGDRSNMRKLLEW--LRNWSKYNENGPNKQKPPPRPSPWATAGDNGGWAKCALLSGVGKTTTASLVC-------KELGFDIMELNASDGRSKKSLDTNVKEALSSRSLSKISAKRVLLMDEVDGM---AGNEDRGGIAALILLLKSSKIPVICMCNDRNHEKIRSLANHCFDLRFQRPRLEQIKASMMSICFKEKIKVSPDAMAELITGCNNDVRQVLHNL 649

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BLAST of replication factor c subunit 5 vs. L. salmonis genes
Match: EMLSAG00000013000 (supercontig:LSalAtl2s:LSalAtl2s98:797939:799663:1 gene:EMLSAG00000013000 transcript:EMLSAT00000013000 description:"augustus_masked-LSalAtl2s98-processed-gene-8.2")

HSP 1 Score: 53.1434 bits (126), Expect = 5.263e-8
Identity = 63/224 (28.12%), Postives = 93/224 (41.52%), Query Frame = 0

Query:   10 NLPWVEKYRPNALQELISHEDIIST---IRKFISA--GKLPHLLFYGPPGTGKTS---TILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTRTIFNSGFKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIG----NYLSKIIPALQSRCTRFRFGPLNP-------QQILPRLKFV--CQAEKVPITADGEEALMTLAQGDMRKVINILQ 212
            NLP  E+ RP   +E +  E+I S+   IR  +    G +P+L+ +GPPG GKTS    IL   K+     +F  M   + A     IN VR  +    +  ++      ++ +DE     +  Q+A    IE  T      LIG    N    +  AL SRC       L P       ++ L +  F+     +K  IT      L  +  GD R  +N LQ
Sbjct:  153 NLPLAEEMRPKLFKEFVGQEEIFSSDVFIRSVLEKKNGNIPNLILWGPPGCGKTSIANIILQKCKDGDIKAKFVKMSAXVAA-----INDVREAVTKAKNEWSMLKRK-TIIFMDEIHRFNKIQQDAFLPHIENGT----IVLIGATTENPSFSLNNALLSRCRVLPLKKLTPPDLEVIMKRSLDKRGFILGVHIDKXAIT-----YLSNVCDGDARTALNSLQ 361

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BLAST of replication factor c subunit 5 vs. SwissProt
Match: gi|728777|sp|P40937.1|RFC5_HUMAN (RecName: Full=Replication factor C subunit 5; AltName: Full=Activator 1 36 kDa subunit; Short=A1 36 kDa subunit; AltName: Full=Activator 1 subunit 5; AltName: Full=Replication factor C 36 kDa subunit; Short=RF-C 36 kDa subunit; Short=RFC36)

HSP 1 Score: 494.197 bits (1271), Expect = 4.434e-176
Identity = 224/326 (68.71%), Postives = 273/326 (83.74%), Query Frame = 0

Query:    6 AKVENLPWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTRTIFNSGFKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSMAFAEVNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQQLKALKGLALRDVLAEVHHFVHRLELPQAIKIHLLIRMAEVEHRLLNGANENTQLGSLLAAFQATREMIKDQA 331
             K+ NLPWVEKYRP  L +LISH+DI+STI+KFI+  +LPHLL YGPPGTGKTSTILACAK++Y+ KEF SMVLELNASDDRGI+++RG IL+FASTRTIF  GFKLVILDEADAMTQDAQNALRR+IEKFT+N RFCLI NYLSKIIPALQSRCTRFRFGPL P+ ++PRL+ V + EKV I+ DG +AL+TL+ GDMR+ +NILQS +MAF +V E+ VYTC GHPLKSDI NI++WMLN    TAY N+ +LK LKGLAL D+L E+H FVHR++ P +++IHLL +MA++E+RL  G NE  QL SL+AAFQ TR++I  +A
Sbjct:   15 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA 340

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BLAST of replication factor c subunit 5 vs. SwissProt
Match: gi|30913281|sp|Q9D0F6.1|RFC5_MOUSE (RecName: Full=Replication factor C subunit 5; AltName: Full=Activator 1 36 kDa subunit; Short=A1 36 kDa subunit; AltName: Full=Activator 1 subunit 5; AltName: Full=Replication factor C 36 kDa subunit; Short=RF-C 36 kDa subunit; Short=RFC36)

HSP 1 Score: 493.041 bits (1268), Expect = 1.134e-175
Identity = 225/326 (69.02%), Postives = 272/326 (83.44%), Query Frame = 0

Query:    6 AKVENLPWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTRTIFNSGFKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSMAFAEVNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQQLKALKGLALRDVLAEVHHFVHRLELPQAIKIHLLIRMAEVEHRLLNGANENTQLGSLLAAFQATREMIKDQA 331
            A+  NLPWVEKYRP  L +LISH+DI+STI+KFIS  +LPHLL YGPPGTGKTSTILACAK++Y+ KEF SMVLELNASDDRGI++VRG IL+FASTRTIF  GFKLVILDEADAMTQDAQNALRR+IEKFT+N RFCLI NYLSKIIPALQSRCTRFRFGPL P+ ++PRL+ V Q E V I+ DG +AL+TL+ GDMR+ +NILQS +MAF +V E+ VYTC GHPLK+DI NI++WMLN    TAY N+ +LK LKGLAL D+L EVH FVHR++ P +++IHLL +MA++E+RL  G +E  QL SL+AAFQ TR++I  +A
Sbjct:   14 ARARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQDFTTAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKIQLSSLIAAFQVTRDLIVAEA 339

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BLAST of replication factor c subunit 5 vs. SwissProt
Match: gi|13431787|sp|O14003.2|RFC3_SCHPO (RecName: Full=Replication factor C subunit 3; Short=Replication factor C3)

HSP 1 Score: 354.369 bits (908), Expect = 7.784e-121
Identity = 165/311 (53.05%), Postives = 227/311 (72.99%), Query Frame = 0

Query:   11 LPWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTRTIFNSGFKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSMAFAEVNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQQLKALKGLALRDVLAEVHHFVHRLELPQAIKIHLLIRMAEVEHRLLNGANENTQLGSLLAAFQ 321
            LPWVEKYRP  L++++SH+DIIST+ KFIS+ ++PH+LFYGPPGTGKTSTILACA++IY    + + ++ELNASDDRGI+ VR QI NFASTR IF S FK++ILDEADAMT  AQNALRR+IEK+T NVRFC+I NY++KI PA+QSRCTRFRF PL P++I   +  V Q+E   I  D + A++ L++GDMRK +NILQ+C  A+  ++   +Y CVGHP  SDI   +  ++ND    A+  +  +K  KGLAL+D+L  +   +  LE+    KI +L ++A +EHR+  G +E  QL +++A+ +
Sbjct:   23 LPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIY-GPNYRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDMRKALNILQACHAAYDHIDVSAIYNCVGHPHPSDIDYFLKSIMNDEFVIAFNTISSIKQQKGLALQDILTCIFEALDELEIKPNAKIFILDQLATIEHRMSFGCSEKIQLSAMIASIK 332

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BLAST of replication factor c subunit 5 vs. SwissProt
Match: gi|55584161|sp|P34429.3|RFC5_CAEEL (RecName: Full=Probable replication factor C subunit 5; AltName: Full=Activator 1 subunit 5)

HSP 1 Score: 352.058 bits (902), Expect = 1.252e-119
Identity = 165/313 (52.72%), Postives = 223/313 (71.25%), Query Frame = 0

Query:   10 NLPWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTR------TIFNSG---FKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSMAFAEVNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQQLKALKGLALRDVLAEVHHFVHRLELPQAIKIHLLIRMAEVEHRLLNGANENTQL 313
            NLPWVEKYRP+ L EL++HE I+ T+ KFI    LPHLLFYGPPGTGKT+T+LA A+++Y   +  SMVLELNASD+RGI+VVR  I+NFA T+      T  N+G   FKLVILDEADAMT+DAQNALRR+IEK+TDNVRFC+I NYL+ I+PA+QSRCTRFRF PL+ + I+PRL+++ + E++ +T DG++AL+ +++GDMR VIN LQS +M+F  V+E+ VY C+G P   ++  +V  +LND        +Q      G AL+DV+  +H FV  L++P      ++  + EVE  L  G +  TQL
Sbjct:   28 NLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIGQPTPKEMKEVVKTLLNDPSKKCMNTIQTKLFENGYALQDVITHLHDFVFTLDIPDEAMSAIITGLGEVEENLSTGCSNETQL 340

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BLAST of replication factor c subunit 5 vs. SwissProt
Match: gi|75169932|sp|Q9CAQ8.1|RFC5_ARATH (RecName: Full=Replication factor C subunit 5; Short=AtRFC5; AltName: Full=Activator 1 subunit 5; AltName: Full=Protein EMBRYO DEFECTIVE 2810)

HSP 1 Score: 344.354 bits (882), Expect = 1.340e-116
Identity = 166/326 (50.92%), Postives = 233/326 (71.47%), Query Frame = 0

Query:   12 PWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTRT--IFNSGFKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSMAFAE--------VNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQQLKALKGLALRDVLAEVHHFVHRLELPQAIKIHLLIRMAEVEHRLLNGANENTQLGSLLAAFQATREMI 327
            PWVEKYRP +L ++ +H DII TI +  +  KLPHLL YGPPGTGKTSTILA A+++Y  K + +M+LELNASDDRGI+VVR QI +FAST++  +  S  KLV+LDEADAMT+DAQ ALRR+IEK+T + RF LIGN+++KIIPALQSRCTRFRF PL+   +  RLK V +AE++ ++  G  AL+ L+ GDMRK +NILQS  MA  E        + E++VY C G+PL  DI  I +W+LN      Y +V ++K  KGLA+ D++ E+  F+ ++++P A+++ L+  +A++E+RL  G N+  QLG++++ F   R +I
Sbjct:   40 PWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPK-YRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSDCGLAALVRLSNGDMRKALNILQSTHMASKEITEEESKQITEEDVYLCTGNPLPKDIEQISHWLLNKPFDECYKDVSEIKTRKGLAIVDIVKEITLFIFKIKMPSAVRVQLINDLADIEYRLSFGCNDKLQLGAIISTFTHARSII 364

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BLAST of replication factor c subunit 5 vs. SwissProt
Match: gi|585844|sp|P38629.1|RFC3_YEAST (RecName: Full=Replication factor C subunit 3; Short=Replication factor C3; AltName: Full=Activator 1 40 kDa subunit)

HSP 1 Score: 340.117 bits (871), Expect = 2.953e-115
Identity = 162/323 (50.15%), Postives = 228/323 (70.59%), Query Frame = 0

Query:    9 ENLPWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTRTIFNSGFKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSMAF-----AEVNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQQLKALKGLALRDVLAEVHHFVHRLELP-QAIKIHLLIRMAEVEHRLLNGANENTQLGSLLAAFQATRE 325
            ENLPWVEKYRP  L E+    ++I+T+RKF+  GKLPHLLFYGPPGTGKTSTI+A A+EIY  K +++MVLELNASDDRGI+VVR QI +FASTR IF+ GFKL+ILDEADAMT  AQNALRR+IE++T N RFC++ NY  K+ PAL SRCTRFRF PL  + I  R+  V   EK+ ++ + E+AL+ L+ GDMR+V+N+LQSC          E+++D +Y C G P  SD+  ++  +L D   TA+  + ++++ KGLAL D++  +   +   EL  +  ++HLL ++A++E+ +  G N+  Q  +++ A +A+ E
Sbjct:   11 ENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQGSAVIGAIKASFE 332

[Close]

BLAST of replication factor c subunit 5 vs. SwissProt
Match: gi|74855117|sp|Q54ST4.1|RFC5_DICDI (RecName: Full=Probable replication factor C subunit 5; AltName: Full=Activator 1 subunit 5)

HSP 1 Score: 335.109 bits (858), Expect = 2.886e-113
Identity = 166/323 (51.39%), Postives = 222/323 (68.73%), Query Frame = 0

Query:    7 KVENLPWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTRTIFNSG--FKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSMAFAE--VNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQQLKALKGLALRDVLAEVHHFVHRLELPQAIKIHLLIRMAEVEHRLLNGANENTQLGSLLAAFQATRE 325
            + E+LPWVEKYRP  L +LI+HEDI  TI K I    LPHLLFYGPPGTGKTSTI A A+++Y    ++ MVLELNASDDRGI+VVR QI  FAS+   FN+   +KL+ILDEAD+MT  AQ ALRR+IEK+T   RFC++ NY+ KIIPALQSRCTRFRF PL       RLK + + E V + +    A++ L  GDMRK +NILQS SM+  +  + E+ +Y C G+P+ SDI  +V+W+LN     A+ N+  LK  KGL+L D++A +  FV +++L   I   LL  ++++E+ L  G++E  QLGSL+  FQ +R+
Sbjct:   20 QFESLPWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLY-GDNYSRMVLELNASDDRGIDVVREQIKTFASSMFFFNTTVPYKLIILDEADSMTNIAQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKENVKVDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYPMPSDIELMVDWLLNSDYEEAFQNISDLKKKKGLSLNDIIATLQKFVVQIDLDNVILCKLLSHLSDIEYNLSIGSSEKLQLGSLVGCFQLSRD 341

[Close]

BLAST of replication factor c subunit 5 vs. SwissProt
Match: gi|75132556|sp|Q6YZ54.1|RFC3_ORYSJ (RecName: Full=Replication factor C subunit 3; Short=OsRFC3; AltName: Full=Activator 1 subunit 3)

HSP 1 Score: 335.495 bits (859), Expect = 3.129e-113
Identity = 158/316 (50.00%), Postives = 225/316 (71.20%), Query Frame = 0

Query:   12 PWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTRTIF---NSGFKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSMAFAEVNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQQLKALKGLALRDVLAEVHHFVHRLELPQAIKIHLLIRMAEVEHRLLNGANENTQLGSLLAAFQATR 324
            PWVEKYRP +L ++ +H DI+ TI +  +  +LPHLL YGPPGTGKTSTILA A+++Y S ++ +M+LELNASD+RGI+VVR QI +FAS R++        K+V+LDEADAMT+DAQ ALRR+IEK T + RF LI N+++KIIPALQSRCTRFRF PL+   +  RLK + Q+E + +   G  AL+ L+ GDMRK +NILQS  MA  ++ E+ VY C G+P+  DI  I  W+LN++ +T++  +  +K  KGLAL D++ EV  FV ++++P  ++I L+  +A++E+RL    N+  QLG+L++ F   R
Sbjct:   39 PWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGS-QYGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQSVKMVLLDEADAMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALNILQSTHMASKQITEEAVYLCTGNPMPKDIEQIAYWLLNESFSTSFKCISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRIKLINDLADIEYRLSFACNDKLQLGALISTFTGAR 353

[Close]

BLAST of replication factor c subunit 5 vs. SwissProt
Match: gi|30913228|sp|O74111.1|RFC3_BLAAD (RecName: Full=Replication factor C subunit 3; Short=Replication factor C3; AltName: Full=Activator 1 subunit 3)

HSP 1 Score: 328.946 bits (842), Expect = 5.317e-111
Identity = 164/328 (50.00%), Postives = 224/328 (68.29%), Query Frame = 0

Query:    3 ELVAKVEN-LPWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTRTIFNSGFKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSM---AFAEVNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQQLKALKGLALRDVLAEVHHFVHRLELPQAIKIHLLIRMAEVEHRLLNGANENTQLGSLLAAFQATREM 326
            E V K EN LPWVEKYRP  L E+  HE +I+TI+KF+  GKLPHLLF+GPPGTGKT+TI+A A++IY  K + +M+LELNASD+RGI+VVR QI  FASTR IF+SGFKLVILDEADAMT  AQNALRRIIEK++ + RFC++ NY  K+ PAL SRCTRFRF PL    I  RL  V + E V ++ +  ++L+ L+ GDMR+ +N+LQ+C     A  +++E+ VY CVG P  +DI  ++  +L+ +  +A      +K  KGLAL D+L        +L+L    +I LL  ++E+E RL +G NE+ Q  + +   + + E+
Sbjct:    8 ETVEKQENSLPWVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQIY-GKNYRNMILELNASDERGIDVVRDQIKTFASTRQIFSSGFKLVILDEADAMTNAAQNALRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRLAHVIEQESVDLSPEAFQSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVYDCVGSPRPADIRTVLQAVLDGSWESALHTFSYIKQSKGLALADMLTAFAVEFQKLDLQNKTRIALLDGLSEIEWRLSSGGNESIQTSATIGVIKQSMEL 334

[Close]

BLAST of replication factor c subunit 5 vs. SwissProt
Match: gi|166225157|sp|A6US36.1|RFCS_METVS (RecName: Full=Replication factor C small subunit; Short=RFC small subunit; AltName: Full=Clamp loader small subunit)

HSP 1 Score: 256.914 bits (655), Expect = 5.900e-83
Identity = 122/307 (39.74%), Postives = 191/307 (62.21%), Query Frame = 0

Query:   12 PWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTRTIFNSGFKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSMAFAEVNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQQLKALKGLALRDVLAEVHHFVHRLELPQAIKIHLLIRMAEVEHRLLNGANENTQLGSLLA 318
            PWVEKYRP  L E++ H++II  ++ ++    +PHLLF G PG GKT+  L  AK++Y +  +    LELN+SD+RGI+V+R ++ +FA T+ I ++ FK++ LDE+DA+T DAQNALRR +EK++D  RF L  NY SKIIP +QSRC  FRF PL  + ++  LK + + E + +   G +A++ +++GDMRK IN+LQ+ +     +NE  +Y         +I  +    LN     A   + +L    G++  D++ ++   V  LE+ +  K+HL+  + E + R++ GANE  QL +LLA
Sbjct:    4 PWVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYGNT-WKENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEKESINVEKSGMDAIIYVSEGDMRKAINVLQTGAAVSKNINETVIYKVASKARPDEIKKMTELALNGKFVEAREQLYKLMIDWGMSGEDIIIQIFREVPNLEISEKEKVHLVEAIGECDFRIVEGANERIQLSALLA 309

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BLAST of replication factor c subunit 5 vs. nr
Match: gi|1325317348|ref|XP_023340415.1| (replication factor C subunit 5-like [Eurytemora affinis] >gi|1325317350|ref|XP_023340416.1| replication factor C subunit 5-like [Eurytemora affinis])

HSP 1 Score: 527.324 bits (1357), Expect = 0.000e+0
Identity = 242/323 (74.92%), Postives = 284/323 (87.93%), Query Frame = 0

Query:   10 NLPWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTRTIFNSGFKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSMAFAEVNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQQLKALKGLALRDVLAEVHHFVHRLELPQAIKIHLLIRMAEVEHRLLNGANENTQLGSLLAAFQATREMIKDQAD 332
            NLPWVEKYRPNALQELISHEDIISTIR FIS  KLPHLLFYGPPGTGKTSTILACAKE+Y  KEF+SMVLELNASDDRGI +VRGQI+NFASTRT  N G+KL+ILDEAD+MT DAQNALRRI+EK+T+NVRFC+IGNYL KIIPALQSRCTRFRFGPL+  QI+PRL++VC+ E V IT+DG+EAL+ LAQGDMRKVINILQSC+MAF EVNED+VYTCVGHPL SDITNIVNW LN   ++A+ N+ +LK LKGL+L+D+L EVH FVH++ LP +I+IHLLI+++E+E RL+ G +E  QLGS +AAFQ TREM+K + D
Sbjct:    8 NLPWVEKYRPNALQELISHEDIISTIRTFISQEKLPHLLFYGPPGTGKTSTILACAKELYTPKEFSSMVLELNASDDRGIGIVRGQIMNFASTRTFLNKGYKLIILDEADSMTNDAQNALRRIMEKYTENVRFCMIGNYLGKIIPALQSRCTRFRFGPLDSAQIMPRLEYVCKEENVNITSDGKEALIKLAQGDMRKVINILQSCAMAFPEVNEDSVYTCVGHPLPSDITNIVNWSLNLDFSSAFNNILELKTLKGLSLQDILTEVHLFVHKIVLPASIRIHLLIKLSELEQRLMAGTSERIQLGSFVAAFQVTREMVKAEDD 330

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BLAST of replication factor c subunit 5 vs. nr
Match: gi|395514036|ref|XP_003761227.1| (replication factor C subunit 5 [Sarcophilus harrisii])

HSP 1 Score: 500.36 bits (1287), Expect = 6.007e-176
Identity = 229/327 (70.03%), Postives = 275/327 (84.10%), Query Frame = 0

Query:    5 VAKVENLPWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTRTIFNSGFKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSMAFAEVNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQQLKALKGLALRDVLAEVHHFVHRLELPQAIKIHLLIRMAEVEHRLLNGANENTQLGSLLAAFQATREMIKDQA 331
            V K  NLPWVEKYRP  L +LISH+DI+STI+KFIS  +LPHLL YGPPGTGKTSTILACAK++Y+ KEFNSMVLELNASDDRGI++VRG IL+FASTRTIF  GFKLVILDEADAMTQDAQNALRR+IEKFT+N RFCLI NYLSKIIPALQSRCTRFRFGPL P+ ++PRL+ V + EKV I+ DG +AL+TL+ GDMR+ +NILQS +MAF +V E+ VYTC GHPLK+DI NI++WMLN    TAY N+ +LK LKGLAL D+L E+H FVHR++ P A++IHLLI+MA++EHRL  G +E  QL SL+AAFQ TR++I  +A
Sbjct:   17 VTKSRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFNSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIEEEKVDISEDGMKALITLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPPAVRIHLLIKMADIEHRLAVGTSEKIQLSSLIAAFQVTRDLIVAEA 343

[Close]

BLAST of replication factor c subunit 5 vs. nr
Match: gi|635068540|ref|XP_008003063.1| (PREDICTED: replication factor C subunit 5 [Chlorocebus sabaeus])

HSP 1 Score: 499.59 bits (1285), Expect = 8.446e-176
Identity = 228/327 (69.72%), Postives = 275/327 (84.10%), Query Frame = 0

Query:    5 VAKVENLPWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTRTIFNSGFKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSMAFAEVNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQQLKALKGLALRDVLAEVHHFVHRLELPQAIKIHLLIRMAEVEHRLLNGANENTQLGSLLAAFQATREMIKDQA 331
            VAK+ NLPWVEKYRP  L +LISH+DI+STI+KFIS  +LPHLL YGPPGTGKTSTILACAK++Y+ KEF SMVLELNASDDRGI++VRG IL+FASTRTIF  GFKLVILDEADAMTQDAQNALRR+IEKFT+N RFCLI NYLSKIIPALQSRCTRFRFGPL P+ ++PRL+ V + EKV I+ DG +AL+TL+ GDMR+ +NILQS +MAF +V E+ VYTC GHPLKSDI NI++WMLN    TAY N+ +LK LKGLAL D+L E+H FVHR++ P +++IHLL +MA++E+RL  G NE  QL SL+AAFQ TR++I  +A
Sbjct:   14 VAKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA 340

[Close]

BLAST of replication factor c subunit 5 vs. nr
Match: gi|556968986|ref|XP_005993364.1| (PREDICTED: replication factor C subunit 5 [Latimeria chalumnae])

HSP 1 Score: 499.59 bits (1285), Expect = 8.721e-176
Identity = 225/322 (69.88%), Postives = 274/322 (85.09%), Query Frame = 0

Query:   10 NLPWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTRTIFNSGFKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSMAFAEVNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQQLKALKGLALRDVLAEVHHFVHRLELPQAIKIHLLIRMAEVEHRLLNGANENTQLGSLLAAFQATREMIKDQA 331
            NLPWVEKYRP  L +LISH+DI+STIRKFIS  +LPHLLFYGPPGTGKTSTILACAK++Y+ +EFNSMVLELNASDDRGI+VVRG +L+FASTRTIF  GFKLVILDEADAMTQDAQNALRR+IEKFT+N RFCLI NYLSKIIPALQSRCTRFRFGPL P+ ++PRL++V Q EKV +  DG +A++TL+ GDMR+ +NILQS  MA+ +V ED VYTC GHPLKSDI+NI++WMLN    TAY N+ +LK LKGLAL D++ EVH FVHR++ P +++IHLL++MA++E+RL +G NE  QL SL+AAFQ  R+M+  +A
Sbjct:   12 NLPWVEKYRPQTLNDLISHQDILSTIRKFISEDRLPHLLFYGPPGTGKTSTILACAKQLYKDREFNSMVLELNASDDRGIDVVRGPVLSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEYVTQKEKVDMGEDGMKAIVTLSCGDMRRALNILQSTHMAYGKVTEDTVYTCTGHPLKSDISNILDWMLNQDFTTAYNNIMELKTLKGLALHDIMTEVHTFVHRVDFPPSVRIHLLVKMADIEYRLASGTNEKIQLSSLIAAFQLARDMVVAEA 333

[Close]

BLAST of replication factor c subunit 5 vs. nr
Match: gi|822476285|ref|NP_001296126.1| (replication factor C subunit 5 [Equus caballus])

HSP 1 Score: 499.59 bits (1285), Expect = 9.846e-176
Identity = 227/327 (69.42%), Postives = 274/327 (83.79%), Query Frame = 0

Query:    5 VAKVENLPWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTRTIFNSGFKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSMAFAEVNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQQLKALKGLALRDVLAEVHHFVHRLELPQAIKIHLLIRMAEVEHRLLNGANENTQLGSLLAAFQATREMIKDQA 331
             AK+ NLPWVEKYRP  L +LISH+DI+STI+KFIS  +LPHLL YGPPGTGKTSTILACAK++Y+ KEF SMVLELNASDDRGI++VRG IL+FASTRTIF  GFKLVILDEADAMTQDAQNALRR+IEKFT+N RFCLI NYLSKIIPALQSRCTRFRFGPL P+ ++PRL+ V + EKV I+ DG +AL+TL+ GDMR+ +NILQS +MAF +V E+ VYTC GHPLKSDI NI++WMLN    TAY N+ +LK LKGLAL D+L E+H FVHR++ P +++IHLL +MA++E+RL  G NE  QL SL+AAFQ TR++I  +A
Sbjct:   14 TAKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVVEEEKVAISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPTSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVSEA 340

[Close]

BLAST of replication factor c subunit 5 vs. nr
Match: gi|1016597404|ref|XP_007528756.2| (PREDICTED: replication factor C subunit 5 [Erinaceus europaeus])

HSP 1 Score: 499.204 bits (1284), Expect = 1.145e-175
Identity = 227/326 (69.63%), Postives = 273/326 (83.74%), Query Frame = 0

Query:    6 AKVENLPWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTRTIFNSGFKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSMAFAEVNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQQLKALKGLALRDVLAEVHHFVHRLELPQAIKIHLLIRMAEVEHRLLNGANENTQLGSLLAAFQATREMIKDQA 331
             K+ NLPWVEKYRP  L +LISH+DI+STI+KFIS  +LPHLL YGPPGTGKTSTILACAK++Y+ KEF SMVLELNASDDRGI++VRG IL+FASTRTIF  GFKLVILDEADAMTQDAQNALRR+IEKFT+N RFCLI NYLSKIIPALQSRCTRFRF PL P+ ++PRL+ V +AEKV ++ DG +AL+TL+ GDMR+ +NILQS +MAF +V ED VYTC GHPLKSDI NI++WMLN    TAY N+ +LK LKGLAL D+L E+H FVHR++ P +I++HLL +MA++E+RL  G NE  QL SL+AAFQ TR++I  QA
Sbjct:   11 GKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFAPLTPELMVPRLEHVIEAEKVDVSEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEDTVYTCTGHPLKSDIANILDWMLNQDFITAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSIRVHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVSQA 336

[Close]

BLAST of replication factor c subunit 5 vs. nr
Match: gi|1147274820|ref|XP_020019037.1| (replication factor C subunit 5 [Castor canadensis])

HSP 1 Score: 499.59 bits (1285), Expect = 1.174e-175
Identity = 229/327 (70.03%), Postives = 273/327 (83.49%), Query Frame = 0

Query:    5 VAKVENLPWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTRTIFNSGFKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSMAFAEVNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQQLKALKGLALRDVLAEVHHFVHRLELPQAIKIHLLIRMAEVEHRLLNGANENTQLGSLLAAFQATREMIKDQA 331
             AK+ NLPWVEKYRP  L +LISH+DI+STI+KFIS  +LPHLLFYGPPGTGKTSTILACAK++Y+ KEF SMVLELNASDDRGI++VRG IL+FASTRTIF  GFKLVILDEADAMTQDAQNALRR+IEKFT+N RFCLI NYLSKIIPALQSRCTRFRFGPL P  ++PRL+ V   EKV IT DG +AL+TL+ GDMR+ +NILQS +MAF +V E+ VYTC GHPLKSDI NI++WMLN    TAY N+ +LK LKGLAL D+L E+H FVHR++ P +++IHLL +MA++E+RL  G NE  QL SL+AAFQ TR++I  +A
Sbjct:   21 TAKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPDLMVPRLEHVVDEEKVDITEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA 347

[Close]

BLAST of replication factor c subunit 5 vs. nr
Match: gi|958744465|ref|XP_014710205.1| (PREDICTED: replication factor C subunit 5 [Equus asinus])

HSP 1 Score: 499.59 bits (1285), Expect = 1.194e-175
Identity = 227/327 (69.42%), Postives = 274/327 (83.79%), Query Frame = 0

Query:    5 VAKVENLPWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTRTIFNSGFKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSMAFAEVNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQQLKALKGLALRDVLAEVHHFVHRLELPQAIKIHLLIRMAEVEHRLLNGANENTQLGSLLAAFQATREMIKDQA 331
             AK+ NLPWVEKYRP  L +LISH+DI+STI+KFIS  +LPHLL YGPPGTGKTSTILACAK++Y+ KEF SMVLELNASDDRGI++VRG IL+FASTRTIF  GFKLVILDEADAMTQDAQNALRR+IEKFT+N RFCLI NYLSKIIPALQSRCTRFRFGPL P+ ++PRL+ V + EKV I+ DG +AL+TL+ GDMR+ +NILQS +MAF +V E+ VYTC GHPLKSDI NI++WMLN    TAY N+ +LK LKGLAL D+L E+H FVHR++ P +++IHLL +MA++E+RL  G NE  QL SL+AAFQ TR++I  +A
Sbjct:   16 TAKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVVEEEKVAISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPTSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVTEA 342

[Close]

BLAST of replication factor c subunit 5 vs. nr
Match: gi|731507177|ref|XP_010597241.1| (replication factor C subunit 5 isoform X1 [Loxodonta africana])

HSP 1 Score: 499.204 bits (1284), Expect = 1.239e-175
Identity = 229/326 (70.25%), Postives = 273/326 (83.74%), Query Frame = 0

Query:    6 AKVENLPWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTRTIFNSGFKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSMAFAEVNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQQLKALKGLALRDVLAEVHHFVHRLELPQAIKIHLLIRMAEVEHRLLNGANENTQLGSLLAAFQATREMIKDQA 331
            AK  NLPWVEKYRP  L +LISH+DI+STI+KFIS  +LPHLL YGPPGTGKTSTILACAK++Y+ KEF SMVLELNASDDRGI++VRG IL+FASTRTIF  GFKLVILDEADAMTQDAQNALRR+IEKFT+N RFCLI NYLSKIIPALQSRCTRFRFGPL P+ ++PRL+ V + EKV I+ DG +AL+TL+ GDMR+ +NILQS +MAF +V E+ VYTC GHPLKSDI NI+ WMLN    TAY N+ +LK LKGLAL D+L E+H FVHR++ P +++IHLLI+MA++E+RL  G NE  QL SL+AAFQ TR++I  QA
Sbjct:   15 AKSRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILEWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLIKMADIEYRLSLGTNEKIQLSSLIAAFQVTRDLIVAQA 340

[Close]

BLAST of replication factor c subunit 5 vs. nr
Match: gi|1160116130|ref|XP_020384279.1| (replication factor C subunit 5 isoform X1 [Rhincodon typus])

HSP 1 Score: 498.819 bits (1283), Expect = 1.366e-175
Identity = 226/327 (69.11%), Postives = 277/327 (84.71%), Query Frame = 0

Query:    6 AKVENLPWVEKYRPNALQELISHEDIISTIRKFISAGKLPHLLFYGPPGTGKTSTILACAKEIYQSKEFNSMVLELNASDDRGINVVRGQILNFASTRTIFNSGFKLVILDEADAMTQDAQNALRRIIEKFTDNVRFCLIGNYLSKIIPALQSRCTRFRFGPLNPQQILPRLKFVCQAEKVPITADGEEALMTLAQGDMRKVINILQSCSMAFAEVNEDNVYTCVGHPLKSDITNIVNWMLNDALATAYTNVQQLKALKGLALRDVLAEVHHFVHRLELPQAIKIHLLIRMAEVEHRLLNGANENTQLGSLLAAFQATREMIKDQAD 332
            AK  NLPWVEKYRP  L +LISH+DI++TI++FIS  + PHLLFYGPPGTGKTSTILACAK +Y+ KE NSMVLELNASDDRGI++VRG ILNFASTRTIF  GFKLVILDEADAMTQDAQNALRR+IEKFT+N RFCLI NYLSKIIPALQSRCTRFRFGPL+P+Q++PRL+FV + E V IT DG +A++TL+ GDMR+ +NILQS +MA+ +V+E+ VYTC GHPLKSDI NI++WMLN    TAY N+ +LK LKGLAL D+L E+H FVHR++LP +++ HLLI+MA++E+RL +G NE  QL SL+AAFQ  R+M+  +A+
Sbjct:    7 AKSRNLPWVEKYRPQTLDDLISHQDILNTIQRFISEDRFPHLLFYGPPGTGKTSTILACAKRLYKGKELNSMVLELNASDDRGIDIVRGPILNFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPEQMIPRLEFVIKEENVDITQDGLKAIVTLSNGDMRRSLNILQSTNMAYDKVSEETVYTCTGHPLKSDIANILDWMLNKDFTTAYRNIMELKTLKGLALHDILTEIHTFVHRVDLPPSVRTHLLIKMADIEYRLASGTNEKIQLSSLIAAFQVARDMVVAEAE 333

The following BLAST results are available for this feature:

BLAST of replication factor c subunit 5 vs. L. salmonis genes
BLAST of replication factor c subunit 5 vs. SwissProt
BLAST of replication factor c subunit 5 vs. nr

BLAST of replication factor c subunit 5 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 7


Match Name	E-value	Identity	Description
EMLSAG00000012858	2.046e-162	65.24	supercontig:LSalAtl2s:LSalAtl2s97:2549575:2550603:...	[more]
EMLSAG00000008613	4.594e-67	40.12	supercontig:LSalAtl2s:LSalAtl2s530:662345:663412:-...	[more]
EMLSAG00000008581	4.576e-63	48.11	supercontig:LSalAtl2s:LSalAtl2s52:19609:187927:1 g...	[more]
EMLSAG00000002792	4.366e-34	32.21	supercontig:LSalAtl2s:LSalAtl2s1612:33818:37950:-1...	[more]
EMLSAG00000006217	4.869e-27	31.06	supercontig:LSalAtl2s:LSalAtl2s33:183428:185371:1 ...	[more]
EMLSAG00000012251	5.371e-9	25.73	supercontig:LSalAtl2s:LSalAtl2s893:96950:102673:1 ...	[more]
EMLSAG00000013000	5.263e-8	28.13	supercontig:LSalAtl2s:LSalAtl2s98:797939:799663:1 ...	[more]

BLAST of replication factor c subunit 5 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|728777\|sp\|P40937.1\|RFC5_HUMAN	4.434e-176	68.71	RecName: Full=Replication factor C subunit 5; AltN...	[more]
gi\|30913281\|sp\|Q9D0F6.1\|RFC5_MOUSE	1.134e-175	69.02	RecName: Full=Replication factor C subunit 5; AltN...	[more]
gi\|13431787\|sp\|O14003.2\|RFC3_SCHPO	7.784e-121	53.05	RecName: Full=Replication factor C subunit 3; Shor...	[more]
gi\|55584161\|sp\|P34429.3\|RFC5_CAEEL	1.252e-119	52.72	RecName: Full=Probable replication factor C subuni...	[more]
gi\|75169932\|sp\|Q9CAQ8.1\|RFC5_ARATH	1.340e-116	50.92	RecName: Full=Replication factor C subunit 5; Shor...	[more]
gi\|585844\|sp\|P38629.1\|RFC3_YEAST	2.953e-115	50.15	RecName: Full=Replication factor C subunit 3; Shor...	[more]
gi\|74855117\|sp\|Q54ST4.1\|RFC5_DICDI	2.886e-113	51.39	RecName: Full=Probable replication factor C subuni...	[more]
gi\|75132556\|sp\|Q6YZ54.1\|RFC3_ORYSJ	3.129e-113	50.00	RecName: Full=Replication factor C subunit 3; Shor...	[more]
gi\|30913228\|sp\|O74111.1\|RFC3_BLAAD	5.317e-111	50.00	RecName: Full=Replication factor C subunit 3; Shor...	[more]
gi\|166225157\|sp\|A6US36.1\|RFCS_METVS	5.900e-83	39.74	RecName: Full=Replication factor C small subunit; ...	[more]

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BLAST of replication factor c subunit 5 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1325317348\|ref\|XP_023340415.1\|	0.000e+0	74.92	replication factor C subunit 5-like [Eurytemora af...	[more]
gi\|395514036\|ref\|XP_003761227.1\|	6.007e-176	70.03	replication factor C subunit 5 [Sarcophilus harris...	[more]
gi\|635068540\|ref\|XP_008003063.1\|	8.446e-176	69.72	PREDICTED: replication factor C subunit 5 [Chloroc...	[more]
gi\|556968986\|ref\|XP_005993364.1\|	8.721e-176	69.88	PREDICTED: replication factor C subunit 5 [Latimer...	[more]
gi\|822476285\|ref\|NP_001296126.1\|	9.846e-176	69.42	replication factor C subunit 5 [Equus caballus]	[more]
gi\|1016597404\|ref\|XP_007528756.2\|	1.145e-175	69.63	PREDICTED: replication factor C subunit 5 [Erinace...	[more]
gi\|1147274820\|ref\|XP_020019037.1\|	1.174e-175	70.03	replication factor C subunit 5 [Castor canadensis]	[more]
gi\|958744465\|ref\|XP_014710205.1\|	1.194e-175	69.42	PREDICTED: replication factor C subunit 5 [Equus a...	[more]
gi\|731507177\|ref\|XP_010597241.1\|	1.239e-175	70.25	replication factor C subunit 5 isoform X1 [Loxodon...	[more]
gi\|1160116130\|ref\|XP_020384279.1\|	1.366e-175	69.11	replication factor C subunit 5 isoform X1 [Rhincod...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold1455_size40601	supercontig	scaffold1455_size40601:14775..15773 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	P:DNA replication

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold1455_size40601-processed-gene-0.3-mRNA-1	snap_masked-scaffold1455_size40601-processed-gene-0.3-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold1455_size40601:14775..15773+

gene from alignment at scaffold1455_size40601:14775..15773+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold1455_size40601-processed-gene-0.3 ID=snap_masked-scaffold1455_size40601-processed-gene-0.3|Name=replication factor c subunit 5|organism=Tigriopus kingsejongensis|type=gene|length=999bp|location=Sequence derived from alignment at scaffold1455_size40601:14775..15773+ (Tigriopus kingsejongensis)
ATGCCGGAGTTGGTGGCCAAGGTGGAGAATCTGCCGTGGGTGGAAAAGTA
TCGGCCGAATGCCCTCCAGGAGCTGATCTCGCACGAGGACATCATCTCGA
CCATCCGGAAGTTCATTTCGGCCGGCAAGTTGCCGCATCTTCTCTTCTAC
GGCCCACCCGGCACGGGCAAGACCTCGACCATTCTGGCCTGCGCCAAGGA
GATCTACCAGAGCAAGGAGTTCAACTCCATGGTCCTGGAGCTCAATGCCA
GTGACGACCGCGGTATCAACGTGGTTCGCGGGCAGATCCTCAATTTCGCC
TCCACCCGCACCATCTTCAACTCGGGCTTCAAGTTGGTCATCCTGGACGA
GGCTGACGCCATGACGCAAGACGCCCAGAACGCGCTCCGGCGGATCATTG
AGAAGTTCACGGACAACGTGAGGTTTTGCCTCATCGGCAACTACCTCTCC
AAGATCATCCCCGCCCTCCAGAGCCGCTGCACCCGTTTCCGCTTTGGACC
GCTCAACCCGCAGCAAATTCTGCCGCGGCTCAAGTTTGTGTGCCAGGCGG
AAAAAGTGCCCATCACGGCCGACGGCGAGGAGGCCCTCATGACCCTGGCC
CAGGGCGACATGCGCAAGGTGATCAACATCCTGCAGAGCTGCTCCATGGC
CTTCGCGGAGGTGAACGAGGACAATGTCTACACGTGTGTGGGCCATCCAC
TCAAGTCGGACATCACTAACATCGTCAACTGGATGCTCAACGACGCCCTG
GCCACGGCCTACACCAATGTGCAGCAGCTCAAGGCACTCAAGGGCCTGGC
TCTGCGCGACGTCCTGGCCGAGGTGCATCACTTTGTCCACCGACTCGAAT
TGCCTCAGGCCATCAAGATCCATCTCCTGATCCGGATGGCCGAGGTGGAG
CACCGCCTTTTGAACGGAGCCAACGAGAACACTCAGCTGGGTTCCCTCCT
GGCCGCCTTTCAAGCCACCCGGGAGATGATCAAGGACCAAGCGGACTAG

Synonyms

The feature 'replication factor c subunit 5' has the following synonyms


Synonym
Tk02964

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