histidine kinase, snap_masked-scaffold155_size301336-processed-gene-1.3 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of histidine kinase vs. L. salmonis genes
Match: EMLSAG00000000547 (supercontig:LSalAtl2s:LSalAtl2s108:230431:251826:1 gene:EMLSAG00000000547 transcript:EMLSAT00000000547 description:"snap_masked-LSalAtl2s108-processed-gene-3.3") HSP 1 Score: 88.1965 bits (217), Expect = 4.710e-23 Identity = 62/133 (46.62%), Postives = 81/133 (60.90%), Query Frame = 0
Query: 30 RGRMALLVTLFLVLVNIFNAITTNSPKADGLNALQV--------------EYSVILLQLKLHSIQKCANDI-----NGVSTSNGPPSI--------------KVLRKNQMVARFDLVCLVFFPLLFVLFTRVY 129
+GRMALLVTLFLVLVNIFNAITTNSPKADGLNALQ EY++ILLQ+K+ +IQ + D + NG P+I K+ +K Q++AR D+ CL+ FP+LF++F +Y
Sbjct: 66 QGRMALLVTLFLVLVNIFNAITTNSPKADGLNALQAWVITCIFFVFGALSEYAIILLQVKIRNIQGHSGDYPSCIPAALPIPNGNPAIQTHVQNRLRIAAINKLTKKEQLMARLDITCLIVFPILFLVFVLIY 198
BLAST of histidine kinase vs. L. salmonis genes
Match: EMLSAG00000003185 (supercontig:LSalAtl2s:LSalAtl2s176:68925:134641:-1 gene:EMLSAG00000003185 transcript:EMLSAT00000003185 description:"maker-LSalAtl2s176-augustus-gene-1.7") HSP 1 Score: 59.3066 bits (142), Expect = 1.046e-11 Identity = 26/34 (76.47%), Postives = 33/34 (97.06%), Query Frame = 0
Query: 31 GRMALLVTLFLVLVNIFNAITTNSPKADGLNALQ 64
GRMALL+TLFLVLVNIFN++TTN+PKA+GL A++
Sbjct: 282 GRMALLITLFLVLVNIFNSVTTNTPKAEGLTAIE 315
BLAST of histidine kinase vs. L. salmonis genes
Match: EMLSAG00000003313 (supercontig:LSalAtl2s:LSalAtl2s181:399664:401012:-1 gene:EMLSAG00000003313 transcript:EMLSAT00000003313 description:"maker-LSalAtl2s181-augustus-gene-4.10") HSP 1 Score: 58.151 bits (139), Expect = 3.371e-11 Identity = 50/141 (35.46%), Postives = 67/141 (47.52%), Query Frame = 0
Query: 31 GRMALLVTLFLVLVNIFNAITTNSPKADGLNALQV--------------EYSV-----------------ILL--------QLKLHS--IQKCANDINGV-STSNGPPSIKVLRKNQMVARFDLVCLVFFPLLFVLFTRVY 129
GRM LLVT+FLVL+NIFN I TNSPKADGL A++ EY+V I+L Q ++H+ ++K N + S SN P +K A DL+ L FP+LF++F Y
Sbjct: 278 GRMTLLVTIFLVLINIFNTIQTNSPKADGLTAIEAWVIACIIFVFGALGEYTVILLKIKIKKIYPKKRKVIVLSQIPNTKNQQQVHNKKVKKAIKLQNSLWSNSNVFP-----KKIDKYAHTDLIFLAVFPILFLIFNLFY 413
BLAST of histidine kinase vs. L. salmonis genes
Match: EMLSAG00000008455 (supercontig:LSalAtl2s:LSalAtl2s519:173869:181393:1 gene:EMLSAG00000008455 transcript:EMLSAT00000008455 description:"snap_masked-LSalAtl2s519-processed-gene-1.11") HSP 1 Score: 56.225 bits (134), Expect = 1.469e-10 Identity = 42/127 (33.07%), Postives = 61/127 (48.03%), Query Frame = 0
Query: 31 GRMALLVTLFLVLVNIFNAITTNSPKADGLNALQ--------------VEYSVI---LLQLKLHSIQKCANDINGVST-----------SNGPPSIKVLRKNQMVARFDLVCLVFFPLLFVLFTRVY 129
GRMALLVTLFLVL+NIFN IT SP +G+ A+ + Y+ I LL K + + K ND+ V + I+ L + +A+ D + L FP +F++F +Y
Sbjct: 213 GRMALLVTLFLVLINIFNTITNVSPNVEGMXAISSWMIACMFFVFGALLGYAAILYVLLMKKKNCLIKKRNDLAFVHAPSCYFYKVSEQTKRKEEIEELDHTEKLAKVDSILLYVFPFMFLVFNIIY 339
BLAST of histidine kinase vs. L. salmonis genes
Match: EMLSAG00000011211 (supercontig:LSalAtl2s:LSalAtl2s765:133774:155316:1 gene:EMLSAG00000011211 transcript:EMLSAT00000011211 description:"maker-LSalAtl2s765-snap-gene-1.16") HSP 1 Score: 50.447 bits (119), Expect = 1.379e-8 Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 0
Query: 31 GRMALLVTLFLVLVNIFNAITTNSPKADGLNALQ--------------VEYSVILLQLKLHSIQKCAND 85
GRMALLVTLFLVL+NIFN++ +P + LNA+ +EY+VILL LK K + D
Sbjct: 216 GRMALLVTLFLVLINIFNSVRERAPISSKLNAIDLYLVVCIFLVFGALMEYAVILLLLKQRRKPKRSID 284
BLAST of histidine kinase vs. L. salmonis genes
Match: EMLSAG00000001113 (supercontig:LSalAtl2s:LSalAtl2s1186:160345:169896:1 gene:EMLSAG00000001113 transcript:EMLSAT00000001113 description:"maker-LSalAtl2s1186-snap-gene-1.38") HSP 1 Score: 48.521 bits (114), Expect = 7.768e-8 Identity = 45/123 (36.59%), Postives = 63/123 (51.22%), Query Frame = 0
Query: 31 GRMALLVTLFLVLVNIFNAITTNSPKADGLNALQ--------------VEYSVILLQLKLHSIQKCANDINGVSTSN---------GPPSIKVLRK-NQMVARFDLVCLVFFPLLFVLFTRVY 129
GRM LLV LFLVLVNIFN +TTN+PKA+GL A++ +EY+ IL + + + + +I V N PPS L+ + R D L+ FP+LF +F +Y
Sbjct: 436 GRMGLLVMLFLVLVNIFNTVTTNTPKAEGLTAIEAWMLACILFVFGALIEYAAILFKKQRYVSAQNKLNIRIVWKDNLKYEVYEQRPPPSTLSLQHLAEEYWRIDKFFLISFPILFFIFNIIY 558
BLAST of histidine kinase vs. nr
Match: gi|1325259122|ref|XP_023327258.1| (glycine receptor subunit alpha-2-like [Eurytemora affinis]) HSP 1 Score: 65.4698 bits (158), Expect = 8.627e-10 Identity = 50/137 (36.50%), Postives = 66/137 (48.18%), Query Frame = 0
Query: 31 GRMALLVTLFLVLVNIFNAITTNSPKADGLNALQ--------------VEYSVILLQLKLH-------SIQKC--------------ANDINGVSTSNGPPSIKVLRKNQM---VARFDLVCLVFFPLLFVLFTRVY 129
GRM LL+T+FLVLVNIFN ITTN PKA+GL A++ VEY+ ILL++K+ ++ +C N NG S + + + AR DL LV FP LF+LF Y
Sbjct: 273 GRMTLLITVFLVLVNIFNTITTNIPKAEGLTAIEAWVIVCVLFVFGALVEYAGILLKMKVQLSMKPKKNMTRCESVDSQIILHPLAPENGTNGDEKSGKKKKKRPKTRAEEKLGTARLDLTFLVIFPCLFLLFNIAY 409
BLAST of histidine kinase vs. nr
Match: gi|1325268174|ref|XP_023344754.1| (glycine receptor subunit alpha-1-like [Eurytemora affinis]) HSP 1 Score: 63.1586 bits (152), Expect = 4.999e-9 Identity = 41/91 (45.05%), Postives = 51/91 (56.04%), Query Frame = 0
Query: 31 GRMALLVTLFLVLVNIFNAITTNSPKADGLNALQ--------------VEYSVILLQ------------LKLHSIQKCANDIN-GVSTSNG 94
GRMALL+TLFLVLVNIFN +T+N+PKA+GL A++ VEY+VIL Q LK HS C + VS+ NG
Sbjct: 283 GRMALLITLFLVLVNIFNTVTSNTPKAEGLTAIEAWMLSCILFVFGALVEYAVILFQSQRGKPNPVQNHLKRHSRIICRENFKYEVSSENG 373
BLAST of histidine kinase vs. nr
Match: gi|1325277633|ref|XP_023323455.1| (glutamate-gated chloride channel subunit beta-like [Eurytemora affinis] >gi|1325277635|ref|XP_023323456.1| glutamate-gated chloride channel subunit beta-like [Eurytemora affinis]) HSP 1 Score: 59.3066 bits (142), Expect = 9.289e-8 Identity = 40/124 (32.26%), Postives = 62/124 (50.00%), Query Frame = 0
Query: 16 STFGNLVFPILETNRGRMALLVTLFLVLVNIFNAITTNSPKADGLNALQVEYSVILL----------QLKLHSIQKCANDINGVSTSNGPPSIKVLRKNQMVARFDLVCLVFFPLLFVLFTRVY 129
S G L+ P E GRMA+L+TLFLVL+NIFN +T+NSP +G+ A+ V + L + C + ++ +RK ++ D V LV FP++F++F +Y
Sbjct: 273 SWVGFLIPP--EVVPGRMAMLITLFLVLINIFNIVTSNSPNVEGMTAIAAWMLVCIFFVFGALVGYAYLLWKKKKSCLKRKRARKQTEEEGKLRTIRKEDYRSKVDDVFLVVFPIMFLVFNLIY 394
BLAST of histidine kinase vs. nr
Match: gi|1325331792|ref|XP_023347755.1| (glycine receptor subunit alpha-3-like [Eurytemora affinis]) HSP 1 Score: 58.9214 bits (141), Expect = 1.668e-7 Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 0
Query: 27 ETNRGRMALLVTLFLVLVNIFNAITTNSPKADGLNALQ--------------VEYSVILLQLKLHS 78
E+ GRM +LVT+FLVLVNIFN+IT N PKA+GL A++ +EY+VIL Q K+ +
Sbjct: 222 ESVPGRMTILVTVFLVLVNIFNSITNNIPKAEGLTAIEGFIIVCIVFVFGALIEYAVILFQSKIKT 287 The following BLAST results are available for this feature:
BLAST of histidine kinase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 6
BLAST of histidine kinase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of histidine kinase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 4
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold155_size301336:117888..137945- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold155_size301336-processed-gene-1.3 ID=snap_masked-scaffold155_size301336-processed-gene-1.3|Name=histidine kinase|organism=Tigriopus kingsejongensis|type=gene|length=20058bp|location=Sequence derived from alignment at scaffold155_size301336:117888..137945- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'histidine kinase' has the following synonyms
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