dna primase, snap_masked-scaffold181_size278858-processed-gene-1.22 (gene) Tigriopus kingsejongensis

Overview
Namedna primase
Unique Namesnap_masked-scaffold181_size278858-processed-gene-1.22
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of dna primase vs. L. salmonis genes
Match: EMLSAG00000006432 (supercontig:LSalAtl2s:LSalAtl2s351:505906:522411:1 gene:EMLSAG00000006432 transcript:EMLSAT00000006432 description:"maker-LSalAtl2s351-augustus-gene-5.15")

HSP 1 Score: 46.9802 bits (110), Expect = 1.221e-7
Identity = 43/92 (46.74%), Postives = 49/92 (53.26%), Query Frame = 0 
Query:    4 LFQRELESPTPKRQRLSPPTLEMLDHLHQ---HCVSPPIIVRRGNRAAFWHTPQERCHTPSHGRGNGPRRTPPNNPTRRSPPQLRRSIRQRE 92
               RELESPTPKRQR S  + +MLD L Q       PP   RR N +  WH    RC TP     +  RR+P     RRSP QLRRS R R+
Sbjct:  131 FLYRELESPTPKRQRFS--SQDMLDQLVQCSTPPPPPPPTTRRRNTSQRWHQEPSRCITPQR-NASSLRRSP--QQARRSPQQLRRSTRYRQ 217
The following BLAST results are available for this feature:
BLAST of dna primase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000064321.221e-746.74supercontig:LSalAtl2s:LSalAtl2s351:505906:522411:1... [more]
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BLAST of dna primase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of dna primase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold181_size278858supercontigscaffold181_size278858:182255..183929 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold181_size278858-processed-gene-1.22-mRNA-1snap_masked-scaffold181_size278858-processed-gene-1.22-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold181_size278858:182255..183929-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold181_size278858-processed-gene-1.22 ID=snap_masked-scaffold181_size278858-processed-gene-1.22|Name=dna primase|organism=Tigriopus kingsejongensis|type=gene|length=1675bp|location=Sequence derived from alignment at scaffold181_size278858:182255..183929- (Tigriopus kingsejongensis)
ATGAACTCTCTATTCCAGCGCGAACTGGAGTCGCCCACGCCCAAACGCCA
GAGACTCTCTCCGCCCACCCTGGAGATGTTGGACCATCTCCACCAGCATT
GCGTGTCTCCGCCCATCATCGTGAGGCGTGGCAATCGTGCCGCCTTCTGG
CACACGCCCCAGGAACGCTGCCACACGCCCAGTCACGGGCGGGGCAACGG
GCCCCGCAGAACGCCCCCCAACAATCCCACGCGGAGGAGTCCGCCCCAAC
TGAGGAGGAGCATCAGACAGCGCGAGCGGAGTGGGTGTGACCGTGAAGTA
AGTGTGAGACTATATCATCTACGCTATAGTTGTTGGGGTAGTTTTGAATT
GTGGATGACTGGGGAGAACGAGGGCTAGGAGTCGTCCTCCCTCTCGTCGA
CTTGATTAAATAACTTCCATATACATATGTCAATGGAAAGTTAGCTAAAG
TAGACTTCTTGGCTCATCAAGAGGTTCCGAGAACCTTTGTGCTCCCGGTC
CCCGTACCCTCATGCTCTATGGGGGCCAAATTGCGGTGCCGAGTTTGATC
GCCAATTTCCGTGCAGGAGAGAAAGAAATCCTCCACAGTTGAAGCAGACT
TTGGATTTTCGAGAGCTTCACATTTCACCCACGAACAGGATTTGTGCCCC
ACTACGGAAAGTTTGCTAGGTTCGAATCAAGTGGGAAATCTTCTTGGTGT
TTCCCTCACCCTCGTGCTCGGAAAGTTCCTTTCCCCGAATGGCTTTCACC
CTCTCAAAACCCGGGAAAGTCCCTGGCTCAAACCTCTTGAAGGGTTGAAA
GAAGCCCTCCAACTATCCCCTTGGTGAGGGGACCGACAACTTTGGGACCA
GGGTTGCCGTAGGCACACCCGTCCAATGCTCAGCAACTGGGTCCATGTTC
CATCCCTGATCTCAAATATGGGAACAGATGGGGGCTTGGCTCGAAGAAGA
AGGGGTGAGTTGATCCTTGATGAAAAAGGAAGCCTTGGATCGGGTTAGGC
CAAACTTGAAGTCTGATCTTTGGCCAGATGGTTAAGAAATACACTGTAGA
GTTTGCCCGGGGGGGCAAGAGAAATCCAATGCCTTGGCATCCCTGCTCGC
TCTCTTGGCAAGCTTGTTACCGATCCCGTTTTCTTCTTTGGGGAGGTTTC
CAATTCGTTCCAAATGTTGTTATTGCTCAAGCATGAGCCCCTTGAGTCTG
GCAGATCTTGCCCACGGATACTCTGCTTTGTTCTCTGTAGTTCTTATTTC
CGACACTCAGTAGGTACAGTATACGCTCTTGGGGCTAAACTTGGAGATAT
ACTCGACGTTATATTTCCGTCGAGATGTACATATTCAAAGTGGTGCTGAA
TAATTAAGCAACTGCTACACCTTTGTCTCTCGCTAAGCATCCTGGATCCT
TGGTTGACTGAGCACAAATTTTTTACCTCTCACGCGCGCAACCTCGAATC
CCGAGCCTCTTCGCTCGCTGGCAACGTGAAACAAAGCCAGCGTGAAGCTT
TTGTCTCGTTCTACTCCCCTCACAGCCAGAAGAGCTAATGCACTACTCTT
CGAACATATTATATGCAGCATTCCTGGTTTATTCCCTATGATTGAGAAAG
CCGTTTAGCTCCGTTCGTGATTGAATTTGAGGGACCTACAGAGCTTTCCC
CTAATTTTAGCTCTACAAACATTGA
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Synonyms
The feature 'dna primase' has the following synonyms
Synonym
Tk08517
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