cytidine deaminase, snap_masked-scaffold1_size3401120-processed-gene-14.18 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of cytidine deaminase vs. L. salmonis genes
Match: EMLSAG00000001343 (supercontig:LSalAtl2s:LSalAtl2s1228:10227:15910:1 gene:EMLSAG00000001343 transcript:EMLSAT00000001343 description:"maker-LSalAtl2s1228-augustus-gene-0.11") HSP 1 Score: 51.6026 bits (122), Expect = 1.734e-8 Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 0 Query: 10 EELVEAAKAVRLKAYAPYSQFLVGAALLADDGAIYSGCNVENAAY 54 +EL + +R +AY PYS+F VGAAL D +I +GCNVENA+Y Sbjct: 18 KELCLKSMEMRSEAYCPYSKFSVGAALRCADESIVAGCNVENASY 62
BLAST of cytidine deaminase vs. SwissProt
Match: gi|22256726|sp|Q9S3M0.1|CDD_SPOPS (RecName: Full=Cytidine deaminase; Short=CDA; AltName: Full=Cytidine aminohydrolase) HSP 1 Score: 64.6994 bits (156), Expect = 9.306e-12 Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 0 Query: 10 EELVEAAKAVRLKAYAPYSQFLVGAALLADDGAIYSGCNVENAAY 54 E+L+ +K R +AY PYS+F VGAALLA+DG IY GCN+EN+AY Sbjct: 4 EKLIAESKKAREQAYVPYSKFPVGAALLAEDGTIYHGCNIENSAY 48
BLAST of cytidine deaminase vs. SwissProt
Match: gi|116041|sp|P19079.1|CDD_BACSU (RecName: Full=Cytidine deaminase; Short=CDA; AltName: Full=Cytidine aminohydrolase) HSP 1 Score: 63.5438 bits (153), Expect = 2.198e-11 Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 0 Query: 9 REELVEAAKAVRLKAYAPYSQFLVGAALLADDGAIYSGCNVENAAY 54 R+EL+ A R AYAPYS+F VGAALL DG +Y GCN+ENAAY Sbjct: 3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAY 48
BLAST of cytidine deaminase vs. SwissProt
Match: gi|62296704|sp|P56389.2|CDD_MOUSE (RecName: Full=Cytidine deaminase; AltName: Full=Cytidine aminohydrolase) HSP 1 Score: 60.4622 bits (145), Expect = 3.464e-10 Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 0 Query: 4 VTVDQREELVEAAKAVRLKAYAPYSQFLVGAALLADDGAIYSGCNVENAAYP 55 V + + L+ +++ + AY PYS+F VGAALL DG I+SGCN+ENA YP Sbjct: 10 VEPEHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYP 61
BLAST of cytidine deaminase vs. SwissProt
Match: gi|1705718|sp|P32320.2|CDD_HUMAN (RecName: Full=Cytidine deaminase; AltName: Full=Cytidine aminohydrolase) HSP 1 Score: 58.151 bits (139), Expect = 2.107e-9 Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 0 Query: 10 EELVEAAKAVRLKAYAPYSQFLVGAALLADDGAIYSGCNVENAAYP 55 ++L+ ++ + AY PYS F VGAALL +G I+ GCN+ENA YP Sbjct: 16 QQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYP 61
BLAST of cytidine deaminase vs. SwissProt
Match: gi|22256725|sp|Q9KD53.1|CDD_BACHD (RecName: Full=Cytidine deaminase; Short=CDA; AltName: Full=Cytidine aminohydrolase) HSP 1 Score: 51.2174 bits (121), Expect = 5.322e-7 Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 0 Query: 9 REELVEAAKAVRLKAYAPYSQFLVGAALLADDGAIYSGCNVENAAY 54 R+ L++ A R AY PYS+F VGAALL DG++ G N+ENA+Y Sbjct: 3 RQMLIKEAIQAREGAYVPYSRFQVGAALLMKDGSVIRGANIENASY 48
BLAST of cytidine deaminase vs. nr
Match: gi|806811949|ref|WP_046170972.1| (cytidine deaminase [Devosia psychrophila] >gi|806706754|gb|KKC33071.1| cytidine deaminase [Devosia psychrophila] >gi|1097868621|emb|SFC82875.1| cytidine deaminase [Devosia psychrophila]) HSP 1 Score: 79.7221 bits (195), Expect = 7.610e-15 Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 0 Query: 1 MSDVTVDQREELVEAAKAVRLKAYAPYSQFLVGAALLADDGAIYSGCNVENAAYPEAPLAQAGS 64 MS+ +D E L +AA+A+R KAYAPYS+F VGAA+LADDG IYSGCN+ENAAYP A+A + Sbjct: 1 MSNTPID--EALFKAAEAIRAKAYAPYSRFHVGAAILADDGKIYSGCNIENAAYPVGNCAEASA 62
BLAST of cytidine deaminase vs. nr
Match: gi|805453462|ref|WP_046107195.1| (cytidine deaminase [Devosia geojensis] >gi|803469492|gb|KKB13154.1| cytidine deaminase [Devosia geojensis]) HSP 1 Score: 79.337 bits (194), Expect = 9.943e-15 Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 0 Query: 1 MSDVTVDQREELVEAAKAVRLKAYAPYSQFLVGAALLADDGAIYSGCNVENAAYPEAPLAQA 62 M + +D+ L EAA+A+R KAYAPYS F VGAA+LADDG IYSGCNVENAAYP+ A+A Sbjct: 1 MPETPIDK--ALFEAAEAIRAKAYAPYSGFKVGAAILADDGRIYSGCNVENAAYPQGNCAEA 60
BLAST of cytidine deaminase vs. nr
Match: gi|748161451|ref|WP_039735169.1| (MULTISPECIES: cytidine deaminase [Komagataeibacter] >gi|775249250|dbj|GAN98282.1| cytidine deaminase [Komagataeibacter xylinus NBRC 13693] >gi|775284135|dbj|GAN88135.1| cytidine deaminase [Komagataeibacter intermedius TF2] >gi|930248992|gb|KPH87061.1| cytidine deaminase [Komagataeibacter intermedius AF2]) HSP 1 Score: 79.337 bits (194), Expect = 1.187e-14 Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 0 Query: 10 EELVEAAKAVRLKAYAPYSQFLVGAALLADDGAIYSGCNVENAAYPEAPLAQAGS 64 + L++AA +RL+AYAPYS+FLVGAA+ DG IYSGCNVENAAYPEA A+AG+ Sbjct: 4 DPLIQAAVDIRLRAYAPYSRFLVGAAVETTDGQIYSGCNVENAAYPEATCAEAGA 58
BLAST of cytidine deaminase vs. nr
Match: gi|498200403|ref|WP_010514559.1| (cytidine deaminase [Komagataeibacter oboediens]) HSP 1 Score: 78.9518 bits (193), Expect = 1.275e-14 Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 0 Query: 10 EELVEAAKAVRLKAYAPYSQFLVGAALLADDGAIYSGCNVENAAYPEAPLAQAGS 64 + L++AA +RL+AYAPYS+FLVGAA+ DG IYSGCNVENAAYPEA A+AG+ Sbjct: 4 DPLIQAAVDIRLRAYAPYSRFLVGAAVETTDGQIYSGCNVENAAYPEATCAEAGA 58
BLAST of cytidine deaminase vs. nr
Match: gi|947571833|ref|WP_056235328.1| (cytidine deaminase [Devosia sp. Root635] >gi|945989259|gb|KRA42266.1| cytidine deaminase [Devosia sp. Root635]) HSP 1 Score: 78.9518 bits (193), Expect = 1.861e-14 Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 0 Query: 1 MSDVTVDQREELVEAAKAVRLKAYAPYSQFLVGAALLADDGAIYSGCNVENAAYP 55 MS DQ L +AA+AVR KAYAPYS+F VGAA+LADDG IYSGCN+ENAAYP Sbjct: 1 MSKTPTDQ--ALFKAAEAVRAKAYAPYSRFSVGAAILADDGKIYSGCNIENAAYP 53
BLAST of cytidine deaminase vs. nr
Match: gi|947595339|ref|WP_056258634.1| (cytidine deaminase [Devosia sp. Root436] >gi|945680647|gb|KQX35153.1| cytidine deaminase [Devosia sp. Root436]) HSP 1 Score: 78.1814 bits (191), Expect = 3.110e-14 Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 0 Query: 1 MSDVTVDQREELVEAAKAVRLKAYAPYSQFLVGAALLADDGAIYSGCNVENAAYP 55 MS DQ L +AA+A+R KAYAPYS+F VGAA+LADDG IYSGCN+ENAAYP Sbjct: 1 MSKTPTDQ--ALFKAAEAIRAKAYAPYSRFSVGAAILADDGKIYSGCNIENAAYP 53
BLAST of cytidine deaminase vs. nr
Match: gi|1064067516|gb|ODT69880.1| (cytidine deaminase [Pelagibacterium sp. SCN 63-23]) HSP 1 Score: 77.0258 bits (188), Expect = 7.283e-14 Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 0 Query: 7 DQREELVEAAKAVRLKAYAPYSQFLVGAALLADDGAIYSGCNVENAAYP 55 D + L EAA+AVR AYAPYS+F VGAA+LADDG IYSGCNVENAAYP Sbjct: 5 DHDKNLYEAAEAVRKHAYAPYSKFHVGAAILADDGKIYSGCNVENAAYP 53
BLAST of cytidine deaminase vs. nr
Match: gi|521064255|ref|WP_020396206.1| (porin [Thiothrix disciformis]) HSP 1 Score: 79.7221 bits (195), Expect = 1.710e-13 Identity = 73/235 (31.06%), Postives = 111/235 (47.23%), Query Frame = 0 Query: 57 APLAQAGSSLTGSIRYGLNYSDDGTNDAQINIENFGSRIKMAGDSDLGNGMTGYGKLELRLN---ADRNSNVVNRMYAVGVKGNFGDLSFGLQDTAF---DIANPDRTWWNGGTGLVGKRNEKNG-----AVVYKKSFGDIEMRAGAQMINNAVDAEETADIFDFGVKYAANNITLAAAMQNDAASDGTATAISGGYNFGAGDFTVTYGVEDEDFSGAGADKTGIDIQAGFGNFY 280 A A+ G+S GS+R G+ Y D+GT+D I N SR G+++LGNG+TG+G E ++ +D +S V R VGVKG FG G F +A D+ WW+ L G NG A+ + FG + A + M + ++ D ++FG + A T+ +++ + D T A GG AG +V YG+ D G +D+ G G+ Y Sbjct: 21 AAQAETGTSFYGSVRAGIEYFDNGTDDT-TTIRNMNSRFGFKGETELGNGLTGFGHYEFGVSLDGSDGSSAVSMRKGYVGVKGGFGRFRIGQDYHTFYNTVLAPADQGWWD---TLAGATKVTNGGRTGEAMTFDSKFGMFGVGATSYM-----NDDQMGDGYEFGATFGAGPATVGLGIRDTDSEDSTYGASVGGK---AG--SVAYGLSYVDRKDVG---NSVDLHLGLGDAY 238
BLAST of cytidine deaminase vs. nr
Match: gi|803464304|gb|KKB08168.1| (cytidine deaminase [Devosia chinhatensis]) HSP 1 Score: 76.2554 bits (186), Expect = 1.760e-13 Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 0 Query: 1 MSDVTVDQREE-LVEAAKAVRLKAYAPYSQFLVGAALLADDGAIYSGCNVENAAYP 55 M+ +T + ++ L EAA+AVR AYAPYS+F VGAA+LADDG IYSGCNVENAAYP Sbjct: 1 MTLMTTKEHDKALFEAAEAVRKHAYAPYSKFQVGAAILADDGNIYSGCNVENAAYP 56
BLAST of cytidine deaminase vs. nr
Match: gi|1181319745|ref|WP_084620630.1| (cytidine deaminase [Devosia chinhatensis]) HSP 1 Score: 76.2554 bits (186), Expect = 1.811e-13 Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 0 Query: 5 TVDQREELVEAAKAVRLKAYAPYSQFLVGAALLADDGAIYSGCNVENAAYP 55 T + + L EAA+AVR AYAPYS+F VGAA+LADDG IYSGCNVENAAYP Sbjct: 3 TKEHDKALFEAAEAVRKHAYAPYSKFQVGAAILADDGNIYSGCNVENAAYP 53 The following BLAST results are available for this feature:
BLAST of cytidine deaminase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of cytidine deaminase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 5
BLAST of cytidine deaminase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1_size3401120:1461872..1465884+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold1_size3401120-processed-gene-14.18 ID=snap_masked-scaffold1_size3401120-processed-gene-14.18|Name=cytidine deaminase|organism=Tigriopus kingsejongensis|type=gene|length=4013bp|location=Sequence derived from alignment at scaffold1_size3401120:1461872..1465884+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'cytidine deaminase' has the following synonyms
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