rna-binding protein 1, snap_masked-scaffold2006_size22768-processed-gene-0.4 (gene) Tigriopus kingsejongensis

Overview
Namerna-binding protein 1
Unique Namesnap_masked-scaffold2006_size22768-processed-gene-0.4
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of rna-binding protein 1 vs. L. salmonis genes
Match: EMLSAG00000007190 (supercontig:LSalAtl2s:LSalAtl2s404:347783:355385:1 gene:EMLSAG00000007190 transcript:EMLSAT00000007190 description:"maker-LSalAtl2s404-augustus-gene-3.38")

HSP 1 Score: 154.836 bits (390), Expect = 8.586e-47
Identity = 69/76 (90.79%), Postives = 74/76 (97.37%), Query Frame = 0 
Query:    1 MSRHRDWDITCKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVR 76
            MSRHRDWDI+CKVYIGNLGN+ASKYELEDAFSKYGPL+NVWVARNPPGFAFVEFEDPRDAEDSVRG+DG R+CG R
Sbjct:    1 MSRHRDWDISCKVYIGNLGNSASKYELEDAFSKYGPLKNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGXRVCGQR 76
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BLAST of rna-binding protein 1 vs. L. salmonis genes
Match: EMLSAG00000005276 (supercontig:LSalAtl2s:LSalAtl2s2821:6099:8923:1 gene:EMLSAG00000005276 transcript:EMLSAT00000005276 description:"maker-LSalAtl2s2821-augustus-gene-0.8")

HSP 1 Score: 119.398 bits (298), Expect = 1.407e-36
Identity = 54/78 (69.23%), Postives = 68/78 (87.18%), Query Frame = 0 
Query:    1 MSR-HRDWDITCKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVRS 77
            MSR +RD +  CKVY+GNLG+NASK+ELED F +YG +R+VWVARNPPGFAFVEFED RDAED+ + +DG+R+CGVR+
Sbjct:    1 MSRGNRDRNYNCKVYVGNLGDNASKHELEDVFRRYGKVRSVWVARNPPGFAFVEFEDERDAEDASKALDGSRICGVRA 78
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BLAST of rna-binding protein 1 vs. L. salmonis genes
Match: EMLSAG00000008457 (supercontig:LSalAtl2s:LSalAtl2s519:272141:277801:-1 gene:EMLSAG00000008457 transcript:EMLSAT00000008457 description:"maker-LSalAtl2s519-augustus-gene-1.19")

HSP 1 Score: 67.0106 bits (162), Expect = 4.640e-15
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 0 
Query:   12 KVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVR---SHGQP 81
            ++++ +L  +A+K ++E  F K+GPL+ +W+AR+ P FAFV F    DAED  R  DG  + G R   +H +P
Sbjct:  160 RIHVADLDVSATKRDMEKVFGKFGPLKEIWMARSVPCFAFVVFRYREDAEDGXRSADGVEISGRRIRVTHARP 232
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BLAST of rna-binding protein 1 vs. L. salmonis genes
Match: EMLSAG00000002605 (supercontig:LSalAtl2s:LSalAtl2s151:61867:66000:1 gene:EMLSAG00000002605 transcript:EMLSAT00000002605 description:"maker-LSalAtl2s151-augustus-gene-0.11")

HSP 1 Score: 55.0694 bits (131), Expect = 4.930e-11
Identity = 26/65 (40.00%), Postives = 42/65 (64.62%), Query Frame = 0 
Query:   12 KVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVR 76
            ++Y+GN+ ++  + ++E  F  YG LR V +     G+ FVEFED RDA+D+V+ +DG  + G R
Sbjct:    7 RLYLGNISDDTRERDVEKFFKGYGKLREVAL---KNGYGFVEFEDHRDADDAVQDLDGKDMNGSR 68
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BLAST of rna-binding protein 1 vs. L. salmonis genes
Match: EMLSAG00000011735 (supercontig:LSalAtl2s:LSalAtl2s816:214954:217035:1 gene:EMLSAG00000011735 transcript:EMLSAT00000011735 description:"augustus_masked-LSalAtl2s816-processed-gene-2.0")

HSP 1 Score: 53.1434 bits (126), Expect = 3.255e-10
Identity = 25/79 (31.65%), Postives = 47/79 (59.49%), Query Frame = 0 
Query:    1 MSRHRDWDITCKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNP-----PGFAFVEFEDPRDAEDSVRGMDGTRLCG 74
            + RH+   + C+VY+G++     +  ++ AF  +GP+R++ ++ +P      GFAFVE+E P  A+ S+  M+G  + G
Sbjct:   87 LQRHQAIVLMCRVYVGSINFEVKEDTIKQAFLPFGPIRSISMSWDPITQKHKGFAFVEYEMPEAAQLSLEQMNGVIISG 165
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BLAST of rna-binding protein 1 vs. L. salmonis genes
Match: EMLSAG00000008203 (supercontig:LSalAtl2s:LSalAtl2s495:117181:128694:1 gene:EMLSAG00000008203 transcript:EMLSAT00000008203 description:"augustus_masked-LSalAtl2s495-processed-gene-1.3")

HSP 1 Score: 51.6026 bits (122), Expect = 9.857e-10
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 0 
Query:   11 CKVYIGNLGNNASKYELEDAFSKYGPLRNVWVA-RNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVR 76
             ++Y+GNL  +    ++ED F KYG +  + +  R  P FAFVEFED RDA+D+V   DG    G +
Sbjct:    5 TRIYVGNLPPDIRTKDIEDLFYKYGKIVFIDLKNRRGPPFAFVEFEDHRDADDAVYARDGYDYDGYK 71
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BLAST of rna-binding protein 1 vs. L. salmonis genes
Match: EMLSAG00000009270 (supercontig:LSalAtl2s:LSalAtl2s591:151036:155497:-1 gene:EMLSAG00000009270 transcript:EMLSAT00000009270 description:"maker-LSalAtl2s591-augustus-gene-1.13")

HSP 1 Score: 48.9062 bits (115), Expect = 1.170e-8
Identity = 25/68 (36.76%), Postives = 38/68 (55.88%), Query Frame = 0 
Query:    9 ITCKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVR 76
            +  K+YIGNL     K EL   F K+G + +++V     GFA + + D R +ED++R MDG    G +
Sbjct:    1 MRGKIYIGNLNETIRKSELRQEFEKFGEISDLFVNH---GFAHLTYVDTRSSEDAIRIMDGEVFFGSK 65
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BLAST of rna-binding protein 1 vs. L. salmonis genes
Match: EMLSAG00000002556 (supercontig:LSalAtl2s:LSalAtl2s1510:24535:24822:1 gene:EMLSAG00000002556 transcript:EMLSAT00000002556 description:"augustus_masked-LSalAtl2s1510-processed-gene-0.4")

HSP 1 Score: 45.4394 bits (106), Expect = 3.129e-8
Identity = 21/64 (32.81%), Postives = 38/64 (59.38%), Query Frame = 0 
Query:   11 CKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCG 74
             K+++  + +   +  LED FSK GP+ +V++     G+AFV   +  DA+D+ R ++GT + G
Sbjct:    7 TKLFVHGVRDTCPRSVLEDEFSKIGPVTDVYITEK--GYAFVTMTNSEDADDAARKLNGTTVDG 68
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BLAST of rna-binding protein 1 vs. L. salmonis genes
Match: EMLSAG00000007146 (supercontig:LSalAtl2s:LSalAtl2s402:743406:749121:1 gene:EMLSAG00000007146 transcript:EMLSAT00000007146 description:"maker-LSalAtl2s402-augustus-gene-7.14")

HSP 1 Score: 46.595 bits (109), Expect = 6.326e-8
Identity = 23/68 (33.82%), Postives = 39/68 (57.35%), Query Frame = 0 
Query:    9 ITCKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVR 76
            ++ +VY+G L +   + ++E    KYG +R V +     G+ FVEF+D RDA+D+   ++G    G R
Sbjct:   13 MSTRVYMGGLSHRVRERDVEKLIRKYGKVREVSLKN---GYGFVEFDDYRDADDACYDLNGKEFMGER 77
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BLAST of rna-binding protein 1 vs. L. salmonis genes
Match: EMLSAG00000005475 (supercontig:LSalAtl2s:LSalAtl2s294:4530:9586:-1 gene:EMLSAG00000005475 transcript:EMLSAT00000005475 description:"maker-LSalAtl2s294-augustus-gene-0.9")

HSP 1 Score: 46.2098 bits (108), Expect = 9.294e-8
Identity = 22/66 (33.33%), Postives = 40/66 (60.61%), Query Frame = 0 
Query:   11 CKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVR 76
            C+V++GNL  +  + ++E  F +YG + N+++      + F EF+D RDA+D+V  ++G  L   R
Sbjct:   40 CRVFLGNLPYSVRERDIERFFERYGRVYNIFIKSG--KYGFCEFDDYRDADDAVYKLNGCELNSER 103
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BLAST of rna-binding protein 1 vs. SwissProt
Match: gi|55584177|sp|Q02427.3|RBP1_DROME (RecName: Full=RNA-binding protein 1)

HSP 1 Score: 132.494 bits (332), Expect = 2.201e-40
Identity = 57/76 (75.00%), Postives = 68/76 (89.47%), Query Frame = 0 
Query:    1 MSRHRDWDITCKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVR 76
            M R+R+WD+ CKVY+GNLG++ASK+E+E AF+KYGPLRNVWVARNPPGFAFVEFED RDAED+ R +DGTR CG R
Sbjct:    1 MPRYREWDLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGTR 76
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BLAST of rna-binding protein 1 vs. SwissProt
Match: gi|51338672|sp|P84103.1|SRSF3_HUMAN (RecName: Full=Serine/arginine-rich splicing factor 3; AltName: Full=Pre-mRNA-splicing factor SRP20; AltName: Full=Splicing factor, arginine/serine-rich 3 >gi|51338673|sp|P84104.1|SRSF3_MOUSE RecName: Full=Serine/arginine-rich splicing factor 3; AltName: Full=Pre-mRNA-splicing factor SRP20; AltName: Full=Protein X16; AltName: Full=Splicing factor, arginine/serine-rich 3 >gi|122145080|sp|Q3SZR8.1|SRSF3_BOVIN RecName: Full=Serine/arginine-rich splicing factor 3; AltName: Full=Splicing factor, arginine/serine-rich 3)

HSP 1 Score: 111.309 bits (277), Expect = 8.935e-32
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 0 
Query:    4 HRD-WDITCKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVR 76
            HRD   + CKVY+GNLGNN +K ELE AF  YGPLR+VWVARNPPGFAFVEFEDPRDA D+VR +DG  LCG R
Sbjct:    2 HRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCR 75
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BLAST of rna-binding protein 1 vs. SwissProt
Match: gi|3929380|sp|Q16629.1|SRSF7_HUMAN (RecName: Full=Serine/arginine-rich splicing factor 7; AltName: Full=Splicing factor 9G8; AltName: Full=Splicing factor, arginine/serine-rich 7)

HSP 1 Score: 112.079 bits (279), Expect = 3.185e-31
Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = 0 
Query:    1 MSRHRDWDITCKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVR 76
            MSR+  +    KVY+GNLG  A K ELE AFS YGPLR VW+ARNPPGFAFVEFEDPRDAED+VRG+DG  +CG R
Sbjct:    1 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSR 76
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BLAST of rna-binding protein 1 vs. SwissProt
Match: gi|122146164|sp|Q3T106.1|SRSF7_BOVIN (RecName: Full=Serine/arginine-rich splicing factor 7; AltName: Full=Splicing factor, arginine/serine-rich 7)

HSP 1 Score: 111.694 bits (278), Expect = 3.203e-31
Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = 0 
Query:    1 MSRHRDWDITCKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVR 76
            MSR+  +    KVY+GNLG  A K ELE AFS YGPLR VW+ARNPPGFAFVEFEDPRDAED+VRG+DG  +CG R
Sbjct:    1 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSR 76
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BLAST of rna-binding protein 1 vs. SwissProt
Match: gi|71162370|sp|Q8BL97.1|SRSF7_MOUSE (RecName: Full=Serine/arginine-rich splicing factor 7; AltName: Full=Splicing factor, arginine/serine-rich 7)

HSP 1 Score: 108.997 bits (271), Expect = 6.984e-30
Identity = 51/69 (73.91%), Postives = 56/69 (81.16%), Query Frame = 0 
Query:    8 DITCKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVR 76
            D   KVY+GNLG  A K ELE AFS YGPLR VW+ARNPPGFAFVEFEDPRDAED+VRG+DG  +CG R
Sbjct:   37 DSETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSR 105
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BLAST of rna-binding protein 1 vs. SwissProt
Match: gi|56749458|sp|Q18409.1|RSP6_CAEEL (RecName: Full=Probable splicing factor, arginine/serine-rich 6; AltName: Full=CeSRp20; AltName: Full=RNA-binding protein srp-1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.447e-25
Identity = 40/70 (57.14%), Postives = 56/70 (80.00%), Query Frame = 0 
Query:    9 ITCKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVRSH 78
            +  KVY+G L ++A+  ELE+ F ++G +R VWVAR PPGFAFVE++D RDAED+VR +DG+R+CGVR+ 
Sbjct:    1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRAR 70
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BLAST of rna-binding protein 1 vs. SwissProt
Match: gi|75318746|sp|O81126.1|RSZ22_ARATH (RecName: Full=Serine/arginine-rich splicing factor RSZ22; AltName: Full=RS-containing zinc finger protein 22; Short=At-RSZ22; Short=At-RSZp22; Short=AtRSZ22)

HSP 1 Score: 78.5666 bits (192), Expect = 1.044e-18
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 0 
Query:   12 KVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDG 69
            +VY+GNL    ++ ELED F  +G +R+VWVAR PPG+AF++FEDPRDA D++R +DG
Sbjct:    3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60
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BLAST of rna-binding protein 1 vs. SwissProt
Match: gi|75322869|sp|Q69KL9.1|RZ21A_ORYSJ (RecName: Full=Serine/arginine-rich splicing factor RSZ21A; AltName: Full=RS-containing zinc finger protein 21A; Short=Os-RSZ21a; Short=Os-RSZp21a)

HSP 1 Score: 76.6406 bits (187), Expect = 5.872e-18
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 0 
Query:   11 CKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDG 69
             +VY+GNL    +  ELED F  +G LR+VWVAR PPGFAF++F+D RDA+D++R +DG
Sbjct:    2 ARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAQDAIRDIDG 60
[Close]
BLAST of rna-binding protein 1 vs. SwissProt
Match: gi|75324099|sp|Q6K9C3.1|RZP23_ORYSJ (RecName: Full=Serine/arginine-rich splicing factor RSZ23; AltName: Full=RS-containing zinc finger protein 23; Short=Os-RSZ23; Short=Os-RSZp23)

HSP 1 Score: 76.2554 bits (186), Expect = 8.033e-18
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 0 
Query:   11 CKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDG 69
             +VY+GNL    +  E+ED F  +G LR+VWVAR PPGFAF++F+D RDAED++R +DG
Sbjct:    2 ARVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDLDG 60
[Close]
BLAST of rna-binding protein 1 vs. SwissProt
Match: gi|75324004|sp|Q6K4N0.1|RSZ21_ORYSJ (RecName: Full=Serine/arginine-rich splicing factor RSZ21; AltName: Full=RS-containing zinc finger protein 21; Short=Os-RSZ21; Short=Os-RSZp21)

HSP 1 Score: 75.485 bits (184), Expect = 1.524e-17
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 0 
Query:   11 CKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDG 69
             ++Y+GNL    +  ELED F  +G LR+VWVAR PPGFAF++F+D RDAED++R +DG
Sbjct:    2 ARLYVGNLDPRVTSGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 60
[Close]
BLAST of rna-binding protein 1 vs. nr
Match: gi|225712010|gb|ACO11851.1| (RNA-binding protein 1 [Lepeophtheirus salmonis])

HSP 1 Score: 154.836 bits (390), Expect = 1.422e-46
Identity = 70/76 (92.11%), Postives = 75/76 (98.68%), Query Frame = 0 
Query:    1 MSRHRDWDITCKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVR 76
            MSRHRDWDI+CKVYIGNLGN+ASKYELEDAFSKYGPL+NVWVARNPPGFAFVEFEDPRDAEDSVRG+DGTR+CG R
Sbjct:    1 MSRHRDWDISCKVYIGNLGNSASKYELEDAFSKYGPLKNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRVCGQR 76
[Close]
BLAST of rna-binding protein 1 vs. nr
Match: gi|225710746|gb|ACO11219.1| (RNA-binding protein 1 [Caligus rogercresseyi])

HSP 1 Score: 154.451 bits (389), Expect = 1.975e-46
Identity = 70/76 (92.11%), Postives = 75/76 (98.68%), Query Frame = 0 
Query:    1 MSRHRDWDITCKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVR 76
            MSRHRDWDI+CKVYIGNLGN+ASKYELEDAFSKYGPL+NVWVARNPPGFAFVEFEDPRDAEDSVRG+DGTR+CG R
Sbjct:    1 MSRHRDWDISCKVYIGNLGNSASKYELEDAFSKYGPLKNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRVCGQR 76
[Close]
BLAST of rna-binding protein 1 vs. nr
Match: gi|290561220|gb|ADD38012.1| (RNA-binding protein 1 [Lepeophtheirus salmonis])

HSP 1 Score: 154.066 bits (388), Expect = 2.354e-46
Identity = 70/76 (92.11%), Postives = 75/76 (98.68%), Query Frame = 0 
Query:    1 MSRHRDWDITCKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVR 76
            MSRHRDWDI+CKVYIGNLGN+ASKYELEDAFSKYGPL+NVWVARNPPGFAFVEFEDPRDAEDSVRG+DGTR+CG R
Sbjct:    1 MSRHRDWDISCKVYIGNLGNSASKYELEDAFSKYGPLKNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRVCGQR 76
[Close]
BLAST of rna-binding protein 1 vs. nr
Match: gi|1241833981|gb|PBC30291.1| (RNA-binding protein [Apis cerana cerana])

HSP 1 Score: 148.288 bits (373), Expect = 1.396e-43
Identity = 63/76 (82.89%), Postives = 73/76 (96.05%), Query Frame = 0 
Query:    1 MSRHRDWDITCKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVR 76
            MSR+R+WD++CKVY+GNLGN+ASK+E+E AFSKYGPLRNVWVARNPPGFAFVEFEDPRDAED+VRG+DGTR CG R
Sbjct:    5 MSRYREWDLSCKVYVGNLGNSASKHEIESAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDAVRGLDGTRCCGTR 80
[Close]
BLAST of rna-binding protein 1 vs. nr
Match: gi|1061482330|gb|ODM99624.1| (RNA-binding protein 1, partial [Orchesella cincta])

HSP 1 Score: 146.362 bits (368), Expect = 2.253e-43
Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 0 
Query:    1 MSRHRDWDITCKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVR 76
            MSRHRDWD+ CKVY+GNLGNNASK ELE AFSKYGPL+NVWVARNPPGFAF+EFEDPRDAED+VR +DGTR+CGVR
Sbjct:    6 MSRHRDWDLQCKVYVGNLGNNASKNELESAFSKYGPLKNVWVARNPPGFAFIEFEDPRDAEDAVRHLDGTRMCGVR 81
[Close]
BLAST of rna-binding protein 1 vs. nr
Match: gi|242023192|ref|XP_002432020.1| (transformer-2 sex-determining protein, putative [Pediculus humanus corporis] >gi|212517371|gb|EEB19282.1| transformer-2 sex-determining protein, putative [Pediculus humanus corporis])

HSP 1 Score: 145.976 bits (367), Expect = 2.547e-43
Identity = 63/77 (81.82%), Postives = 73/77 (94.81%), Query Frame = 0 
Query:    1 MSRHRDWDITCKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVRS 77
            MSRHR+WD++CKVY+GNLGNN SKYELE  FSKYGPLRNVWVARNPPGFAF+EFEDPRDAED+VRG+DG+R+CG R+
Sbjct:    1 MSRHREWDLSCKVYVGNLGNNGSKYELECIFSKYGPLRNVWVARNPPGFAFIEFEDPRDAEDAVRGLDGSRMCGTRA 77
[Close]
BLAST of rna-binding protein 1 vs. nr
Match: gi|1233163098|ref|XP_022207689.1| (RNA-binding protein 1-like [Nilaparvata lugens])

HSP 1 Score: 145.591 bits (366), Expect = 3.838e-43
Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 0 
Query:    1 MSRHRDWDITCKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVR 76
            MSRHR+WD +CKVY+GNLGNNASK+ELED F+KYGPLRNVWVARNPPGFAFVEFEDPRDAED+VRG+DGTR CG R
Sbjct:    1 MSRHREWDPSCKVYVGNLGNNASKHELEDVFTKYGPLRNVWVARNPPGFAFVEFEDPRDAEDAVRGLDGTRCCGTR 76
[Close]
BLAST of rna-binding protein 1 vs. nr
Match: gi|1339043669|ref|XP_023709905.1| (RNA-binding protein 1-like isoform X2 [Cryptotermes secundus])

HSP 1 Score: 144.821 bits (364), Expect = 6.965e-43
Identity = 62/76 (81.58%), Postives = 74/76 (97.37%), Query Frame = 0 
Query:    1 MSRHRDWDITCKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVR 76
            MSR+R+WD++CKVY+GNLG++ASK+E+E AFSKYGPLRNVWVARNPPGFAFVEFEDPRDAED+VRG+DGTR+CG R
Sbjct:    1 MSRYREWDLSCKVYVGNLGSSASKHEIESAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDAVRGLDGTRMCGTR 76
[Close]
BLAST of rna-binding protein 1 vs. nr
Match: gi|1035594176|ref|XP_016904396.1| (PREDICTED: RNA-binding protein 1-like [Apis cerana])

HSP 1 Score: 144.436 bits (363), Expect = 8.981e-43
Identity = 63/76 (82.89%), Postives = 73/76 (96.05%), Query Frame = 0 
Query:    1 MSRHRDWDITCKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVR 76
            MSR+R+WD++CKVY+GNLGN+ASK+E+E AFSKYGPLRNVWVARNPPGFAFVEFEDPRDAED+VRG+DGTR CG R
Sbjct:   32 MSRYREWDLSCKVYVGNLGNSASKHEIESAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDAVRGLDGTRCCGTR 107
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BLAST of rna-binding protein 1 vs. nr
Match: gi|242014601|ref|XP_002427975.1| (RNA-binding protein, putative [Pediculus humanus corporis] >gi|212512474|gb|EEB15237.1| RNA-binding protein, putative [Pediculus humanus corporis])

HSP 1 Score: 143.28 bits (360), Expect = 1.074e-42
Identity = 64/76 (84.21%), Postives = 73/76 (96.05%), Query Frame = 0 
Query:    1 MSRHRDWDITCKVYIGNLGNNASKYELEDAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGMDGTRLCGVR 76
            MSR+R+WD++CKVY+GNLG+NASK+E+E AFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRG+DGTR CG R
Sbjct:    1 MSRYREWDLSCKVYVGNLGSNASKHEIEAAFSKYGPLRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTR 76
The following BLAST results are available for this feature:
BLAST of rna-binding protein 1 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 13
Match NameE-valueIdentityDescription
EMLSAG000000071908.586e-4790.79supercontig:LSalAtl2s:LSalAtl2s404:347783:355385:1... [more]
EMLSAG000000052761.407e-3669.23supercontig:LSalAtl2s:LSalAtl2s2821:6099:8923:1 ge... [more]
EMLSAG000000084574.640e-1539.73supercontig:LSalAtl2s:LSalAtl2s519:272141:277801:-... [more]
EMLSAG000000026054.930e-1140.00supercontig:LSalAtl2s:LSalAtl2s151:61867:66000:1 g... [more]
EMLSAG000000117353.255e-1031.65supercontig:LSalAtl2s:LSalAtl2s816:214954:217035:1... [more]
EMLSAG000000082039.857e-1041.79supercontig:LSalAtl2s:LSalAtl2s495:117181:128694:1... [more]
EMLSAG000000092701.170e-836.76supercontig:LSalAtl2s:LSalAtl2s591:151036:155497:-... [more]
EMLSAG000000025563.129e-832.81supercontig:LSalAtl2s:LSalAtl2s1510:24535:24822:1 ... [more]
EMLSAG000000071466.326e-833.82supercontig:LSalAtl2s:LSalAtl2s402:743406:749121:1... [more]
EMLSAG000000054759.294e-833.33supercontig:LSalAtl2s:LSalAtl2s294:4530:9586:-1 ge... [more]

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BLAST of rna-binding protein 1 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
gi|55584177|sp|Q02427.3|RBP1_DROME2.201e-4075.00RecName: Full=RNA-binding protein 1[more]
gi|51338672|sp|P84103.1|SRSF3_HUMAN8.935e-3272.97RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|3929380|sp|Q16629.1|SRSF7_HUMAN3.185e-3169.74RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|122146164|sp|Q3T106.1|SRSF7_BOVIN3.203e-3169.74RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|71162370|sp|Q8BL97.1|SRSF7_MOUSE6.984e-3073.91RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|56749458|sp|Q18409.1|RSP6_CAEEL4.447e-2557.14RecName: Full=Probable splicing factor, arginine/s... [more]
gi|75318746|sp|O81126.1|RSZ22_ARATH1.044e-1856.90RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|75322869|sp|Q69KL9.1|RZ21A_ORYSJ5.872e-1855.93RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|75324099|sp|Q6K9C3.1|RZP23_ORYSJ8.033e-1855.93RecName: Full=Serine/arginine-rich splicing factor... [more]
gi|75324004|sp|Q6K4N0.1|RSZ21_ORYSJ1.524e-1755.93RecName: Full=Serine/arginine-rich splicing factor... [more]

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BLAST of rna-binding protein 1 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|225712010|gb|ACO11851.1|1.422e-4692.11RNA-binding protein 1 [Lepeophtheirus salmonis][more]
gi|225710746|gb|ACO11219.1|1.975e-4692.11RNA-binding protein 1 [Caligus rogercresseyi][more]
gi|290561220|gb|ADD38012.1|2.354e-4692.11RNA-binding protein 1 [Lepeophtheirus salmonis][more]
gi|1241833981|gb|PBC30291.1|1.396e-4382.89RNA-binding protein [Apis cerana cerana][more]
gi|1061482330|gb|ODM99624.1|2.253e-4385.53RNA-binding protein 1, partial [Orchesella cincta][more]
gi|242023192|ref|XP_002432020.1|2.547e-4381.82transformer-2 sex-determining protein, putative [P... [more]
gi|1233163098|ref|XP_022207689.1|3.838e-4385.53RNA-binding protein 1-like [Nilaparvata lugens][more]
gi|1339043669|ref|XP_023709905.1|6.965e-4381.58RNA-binding protein 1-like isoform X2 [Cryptoterme... [more]
gi|1035594176|ref|XP_016904396.1|8.981e-4382.89PREDICTED: RNA-binding protein 1-like [Apis cerana... [more]
gi|242014601|ref|XP_002427975.1|1.074e-4284.21RNA-binding protein, putative [Pediculus humanus c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold2006_size22768supercontigscaffold2006_size22768:14307..14558 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold2006_size22768-processed-gene-0.4-mRNA-1snap_masked-scaffold2006_size22768-processed-gene-0.4-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold2006_size22768:14307..14558-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold2006_size22768-processed-gene-0.4 ID=snap_masked-scaffold2006_size22768-processed-gene-0.4|Name=rna-binding protein 1|organism=Tigriopus kingsejongensis|type=gene|length=252bp|location=Sequence derived from alignment at scaffold2006_size22768:14307..14558- (Tigriopus kingsejongensis)
ATGTCGAGACATCGCGATTGGGACATCACCTGCAAGGTGTACATTGGCAA
CTTGGGCAACAACGCCTCCAAGTATGAATTGGAGGATGCCTTCTCCAAAT
ACGGTCCCTTGAGGAACGTCTGGGTGGCTCGGAACCCGCCCGGATTTGCG
TTCGTCGAATTTGAGGATCCTCGCGACGCCGAGGATTCGGTTCGGGGCAT
GGACGGAACCCGACTTTGCGGAGTAAGATCCCATGGCCAGCCGCCATTGT
AG
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Synonyms
The feature 'rna-binding protein 1' has the following synonyms
Synonym
Tk02184
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