rna-binding protein, snap_masked-scaffold2255_size18018-processed-gene-0.0 (gene) Tigriopus kingsejongensis

Overview
Namerna-binding protein
Unique Namesnap_masked-scaffold2255_size18018-processed-gene-0.0
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of rna-binding protein vs. L. salmonis genes
Match: EMLSAG00000000402 (supercontig:LSalAtl2s:LSalAtl2s1063:89051:89620:1 gene:EMLSAG00000000402 transcript:EMLSAT00000000402 description:"augustus_masked-LSalAtl2s1063-processed-gene-0.5")

HSP 1 Score: 162.155 bits (409), Expect = 1.228e-51
Identity = 107/143 (74.83%), Postives = 115/143 (80.42%), Query Frame = 0 
Query:   17 MRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKLKPKSAKS-----TEREEKRVLGLVLLRGENIVSMTVEGPPPSDEGMPRVPIPGAGGPGLGRA----AGRGVPMGGAAPGLAGPVRGVGGPAPSMMAPGGMAASAPPQM 150
            MR+ILQD RTFIGTFKAFDKHMNLI+GDCEEFRKL+PK+         EREEKRVLGLVLLRGENIVSMTVEGPPP++EGMPRVP+PGA GPG+GRA           GG APGLAGPVRG GGP P MM PGGMA SAPPQM
Sbjct:    1 MRIILQDXRTFIGTFKAFDKHMNLIMGDCEEFRKLRPKNVAKGCPAPVEREEKRVLGLVLLRGENIVSMTVEGPPPAEEGMPRVPLPGA-GPGIGRAAGXGMIPPGGPGGPAPGLAGPVRGXGGPXPQMMXPGGMAVSAPPQM 142
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BLAST of rna-binding protein vs. SwissProt
Match: gi|75057373|sp|Q9N1Q0.1|RSMB_MACEU (RecName: Full=Small nuclear ribonucleoprotein-associated protein B'; Short=snRNP-B'; Short=snRPB'; AltName: Full=Sm protein B'; Short=Sm-B'; Short=SmB')

HSP 1 Score: 204.912 bits (520), Expect = 4.733e-66
Identity = 105/146 (71.92%), Postives = 120/146 (82.19%), Query Frame = 0 
Query:    1 MVVGRNNKMSGYINYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKLKPKSAKSTEREEKRVLGLVLLRGENIVSMTVEGPPPSDEGMPRVPIPG-AGGPGLGRAAGRGVPMGGAAP----GLAGPVRGVGGPAPSMMAPGG 141
            M VG+++KM  +I+YRMR ILQD R FIGTFKAFDKHMNLIL DC+EFRK+KPK++K  EREEKRVLGLVLLRGEN+VSMTVEGPPP D G+ RVP+ G AGGPG+GRAAGRGVP G   P    GLAGPVRGVGGP+  +M P G
Sbjct:    1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLSGAAGGPGIGRAAGRGVPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
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BLAST of rna-binding protein vs. SwissProt
Match: gi|10720262|sp|Q05856.1|RSMB_DROME (RecName: Full=Small nuclear ribonucleoprotein-associated protein B; Short=snRNP-B; AltName: Full=Sm protein B; Short=Sm-B; Short=SmB)

HSP 1 Score: 191.045 bits (484), Expect = 3.802e-61
Identity = 110/158 (69.62%), Postives = 128/158 (81.01%), Query Frame = 0 
Query:    1 MVVGRNNKMSGYINYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKLKPKSAKSTEREEKRVLGLVLLRGENIVSMTVEGPPPSDEGMPRVPIPGAG-GPGLGRAAGRGVPMGGAA--PGLAGPVRGVGGPAPSMMAPGGMAASAPPQMRGPPP 155
            M +G+NNKM  ++NYR+R++LQDSRTFIGTFKAFDKHMNLILGDCEEFRK++ K++K  EREEKRVLG VLLRGENIVS+TVEGPPP +EG+PRVPIPGA  GPG+GR AGRG+P+  +A   GL GPVRGVGGPA   MAP G      P M  PPP
Sbjct:    1 MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRVAGRGMPINLSAVPAGLQGPVRGVGGPAQQHMAPMGRGVPRAPMMGAPPP 158
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BLAST of rna-binding protein vs. SwissProt
Match: gi|134038|sp|P27048.1|RSMB_MOUSE (RecName: Full=Small nuclear ribonucleoprotein-associated protein B; Short=snRNP-B; Short=snRPB; AltName: Full=Sm protein B; Short=Sm-B; Short=SmB)

HSP 1 Score: 183.341 bits (464), Expect = 1.365e-57
Identity = 96/146 (65.75%), Postives = 110/146 (75.34%), Query Frame = 0 
Query:    1 MVVGRNNKMSGYINYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKLKPKSAKSTEREEKRVLGLVLLRGENIVSMTVEGPPPSDEGMPRVPI-----PGAGGPGLGRAAGRGVPMGGAAPGLAGPVRGVGGPAPSMMAPGG 141
            M VG+++KM  +I+YRMR ILQD R FIGTFKAFDKHMNLIL DC+EFRK+KPK++K  EREEKRVLGLVLLRGEN+VSMTVEGPPP D G+ RVP+         G   GR    GVPM  A  GLAGPVRGVGGP+  +M P G
Sbjct:    1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
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BLAST of rna-binding protein vs. SwissProt
Match: gi|134037|sp|P14678.2|RSMB_HUMAN (RecName: Full=Small nuclear ribonucleoprotein-associated proteins B and B'; Short=snRNP-B; AltName: Full=Sm protein B/B'; Short=Sm-B/B'; Short=SmB/B')

HSP 1 Score: 183.341 bits (464), Expect = 1.790e-57
Identity = 96/146 (65.75%), Postives = 110/146 (75.34%), Query Frame = 0 
Query:    1 MVVGRNNKMSGYINYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKLKPKSAKSTEREEKRVLGLVLLRGENIVSMTVEGPPPSDEGMPRVPI-----PGAGGPGLGRAAGRGVPMGGAAPGLAGPVRGVGGPAPSMMAPGG 141
            M VG+++KM  +I+YRMR ILQD R FIGTFKAFDKHMNLIL DC+EFRK+KPK++K  EREEKRVLGLVLLRGEN+VSMTVEGPPP D G+ RVP+         G   GR    GVPM  A  GLAGPVRGVGGP+  +M P G
Sbjct:    1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
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BLAST of rna-binding protein vs. SwissProt
Match: gi|12643865|sp|Q9TU67.1|RSMB_ERIEU (RecName: Full=Small nuclear ribonucleoprotein-associated protein B'; Short=snRNP-B'; Short=snRPB'; AltName: Full=Sm protein B'; Short=Sm-B'; Short=SmB')

HSP 1 Score: 183.341 bits (464), Expect = 1.790e-57
Identity = 96/146 (65.75%), Postives = 110/146 (75.34%), Query Frame = 0 
Query:    1 MVVGRNNKMSGYINYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKLKPKSAKSTEREEKRVLGLVLLRGENIVSMTVEGPPPSDEGMPRVPI-----PGAGGPGLGRAAGRGVPMGGAAPGLAGPVRGVGGPAPSMMAPGG 141
            M VG+++KM  +I+YRMR ILQD R FIGTFKAFDKHMNLIL DC+EFRK+KPK++K  EREEKRVLGLVLLRGEN+VSMTVEGPPP D G+ RVP+         G   GR    GVPM  A  GLAGPVRGVGGP+  +M P G
Sbjct:    1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
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BLAST of rna-binding protein vs. SwissProt
Match: gi|75056662|sp|Q58DW4.1|RSMB_BOVIN (RecName: Full=Small nuclear ribonucleoprotein-associated protein B'; Short=snRNP-B'; Short=snRPB'; AltName: Full=Sm protein B'; Short=Sm-B'; Short=SmB')

HSP 1 Score: 182.956 bits (463), Expect = 2.249e-57
Identity = 96/146 (65.75%), Postives = 110/146 (75.34%), Query Frame = 0 
Query:    1 MVVGRNNKMSGYINYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKLKPKSAKSTEREEKRVLGLVLLRGENIVSMTVEGPPPSDEGMPRVPI-----PGAGGPGLGRAAGRGVPMGGAAPGLAGPVRGVGGPAPSMMAPGG 141
            M VG+++KM  +I+YRMR ILQD R FIGTFKAFDKHMNLIL DC+EFRK+KPK++K  EREEKRVLGLVLLRGEN+VSMTVEGPPP D G+ RVP+         G   GR    GVPM  A  GLAGPVRGVGGP+  +M P G
Sbjct:    1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
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BLAST of rna-binding protein vs. SwissProt
Match: gi|10720263|sp|Q9PV94.1|RSMB_CHICK (RecName: Full=Small nuclear ribonucleoprotein-associated protein B'; Short=snRNP-B'; Short=snRPB'; AltName: Full=Sm protein B'; Short=Sm-B'; Short=SmB')

HSP 1 Score: 181.415 bits (459), Expect = 8.763e-57
Identity = 104/146 (71.23%), Postives = 119/146 (81.51%), Query Frame = 0 
Query:    1 MVVGRNNKMSGYINYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKLKPKSAKSTEREEKRVLGLVLLRGENIVSMTVEGPPPSDEGMPRVPI-PGAGGPGLGRAAGRGVPMGGAAP----GLAGPVRGVGGPAPSMMAPGG 141
            M VG+++KM  +I+YRMR ILQD R FIGTFKAFDKHMNLIL DC+EFRK+KPK++K  EREEKRVLGLVLLRGEN+VSMTVEGPPP D G+ RVP+   AGGPG+GRAAGRGVP G   P    GLAGPVRGVGGP+  +M P G
Sbjct:    1 MTVGKSSKMLQHIDYRMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGAPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
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BLAST of rna-binding protein vs. SwissProt
Match: gi|52783793|sp|P63164.1|RSMN_RAT (RecName: Full=Small nuclear ribonucleoprotein-associated protein N; Short=snRNP-N; AltName: Full=Sm protein D; Short=Sm-D; AltName: Full=Sm protein N; Short=Sm-N; Short=SmN >gi|52783794|sp|P63162.1|RSMN_HUMAN RecName: Full=Small nuclear ribonucleoprotein-associated protein N; Short=snRNP-N; AltName: Full=Sm protein D; Short=Sm-D; AltName: Full=Sm protein N; Short=Sm-N; Short=SmN; AltName: Full=Tissue-specific-splicing protein >gi|52783795|sp|P63163.1|RSMN_MOUSE RecName: Full=Small nuclear ribonucleoprotein-associated protein N; Short=snRNP-N; AltName: Full=Sm protein D; Short=Sm-D; AltName: Full=Sm protein N; Short=Sm-N; Short=SmN; AltName: Full=Tissue-specific-splicing protein >gi|75070532|sp|Q5R6I0.1|RSMN_PONAB RecName: Full=Small nuclear ribonucleoprotein-associated protein N; Short=snRNP-N; AltName: Full=Sm protein N; Short=Sm-N; Short=SmN >gi|75071163|sp|Q60HD3.1|RSMN_MACFA RecName: Full=Small nuclear ribonucleoprotein-associated protein N; Short=snRNP-N; AltName: Full=Sm protein N; Short=Sm-N; Short=SmN)

HSP 1 Score: 181.415 bits (459), Expect = 1.021e-56
Identity = 96/146 (65.75%), Postives = 110/146 (75.34%), Query Frame = 0 
Query:    1 MVVGRNNKMSGYINYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKLKPKSAKSTEREEKRVLGLVLLRGENIVSMTVEGPPPSDEGMPRVPI-----PGAGGPGLGRAAGRGVPMGGAAPGLAGPVRGVGGPAPSMMAPGG 141
            M VG+++KM  +I+YRMR ILQD R FIGTFKAFDKHMNLIL DC+EFRK+KPK+AK  EREEKRVLGLVLLRGEN+VSMTVEGPPP D G+ RVP+         G   GR    GVP+  A  GLAGPVRGVGGP+  +M P G
Sbjct:    1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 146
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BLAST of rna-binding protein vs. SwissProt
Match: gi|115311861|sp|Q17QN3.1|RSMN_BOVIN (RecName: Full=Small nuclear ribonucleoprotein-associated protein N; Short=snRNP-N; AltName: Full=Sm protein N; Short=Sm-N; Short=SmN)

HSP 1 Score: 180.644 bits (457), Expect = 1.877e-56
Identity = 96/146 (65.75%), Postives = 110/146 (75.34%), Query Frame = 0 
Query:    1 MVVGRNNKMSGYINYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKLKPKSAKSTEREEKRVLGLVLLRGENIVSMTVEGPPPSDEGMPRVPI-----PGAGGPGLGRAAGRGVPMGGAAPGLAGPVRGVGGPAPSMMAPGG 141
            M VG+++KM  +I+YRMR ILQD R FIGTFKAFDKHMNLIL DC+EFRK+KPK+AK  EREEKRVLGLVLLRGEN+VSMTVEGPPP D G+ RVP+         G   GR    GVP+  A  GLAGPVRGVGGP+  +M P G
Sbjct:    1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 146
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BLAST of rna-binding protein vs. SwissProt
Match: gi|10720265|sp|Q9TU66.1|RSMB_MONDO (RecName: Full=Small nuclear ribonucleoprotein-associated protein B'; Short=snRNP-B'; Short=snRPB'; AltName: Full=Sm protein B'; Short=Sm-B'; Short=SmB')

HSP 1 Score: 180.259 bits (456), Expect = 3.029e-56
Identity = 94/146 (64.38%), Postives = 109/146 (74.66%), Query Frame = 0 
Query:    1 MVVGRNNKMSGYINYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKLKPKSAKSTEREEKRVLGLVLLRGENIVSMTVEGPPPSDEGMPRVPI-----PGAGGPGLGRAAGRGVPMGGAAPGLAGPVRGVGGPAPSMMAPGG 141
            M VG+++KM  +I+ RMR ILQD R FIGTFKAFDKHMNLIL DC+EFRK+KPK++K  EREEKRVLGLVLLRGEN+VSMTVEGPPP D G+ RVP+         G   GR    GVPM  A  GLAGP+RGVGGP+  +M P G
Sbjct:    1 MTVGKSSKMLQHIDCRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGVPAGVPMPQAPAGLAGPIRGVGGPSQQVMTPQG 146
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BLAST of rna-binding protein vs. nr
Match: gi|1316132298|ref|XP_023214911.1| (small nuclear ribonucleoprotein-associated protein B'-like [Centruroides sculpturatus])

HSP 1 Score: 236.884 bits (603), Expect = 5.910e-76
Identity = 122/156 (78.21%), Postives = 135/156 (86.54%), Query Frame = 0 
Query:    1 MVVGRNNKMSGYINYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKLKPKSAKSTEREEKRVLGLVLLRGENIVSMTVEGPPPSDEGMPRVPIPGAG-GPGLGRAAGRGV---PMGGAAPGLAGPVRGVGGPAPSMMAPGGM-AASAPPQMR 151
            M + +NNKM  +INYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRK+KPKSAK TEREEKRVLGLVLLRGENIVS+TVEGPPP++EG+PRVPIPGA  GPG+GRAAGRGV   P+G A  GL GPVRGVGGP+P +M P G    SAPPQ+R
Sbjct:    1 MTISKNNKMLQHINYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKVKPKSAKQTEREEKRVLGLVLLRGENIVSLTVEGPPPAEEGLPRVPIPGAAPGPGIGRAAGRGVPAAPIGTAPAGLQGPVRGVGGPSPQVMTPQGRGTVSAPPQIR 156
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BLAST of rna-binding protein vs. nr
Match: gi|1059225417|ref|XP_017758257.1| (PREDICTED: small nuclear ribonucleoprotein-associated protein B [Eufriesea mexicana])

HSP 1 Score: 220.32 bits (560), Expect = 7.113e-70
Identity = 113/155 (72.90%), Postives = 129/155 (83.23%), Query Frame = 0 
Query:    1 MVVGRNNKMSGYINYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKLKPKSAKSTEREEKRVLGLVLLRGENIVSMTVEGPPPSDEGMPRVPIPGAG-GPGLGRAAGRGVP--MGGAAPGLAGPVRGVGGPAPSMMAPGGM-AASAPPQMR 151
            M +G+NNKM  +INYR+R+ILQDSRTFIGTFKAFDKHMNLILGDCEEFRK+KPK+ K  ERE+KRVLG VLLRGENIVS+TVEGPP  +EG+PRVPIPGA  GPG+GRAAGRG+P  + G   GL GPVRGVGGP+  +M PGG    SAPPQM 
Sbjct:    1 MTIGKNNKMLQHINYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPEREDKRVLGFVLLRGENIVSLTVEGPPAPEEGLPRVPIPGAAPGPGMGRAAGRGMPANVAGVPAGLQGPVRGVGGPSQQIMTPGGRGQVSAPPQMH 155
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BLAST of rna-binding protein vs. nr
Match: gi|957816224|ref|XP_014665708.1| (PREDICTED: small nuclear ribonucleoprotein-associated protein B-like [Priapulus caudatus])

HSP 1 Score: 218.009 bits (554), Expect = 3.806e-69
Identity = 122/157 (77.71%), Postives = 134/157 (85.35%), Query Frame = 0 
Query:    1 MVVGRNNKMSGYINYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKLKPKSAKSTEREEKRVLGLVLLRGENIVSMTVEGPPPSDEGMPRVPI-PGAGGPGLGRAAGRGVPMG-----GAAPGLAGPVRGVGGPAPSMMAPG--GMAASAPPQ 149
            MV+G+++KM+ ++NYRMRV LQDSR FIGTFKAFDKHMNLILGDCEEFRKLKPKS K TEREEKRVLGLVLLRGENIVSMTVEGPPP+D+G+PRVPI    GGPG+GRAAGRGVPMG     GAAPGL GPVRGVGGP+P MM P   G   SAPPQ
Sbjct:    1 MVIGKSSKMTQHLNYRMRVTLQDSRIFIGTFKAFDKHMNLILGDCEEFRKLKPKS-KGTEREEKRVLGLVLLRGENIVSMTVEGPPPADDGVPRVPIPGAMGGPGMGRAAGRGVPMGGAATSGAAPGLQGPVRGVGGPSPQMMTPQARGAQVSAPPQ 156
[Close]
BLAST of rna-binding protein vs. nr
Match: gi|1026567822|gb|OAD56398.1| (Small nuclear ribonucleoprotein-associated protein B, partial [Eufriesea mexicana])

HSP 1 Score: 218.009 bits (554), Expect = 4.466e-69
Identity = 112/154 (72.73%), Postives = 128/154 (83.12%), Query Frame = 0 
Query:    2 VVGRNNKMSGYINYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKLKPKSAKSTEREEKRVLGLVLLRGENIVSMTVEGPPPSDEGMPRVPIPGAG-GPGLGRAAGRGVP--MGGAAPGLAGPVRGVGGPAPSMMAPGGM-AASAPPQMR 151
             +G+NNKM  +INYR+R+ILQDSRTFIGTFKAFDKHMNLILGDCEEFRK+KPK+ K  ERE+KRVLG VLLRGENIVS+TVEGPP  +EG+PRVPIPGA  GPG+GRAAGRG+P  + G   GL GPVRGVGGP+  +M PGG    SAPPQM 
Sbjct:    1 TIGKNNKMLQHINYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPEREDKRVLGFVLLRGENIVSLTVEGPPAPEEGLPRVPIPGAAPGPGMGRAAGRGMPANVAGVPAGLQGPVRGVGGPSQQIMTPGGRGQVSAPPQMH 154
[Close]
BLAST of rna-binding protein vs. nr
Match: gi|1233184758|ref|XP_022193986.1| (small nuclear ribonucleoprotein-associated protein B-like [Nilaparvata lugens])

HSP 1 Score: 213.772 bits (543), Expect = 2.543e-67
Identity = 107/153 (69.93%), Postives = 129/153 (84.31%), Query Frame = 0 
Query:    1 MVVGRNNKMSGYINYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKLKPKSAKSTEREEKRVLGLVLLRGENIVSMTVEGPPPSDEGMPRVPIPGAG-GPGLGRAAGRGVPMGGAA--PGLAGPVRGVGGPAPSMMAPGGM-AASAPPQ 149
            M +G+NNKM  ++NYR+R+ILQDSRTF+GTFKAFDKHMNLILGDC+EFRK+KPK++K  EREEKR LG VLLRGENIVS+TVEG PP +EG+PRVPIPG+  GPG+ RAAGRG+P GG++   GL GPV+GVGGP+  +M PGG    SAPPQ
Sbjct:    1 MTIGKNNKMQQHLNYRVRIILQDSRTFVGTFKAFDKHMNLILGDCDEFRKIKPKTSKQPEREEKRTLGFVLLRGENIVSLTVEGLPPPEEGLPRVPIPGSMPGPGIARAAGRGMPTGGSSVPAGLQGPVKGVGGPSQQVMTPGGRGQLSAPPQ 153
[Close]
BLAST of rna-binding protein vs. nr
Match: gi|1233184746|ref|XP_022193979.1| (small nuclear ribonucleoprotein-associated protein B-like isoform X1 [Nilaparvata lugens] >gi|1233184748|ref|XP_022193980.1| small nuclear ribonucleoprotein-associated protein B-like isoform X2 [Nilaparvata lugens])

HSP 1 Score: 213.001 bits (541), Expect = 5.006e-67
Identity = 107/153 (69.93%), Postives = 129/153 (84.31%), Query Frame = 0 
Query:    1 MVVGRNNKMSGYINYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKLKPKSAKSTEREEKRVLGLVLLRGENIVSMTVEGPPPSDEGMPRVPIPGAG-GPGLGRAAGRGVPMGGAA--PGLAGPVRGVGGPAPSMMAPGGM-AASAPPQ 149
            M +G+NNKM  ++NYR+R+ILQDSRTF+GTFKAFDKHMNLILGDC+EFRK+KPK++K  EREEKR LG VLLRGENIVS+TVEG PP +EG+PRVPIPG+  GPG+ RAAGRG+P GG++   GL GPV+GVGGP+  +M PGG    SAPPQ
Sbjct:    1 MTIGKNNKMQQHLNYRVRIILQDSRTFVGTFKAFDKHMNLILGDCDEFRKIKPKTSKQPEREEKRTLGFVLLRGENIVSLTVEGLPPPEEGLPRVPIPGSMPGPGIARAAGRGMPTGGSSVPAGLQGPVKGVGGPSQQVMTPGGRGQLSAPPQ 153
[Close]
BLAST of rna-binding protein vs. nr
Match: gi|440586625|emb|CCK33034.1| (RNA-binding protein SmB [Platynereis dumerilii])

HSP 1 Score: 205.297 bits (521), Expect = 3.951e-64
Identity = 113/156 (72.44%), Postives = 128/156 (82.05%), Query Frame = 0 
Query:    1 MVVGRNNKMSGYINYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKLKPKSAKSTEREEKRVLGLVLLRGENIVSMTVEGPPPSDEGMPRVPIPGAGGPGLGRAAGRGVPMGGAA---PGLAGPVRGVGGPAPSMMAPG--GMAASAPPQMR 151
            M VG+++KM  +INYRMR  LQD R FIGTFKAFDKHMNLILGDC+EFRK+KPK AK    E++ VLGLVLLRGEN+VSMTVEGPPP+DEGM RVP+PG+ GPG+GRAAGRGVP GGAA   PGL GPVRGVGGP+  MM PG  G   SAPPQ+R
Sbjct:    1 MTVGKSSKMLQHINYRMRCTLQDGRIFIGTFKAFDKHMNLILGDCDEFRKIKPKKAKEEREEKR-VLGLVLLRGENLVSMTVEGPPPADEGMARVPLPGSAGPGMGRAAGRGVPSGGAAGAMPGLQGPVRGVGGPSSQMMQPGGRGSTVSAPPQIR 155
[Close]
BLAST of rna-binding protein vs. nr
Match: gi|1242810303|ref|XP_022345999.1| (small nuclear ribonucleoprotein-associated protein B-like [Crassostrea virginica])

HSP 1 Score: 204.142 bits (518), Expect = 4.098e-64
Identity = 103/141 (73.05%), Postives = 118/141 (83.69%), Query Frame = 0 
Query:    1 MVVGRNNKMSGYINYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKLKPKSAKSTEREEKRVLGLVLLRGENIVSMTVEGPPPSDEGMPRVPIPGAG-GPGLGRAAGRGV--PMGGAAPGLAGPVRGVGGPAPSMMA 138
            M VGR++KM  +INYRMR  LQD RTFIGTFKAFDKHMNLILGDC+EFRK+KPKS+K  EREEKRVLGLVLLRGE++VSMTVEGPPP++EG+ RVP+ GA  G G+GRAAGRG+  P    APGL GP RGVGGP+  MMA
Sbjct:    1 MTVGRSSKMLQHINYRMRCTLQDGRTFIGTFKAFDKHMNLILGDCDEFRKIKPKSSKQGEREEKRVLGLVLLRGEHLVSMTVEGPPPAEEGVARVPLAGAAPGQGMGRAAGRGIAGPGASGAPGLQGPARGVGGPSQQMMA 141
[Close]
BLAST of rna-binding protein vs. nr
Match: gi|1228006901|ref|XP_021935361.1| (small nuclear ribonucleoprotein-associated protein B [Zootermopsis nevadensis] >gi|646701111|gb|KDR10995.1| Small nuclear ribonucleoprotein-associated protein B [Zootermopsis nevadensis])

HSP 1 Score: 205.297 bits (521), Expect = 6.105e-64
Identity = 117/157 (74.52%), Postives = 131/157 (83.44%), Query Frame = 0 
Query:    1 MVVGRNNKMSGYINYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKLKPKSAKSTEREEKRVLGLVLLRGENIVSMTVEGPPPSDEGMPRVPIPGAG-GPGLGRAAGRGVPMG--GAAPGLAGPVRGVGGPAPSMMAPGGM---AASAPPQMR 151
            M + +NNKM  +INYR+R+ILQDSRTFIGTFKAFDKHMNLILGDCEEFRK+KPK++K  EREEKRVLG VLLRGENIVS+TVEGPPP +EG+PRVPIPGA  GPG+GRAAGRGVP G  G   GL GPVRGVGGP+  +M PGG      SAPPQMR
Sbjct:    1 MTISKNNKMLQHINYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNSKQPEREEKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGMGRAAGRGVPTGATGVPAGLQGPVRGVGGPSQQVMTPGGRGGPQVSAPPQMR 157
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BLAST of rna-binding protein vs. nr
Match: gi|585698065|ref|XP_006822502.1| (PREDICTED: small nuclear ribonucleoprotein-associated protein B'-like [Saccoglossus kowalevskii])

HSP 1 Score: 203.371 bits (516), Expect = 6.432e-64
Identity = 103/148 (69.59%), Postives = 122/148 (82.43%), Query Frame = 0 
Query:    1 MVVGRNNKMSGYINYRMRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKLKPKSAKSTEREEKRVLGLVLLRGENIVSMTVEGPPPSDEGMPRVPIPGAG-GPGLGRAAGRGVPM--GGAAPGLAGPVRGVGGPAPSMMAPGGMAAS 145
            M VG+++KM  +IN+RMR+ +QD R FIGTF AFDKHMNLILGDCEEFRK+KPK+ K  EREEKRVLGLVLLRGE++VSMTVEGPPP+ EG+PRVPIPGA  GPG+GRAAGRGVP     A  GL+GPVRG+GGP+  +M P G  A+
Sbjct:    1 MTVGKSSKMLQHINFRMRIAIQDGRIFIGTFLAFDKHMNLILGDCEEFRKIKPKNTKQPEREEKRVLGLVLLRGEHLVSMTVEGPPPAVEGLPRVPIPGAAPGPGMGRAAGRGVPAPSSHAPAGLSGPVRGIGGPSQQIMTPQGRGAA 148
The following BLAST results are available for this feature:
BLAST of rna-binding protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000004021.228e-5174.83supercontig:LSalAtl2s:LSalAtl2s1063:89051:89620:1 ... [more]
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BLAST of rna-binding protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
gi|75057373|sp|Q9N1Q0.1|RSMB_MACEU4.733e-6671.92RecName: Full=Small nuclear ribonucleoprotein-asso... [more]
gi|10720262|sp|Q05856.1|RSMB_DROME3.802e-6169.62RecName: Full=Small nuclear ribonucleoprotein-asso... [more]
gi|134038|sp|P27048.1|RSMB_MOUSE1.365e-5765.75RecName: Full=Small nuclear ribonucleoprotein-asso... [more]
gi|134037|sp|P14678.2|RSMB_HUMAN1.790e-5765.75RecName: Full=Small nuclear ribonucleoprotein-asso... [more]
gi|12643865|sp|Q9TU67.1|RSMB_ERIEU1.790e-5765.75RecName: Full=Small nuclear ribonucleoprotein-asso... [more]
gi|75056662|sp|Q58DW4.1|RSMB_BOVIN2.249e-5765.75RecName: Full=Small nuclear ribonucleoprotein-asso... [more]
gi|10720263|sp|Q9PV94.1|RSMB_CHICK8.763e-5771.23RecName: Full=Small nuclear ribonucleoprotein-asso... [more]
gi|52783793|sp|P63164.1|RSMN_RAT1.021e-5665.75RecName: Full=Small nuclear ribonucleoprotein-asso... [more]
gi|115311861|sp|Q17QN3.1|RSMN_BOVIN1.877e-5665.75RecName: Full=Small nuclear ribonucleoprotein-asso... [more]
gi|10720265|sp|Q9TU66.1|RSMB_MONDO3.029e-5664.38RecName: Full=Small nuclear ribonucleoprotein-asso... [more]

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BLAST of rna-binding protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1316132298|ref|XP_023214911.1|5.910e-7678.21small nuclear ribonucleoprotein-associated protein... [more]
gi|1059225417|ref|XP_017758257.1|7.113e-7072.90PREDICTED: small nuclear ribonucleoprotein-associa... [more]
gi|957816224|ref|XP_014665708.1|3.806e-6977.71PREDICTED: small nuclear ribonucleoprotein-associa... [more]
gi|1026567822|gb|OAD56398.1|4.466e-6972.73Small nuclear ribonucleoprotein-associated protein... [more]
gi|1233184758|ref|XP_022193986.1|2.543e-6769.93small nuclear ribonucleoprotein-associated protein... [more]
gi|1233184746|ref|XP_022193979.1|5.006e-6769.93small nuclear ribonucleoprotein-associated protein... [more]
gi|440586625|emb|CCK33034.1|3.951e-6472.44RNA-binding protein SmB [Platynereis dumerilii][more]
gi|1242810303|ref|XP_022345999.1|4.098e-6473.05small nuclear ribonucleoprotein-associated protein... [more]
gi|1228006901|ref|XP_021935361.1|6.105e-6474.52small nuclear ribonucleoprotein-associated protein... [more]
gi|585698065|ref|XP_006822502.1|6.432e-6469.59PREDICTED: small nuclear ribonucleoprotein-associa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold2255_size18018supercontigscaffold2255_size18018:10519..11064 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold2255_size18018-processed-gene-0.0-mRNA-1snap_masked-scaffold2255_size18018-processed-gene-0.0-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold2255_size18018:10519..11064+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold2255_size18018-processed-gene-0.0 ID=snap_masked-scaffold2255_size18018-processed-gene-0.0|Name=rna-binding protein|organism=Tigriopus kingsejongensis|type=gene|length=546bp|location=Sequence derived from alignment at scaffold2255_size18018:10519..11064+ (Tigriopus kingsejongensis)
ATGGTGGTCGGACGCAACAATAAGATGTCGGGCTACATCAACTACCGCAT
GCGGGTCATCCTCCAGGATTCGCGGACCTTCATCGGCACCTTCAAGGCCT
TTGACAAGCACATGAACCTGATTCTGGGCGATTGCGAAGAATTTCGCAAG
CTCAAGCCTAAGTCGGCCAAGTCCACGGAGCGCGAGGAGAAGCGCGTCTT
GGGTCTCGTCCTACTGCGCGGCGAGAACATCGTGTCCATGACGGTGGAAG
GACCGCCACCCTCGGACGAGGGCATGCCGCGTGTCCCCATCCCGGGGGCG
GGTGGACCGGGTTTGGGCCGCGCCGCTGGTCGCGGCGTACCCATGGGTGG
AGCCGCCCCTGGCCTTGCCGGACCCGTCCGCGGAGTGGGTGGACCCGCTC
CCTCGATGATGGCCCCAGGGGGCATGGCTGCCAGTGCCCCGCCCCAGATG
CGTGGCCCACCTCCGGCCGGTCGCGGTGGCCCACCGCCCAGTGGCTTTGG
TCGCGGTGGCCCACCCGGCGGTTTCGGCCGCGGCTACCCGTATTAA
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Synonyms
The feature 'rna-binding protein' has the following synonyms
Synonym
Tk05957
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