dna-directed rna polymerases i and iii subunit rpac2, snap_masked-scaffold23_size669530-processed-gene-1.6 (gene) Tigriopus kingsejongensis

Overview
Namedna-directed rna polymerases i and iii subunit rpac2
Unique Namesnap_masked-scaffold23_size669530-processed-gene-1.6
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. L. salmonis genes
Match: EMLSAG00000008459 (supercontig:LSalAtl2s:LSalAtl2s51:1311671:1338820:-1 gene:EMLSAG00000008459 transcript:EMLSAT00000008459 description:"maker-LSalAtl2s51-augustus-gene-13.14")

HSP 1 Score: 127.102 bits (318), Expect = 2.413e-35
Identity = 57/82 (69.51%), Postives = 66/82 (80.49%), Query Frame = 0 
Query:   43 KRKLVMLASAEAHSENCRTFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLK 124
            +R+LVM+A      E CRTF+FKGE+HTLGNAL+ VILQNP V FCGYS PHPAEDQM LRIQTV + PAQ+ LK+GL DLK
Sbjct:    5 QRRLVMMAGDGESGEXCRTFVFKGENHTLGNALRTVILQNPEVIFCGYSXPHPAEDQMLLRIQTVNSSPAQEALKKGLEDLK 86
[Close]
BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. L. salmonis genes
Match: EMLSAG00000012196 (supercontig:LSalAtl2s:LSalAtl2s881:209726:210574:1 gene:EMLSAG00000012196 transcript:EMLSAT00000012196 description:"maker-LSalAtl2s881-augustus-gene-1.33")

HSP 1 Score: 65.0846 bits (157), Expect = 8.361e-15
Identity = 30/83 (36.14%), Postives = 46/83 (55.42%), Query Frame = 0 
Query:   58 NCRTFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNRAVQK 140
            N   F    E HTLGN +++ +L++P V F GY  PHP E+++ LRIQT ++    D L   + DL +   +    F  AV++
Sbjct:   29 NASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDALMNAITDLISELSLFEESFKDAVRE 111
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BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. SwissProt
Match: gi|74869335|sp|Q9VIZ0.1|RPAC2_DROME (RecName: Full=Probable DNA-directed RNA polymerases I and III subunit RPAC2; Short=RNA polymerases I and III subunit AC2; AltName: Full=AC19; AltName: Full=DNA-directed RNA polymerase I subunit D)

HSP 1 Score: 96.6709 bits (239), Expect = 8.609e-26
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 0 
Query:   46 LVMLASAEAHSENCRTFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNRAVQKFEA 143
            L  LA  E + E  RTF+F  E HTLGNALK +I + P V FCGY+IPHP E ++  RIQ+  +  A D+LK+GL DL+ +C  T   F + + +F A
Sbjct:    4 LAELAGDEKNGEGSRTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRD-RAIDILKRGLEDLEGLCDHTIVTFEKEMAEFNA 100
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BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. SwissProt
Match: gi|133371|sp|P28000.1|RPAC2_YEAST (RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2; Short=RNA polymerases I and III subunit AC2; AltName: Full=AC19; AltName: Full=DNA-directed RNA polymerases I and III 16 kDa polypeptide; AltName: Full=RPA19)

HSP 1 Score: 96.6709 bits (239), Expect = 2.497e-25
Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = 0 
Query:   43 KRKLVMLASAEAHSENCRTFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNRAVQKF 141
            + K+ +L  A +      +F    E HTLGNAL+ VI++NP V FCGYSIPHP+E+ + +RIQT     A D L++GL DL  +C +  SKF   ++  
Sbjct:   44 REKIKLLTQATSEDGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVESKFTEKIKSM 142
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BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. SwissProt
Match: gi|74851461|sp|Q54ES6.1|RPC19_DICDI (RecName: Full=DNA-directed RNA polymerases I and III subunit rpc19)

HSP 1 Score: 95.5153 bits (236), Expect = 3.589e-25
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 0 
Query:   58 NCRTFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNRAVQK 140
            +C TFIF  E HTLGNAL  V+++NP V F GYSIPHP++++M LRIQT +N+ AQ+ L QGL D+K I       FN A+ +
Sbjct:   34 DCATFIFTDEDHTLGNALHYVLMKNPKVDFSGYSIPHPSDNRMNLRIQTKSNITAQESLLQGLTDIKDISRHIFETFNNALDQ 116
[Close]
BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. SwissProt
Match: gi|82180681|sp|Q5XK67.1|RPAC2_XENLA (RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2; Short=RNA polymerases I and III subunit AC2; AltName: Full=AC19; AltName: Full=DNA-directed RNA polymerase I subunit D)

HSP 1 Score: 90.1225 bits (222), Expect = 3.663e-23
Identity = 36/101 (35.64%), Postives = 66/101 (65.35%), Query Frame = 0 
Query:   41 TPKRKLVMLASAEAHSENCRTFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNRAVQKF 141
            T ++  + +  A+ + E+C TF+   E HTLGN+L+ ++++NP V FCGYSI HP+E ++  RIQT   +PA +  ++GL++L  +C    + F  +++++
Sbjct:    5 TERKTTLEMVQAQGNEESCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQTRNGIPAVEPFRRGLNELVDVCQHVLNTFETSIKEY 105
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BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. SwissProt
Match: gi|2500635|sp|Q09177.1|RPAC2_SCHPO (RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2; Short=RNA polymerases I and III subunit AC2; AltName: Full=AC19; AltName: Full=DNA-directed RNA polymerases I and III 14 kDa polypeptide)

HSP 1 Score: 90.1225 bits (222), Expect = 5.385e-23
Identity = 40/76 (52.63%), Postives = 51/76 (67.11%), Query Frame = 0 
Query:   61 TFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNR 136
            TF  + E HTLGN+L+ VI++NP V FCGYSIPHP+E +M  RIQT  +  A DVL++GL DL  +C     KF  
Sbjct:   36 TFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLRKGLDDLIDLCDAVTEKFTE 111
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BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. SwissProt
Match: gi|122143797|sp|Q1RMG8.1|RPAC2_BOVIN (RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2; Short=RNA polymerases I and III subunit AC2; AltName: Full=DNA-directed RNA polymerase I subunit D)

HSP 1 Score: 85.5001 bits (210), Expect = 4.682e-21
Identity = 40/103 (38.83%), Postives = 63/103 (61.17%), Query Frame = 0 
Query:   39 EATPKRKLVMLASAEAHSENCRTFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNRAVQKF 141
            E   K  L M+ +A     +C TF+   E HTLGN+L+ +I++NP V FCGY+  HP+E ++ LRIQT   +PA +  ++GL DL  +C     KF  +++++
Sbjct:   20 EGERKTALEMVQAA-GTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQRGLTDLMNVCQHVLDKFEASIKEY 121
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BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. SwissProt
Match: gi|1279751559|sp|P0DPB6.1|RPAC2_HUMAN (RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2; Short=RNA polymerases I and III subunit AC2; AltName: Full=AC19; AltName: Full=DNA-directed RNA polymerase I subunit D; AltName: Full=RNA polymerase I 16 kDa subunit; Short=RPA16; AltName: Full=RPC16; AltName: Full=hRPA19)

HSP 1 Score: 84.7297 bits (208), Expect = 9.554e-21
Identity = 39/103 (37.86%), Postives = 63/103 (61.17%), Query Frame = 0 
Query:   39 EATPKRKLVMLASAEAHSENCRTFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNRAVQKF 141
            E   K  L M+ +A     +C TF+   E HTLGN+L+ +I++NP V FCGY+  HP+E ++ LRIQT   +PA +  ++GL++L  +C     KF  +++ +
Sbjct:   20 EGERKTALEMVQAA-GTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKDY 121
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BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. SwissProt
Match: gi|11387094|sp|P97304.1|RPAC2_MOUSE (RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2; Short=RNA polymerases I and III subunit AC2; AltName: Full=AC19; AltName: Full=DNA-directed RNA polymerase I subunit D; AltName: Full=RNA polymerase I 16 kDa subunit; Short=RPA16)

HSP 1 Score: 83.9593 bits (206), Expect = 1.504e-20
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 0 
Query:   39 EATPKRKLVMLASAEAHSENCRTFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNRAVQKFEA 143
            E   K  L M+ +A      C TF+   E HTLGN L+ +I++NP V FCGY+  HP+E ++ LRIQT   +PA +  ++GL++L  +C     KF  +++ ++A
Sbjct:   20 EGERKTALEMVQAA-GTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQKGLNELLNVCQHVLVKFEASIKDYKA 123
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BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. SwissProt
Match: gi|82173244|sp|Q6DRI4.1|RPAC2_DANRE (RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2; Short=RNA polymerases I and III subunit AC2; AltName: Full=AC19; AltName: Full=DNA-directed RNA polymerase I subunit D)

HSP 1 Score: 82.8037 bits (203), Expect = 3.389e-20
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 0 
Query:   49 LASAEAHSENCRTFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNRAVQKF 141
            +   +   E C TF+   E HTLGN+L+ +I+++  V FCGYSI HP+E ++  RIQT   VPA + L+ GL++L  +C      F   +++F
Sbjct:   12 MVRTDGADEGCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEPLRNGLNNLTDVCKHVLQTFEARMKEF 104
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BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. SwissProt
Match: gi|74846694|sp|Q61IX2.1|RPAC2_CAEBR (RecName: Full=Probable DNA-directed RNA polymerases I and III subunit RPAC2; Short=RNA polymerases I and III subunit AC2; AltName: Full=AC19; AltName: Full=DNA-directed RNA polymerase I subunit D)

HSP 1 Score: 71.2478 bits (173), Expect = 1.830e-15
Identity = 29/80 (36.25%), Postives = 48/80 (60.00%), Query Frame = 0 
Query:   61 TFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNRAVQK 140
            T I   E HT+GN++K+++ +   V FCGY++PHP ED++  R+QT   + A +VL +    ++ +    R KF  A +K
Sbjct:   63 TLILYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALEVLVKAFESVEQVFSTIRGKFEAAYEK 142
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BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. nr
Match: gi|225709232|gb|ACO10462.1| (DNA-directed RNA polymerases I and III subunit RPAC2 [Caligus rogercresseyi])

HSP 1 Score: 148.288 bits (373), Expect = 1.167e-43
Identity = 66/98 (67.35%), Postives = 79/98 (80.61%), Query Frame = 0 
Query:   41 TPKRKLVMLASAEAHSENCRTFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNRAV 138
            T  R+LVM+A      E+CRTFIFKGE+HTLGNAL++VILQNP V FCGYSIPHPAEDQM LRIQTV++VP QD L++GL DLK +C +  SKFN A+
Sbjct:    3 TSTRRLVMVAGDGESGESCRTFIFKGENHTLGNALRSVILQNPDVLFCGYSIPHPAEDQMLLRIQTVSSVPTQDALRRGLEDLKDMCSVVSSKFNSAL 100
[Close]
BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. nr
Match: gi|225709920|gb|ACO10806.1| (DNA-directed RNA polymerases I and III subunit RPAC2 [Caligus rogercresseyi])

HSP 1 Score: 146.747 bits (369), Expect = 4.293e-43
Identity = 67/98 (68.37%), Postives = 80/98 (81.63%), Query Frame = 0 
Query:   41 TPKRKLVMLASAEAHSENCRTFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNRAV 138
            T  R+LVM+A      E+CRTFIFKGE+HTLGNAL++VILQNP V FCGYSIPHPAEDQM LRIQTV++VPAQD L++GL DLK +C +  SKFN A+
Sbjct:    3 TSTRRLVMVAGDGESGESCRTFIFKGENHTLGNALRSVILQNPDVLFCGYSIPHPAEDQMPLRIQTVSSVPAQDALRRGLEDLKDMCSVVSSKFNSAL 100
[Close]
BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. nr
Match: gi|667834186|ref|XP_007781262.1| (hypothetical protein W97_05187 [Coniosporium apollinis CBS 100218] >gi|494829254|gb|EON65945.1| hypothetical protein W97_05187 [Coniosporium apollinis CBS 100218])

HSP 1 Score: 110.538 bits (275), Expect = 3.583e-28
Identity = 58/135 (42.96%), Postives = 79/135 (58.52%), Query Frame = 0 
Query:    9 PTYHRQVAPAAHQADPLTGPPSAATPFQPREATPKRKLVMLASAEAHSENCRTFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNRAVQKFEA 143
            PT H Q        +P+  P  A +P      T K ++ +L  AE   +   +F F+ E HTLGNAL+ +I++NP+V FCGYSIPHP+E++M LRIQT  NV   DVL++GL DL  +C +   KF  A   F A
Sbjct:   17 PTDHTQ----QDGPEPVEAPSPAGSPGSEAYETEKPRIRVLPGAE---DTAASFEFEKEDHTLGNALRYIIMKNPSVEFCGYSIPHPSEERMNLRIQTYDNVSVYDVLEKGLDDLMDLCDVVMEKFTVARDDFNA 144
[Close]
BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. nr
Match: gi|972172168|ref|XP_015190621.1| (PREDICTED: probable DNA-directed RNA polymerases I and III subunit RPAC2 [Polistes dominula])

HSP 1 Score: 108.612 bits (270), Expect = 5.874e-28
Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 0 
Query:   45 KLVMLASAEAHSENCRTFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNRAVQKFEA 143
            +LV+LA  + H E  RTFIF  E HTLGNAL+N+I   P V+FCGY++PHPAE+++  RIQT     A D+LK+GL DL+ IC  T   FN A +++++
Sbjct:    3 RLVVLAGDQVHGEQSRTFIFLNEGHTLGNALQNIIAHYPEVTFCGYTVPHPAENKINFRIQTKTG-RATDILKRGLQDLEKICDHTLEVFNEAYKQYKS 100
[Close]
BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. nr
Match: gi|668461548|gb|KFB49101.1| (AGAP009644-PA-like protein [Anopheles sinensis])

HSP 1 Score: 106.301 bits (264), Expect = 3.673e-27
Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = 0 
Query:   45 KLVMLASAEAHSENCRTFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNRAVQKF 141
            KL  LA  E   E+ RTF+F+ E HTLGN LK++I + P V+FCGY++PHPAE++M  RIQ V  V A DVL++GL DL+ +C  T   F  AV ++
Sbjct:    3 KLAELAGDENSGESSRTFVFEDEGHTLGNVLKSIICKYPDVNFCGYTVPHPAENKMHFRIQAVGKVRAIDVLRRGLADLERVCDHTIETFEAAVAEY 99
[Close]
BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. nr
Match: gi|526200589|gb|EPS41213.1| (hypothetical protein H072_4935 [Dactylellina haptotyla CBS 200.50])

HSP 1 Score: 107.457 bits (267), Expect = 4.017e-27
Identity = 56/145 (38.62%), Postives = 82/145 (56.55%), Query Frame = 0 
Query:    1 MSYEEILP--PTYHRQVAPAAHQADPLTGPPSAATPFQPREATPKR--KLVMLASAEAHSENCRTFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNRAVQKF 141
            M+  E LP  P Y  + A      D            +P + T +   K++ML SA    ++C +F F+ E HTLGNAL+ +I++NP V FCGYSIPHP+E +M +RIQT  ++ A+D L QGL DL+ +C +    F    ++F
Sbjct:    1 MADNETLPDAPEYDNEAAGDVDYDDD-----------EPLDLTRENNAKIIMLGSA-TDDDSCASFQFENEDHTLGNALRWIIMKNPKVEFCGYSIPHPSEPKMNMRIQTYGDITAKDALIQGLADLRDLCDVVTDTFVAEKERF 133
[Close]
BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. nr
Match: gi|957831679|ref|XP_014665829.1| (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2-like [Priapulus caudatus])

HSP 1 Score: 106.686 bits (265), Expect = 4.541e-27
Identity = 49/98 (50.00%), Postives = 65/98 (66.33%), Query Frame = 0 
Query:   43 KRKLVMLASAEAHSENCRTFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNRAVQK 140
            KR L +L   +A  E CRTF+  GE HTLGN+L+ ++++NP V FCGY++PHP+ED++  RIQT    PA DVL+QGL DL   C    + F  AV K
Sbjct:    7 KRILEVLQLDDAKDETCRTFVMHGEDHTLGNSLRYMVMKNPVVEFCGYNVPHPSEDKINFRIQTKTQ-PAVDVLRQGLRDLSGACEHILATFEEAVDK 103
[Close]
BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. nr
Match: gi|954545909|ref|XP_014615444.1| (PREDICTED: probable DNA-directed RNA polymerases I and III subunit RPAC2 [Polistes canadensis])

HSP 1 Score: 105.916 bits (263), Expect = 6.254e-27
Identity = 49/99 (49.49%), Postives = 67/99 (67.68%), Query Frame = 0 
Query:   45 KLVMLASAEAHSENCRTFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNRAVQKFEA 143
            +LV+LA  + H E  RTFIF  E HTLGNAL+N+I Q   V+FCGY++PHPAE+++  RIQT     A DVLK+GL DL+  C  T   FN+  +++ +
Sbjct:    3 RLVVLAGDQVHGEKSRTFIFSNEGHTLGNALQNIITQYAEVTFCGYTVPHPAENKINFRIQTKTG-RATDVLKRGLQDLEKACDHTLEVFNQTYKQYRS 100
[Close]
BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. nr
Match: gi|118790581|ref|XP_318678.2| (AGAP009644-PA [Anopheles gambiae str. PEST] >gi|116118014|gb|EAA14103.3| AGAP009644-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 105.531 bits (262), Expect = 8.165e-27
Identity = 48/97 (49.48%), Postives = 65/97 (67.01%), Query Frame = 0 
Query:   45 KLVMLASAEAHSENCRTFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNRAVQKF 141
            KL  L   E   E+ RTF+F+ E HTLGN LK++I + P V+FCGY++PHPAE++M  RIQ   +V A DVL++GL DL+ +C  T   F  AV K+
Sbjct:    3 KLAELTGDENSGESSRTFVFEDEGHTLGNVLKSIICKYPDVNFCGYTVPHPAENKMHFRIQAAKSVRAIDVLRRGLEDLERVCDHTIDTFEAAVAKY 99
[Close]
BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. nr
Match: gi|748528365|ref|XP_011128042.1| (hypothetical protein AOL_s00215g538 [Arthrobotrys oligospora ATCC 24927] >gi|345560677|gb|EGX43802.1| hypothetical protein AOL_s00215g538 [Arthrobotrys oligospora ATCC 24927])

HSP 1 Score: 106.301 bits (264), Expect = 1.249e-26
Identity = 46/99 (46.46%), Postives = 68/99 (68.69%), Query Frame = 0 
Query:   45 KLVMLASAEAHSENCRTFIFKGESHTLGNALKNVILQNPAVSFCGYSIPHPAEDQMFLRIQTVANVPAQDVLKQGLHDLKAICGITRSKFNRAVQKFEA 143
            K++ML +A    ++C +F F+ E HTLGNAL+ +I++NP V FCGYSIPHP+E +M +RIQT   + A+D L +GL DL+ +C +   KF    ++F A
Sbjct:   40 KIIMLGTA-TDDDSCASFQFENEDHTLGNALRWIIMKNPQVEFCGYSIPHPSETKMNMRIQTYGEITAKDALIKGLADLRDLCDVVTDKFIAEKERFVA 137
The following BLAST results are available for this feature:
BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAG000000084592.413e-3569.51supercontig:LSalAtl2s:LSalAtl2s51:1311671:1338820:... [more]
EMLSAG000000121968.361e-1536.14supercontig:LSalAtl2s:LSalAtl2s881:209726:210574:1... [more]
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BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
gi|74869335|sp|Q9VIZ0.1|RPAC2_DROME8.609e-2646.94RecName: Full=Probable DNA-directed RNA polymerase... [more]
gi|133371|sp|P28000.1|RPAC2_YEAST2.497e-2542.42RecName: Full=DNA-directed RNA polymerases I and I... [more]
gi|74851461|sp|Q54ES6.1|RPC19_DICDI3.589e-2553.01RecName: Full=DNA-directed RNA polymerases I and I... [more]
gi|82180681|sp|Q5XK67.1|RPAC2_XENLA3.663e-2335.64RecName: Full=DNA-directed RNA polymerases I and I... [more]
gi|2500635|sp|Q09177.1|RPAC2_SCHPO5.385e-2352.63RecName: Full=DNA-directed RNA polymerases I and I... [more]
gi|122143797|sp|Q1RMG8.1|RPAC2_BOVIN4.682e-2138.83RecName: Full=DNA-directed RNA polymerases I and I... [more]
gi|1279751559|sp|P0DPB6.1|RPAC2_HUMAN9.554e-2137.86RecName: Full=DNA-directed RNA polymerases I and I... [more]
gi|11387094|sp|P97304.1|RPAC2_MOUSE1.504e-2038.10RecName: Full=DNA-directed RNA polymerases I and I... [more]
gi|82173244|sp|Q6DRI4.1|RPAC2_DANRE3.389e-2038.71RecName: Full=DNA-directed RNA polymerases I and I... [more]
gi|74846694|sp|Q61IX2.1|RPAC2_CAEBR1.830e-1536.25RecName: Full=Probable DNA-directed RNA polymerase... [more]

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BLAST of dna-directed rna polymerases i and iii subunit rpac2 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|225709232|gb|ACO10462.1|1.167e-4367.35DNA-directed RNA polymerases I and III subunit RPA... [more]
gi|225709920|gb|ACO10806.1|4.293e-4368.37DNA-directed RNA polymerases I and III subunit RPA... [more]
gi|667834186|ref|XP_007781262.1|3.583e-2842.96hypothetical protein W97_05187 [Coniosporium apoll... [more]
gi|972172168|ref|XP_015190621.1|5.874e-2850.51PREDICTED: probable DNA-directed RNA polymerases I... [more]
gi|668461548|gb|KFB49101.1|3.673e-2750.52AGAP009644-PA-like protein [Anopheles sinensis][more]
gi|526200589|gb|EPS41213.1|4.017e-2738.62hypothetical protein H072_4935 [Dactylellina hapto... [more]
gi|957831679|ref|XP_014665829.1|4.541e-2750.00PREDICTED: DNA-directed RNA polymerases I and III ... [more]
gi|954545909|ref|XP_014615444.1|6.254e-2749.49PREDICTED: probable DNA-directed RNA polymerases I... [more]
gi|118790581|ref|XP_318678.2|8.165e-2749.48AGAP009644-PA [Anopheles gambiae str. PEST] >gi|11... [more]
gi|748528365|ref|XP_011128042.1|1.249e-2646.46hypothetical protein AOL_s00215g538 [Arthrobotrys ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold23_size669530supercontigscaffold23_size669530:123333..123764 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:DNA-directed RNA polymerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold23_size669530-processed-gene-1.6-mRNA-1snap_masked-scaffold23_size669530-processed-gene-1.6-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold23_size669530:123333..123764+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold23_size669530-processed-gene-1.6 ID=snap_masked-scaffold23_size669530-processed-gene-1.6|Name=dna-directed rna polymerases i and iii subunit rpac2|organism=Tigriopus kingsejongensis|type=gene|length=432bp|location=Sequence derived from alignment at scaffold23_size669530:123333..123764+ (Tigriopus kingsejongensis)
ATGAGTTACGAGGAGATCCTGCCCCCGACCTATCACCGGCAAGTGGCGCC
GGCCGCGCACCAGGCGGATCCGTTGACGGGCCCGCCCTCGGCCGCCACGC
CCTTTCAGCCGCGGGAGGCCACGCCCAAGCGCAAACTGGTGATGCTGGCC
TCGGCCGAGGCCCACTCCGAGAATTGCCGCACCTTCATCTTCAAGGGCGA
GTCGCACACCTTGGGCAACGCCCTCAAGAACGTGATCCTCCAGAATCCGG
CCGTCAGCTTCTGCGGCTACTCCATCCCGCATCCGGCCGAGGATCAGATG
TTCCTGCGGATCCAGACCGTGGCCAATGTGCCCGCCCAGGACGTGCTCAA
GCAGGGTCTGCACGATCTCAAGGCCATTTGCGGCATCACGCGCAGCAAGT
TCAACCGGGCCGTCCAGAAGTTCGAGGCCTAG
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Synonyms
The feature 'dna-directed rna polymerases i and iii subunit rpac2' has the following synonyms
Synonym
Tk11055
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