dna polymerase iv, snap_masked-scaffold2710_size13019-processed-gene-0.0 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of dna polymerase iv vs. L. salmonis genes
Match: EMLSAG00000004221 (supercontig:LSalAtl2s:LSalAtl2s222:1005909:1009023:-1 gene:EMLSAG00000004221 transcript:EMLSAT00000004221 description:"maker-LSalAtl2s222-snap-gene-10.41") HSP 1 Score: 66.2402 bits (160), Expect = 5.121e-15 Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 0
Query: 9 IAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQ--DVQGVIDELPLEKIPGVG 72
+AE+IR++I++ LTASAG+A LAK SD NKPNGQF + P ++ + +LP+ K+ G+G
Sbjct: 208 VAETIRQEIYDATGLTASAGIASNALLAKXCSDQNKPNGQFYLKPNRDEIMNFVGKLPVRKVGGIG 273
BLAST of dna polymerase iv vs. L. salmonis genes
Match: EMLSAG00000001261 (supercontig:LSalAtl2s:LSalAtl2s1206:20447:25140:1 gene:EMLSAG00000001261 transcript:EMLSAT00000001261 description:"augustus_masked-LSalAtl2s1206-processed-gene-0.2") HSP 1 Score: 45.8246 bits (107), Expect = 9.474e-8 Identity = 23/64 (35.94%), Postives = 37/64 (57.81%), Query Frame = 0
Query: 9 IAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 72
I E +R ++ + SAG+A K LAK++ ++KPN Q V+P V + +L L K+ G+G
Sbjct: 171 IMEQVREAVFEKTGFRCSAGIAHNKILAKISCGLHKPNQQTVLPHSSVPILYSKLKLTKLRGLG 234
BLAST of dna polymerase iv vs. SwissProt
Match: gi|33301083|sp|Q8DBI7.2|DPO4_VIBVU (RecName: Full=DNA polymerase IV; Short=Pol IV >gi|71151855|sp|Q7MID6.2|DPO4_VIBVY RecName: Full=DNA polymerase IV; Short=Pol IV) HSP 1 Score: 139.813 bits (351), Expect = 3.957e-41 Identity = 64/71 (90.14%), Postives = 67/71 (94.37%), Query Frame = 0
Query: 2 CHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 72
CHGSATLIAE+IRRDIWNEL LTASAGVAPIKFLAKVASDMNKPNGQFVIPP+ VQ VID LPL+KIPGVG
Sbjct: 119 CHGSATLIAEAIRRDIWNELQLTASAGVAPIKFLAKVASDMNKPNGQFVIPPEQVQSVIDTLPLQKIPGVG 189
BLAST of dna polymerase iv vs. SwissProt
Match: gi|33301073|sp|Q87MB4.1|DPO4_VIBPA (RecName: Full=DNA polymerase IV; Short=Pol IV) HSP 1 Score: 129.798 bits (325), Expect = 3.132e-37 Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 0
Query: 2 CHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 72
C GSATLIAESIR DI NEL LTASAG+APIKFLAKVASDMNKPNGQFVIPP+ VQ V+D+LPLEKIPGVG
Sbjct: 119 CRGSATLIAESIRNDIRNELGLTASAGIAPIKFLAKVASDMNKPNGQFVIPPEKVQEVVDKLPLEKIPGVG 189
BLAST of dna polymerase iv vs. SwissProt
Match: gi|189044618|sp|A5F5Y1.1|DPO4_VIBC3 (RecName: Full=DNA polymerase IV; Short=Pol IV) HSP 1 Score: 120.553 bits (301), Expect = 1.290e-33 Identity = 55/70 (78.57%), Postives = 62/70 (88.57%), Query Frame = 0
Query: 3 HGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 72
GSATLIA++IRRDIW ELNLTASAGVAPIKFLAKVASD+NKPNG +V+ P VQ ++D LPLEKIPGVG
Sbjct: 120 QGSATLIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPNGLYVVTPDKVQEMVDSLPLEKIPGVG 189
BLAST of dna polymerase iv vs. SwissProt
Match: gi|22095641|sp|Q9KPS5.1|DPO4_VIBCH (RecName: Full=DNA polymerase IV; Short=Pol IV >gi|254781925|sp|C3LQ59.1|DPO4_VIBCM RecName: Full=DNA polymerase IV; Short=Pol IV) HSP 1 Score: 118.627 bits (296), Expect = 6.420e-33 Identity = 54/70 (77.14%), Postives = 62/70 (88.57%), Query Frame = 0
Query: 3 HGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 72
GSATLIA++IRRDIW ELNLTASAGVAPIKFLAKVASD+NKP+G +V+ P VQ ++D LPLEKIPGVG
Sbjct: 120 QGSATLIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEKIPGVG 189
BLAST of dna polymerase iv vs. SwissProt
Match: gi|81723732|sp|Q83M86.1|DPO4_SHIFL (RecName: Full=DNA polymerase IV; Short=Pol IV) HSP 1 Score: 116.701 bits (291), Expect = 2.904e-32 Identity = 54/71 (76.06%), Postives = 61/71 (85.92%), Query Frame = 0
Query: 2 CHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 72
CHGSATLIA+ IR+ I+NEL LTASAGVAP+KFLAK+ASDMNKPNGQFVI P +V + LPLEKIPGVG
Sbjct: 115 CHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLEKIPGVG 185
BLAST of dna polymerase iv vs. SwissProt
Match: gi|22095606|sp|P58963.1|DPO4_ESCFE (RecName: Full=DNA polymerase IV; Short=Pol IV) HSP 1 Score: 115.161 bits (287), Expect = 8.616e-32 Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 0
Query: 2 CHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 72
CHGSATLIA+ IR+ I+NEL LTASAG+AP+KFLAK+ASDMNKPNGQFVI P DV + LPL KIPGVG
Sbjct: 104 CHGSATLIAQEIRQTIFNELQLTASAGIAPVKFLAKIASDMNKPNGQFVITPADVPAFLQTLPLAKIPGVG 174
BLAST of dna polymerase iv vs. SwissProt
Match: gi|226738240|sp|B2U3S3.1|DPO4_SHIB3 (RecName: Full=DNA polymerase IV; Short=Pol IV) HSP 1 Score: 114.39 bits (285), Expect = 2.146e-31 Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 0
Query: 2 CHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 72
CHGSATLIA+ IR+ I+NEL LTASAGVAP+KFLAK+ASDMNKPNGQFVI P +V + LPL KIPGVG
Sbjct: 118 CHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVG 188
BLAST of dna polymerase iv vs. SwissProt
Match: gi|122424895|sp|Q1RFU0.1|DPO4_ECOUT (RecName: Full=DNA polymerase IV; Short=Pol IV >gi|122958567|sp|Q0TL85.1|DPO4_ECOL5 RecName: Full=DNA polymerase IV; Short=Pol IV >gi|189027664|sp|A1A7U2.1|DPO4_ECOK1 RecName: Full=DNA polymerase IV; Short=Pol IV) HSP 1 Score: 114.39 bits (285), Expect = 2.203e-31 Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 0
Query: 2 CHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 72
CHGSATLIA+ IR+ I+NEL LTASAGVAP+KFLAK+ASDMNKPNGQFVI P +V + LPL KIPGVG
Sbjct: 115 CHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVG 185
BLAST of dna polymerase iv vs. SwissProt
Match: gi|2501652|sp|Q47155.1|DPO4_ECOLI (RecName: Full=DNA polymerase IV; Short=Pol IV; AltName: Full=Translesion synthesis polymerase IV; Short=TSL polymerase IV >gi|123617967|sp|Q3Z5A4.1|DPO4_SHISS RecName: Full=DNA polymerase IV; Short=Pol IV >gi|189027665|sp|B1J100.1|DPO4_ECOLC RecName: Full=DNA polymerase IV; Short=Pol IV) HSP 1 Score: 114.39 bits (285), Expect = 2.346e-31 Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 0
Query: 2 CHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 72
CHGSATLIA+ IR+ I+NEL LTASAGVAP+KFLAK+ASDMNKPNGQFVI P +V + LPL KIPGVG
Sbjct: 115 CHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVG 185
BLAST of dna polymerase iv vs. SwissProt
Match: gi|29427651|sp|P59477.1|DPO4_ECOL6 (RecName: Full=DNA polymerase IV; Short=Pol IV) HSP 1 Score: 114.39 bits (285), Expect = 2.371e-31 Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 0
Query: 2 CHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 72
CHGSATLIA+ IR+ I+NEL LTASAGVAP+KFLAK+ASDMNKPNGQFVI P +V + LPL KIPGVG
Sbjct: 115 CHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVG 185
BLAST of dna polymerase iv vs. nr
Match: gi|515641618|ref|WP_017074218.1| (DNA polymerase IV [Vibrio splendidus] >gi|1067289792|gb|OED69040.1| DNA polymerase IV [Vibrio splendidus ZS-139]) HSP 1 Score: 155.221 bits (391), Expect = 1.436e-44 Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0
Query: 1 LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 72
LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG
Sbjct: 122 LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 193
BLAST of dna polymerase iv vs. nr
Match: gi|1330682259|ref|WP_102551512.1| (DNA polymerase IV [Vibrio splendidus] >gi|1327093233|gb|PMM60699.1| DNA polymerase IV [Vibrio splendidus]) HSP 1 Score: 154.451 bits (389), Expect = 1.460e-44 Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0
Query: 1 LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 72
LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG
Sbjct: 97 LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 168
BLAST of dna polymerase iv vs. nr
Match: gi|1330207904|ref|WP_102381670.1| (DNA polymerase IV [Vibrio lentus] >gi|1326669904|gb|PMI56274.1| DNA polymerase IV [Vibrio lentus]) HSP 1 Score: 151.369 bits (381), Expect = 5.221e-43 Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0
Query: 1 LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 72
LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQ VID+LPLEKIPGVG
Sbjct: 120 LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQAVIDDLPLEKIPGVG 191
BLAST of dna polymerase iv vs. nr
Match: gi|1330032541|ref|WP_102285234.1| (DNA polymerase IV [Vibrio lentus] >gi|1326481819|gb|PMG78361.1| DNA polymerase IV [Vibrio lentus]) HSP 1 Score: 151.369 bits (381), Expect = 5.397e-43 Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0
Query: 1 LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 72
LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQ VID+LPLEKIPGVG
Sbjct: 122 LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQAVIDDLPLEKIPGVG 193
BLAST of dna polymerase iv vs. nr
Match: gi|515671842|ref|WP_017104442.1| (MULTISPECIES: DNA polymerase IV [Vibrio] >gi|1045785557|gb|OCH63740.1| DNA polymerase IV [Vibrio lentus] >gi|1326246187|gb|PME52834.1| DNA polymerase IV [Vibrio lentus] >gi|1326250235|gb|PME56433.1| DNA polymerase IV [Vibrio lentus] >gi|1326276739|gb|PME82062.1| DNA polymerase IV [Vibrio lentus] >gi|1326600990|gb|PMH92064.1| DNA polymerase IV [Vibrio lentus] >gi|1326618126|gb|PMI08138.1| DNA polymerase IV [Vibrio lentus] >gi|1326673288|gb|PMI59180.1| DNA polymerase IV [Vibrio lentus] >gi|1326722842|gb|PMJ03652.1| DNA polymerase IV [Vibrio lentus] >gi|1326735996|gb|PMJ16319.1| DNA polymerase IV [Vibrio lentus] >gi|1326906948|gb|PMK81119.1| DNA polymerase IV [Vibrio lentus]) HSP 1 Score: 150.984 bits (380), Expect = 5.880e-43 Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0
Query: 1 LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 72
LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQ VID+LPLEKIPGVG
Sbjct: 122 LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQAVIDDLPLEKIPGVG 193
BLAST of dna polymerase iv vs. nr
Match: gi|1330257267|ref|WP_102414172.1| (DNA polymerase IV [Vibrio lentus] >gi|1326703792|gb|PMI86430.1| DNA polymerase IV [Vibrio lentus]) HSP 1 Score: 150.984 bits (380), Expect = 5.944e-43 Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0
Query: 1 LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 72
LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQ VID+LPLEKIPGVG
Sbjct: 122 LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQAVIDDLPLEKIPGVG 193
BLAST of dna polymerase iv vs. nr
Match: gi|1040490761|ref|WP_065113493.1| (DNA polymerase IV [Vibrio tasmaniensis] >gi|1040419786|gb|OBS93380.1| DNA polymerase IV [Vibrio tasmaniensis]) HSP 1 Score: 150.984 bits (380), Expect = 5.944e-43 Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0
Query: 1 LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 72
LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQ VID+LPLEKIPGVG
Sbjct: 122 LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQAVIDDLPLEKIPGVG 193
BLAST of dna polymerase iv vs. nr
Match: gi|1330175067|ref|WP_102352994.1| (DNA polymerase IV [Vibrio lentus] >gi|1326531919|gb|PMH27033.1| DNA polymerase IV [Vibrio lentus] >gi|1326607947|gb|PMH98309.1| DNA polymerase IV [Vibrio lentus] >gi|1326786976|gb|PMJ65279.1| DNA polymerase IV [Vibrio lentus] >gi|1326892764|gb|PMK67241.1| DNA polymerase IV [Vibrio lentus] >gi|1327090599|gb|PMM58082.1| DNA polymerase IV [Vibrio lentus] >gi|1327094959|gb|PMM62386.1| DNA polymerase IV [Vibrio lentus]) HSP 1 Score: 150.984 bits (380), Expect = 6.546e-43 Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0
Query: 1 LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 72
LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQ VID+LPLEKIPGVG
Sbjct: 122 LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQAVIDDLPLEKIPGVG 193
BLAST of dna polymerase iv vs. nr
Match: gi|1330671310|ref|WP_102542658.1| (DNA polymerase IV [Vibrio lentus] >gi|1326449030|gb|PMG46677.1| DNA polymerase IV [Vibrio lentus]) HSP 1 Score: 150.984 bits (380), Expect = 6.546e-43 Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0
Query: 1 LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 72
LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQ VID+LPLEKIPGVG
Sbjct: 122 LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQAVIDDLPLEKIPGVG 193
BLAST of dna polymerase iv vs. nr
Match: gi|515677601|ref|WP_017110201.1| (MULTISPECIES: DNA polymerase IV [Vibrio] >gi|1040447785|gb|OBT20863.1| DNA polymerase IV [Vibrio tasmaniensis] >gi|1067287378|gb|OED66653.1| DNA polymerase IV [Vibrio tasmaniensis ZS-17] >gi|1135580419|gb|OMO27041.1| DNA polymerase IV [Vibrio lentus] >gi|1269362863|gb|PHN84093.1| DNA polymerase IV [Vibrio splendidus] >gi|1326712501|gb|PMI94021.1| DNA polymerase IV [Vibrio lentus] >gi|1326723967|gb|PMJ04744.1| DNA polymerase IV [Vibrio lentus] >gi|1326934671|gb|PML08211.1| DNA polymerase IV [Vibrio lentus] >gi|1327147307|gb|PMN13255.1| DNA polymerase IV [Vibrio lentus]) HSP 1 Score: 150.984 bits (380), Expect = 6.546e-43 Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0
Query: 1 LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQGVIDELPLEKIPGVG 72
LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQ VID+LPLEKIPGVG
Sbjct: 122 LCHGSATLIAESIRRDIWNELNLTASAGVAPIKFLAKVASDMNKPNGQFVIPPQDVQAVIDDLPLEKIPGVG 193 The following BLAST results are available for this feature:
BLAST of dna polymerase iv vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 2
BLAST of dna polymerase iv vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of dna polymerase iv vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold2710_size13019:3428..3651+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold2710_size13019-processed-gene-0.0 ID=snap_masked-scaffold2710_size13019-processed-gene-0.0|Name=dna polymerase iv|organism=Tigriopus kingsejongensis|type=gene|length=224bp|location=Sequence derived from alignment at scaffold2710_size13019:3428..3651+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'dna polymerase iv' has the following synonyms
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