probable mitochondrial 28s ribosomal protein s25, snap_masked-scaffold275_size226830-processed-gene-0.15 (gene) Tigriopus kingsejongensis

Overview
Nameprobable mitochondrial 28s ribosomal protein s25
Unique Namesnap_masked-scaffold275_size226830-processed-gene-0.15
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of probable mitochondrial 28s ribosomal protein s25 vs. L. salmonis genes
Match: EMLSAG00000003618 (supercontig:LSalAtl2s:LSalAtl2s1983:8724:11559:1 gene:EMLSAG00000003618 transcript:EMLSAT00000003618 description:"maker-LSalAtl2s1983-augustus-gene-0.6")

HSP 1 Score: 112.079 bits (279), Expect = 5.808e-33
Identity = 52/91 (57.14%), Postives = 68/91 (74.73%), Query Frame = 0 
Query:   28 GEQVYFDVDHQTSATILERIIQTLGKSEEILGEEALATEKKDNPANFGRNCGRFCMCVIDGQVPCPSLVPLPKHWRGKYHFGHKDINEVEE 118
            G  V FDVD Q+++ IL+R+++ LGKSE  L +E +A++K DNPANFG +  RFC+C   GQ+PCPSLVPLPKHWRGKY   H+  +E EE
Sbjct:   82 GRSVRFDVDGQSNSEILQRLVRILGKSESQLEDERIASQKADNPANFGNSFQRFCICGEPGQLPCPSLVPLPKHWRGKYF--HQKFDEEEE 170
[Close]
BLAST of probable mitochondrial 28s ribosomal protein s25 vs. SwissProt
Match: gi|13633946|sp|Q9VY28.1|RT25_DROME (RecName: Full=Probable 28S ribosomal protein S25, mitochondrial; Short=MRP-S25; Short=S25mt)

HSP 1 Score: 88.1965 bits (217), Expect = 4.366e-22
Identity = 40/84 (47.62%), Postives = 51/84 (60.71%), Query Frame = 0 
Query:   28 GEQVYFDVDHQTSATILERIIQTLGKSEEILGEEALATEKKDNPANFGRNCGRFCMCVIDGQVPCPSLVPLPKHWRGKYHFGHK 111
            G  +  D+D +    I++ +++ +GK+ E L  E    E KDNPANFG  CGR C+C I GQVPCP  VPLP H RGK  F  K
Sbjct:   84 GRDMLIDLDSRNRNDIIDHLVKVVGKTREQLDAEERLKESKDNPANFGYGCGRHCICEIPGQVPCPGTVPLPDHMRGKILFAPK 167
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BLAST of probable mitochondrial 28s ribosomal protein s25 vs. SwissProt
Match: gi|13633894|sp|P82663.1|RT25_HUMAN (RecName: Full=28S ribosomal protein S25, mitochondrial; Short=MRP-S25; Short=S25mt; AltName: Full=Mitochondrial small ribosomal subunit protein mS25)

HSP 1 Score: 77.7962 bits (190), Expect = 4.749e-18
Identity = 43/82 (52.44%), Postives = 58/82 (70.73%), Query Frame = 0 
Query:   27 AGEQVYFDVDHQTSATILERIIQTLGKSEEILGEEALATEKKDNPANFG--RNCGRFCMCVIDGQVPCPSLVPLPKHWRGKY 106
            +GEQV  DV+ +++  I+E I + LGK+EE L EE    ++  +PANFG  + C R C+C ++GQVPCPSLVPLPK  RGKY
Sbjct:   82 SGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEKKQLSHPANFGPRKYCLRECICEVEGQVPCPSLVPLPKEMRGKY 163
[Close]
BLAST of probable mitochondrial 28s ribosomal protein s25 vs. SwissProt
Match: gi|108935900|sp|P82669.2|RT25_BOVIN (RecName: Full=28S ribosomal protein S25, mitochondrial; Short=MRP-S25; Short=S25mt)

HSP 1 Score: 77.0258 bits (188), Expect = 8.381e-18
Identity = 36/83 (43.37%), Postives = 56/83 (67.47%), Query Frame = 0 
Query:   27 AGEQVYFDVDHQTSATILERIIQTLGKSEEILGEEALATEKKDNPANFG--RNCGRFCMCVIDGQVPCPSLVPLPKHWRGKYH 107
            +GEQV  DV+ +++  I+E + + LGK+EE L  E    E+  +PA+FG  + C R C+C ++GQVPCP++VPLP+   GK+ 
Sbjct:   82 SGEQVLVDVETKSNKEIMEHVKKILGKNEETLRRERQEREQLSHPAHFGPRKYCLRECICEVEGQVPCPAVVPLPRELTGKFQ 164
[Close]
BLAST of probable mitochondrial 28s ribosomal protein s25 vs. SwissProt
Match: gi|13633926|sp|Q9D125.1|RT25_MOUSE (RecName: Full=28S ribosomal protein S25, mitochondrial; Short=MRP-S25; Short=S25mt)

HSP 1 Score: 71.633 bits (174), Expect = 1.102e-15
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 0 
Query:   27 AGEQVYFDVDHQTSATILERIIQTLGKSEEILGEEALATEKKDNPANFG--RNCGRFCMCVIDGQVPCPSLVPLPKHWRGKY 106
            +GEQV  DV+ +++  I+E I + LGK EE L EE L  +++ +P NFG  + C R CMC ++GQVPCP LVPLPK   GKY
Sbjct:   82 SGEQVLVDVETKSNKEIMEHIKKILGKKEETLREEELEKQQRFHPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTGKY 163
[Close]
BLAST of probable mitochondrial 28s ribosomal protein s25 vs. SwissProt
Match: gi|81918195|sp|Q4QR80.1|RT25_RAT (RecName: Full=28S ribosomal protein S25, mitochondrial; Short=MRP-S25; Short=S25mt)

HSP 1 Score: 71.633 bits (174), Expect = 1.187e-15
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 0 
Query:   27 AGEQVYFDVDHQTSATILERIIQTLGKSEEILGEEALATEKKDNPANFG--RNCGRFCMCVIDGQVPCPSLVPLPKHWRGKY 106
            +GEQV  DV+ +++  I+E I + LGK EE L EE L  +++ +P NFG  + C R CMC ++GQVPCP LVPLPK   GKY
Sbjct:   82 SGEQVLVDVETKSNTEIVEHIKKILGKKEETLREEELEKQQRFHPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTGKY 163
[Close]
BLAST of probable mitochondrial 28s ribosomal protein s25 vs. SwissProt
Match: gi|13633934|sp|Q9N361.1|RT25_CAEEL (RecName: Full=Probable 28S ribosomal protein S25, mitochondrial; Short=MRP-S25; Short=S25mt)

HSP 1 Score: 63.5438 bits (153), Expect = 1.478e-12
Identity = 34/86 (39.53%), Postives = 47/86 (54.65%), Query Frame = 0 
Query:   28 GEQVYFDVDHQTSATILERIIQTLGKSEEILGEEALATEKKDNPANFGRNCGRFCMCVIDGQVPCPSLVPLPKHWRGKYHFGHKDI 113
            G +V FD+D      I + + +TLGK+E +   E L +  K NPA+FG    R CMC + GQ PC  L+  P+   GKY + H  I
Sbjct:   85 GREVLFDLDGMKREEIEKLLAKTLGKTELVERREHLESIAKLNPADFGSKNERQCMCEVQGQHPCTGLLRAPQCVTGKYRWNHNLI 170
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BLAST of probable mitochondrial 28s ribosomal protein s25 vs. nr
Match: gi|225709168|gb|ACO10430.1| (Probable mitochondrial 28S ribosomal protein S25 [Caligus rogercresseyi])

HSP 1 Score: 109.768 bits (273), Expect = 5.875e-28
Identity = 51/91 (56.04%), Postives = 65/91 (71.43%), Query Frame = 0 
Query:   28 GEQVYFDVDHQTSATILERIIQTLGKSEEILGEEALATEKKDNPANFGRNCGRFCMCVIDGQVPCPSLVPLPKHWRGKYHFGHKDINEVEE 118
            G +V FDVD Q++  IL R+++ LGKSE +L  E +A++K DNPANF  +  RFC+C   GQ+PCPSLVPLPKHWRGKY   H+   E EE
Sbjct:   82 GRKVLFDVDGQSNFDILNRLVKILGKSETLLEAERIASQKADNPANFSNSSQRFCICGEPGQLPCPSLVPLPKHWRGKYF--HQKFEEEEE 170
[Close]
BLAST of probable mitochondrial 28s ribosomal protein s25 vs. nr
Match: gi|1325308994|ref|XP_023336118.1| (probable 28S ribosomal protein S25, mitochondrial [Eurytemora affinis])

HSP 1 Score: 108.612 bits (270), Expect = 1.427e-27
Identity = 50/85 (58.82%), Postives = 68/85 (80.00%), Query Frame = 0 
Query:   30 QVYFDVDHQTSATILERIIQTLGKSEEILGEEALATEKKDNPANFGRNCG--RFCMCVIDGQVPCPSLVPLPKHWRGK-YHFGHK 111
            +VYFDVD Q++  IL+R+++TLGKS+E+L EEA+A+E K NPANF R  G  R C+C + GQ+PC SLVP+P+HWRGK Y+ GH+
Sbjct:   88 KVYFDVDSQSNKDILDRLVKTLGKSKEVLEEEAVASEAKSNPANFCRRLGFSRHCICEMPGQIPCSSLVPVPRHWRGKWYNQGHR 172
[Close]
BLAST of probable mitochondrial 28s ribosomal protein s25 vs. nr
Match: gi|241794670|ref|XP_002400685.1| (ribosomal protein mRpS25, putative [Ixodes scapularis] >gi|215510818|gb|EEC20271.1| ribosomal protein mRpS25, putative [Ixodes scapularis])

HSP 1 Score: 104.375 bits (259), Expect = 6.083e-26
Identity = 49/88 (55.68%), Postives = 64/88 (72.73%), Query Frame = 0 
Query:   28 GEQVYFDVDHQTSATILERIIQTLGKSEEILGEEALATEKKDNPANFGRNCGRFCMCVIDGQVPCPSLVPLPKHWRGKYHFGHKDINE 115
            G++V  DVD +    IL++++ TLGK+ E L +EAL  EK+D PANFGRN  +FC+C + GQVPCP +VPLPK+ RGKY  G  DINE
Sbjct:   87 GKEVIMDVDSKDKDQILKQMMVTLGKTNEQLEKEALLREKRDTPANFGRNYDKFCICEVPGQVPCPGIVPLPKNMRGKYRLG--DINE 172
[Close]
BLAST of probable mitochondrial 28s ribosomal protein s25 vs. nr
Match: gi|987920424|ref|XP_015436324.1| (PREDICTED: probable 28S ribosomal protein S25, mitochondrial [Dufourea novaeangliae] >gi|1016166424|gb|KZC13586.1| putative 28S ribosomal protein S25, mitochondrial [Dufourea novaeangliae])

HSP 1 Score: 103.99 bits (258), Expect = 1.032e-25
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 0 
Query:   28 GEQVYFDVDHQTSATILERIIQTLGKSEEILGEEALATEKKDNPANFGRNCGRFCMCVIDGQVPCPSLVPLPKHWRGKYHFGHKD 112
            G+ +  D+D+++   IL  +++ +GKSE++L EE +  EKKDNPANFG +C R CMCV+ GQ+PCPS+VPLP H RGKY    KD
Sbjct:   84 GKTMLIDIDNKSKEDILGHLMKVVGKSEDVLREENITQEKKDNPANFGVDCSRSCMCVVPGQLPCPSVVPLPFHMRGKYIHAKKD 168
[Close]
BLAST of probable mitochondrial 28s ribosomal protein s25 vs. nr
Match: gi|751239732|ref|XP_011173868.1| (PREDICTED: probable 28S ribosomal protein S25, mitochondrial [Solenopsis invicta])

HSP 1 Score: 100.908 bits (250), Expect = 1.614e-25
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 0 
Query:   28 GEQVYFDVDHQTSATILERIIQTLGKSEEILGEEALATEKKDNPANFGRNCGRFCMCVIDGQVPCPSLVPLPKHWRGK 105
            G+ +  DVD +T   ILE +++ +GKS+E+L  EALA EKKDNPANFG  C R C+C + GQVPCP +VPLP H RGK
Sbjct:    7 GKTMLIDVDSKTKDEILEHLVKVVGKSKEVLTTEALAQEKKDNPANFGIGCDRSCICHVPGQVPCPGIVPLPDHMRGK 84
[Close]
BLAST of probable mitochondrial 28s ribosomal protein s25 vs. nr
Match: gi|156543332|ref|XP_001607001.1| (PREDICTED: probable 28S ribosomal protein S25, mitochondrial [Nasonia vitripennis])

HSP 1 Score: 102.834 bits (255), Expect = 2.135e-25
Identity = 43/86 (50.00%), Postives = 63/86 (73.26%), Query Frame = 0 
Query:   27 AGEQVYFDVDHQTSATILERIIQTLGKSEEILGEEALATEKKDNPANFGRNCGRFCMCVIDGQVPCPSLVPLPKHWRGKYHFGHKD 112
            +G+++  DVD ++   IL+ +++ +GKS+E+L +EA+A EKKDNPANFG  C + C+C I GQ+PCP LVPLP H RGK+ +   D
Sbjct:   83 SGKRMLIDVDMKSKDEILDHLLKVIGKSKEVLDQEAVAKEKKDNPANFGYGCEKSCICEIPGQIPCPGLVPLPNHMRGKFKYAKND 168
[Close]
BLAST of probable mitochondrial 28s ribosomal protein s25 vs. nr
Match: gi|1227098597|gb|OXU22714.1| (hypothetical protein TSAR_011325 [Trichomalopsis sarcophagae])

HSP 1 Score: 102.834 bits (255), Expect = 2.406e-25
Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = 0 
Query:   27 AGEQVYFDVDHQTSATILERIIQTLGKSEEILGEEALATEKKDNPANFGRNCGRFCMCVIDGQVPCPSLVPLPKHWRGKYHFGHKD 112
            +G+++  DVD ++   IL+ +++ +GKS+E+L  EA+A EKKDNPANFG  C + C+C I GQ+PCP LVPLP H RGK+ F   D
Sbjct:   83 SGKRMLIDVDMKSKDEILDHLLKVIGKSKEVLENEAVAKEKKDNPANFGYGCEKSCICEIPGQIPCPGLVPLPNHMRGKFKFAKND 168
[Close]
BLAST of probable mitochondrial 28s ribosomal protein s25 vs. nr
Match: gi|1000738413|ref|XP_015591752.1| (PREDICTED: probable 28S ribosomal protein S25, mitochondrial [Cephus cinctus])

HSP 1 Score: 102.834 bits (255), Expect = 2.745e-25
Identity = 44/82 (53.66%), Postives = 59/82 (71.95%), Query Frame = 0 
Query:   28 GEQVYFDVDHQTSATILERIIQTLGKSEEILGEEALATEKKDNPANFGRNCGRFCMCVIDGQVPCPSLVPLPKHWRGKYHFG 109
            G+++  D+D +T   ILE +I  +GKS+E+L +E +  EKKDNPANFG +C R C+C+I GQ+PCP  VPLP H RGKY F 
Sbjct:   84 GKEMLIDIDSKTKEEILEHLIHVVGKSKELLAKEKIDFEKKDNPANFGVDCERNCICIIPGQLPCPGTVPLPNHMRGKYKFA 165
[Close]
BLAST of probable mitochondrial 28s ribosomal protein s25 vs. nr
Match: gi|1274126583|ref|XP_022827656.1| (probable 28S ribosomal protein S25, mitochondrial [Spodoptera litura])

HSP 1 Score: 102.449 bits (254), Expect = 3.265e-25
Identity = 45/80 (56.25%), Postives = 60/80 (75.00%), Query Frame = 0 
Query:   28 GEQVYFDVDHQTSATILERIIQTLGKSEEILGEEALATEKKDNPANFGRNCGRFCMCVIDGQVPCPSLVPLPKHWRGKYH 107
            G ++  DVD+++   ILE +I T+GKS+E+L +EA+A EKKDNPANFG  C R C+C + GQ+PCP +VPLPK  RGKY 
Sbjct:   84 GRKILVDVDNKSKEEILEHLINTVGKSKEVLEQEAIAAEKKDNPANFGIGCERPCICEVYGQIPCPGVVPLPKFMRGKYK 163
[Close]
BLAST of probable mitochondrial 28s ribosomal protein s25 vs. nr
Match: gi|1199398546|ref|XP_021194564.1| (probable 28S ribosomal protein S25, mitochondrial [Helicoverpa armigera])

HSP 1 Score: 102.449 bits (254), Expect = 3.842e-25
Identity = 46/80 (57.50%), Postives = 60/80 (75.00%), Query Frame = 0 
Query:   28 GEQVYFDVDHQTSATILERIIQTLGKSEEILGEEALATEKKDNPANFGRNCGRFCMCVIDGQVPCPSLVPLPKHWRGKYH 107
            G ++  DVD+++   ILE +I+T+GKS+ +L +EA+A EKKDNPANFG  C R C+C I GQVPCP +VPLPK  RGKY 
Sbjct:   84 GRKILVDVDNKSKEDILEHLIKTVGKSKAVLEQEAIAAEKKDNPANFGIGCERPCICEIYGQVPCPGVVPLPKFMRGKYR 163
The following BLAST results are available for this feature:
BLAST of probable mitochondrial 28s ribosomal protein s25 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000036185.808e-3357.14supercontig:LSalAtl2s:LSalAtl2s1983:8724:11559:1 g... [more]
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BLAST of probable mitochondrial 28s ribosomal protein s25 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
gi|13633946|sp|Q9VY28.1|RT25_DROME4.366e-2247.62RecName: Full=Probable 28S ribosomal protein S25, ... [more]
gi|13633894|sp|P82663.1|RT25_HUMAN4.749e-1852.44RecName: Full=28S ribosomal protein S25, mitochond... [more]
gi|108935900|sp|P82669.2|RT25_BOVIN8.381e-1843.37RecName: Full=28S ribosomal protein S25, mitochond... [more]
gi|13633926|sp|Q9D125.1|RT25_MOUSE1.102e-1551.22RecName: Full=28S ribosomal protein S25, mitochond... [more]
gi|81918195|sp|Q4QR80.1|RT25_RAT1.187e-1551.22RecName: Full=28S ribosomal protein S25, mitochond... [more]
gi|13633934|sp|Q9N361.1|RT25_CAEEL1.478e-1239.53RecName: Full=Probable 28S ribosomal protein S25, ... [more]
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BLAST of probable mitochondrial 28s ribosomal protein s25 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|225709168|gb|ACO10430.1|5.875e-2856.04Probable mitochondrial 28S ribosomal protein S25 [... [more]
gi|1325308994|ref|XP_023336118.1|1.427e-2758.82probable 28S ribosomal protein S25, mitochondrial ... [more]
gi|241794670|ref|XP_002400685.1|6.083e-2655.68ribosomal protein mRpS25, putative [Ixodes scapula... [more]
gi|987920424|ref|XP_015436324.1|1.032e-2552.94PREDICTED: probable 28S ribosomal protein S25, mit... [more]
gi|751239732|ref|XP_011173868.1|1.614e-2557.69PREDICTED: probable 28S ribosomal protein S25, mit... [more]
gi|156543332|ref|XP_001607001.1|2.135e-2550.00PREDICTED: probable 28S ribosomal protein S25, mit... [more]
gi|1227098597|gb|OXU22714.1|2.406e-2551.16hypothetical protein TSAR_011325 [Trichomalopsis s... [more]
gi|1000738413|ref|XP_015591752.1|2.745e-2553.66PREDICTED: probable 28S ribosomal protein S25, mit... [more]
gi|1274126583|ref|XP_022827656.1|3.265e-2556.25probable 28S ribosomal protein S25, mitochondrial ... [more]
gi|1199398546|ref|XP_021194564.1|3.842e-2557.50probable 28S ribosomal protein S25, mitochondrial ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold275_size226830supercontigscaffold275_size226830:42837..43386 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteC:ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold275_size226830-processed-gene-0.15-mRNA-1snap_masked-scaffold275_size226830-processed-gene-0.15-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold275_size226830:42837..43386-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold275_size226830-processed-gene-0.15 ID=snap_masked-scaffold275_size226830-processed-gene-0.15|Name=probable mitochondrial 28s ribosomal protein s25|organism=Tigriopus kingsejongensis|type=gene|length=550bp|location=Sequence derived from alignment at scaffold275_size226830:42837..43386- (Tigriopus kingsejongensis)
ATGGAGCCGCTCCACTCTGATAGAGCAGCCAGCTCACCCTCATTTGGGGA
GGTAAATCGAACTGGCGTCGGCATTCTCGCCGGTTGGCCCGAGCCACCCG
ATATTCATTCACATCTGCCTGGGGCCATGGCGACTCACGCCCTCTTAGCG
TGAAGGGTGGTTAATTGATCCACGGTGAATTGAGGCCAATGTCCCACTAG
CTGGCCATGGATCCATCCGAATTGAAAAGCACCTTCGTTCGGCAGTGACC
AACCCTAATCTCACCTTATTTTCAGGCGAGCAGGTCTACTTCGATGTGGA
CCACCAGACCAGTGCCACCATTTTGGAGCGGATCATCCAGACCTTGGGCA
AATCGGAAGAGATTTTGGGCGAAGAGGCTCTGGCCACGGAAAAGAAAGAC
AATCCGGCCAATTTCGGCCGAAACTGTGGTCGATTCTGCATGTGCGTCAT
CGACGGTCAAGTGCCATGTCCCAGTTTGGTACCCTTGCCCAAGCATTGGC
GAGGCAAGTACCACTTTGGCCACAAGGACATCAACGAGGTGGAGGAGTGA
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Synonyms
The feature 'probable mitochondrial 28s ribosomal protein s25' has the following synonyms
Synonym
Tk00625
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