lin-11, snap_masked-scaffold355_size198070-processed-gene-0.21 (gene) Tigriopus kingsejongensis

Overview


Name	lin-11
Unique Name	snap_masked-scaffold355_size198070-processed-gene-0.21
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

[Close]

BLAST of lin-11 vs. L. salmonis genes
Match: EMLSAG00000008249 (supercontig:LSalAtl2s:LSalAtl2s498:40217:45202:1 gene:EMLSAG00000008249 transcript:EMLSAT00000008249 description:"maker-LSalAtl2s498-snap-gene-0.4")

HSP 1 Score: 234.187 bits (596), Expect = 1.035e-74
Identity = 123/211 (58.29%), Postives = 149/211 (70.62%), Query Frame = 0

Query:    1 MDQFSTKIGQWFFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEHAFMCHMKNSCGISDLYERDSGIECDLSMSETFKCAGDAADSKSPLSNGDDQDS----DSEKSKN------DDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFMARAPFLPPNARRFGPPPQADPRF 201
             D++ST++G +FFHP+C+ C+VC + I KG  V +S DG +YCE+H+FM  +K +         DSGIE DLS++E+       +++ S L N DD  S    +SE   +      ++ KENKRRGPRTTIKAKQ EVLK VFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFMAR PFLPPNA R G P    P +
Sbjct:   74 FDEYSTRLGDYFFHPNCLNCSVCHVQILKGQNVGFSNDGLLYCEDHSFMSFLKTTLPYGSF---DSGIESDLSVNES------GSNTPSXLMNLDDNSSPKSPESEDDDDKVKDLDENGKENKRRGPRTTIKAKQFEVLKTVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFMARGPFLPPNASRRGGPGMRYPGY 275

[Close]

BLAST of lin-11 vs. L. salmonis genes
Match: EMLSAG00000008243 (supercontig:LSalAtl2s:LSalAtl2s498:126445:127976:-1 gene:EMLSAG00000008243 transcript:EMLSAT00000008243 description:"maker-LSalAtl2s498-augustus-gene-1.8")

HSP 1 Score: 122.094 bits (305), Expect = 2.354e-32
Identity = 73/163 (44.79%), Postives = 92/163 (56.44%), Query Frame = 0

Query:   13 FHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEHAFMCHMKNSCGISDLYERDSGIECDLSMSETFKCAGDAADSKSPLSNGDDQDSDSEKSKNDDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQM 175
            FH +C  C VC   +  G K+      YV  +E +F+C      G+                           D +      +D D D  +  ++D K+ KRRGPRTTIKAKQLEVLK+ F+ TPKPTR +REQLAKETGLPMRVIQVWFQN+RSKE+R+ QM
Sbjct:   88 FHLNCFTCVVCHKQLHTGEKL------YVLRDE-SFICKKDYLSGVQ------------------------QQDYEEEEEEEED-DLDFGRLDSEDEKKEKRRGPRTTIKAKQLEVLKSTFNSTPKPTRHIREQLAKETGLPMRVIQVWFQNRRSKERRLKQM 218

[Close]

BLAST of lin-11 vs. L. salmonis genes
Match: EMLSAG00000002055 (supercontig:LSalAtl2s:LSalAtl2s1373:69728:71167:-1 gene:EMLSAG00000002055 transcript:EMLSAT00000002055 description:"snap_masked-LSalAtl2s1373-processed-gene-0.14")

HSP 1 Score: 117.857 bits (294), Expect = 3.685e-31
Identity = 81/210 (38.57%), Postives = 101/210 (48.10%), Query Frame = 0

Query:    4 FSTKIGQWFFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEHAFMCHMKNSCGISDLYERDS----GIECDLSMSETFKCAGDAADSKSPLSNGDDQDSDSEKSKNDDS-------------------KENK-RRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFMARAPFLPPNAR 189
            FS+  G+   H  C +C++C   + +  K        +YC +  +           ++ E  S         L  +  F C           S G  +D     S + +S                   K+NK RRGPRTTIK KQL+VLK  F  TPKPTR MR+ LAKETGLPMRVIQVWFQNKRSKEKRM QMRFMA       N+R
Sbjct:   23 FSSLGGETQIHDKCSVCSLCSSRLTE--KCYSDAQNRLYCPQDYYRSFGHKCSACQEVIEYGSLSLRASSTLLYHASCFSCVSCGHLLSEGTSYGVSEDGHILCSTHYNSEGCGGISDSEESNSSGSEGKDNKNRRGPRTTIKTKQLDVLKTAFDSTPKPTRSMRQALAKETGLPMRVIQVWFQNKRSKEKRMTQMRFMASRLSSVKNSR 230

[Close]

BLAST of lin-11 vs. L. salmonis genes
Match: EMLSAG00000008242 (supercontig:LSalAtl2s:LSalAtl2s498:108992:109816:-1 gene:EMLSAG00000008242 transcript:EMLSAT00000008242 description:"augustus_masked-LSalAtl2s498-processed-gene-1.0")

HSP 1 Score: 99.3673 bits (246), Expect = 1.977e-24
Identity = 71/191 (37.17%), Postives = 93/191 (48.69%), Query Frame = 0

Query:    9 GQWFFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEHAFMCHMKNSCGISDLYERDSGIE----------------CDLSMSETFKCAGDAADSKSPLSNGDDQ------DSDSEKSKNDDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRF 177
            G  F+H DC+ C  C   +   G    S+ G ++C +      +K S     +   + GI+                C+  ++E         D   PL   D+        S   + K DD K  KRRGPR TIK  QLE L+ +F++ PKP R +RE LAK TGL MRVIQVWFQNKRSKEKR+  MR 
Sbjct:   40 GNAFYHKDCLRCIDCHEHL--SGTCFKSHLG-LHCHKDFISRSIKCSGCAKYMSPTEPGIKISSSSFYHPSCLKCFICETLLTEKMG-IHTTGDPLCPLHIRDEHDDSESVSSSDSEDKLDDDKRGKRRGPRXTIKPPQLEKLQEIFNRNPKPNRAIRENLAKNTGLAMRVIQVWFQNKRSKEKRLTSMRM 226

[Close]

BLAST of lin-11 vs. L. salmonis genes
Match: EMLSAG00000003616 (supercontig:LSalAtl2s:LSalAtl2s19813:128:427:1 gene:EMLSAG00000003616 transcript:EMLSAT00000003616 description:"snap_masked-LSalAtl2s19813-processed-gene-0.1")

HSP 1 Score: 91.6633 bits (226), Expect = 2.306e-23
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 0

Query:   96 DQDSDSEKSKNDDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQ 159
            D++ DS+   +DD    KRRGPRTTIKAKQLEVLK  FSQTPKPTR +REQLAKETGL MRVIQ
Sbjct:   37 DKECDSKSLLDDDGPGGKRRGPRTTIKAKQLEVLKTAFSQTPKPTRHIREQLAKETGLXMRVIQ 100

[Close]

BLAST of lin-11 vs. L. salmonis genes
Match: EMLSAG00000010483 (supercontig:LSalAtl2s:LSalAtl2s696:31985:42695:-1 gene:EMLSAG00000010483 transcript:EMLSAT00000010483 description:"maker-LSalAtl2s696-augustus-gene-0.26")

HSP 1 Score: 83.9593 bits (206), Expect = 1.785e-18
Identity = 60/176 (34.09%), Postives = 86/176 (48.86%), Query Frame = 0

Query:    1 MDQFSTKIGQWFFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEHAFMCH--MKNSCGI----SDLYERDSGIECDLSMSETFKCA-----GDAADSKSPLSNGDDQDSDSEKSKNDDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNK 165
            +D+F  KI    +H  C+ CN C I + +   ++   +  V+C++  F  +      CG     SD+  R       L   E F C       D  D    + +         +S  +    NKR  PRTTI A Q+EVLK  +  +PKP R +REQLA++TGL MRV+QVWFQN+
Sbjct:   40 LDKFILKILDKNWHSKCLRCNQCGIQLKEKCFLK---NNDVFCKDDFFRKYGPKCGQCGTGIPPSDVIRRAQDFVYHL---ECFICTICCKKLDTGDEYYLMEDKKLLCKYDYESARNSVDGNKR--PRTTITAXQMEVLKEAYKNSPKPARHIREQLAQDTGLDMRVVQVWFQNR 207

[Close]

BLAST of lin-11 vs. L. salmonis genes
Match: EMLSAG00000004956 (supercontig:LSalAtl2s:LSalAtl2s260:1196109:1202410:1 gene:EMLSAG00000004956 transcript:EMLSAT00000004956 description:"maker-LSalAtl2s260-augustus-gene-12.10")

HSP 1 Score: 71.633 bits (174), Expect = 5.215e-14
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 0

Query:  105 KNDDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFMARAPFLPPNARRFG 192
            KN D K  +    RT +  KQL +LK  +S  P+P  LM+EQL + T L  RVI+VWFQNKR K+K++ Q R + +      + R+ G
Sbjct:  271 KNADRKSAR---ARTVLSEKQLNILKTCYSANPRPDALMKEQLVEMTALSPRVIRVWFQNKRCKDKKI-QNRLLEKQMQRESDGRKLG 354

[Close]

BLAST of lin-11 vs. L. salmonis genes
Match: EMLSAG00000006341 (supercontig:LSalAtl2s:LSalAtl2s346:279696:285335:-1 gene:EMLSAG00000006341 transcript:EMLSAT00000006341 description:"maker-LSalAtl2s346-augustus-gene-3.11")

HSP 1 Score: 70.0922 bits (170), Expect = 1.369e-13
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 0

Query:  104 SKNDDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQ 174
            S++ D +   +R PRT + A Q    K  F  +PKP R +RE LAK+TGL +RV+QVWFQN+R+K K++ +
Sbjct:  224 SRSRDGRRGPKR-PRTILTAAQRRQFKASFEISPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQR 293

[Close]

BLAST of lin-11 vs. L. salmonis genes
Match: EMLSAG00000004639 (supercontig:LSalAtl2s:LSalAtl2s241:596930:621161:-1 gene:EMLSAG00000004639 transcript:EMLSAT00000004639 description:"augustus_masked-LSalAtl2s241-processed-gene-6.0")

HSP 1 Score: 66.2402 bits (160), Expect = 4.063e-12
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = 0

Query:  107 DDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEK----RMHQMRFMARAPFLP 185
            D++ + + +  RTTI  +QL+ L   +     P+R M EQ+A E GL  RV+QVWFQN R++E+    R HQ     R P+ P
Sbjct: 2306 DEAGQPRDKRLRTTILPEQLDFLYQKYQVESNPSRKMLEQIANEVGLRKRVVQVWFQNTRARERKGQFRAHQQVINKRCPYCP 2388

HSP 2 Score: 55.4546 bits (132), Expect = 1.425e-8
Identity = 26/72 (36.11%), Postives = 45/72 (62.50%), Query Frame = 0

Query:  100 DSEKSKNDDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKR 171
            D++  +N DS     +  RT + + Q++++K++F+    PT     +L ++ GL  RV+QVWFQN R+KEK+
Sbjct: 2571 DAQIFRNGDSSMAASKRFRTQMSSLQVKMMKSIFTFYKTPTMNECSELGRQIGLQKRVVQVWFQNARAKEKK 2642

[Close]

BLAST of lin-11 vs. L. salmonis genes
Match: EMLSAG00000004664 (supercontig:LSalAtl2s:LSalAtl2s242:897246:900136:1 gene:EMLSAG00000004664 transcript:EMLSAT00000004664 description:"maker-LSalAtl2s242-snap-gene-9.16")

HSP 1 Score: 64.6994 bits (156), Expect = 8.060e-12
Identity = 45/142 (31.69%), Postives = 64/142 (45.07%), Query Frame = 0

Query:   95 DDQDSDSEKSKND-DSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFMARAPFLPPNARRFGPPPQADPRFCFPPNSMPFDYGGPGGFDPSCGGGGPYPGSMPPY 235
            +D+D   ++  ND D  + K R  RTT    QL  L+  F ++  P    RE+LA +  LP   +QVWFQN+R+K +R  +M            A R G   Q         N+ P   GG     P  GG G  P ++ P+
Sbjct:  161 EDEDCGXDRDDNDPDGSKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKME-----------AARLG--IQEYHALSGLNNTSPSQLGG----RPHSGGLGGLPSALDPW 285

[Close]

BLAST of lin-11 vs. SwissProt
Match: gi|2506818|sp|P20154.2|LIN11_CAEEL (RecName: Full=Protein lin-11; AltName: Full=Abnormal cell lineage protein 11)

HSP 1 Score: 140.198 bits (352), Expect = 7.052e-37
Identity = 88/194 (45.36%), Postives = 110/194 (56.70%), Query Frame = 0

Query:   12 FFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEHAFMCHMKNSCGISDLYERDSGIECDLSMSETFKCAGDAADSKSPLSNGDDQDSDSEKSKNDDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRF----MARAPF------LPPNARRFGPPP 195
             FH  C  C+VC+  +  G ++ Y  +G  +  +  F    K S   S      +G EC+  + E      DA D        DD + D  K  +DDS   KRRGPRTTIKAKQLE LKN F+ TPKPTR +REQLA ETGL MRVIQVWFQN+RSKE+RM Q+RF     +R P       + PN ++F PPP
Sbjct:  147 VFHIRCFQCSVCQRLLDTGDQL-YIMEGNRFVCQSDFQTATKTSTPTSIHRPVSNGSECNSDVEED---NVDACDE----VGLDDGEGDCGKDNSDDSNSAKRRGPRTTIKAKQLETLKNAFAATPKPTRHIREQLAAETGLNMRVIQVWFQNRRSKERRMKQLRFGGYRQSRRPRRDDIVDMFPNDQQFYPPP 332

[Close]

BLAST of lin-11 vs. SwissProt
Match: gi|60416412|sp|P48742.2|LHX1_HUMAN (RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein 1; AltName: Full=Homeobox protein Lim-1; Short=hLim-1)

HSP 1 Score: 128.257 bits (321), Expect = 1.894e-32
Identity = 92/241 (38.17%), Postives = 128/241 (53.11%), Query Frame = 0

Query:   12 FFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEHAFMCHMKNSCGISD--LYERDSGIECDLSMSETFKCAGDAADSKSPLSNGDDQDSDSEKSKNDDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFM-ARAPFLPPNARRFGP-PPQADPRFCFPPNSMPF------DYGGPGGFDPSCGGGGPYPGSMPPYGVPFPPN 242
             FH +C  C +C   +  G ++    +    C+E     ++ NS    +  L+   +G +  LS         DA DS+S  +N  D+++ S ++ +D +   KRRGPRTTIKAKQLE LK  F+ TPKPTR +REQLA+ETGL MRVIQVWFQN+RSKE+RM Q+  + AR      + RR  P   + +P    P     F      +Y GPGG       G P   +  P  +PF P+
Sbjct:   83 VFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKED----YLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSES--ANVSDKEAGSNEN-DDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPS 316

[Close]

BLAST of lin-11 vs. SwissProt
Match: gi|1708826|sp|P53411.1|LHX1_CHICK (RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein 1; AltName: Full=Homeobox protein Lim-1)

HSP 1 Score: 127.872 bits (320), Expect = 1.914e-32
Identity = 109/316 (34.49%), Postives = 152/316 (48.10%), Query Frame = 0

Query:   12 FFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEHAFMCHMKNSCGISDLYERDSGIECDLSMSETFKCAGDAADSKSPLSNGDDQDSDSEKSKNDDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFM-ARAPFLPPNARRFGP-PPQADPRFCFPPNSMPF------DYGGPGGFDPSCGGGGPYPGSMPPYGVPF-----PPNDHMTDLGYPQSIPPNPPPMSQGD-----GSPLDSFPSPPP--------QNHDFHTPPPP----QGNGGSDYG 297
             FH +C  C +C   +  G ++    +    C+E     +  N+   + L+   +G +  LS         DA DS+S  +N  D+++ S ++ +D +   KRRGPRTTIKAKQLE LK  F+ TPKPTR +REQLA+ETGL MRVIQVWFQN+RSKE+RM Q+  + AR      + RR  P   + +P    P     F      +Y GPG        G P   +  P  +PF     PP   +  L +P  +P + PP            P    PSP P         + +   P PP      NGG++YG
Sbjct:   83 VFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYL--NNSNTAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSES--ANVSDKETGSNEN-DDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGELLPNGPFSFYGDYQSEYYGPGANYEFFPQGPPSSQAQTPVELPFGAAGGPPGTPLGALEHP--LPGHHPPGEAQRFPDMLAHPAGDSPSPEPTLPGSLHSMSAEVFGPSPPFSSISVNGGANYG 391

[Close]

BLAST of lin-11 vs. SwissProt
Match: gi|60389888|sp|Q5IS44.1|LHX1_PANTR (RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein 1; AltName: Full=Homeobox protein Lim-1 >gi|60389889|sp|Q5IS89.1|LHX1_SAIBB RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein 1; AltName: Full=Homeobox protein Lim-1)

HSP 1 Score: 127.102 bits (318), Expect = 3.710e-32
Identity = 92/241 (38.17%), Postives = 127/241 (52.70%), Query Frame = 0

Query:   12 FFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEHAFMCHMKNSCGISD--LYERDSGIECDLSMSETFKCAGDAADSKSPLSNGDDQDSDSEKSKNDDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFM-ARAPFLPPNARRFGP-PPQADPRFCFPPNSMPF------DYGGPGGFDPSCGGGGPYPGSMPPYGVPFPPN 242
             FH +C  C +C   +  G ++    +    C+E     ++ NS    +  L+   +G +  LS         DA DS+S  +N  D++  S ++ +D +   KRRGPRTTIKAKQLE LK  F+ TPKPTR +REQLA+ETGL MRVIQVWFQN+RSKE+RM Q+  + AR      + RR  P   + +P    P     F      +Y GPGG       G P   +  P  +PF P+
Sbjct:   83 VFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKED----YLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSES--ANVSDKEGGSNEN-DDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPS 316

[Close]

BLAST of lin-11 vs. SwissProt
Match: gi|51702761|sp|P63007.1|LHX1_RAT (RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein 1; AltName: Full=Homeobox protein Lim-1; Short=Rlim >gi|51702763|sp|P63006.1|LHX1_MOUSE RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein 1; AltName: Full=Homeobox protein Lim-1 >gi|51702764|sp|P63008.1|LHX1_MESAU RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein 1; AltName: Full=Homeobox protein LMX-2; AltName: Full=Homeobox protein Lim-1)

HSP 1 Score: 127.102 bits (318), Expect = 3.748e-32
Identity = 92/241 (38.17%), Postives = 127/241 (52.70%), Query Frame = 0

Query:   12 FFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEHAFMCHMKNSCGISD--LYERDSGIECDLSMSETFKCAGDAADSKSPLSNGDDQDSDSEKSKNDDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFM-ARAPFLPPNARRFGP-PPQADPRFCFPPNSMPF------DYGGPGGFDPSCGGGGPYPGSMPPYGVPFPPN 242
             FH +C  C +C   +  G ++    +    C+E     ++ NS    +  L+   +G +  LS         DA DS+S  +N  D++  S ++ +D +   KRRGPRTTIKAKQLE LK  F+ TPKPTR +REQLA+ETGL MRVIQVWFQN+RSKE+RM Q+  + AR      + RR  P   + +P    P     F      +Y GPGG       G P   +  P  +PF P+
Sbjct:   83 VFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKED----YLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSES--ANVSDKEGGSNEN-DDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPS 316

[Close]

BLAST of lin-11 vs. SwissProt
Match: gi|267419|sp|P29674.1|LHX1_XENLA (RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein 1; AltName: Full=Homeobox protein Lim-1; Short=Xlim1; Short=x-Lhx1; Short=xLIM-1)

HSP 1 Score: 124.79 bits (312), Expect = 2.819e-31
Identity = 98/279 (35.13%), Postives = 131/279 (46.95%), Query Frame = 0

Query:   13 FHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEHAFMCHMKNSCGISDLYERDSGIECDLSMSETFKCAGDAADSKSPLSNGDDQDSDSEKSKNDDSKEN---KRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFM-ARAPFLPPNARRFGP-PPQADPRFCFPPNSMPF------DYGGPGGFDPSCGGGGPYPGSMPPYGVPFPPNDHMTDLGYPQSIPPNPPPMSQGDGSPLDSFPSPPPQNH 280
            FH +C  C +C   +  G ++    +    C+E        N+    + +   +G +  LS         DA DS+S         SD E   N++  +N   KRRGPRTTIKAKQLE LK  F+ TPKPTR +REQLA+ETGL MRVIQVWFQN+RSKE+RM Q+  + AR      + RR  P   + +P    P     F      +Y GPG        G P   +  P  +PF           P S+P          G+PL +   P P +H
Sbjct:   84 FHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLN---NNNAAKENSFISVTGSDPSLSPESQDPLQDDAKDSESA------NVSDKEAGINENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGELIPNGPFAFYGDYQSEYYGPGSNYDFFPQGPPSSQAQTPVDLPF----------VPSSVPA---------GTPLGAMDHPIPGHH 334

[Close]

BLAST of lin-11 vs. SwissProt
Match: gi|47606426|sp|P61376.1|LHX5_RAT (RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein 5; AltName: Full=Homeobox protein LIM-2 >gi|47606427|sp|P61375.1|LHX5_MOUSE RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein 5)

HSP 1 Score: 124.79 bits (312), Expect = 2.863e-31
Identity = 80/193 (41.45%), Postives = 109/193 (56.48%), Query Frame = 0

Query:   12 FFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEHAFMCHMKNSCGISDLYERDSGIECDLSMSETFKCAGDAA--DSKSPLSNG-----DDQDSDSEKSKNDDSKEN---KRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFM-ARAPFLPPNARRFGP 193
             FH +C  C VC   +  G ++      YV  +E+ F+C         D Y   S ++ + S++    C   +   D + PL +      +   SD E + N++ ++N   KRRGPRTTIKAKQLE LK  F+ TPKPTR +REQLA+ETGL MRVIQVWFQN+RSKE+RM Q+  + AR      + RR  P
Sbjct:   84 VFHLNCFTCMVCNKQLSTGEEL------YVI-DENKFVC--------KDDYLSSSSLK-EGSLNSVSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRP 260

[Close]

BLAST of lin-11 vs. SwissProt
Match: gi|18202938|sp|Q9H2C1.1|LHX5_HUMAN (RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein 5)

HSP 1 Score: 124.405 bits (311), Expect = 3.843e-31
Identity = 79/193 (40.93%), Postives = 106/193 (54.92%), Query Frame = 0

Query:   12 FFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEHAFMCHMKNSCGISDLYERDSGIECDLSMSETFKCAGDA-------ADSKSPLSNGDDQDSDSEKSKNDDSKEN---KRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFM-ARAPFLPPNARRFGP 193
             FH +C  C VC   +  G ++      YV  +E+ F+C         D Y   S ++ + S++    C   +       A    P    +   SD E + N++ ++N   KRRGPRTTIKAKQLE LK  F+ TPKPTR +REQLA+ETGL MRVIQVWFQN+RSKE+RM Q+  + AR      + RR  P
Sbjct:   84 VFHLNCFTCMVCNKQLSTGEEL------YVI-DENKFVC--------KDDYLSSSSLK-EGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRP 260

[Close]

BLAST of lin-11 vs. SwissProt
Match: gi|2497670|sp|Q90476.1|LHX1_DANRE (RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein 1; AltName: Full=Homeobox protein Lim-1)

HSP 1 Score: 122.865 bits (307), Expect = 1.730e-30
Identity = 87/243 (35.80%), Postives = 129/243 (53.09%), Query Frame = 0

Query:   12 FFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEHAFMC---HMKNSCGI-SDLYERDSGIECDLSMSETFKCAGDAADSKSPLSNGDDQDSDSEKSKNDDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFMA--RAPFLPPNARRFGPPPQADPRFCFPPNSMPF------DYGGPGGFDPSCGGGGPYPGSMPPYGVPFPPN 242
             FH +C  C +C   +  G ++      Y+  +E+ F+C   ++ N+ G  S+L    +  +  LS     +   D  D++  ++N  D+++ + ++ +D +   KRRGPRTTIKAKQLE LK  F+ TPKPTR +REQLA+ETGL MRVIQVWFQN+RSKE+RM Q+  +   R  F     R      + +P    P     +      +Y GPGG       G P   +  P  +PF P+
Sbjct:   83 VFHLNCFTCMMCNKQLSTGEEL------YII-DENKFVCKDDYLSNTNGKDSNLLSVTACSDPSLSPDSQDQLQDDVKDAE--IANLSDKETGNNEN-DDQNLGGKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRTLVDRLEPGELIPNGPFSYYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPS 315

[Close]

BLAST of lin-11 vs. SwissProt
Match: gi|1708831|sp|P37137.2|LHX5_XENLA (RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein 5; AltName: Full=Homeobox protein LIM-5; Short=xLIM-5; AltName: Full=xLIM-2A)

HSP 1 Score: 122.094 bits (305), Expect = 2.611e-30
Identity = 77/191 (40.31%), Postives = 104/191 (54.45%), Query Frame = 0

Query:   12 FFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEHAFMCHMKNSCGISDLYERDSGIECDLSMSETFKCAGDAADSKSPLSNGDDQ-----DSDSEKSKNDDSKEN---KRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFM-ARAPFLPPNARRFGP 193
             FH +C  C VC   +  G ++      Y+  +E+ F+C         D     S  E  L+   +      + D + P+ +   +      SD E + N++ ++N   KRRGPRTTIKAKQLE LK  F  TPKPTR +REQLA+ETGL MRVIQVWFQN+RSKE+RM Q+  + AR      + RR  P
Sbjct:   84 VFHLNCFTCMVCNKQLSTGEEL------YII-DENKFVCK-------EDYISASSLKESSLNSVSSCTDRSLSPDIQDPIQDESKETDHSTSSDKETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFIATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRP 260

[Close]

BLAST of lin-11 vs. nr
Match: gi|1325282503|ref|XP_023325946.1| (LIM/homeobox protein Lhx1-like [Eurytemora affinis])

HSP 1 Score: 172.17 bits (435), Expect = 8.904e-47
Identity = 139/349 (39.83%), Postives = 170/349 (48.71%), Query Frame = 0

Query:    2 DQFSTKIGQWFFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEHAFMCHMKNSCGIS---------DLYERDSGIECDLSMSETFKCAGDAADSKSPLSNGDDQDSDSEKSKNDDSKENK---------------------RRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFM---ARAPFLPPNARRFGPPPQADPRFCFPPNSMPFDYGGPGGFDPSCGGGGPYPGSMPPYGVPFPPND-HMTDLG---YP--QSIPPNPPPMSQGDGSPLDSFPSPPPQNHDFHTPPPPQGNGGSDYGGGGTDQCFPSPPLS 311
            DQ    IG   FH +C  C+ C   + KG +V   + G + CE+     +++N   +S         +  + DSGIE ++S          + D K  L    D+D   EKS ++DSK+                       RRGPRTTIKAKQLEVLK  F Q PKPTRLMREQLAKETGLPMRVIQVWFQNKRSK+KR+HQ++FM    R PFLPPN RR   P        FPPN+M FD+                         PFPP D H  + G   +P  QS+PP   P         +S+ SPP    DF         G  DY     D CFPSPPLS
Sbjct:   73 DQDVRNIGDSQFHLECFKCSRCCKGLDKGMQVGLDHLGNLLCEKD----YLENKLNLSADTKLGLRTEETDADSGIESEVS----------SDDLKKLL----DED---EKSFDEDSKDPGSPDDGDDYDKDDDKKEGKDGKRRGPRTTIKAKQLEVLKTCFDQNPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKQKRIHQLQFMGHPGRMPFLPPNHRRILHP------MSFPPNAMAFDFRS-----------------------PFPPQDCHNFEFGGFSFPAEQSMPPCEFP---------NSYSSPPLHPGDF---------GSHDY---QVDPCFPSPPLS 350

[Close]

BLAST of lin-11 vs. nr
Match: gi|1325322960|ref|XP_023343309.1| (protein lin-11-like [Eurytemora affinis])

HSP 1 Score: 166.007 bits (419), Expect = 6.861e-45
Identity = 109/264 (41.29%), Postives = 140/264 (53.03%), Query Frame = 0

Query:    2 DQFSTKIGQWFFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEHAFMCHMKNSCGISDLYERDSGIECDLSMSETFKCAGDAADSKSP-LSNGDDQDSDSEKSKNDDSKEN----KRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFMARAPFLPPNARRFGPPPQADPRFCFPPNSMPFDYGGPGGFDPSCGGGGPYPGSMPPYGVPFPPNDHMTDLGYPQSIPPNPPP 260
            D+   +IG   FH  C  C+ CK  + KG K+   + G + CE+            I D   R  G E  +   +  +   D     SP  S+ D+ +SD E    DD K+     KRRGPRT I +KQLEVLKNVF+ +PKPTR+MREQLAK+TGL MRVIQVWFQNKRSKEKRMHQ+RFMA   F     +R   P  A      PPN++ ++Y    G+   CG    + G   P+  P PP  H +D  +  S    P P
Sbjct:   72 DEDVQRIGDLKFHLQCFSCSCCKKVLEKGMKMGQDHQGNLLCEQDFIR-------TIEDFSMR--GYERVIKDEDEIEDNKDIIFPDSPEKSDKDEDESDKENEDKDDEKKECKDGKRRGPRTNISSKQLEVLKNVFNASPKPTRMMREQLAKDTGLTMRVIQVWFQNKRSKEKRMHQLRFMAGGGF-----QRVLHPMFA------PPNAVAYNYNSRFGYSSYCGEQPEFYGEYNPF--PSPPQQH-SDFSFQDSENCFPSP 312

[Close]

BLAST of lin-11 vs. nr
Match: gi|1325282510|ref|XP_023325949.1| (LIM/homeobox protein Lhx5-like [Eurytemora affinis])

HSP 1 Score: 165.622 bits (418), Expect = 8.555e-45
Identity = 105/255 (41.18%), Postives = 136/255 (53.33%), Query Frame = 0

Query:   12 FFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEHAFM---CHMKNSCGISDLYERDSGIECDLSMSETFKCAGDAADSK--SPLSNGD-DQDSDSEKSKNDDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFMARAPFLPPNARRFGPPPQADPRFCFPPNSMPFDYGGPGGFDPSCGGGGPYPGSMPPYGVPFPPNDHMTDLGYPQSIPPNPPP 260
             FHP C  C+ C + + KG    +S+D  + CEEH +    C  K                  L+ SE      + AD +    L   D +QD D  + +  + K+ KRRGPRT I +KQLEVLKNVF+ +PKPTR+MREQLAK+TGL MRVIQVWFQNKRSKEKRMHQ+RFMA   F     +R   P  A      PPN++ ++Y    G+   CG    + G   P+  P PP  H +D  +  S    P P
Sbjct:   81 IFHPSCFSCSCCGVVLEKGMMFGFSFDSRLVCEEHIWNPENCEPKPG---------------KLAKSEQEIFVNNRADEEKDETLQTLDLEQDEDLSEDEKRECKDGKRRGPRTNISSKQLEVLKNVFNASPKPTRMMREQLAKDTGLTMRVIQVWFQNKRSKEKRMHQLRFMAGGGF-----QRVLHPMFA------PPNAVAYNYNSGFGYSSYCGEQPEFYGEYNPF--PSPPQQH-SDFSFQDSENCFPSP 306

[Close]

BLAST of lin-11 vs. nr
Match: gi|1325282506|ref|XP_023325947.1| (LIM/homeobox protein Lhx1-like [Eurytemora affinis])

HSP 1 Score: 155.992 bits (393), Expect = 2.933e-40
Identity = 119/284 (41.90%), Postives = 153/284 (53.87%), Query Frame = 0

Query:    5 STKIGQWFFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEHAFMCHMKNS-CGISDLYERDSGIECDLSMSETFKCAGDAADSKSPLSNGDDQDSDSEKSKNDDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFMARAPFLPPNARRFGPPPQADPRFCFPPNSMPFD-----YGGPGGFDPSCGGGGPYPGSMPPYGVPFPPNDHMTDLGYPQSIPPNPPPMSQGDGSPLDSFPSPPPQNHDF 282
            + KIG+  FH  C  C  C   + +G KV   + G ++CE    + ++K+S    +   +     + D S +          +S++P  N  D D+DS K   +  K+ KRRGPRTTIKAKQLEVLK  F Q PKPTR +REQLAKETGLPMRVIQVWFQNKRSK+KR++QM+F+    F P     F P P   P  CFPP  MP +     +  P  FDPSCG  GP      PY  P+   D+    G           MS+   SP   +PSPP Q+ DF
Sbjct:  118 ARKIGESLFHTHCFTCRDCSANLTEGDKVGCDHRGNLFCE----IDYIKHSNSSETSSDDTSQYFDLDNSNTRGSDELTVKRESQTPDLNNSDDDADS-KMDGEIGKDGKRRGPRTTIKAKQLEVLKTCFDQNPKPTRQVREQLAKETGLPMRVIQVWFQNKRSKQKRINQMQFITGHRFPPHMGMPFPPHPWGPPGHCFPPGGMPGEFPPPPHMFPPNFDPSCGPPGPPHHEYSPYP-PYSGPDYHDQSGR----------MSE---SPNHCYPSPPTQSSDF 382

[Close]

BLAST of lin-11 vs. nr
Match: gi|242011465|ref|XP_002426470.1| (LIM/homeobox protein Lhx3, putative [Pediculus humanus corporis] >gi|212510582|gb|EEB13732.1| LIM/homeobox protein Lhx3, putative [Pediculus humanus corporis])

HSP 1 Score: 146.747 bits (369), Expect = 6.376e-37
Identity = 98/258 (37.98%), Postives = 128/258 (49.61%), Query Frame = 0

Query:    1 MDQFSTKIGQWFFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEHAFMCHMKNSCGI------SDLYER--------------------DSGIECDLSMSETFKCAGDAADSKSPLS--NGDDQDSDSE---KSKNDDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFMARAPFLPPNARRFGPP-----------PQADPRFCFPPNSMPFDYGGPG 216
            +D+F   +    +H +CV C+ C+  +       +S +G ++C    F  +     G       SDL  +                     +G E  +     F C  D    K+     +GD +  DS+   KS +D +  +KRRGPRTTIKAKQLE+LKN FSQTPKPTR +REQLAKETGLPMRVIQVWFQNKRSKE+R+ Q+  M R PF   + +  G P           P   P F        F YGGPG
Sbjct:   41 LDKFLLNVLDRTWHAECVRCHDCRAAL---ADKCFSREGKLFCRNDFFRRYGTKCGGCLQGISPSDLVRKARDKVFHLNCFTCMVCRKQLSTGEELYVLDDNKFICKEDYLTGKTSSGSLDGDPETRDSQTENKSPDDGNSGSKRRGPRTTIKAKQLEILKNAFSQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLKQLTSMGRGPFFGSSRKMRGFPMNLSPGGLDDGPPGFPYFATADGKFEFGYGGPG 295

[Close]

BLAST of lin-11 vs. nr
Match: gi|1229694386|ref|XP_022126545.1| (LIM/homeobox protein Lhx1 isoform X2 [Pieris rapae])

HSP 1 Score: 144.821 bits (364), Expect = 2.605e-36
Identity = 115/316 (36.39%), Postives = 149/316 (47.15%), Query Frame = 0

Query:    7 KIGQWFFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEE---------HAFMCHMKNSCGISDLYERDS------------GIECDLSMSETFKCAGDAADSKSPLSNGDDQDSDSE-KSKNDDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFMARAPFLPPNARR--------------------------------FGPPPQADPRFCFPPNSMPFDYGGPGGFDPSCGGGGPYPGSMPPYGVPFPPNDHMTDLGYPQSIPPNPPPMSQGDGSP 268
            K  +  FH +C  C VC+  +  G ++    D    C+E         H+       S    D   R +             +  +LS +   K   D+ D  S   + + +DS +E KS +D +  +KRRGPRTTIKAKQLE+LK+ FSQTPKPTR +REQLAKETGLPMRVIQVWFQNKRSKE+R+ Q+  M R PF   + +                                 +GPP   D  F  PP SMPF+   PGG +   GG  P           FPP DH   LG P+   P+ P  + GD  P
Sbjct:   90 KAREKVFHLNCFTCLVCRKQLSTGEELYVLDDNKFICKEDYLAGKAPTHSDSLLGSGSDEEEDEESRTANNSSSPAHATHPALHSELSHNGDTKPHEDSEDQGSLDGDPETRDSQAENKSPDDGNGGSKRRGPRTTIKAKQLEILKSAFSQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLKQLTSMGRGPFFGSSRKMRGFPMNLSPGGLEEGPPGFPYFATADGKFEFGYGPPFHHDAPFFHPPPSMPFNQ--PGGMESLQGGEFP---------EQFPPPDH---LGLPR---PSSPEFTFGDAPP 388

[Close]

BLAST of lin-11 vs. nr
Match: gi|1133442506|ref|XP_019877714.1| (PREDICTED: LIM/homeobox protein Lhx1, partial [Aethina tumida])

HSP 1 Score: 143.28 bits (360), Expect = 3.694e-36
Identity = 98/257 (38.13%), Postives = 125/257 (48.64%), Query Frame = 0

Query:   12 FFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEH--------AFMCHMKNSCGISDLYERDS---------------------GIECDLSMSETFKCAGDAADSKSPLSNGDDQDS--------DSE---KSKNDDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFMARAPF-------------LPPNARRFGPPPQADPRFCFPPNSMPFDYGGP 215
             FH +C  C VC+ ++  G ++    D    C++         A   H  +  G +   E D                      G   + S++ +   +    DSK+   + +DQ+S        DS+   KS +D S  +KRRGPRTTIKAKQLE+LK  FSQTPKPTR +REQLAKETGLPMRVIQVWFQNKRSKE+R+ Q+  M R PF             L P     GPP    P F        F YGGP
Sbjct:   26 VFHLNCFTCLVCRKSLSTGEELYVLDDNKFICKDDYLSGNKGTALPHHQDSLMGSASEDEEDDDNSTASSVLKHHTIHSSLPAPGETNNNSLAHSDISSSIGQDSKTGQDDSEDQNSLDGDPETRDSQTENKSPDDSSAGSKRRGPRTTIKAKQLEILKTAFSQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLKQLTSMGRGPFFGGSRKMRGFPMNLSPGGLEDGPP--GFPYFATADGKFEFGYGGP 280

[Close]

BLAST of lin-11 vs. nr
Match: gi|1274134715|ref|XP_022831704.1| (LIM/homeobox protein Lhx5 isoform X3 [Spodoptera litura])

HSP 1 Score: 144.05 bits (362), Expect = 7.364e-36
Identity = 113/317 (35.65%), Postives = 146/317 (46.06%), Query Frame = 0

Query:    7 KIGQWFFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEHAFMCHMKNSCGISDLYERDS----------------------GIECDLSMSETFKCAGDAADSKSPLSNGDDQDSDSE-KSKNDDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFMARAPFLPPNARR--------------------------------FGPPPQADPRFCFPPNSMPFDYGGPGGFDPSCGGGGPYPGSMPPYGVPFPPNDHMTDLGYPQSIPPNPPPMSQGDGSP 268
            K  +  FH +C  C VC+  +  G ++    D    C+E             S L                            +  +LS +   K   D+ D  S   + + +DS +E KS +D +  +KRRGPRTTIKAKQLE+LK+ FSQTPKPTR +REQLAKETGLPMRVIQVWFQNKRSKE+R+ Q+  M R PF   + +                                 +GPP   D  F  PP +MPF+   PG F    GG    PG   P    FPP DH+     P+   P+ P  + GDG P
Sbjct:   89 KAREKVFHLNCFTCLVCRKQLSTGEELYVLDDNKFICKEDYLAGKAPTQHSDSLLGSGSDEEEEDESRAANNSSSPAHAPHPALHSELSHNGDTKPHDDSEDQGSLDGDPETRDSQAENKSPDDGNGGSKRRGPRTTIKAKQLEILKSAFSQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLKQLTSMGRGPFFGSSRKMRGFPMNLSPGGLEDGPPGFPYFATADGKFEFGYGPPFHHDAPFFHPPPAMPFNQ--PGRF---AGGMETLPGGEFP--EQFPPPDHLV---LPR---PSSPEFTFGDGPP 392

[Close]

BLAST of lin-11 vs. nr
Match: gi|1199376648|ref|XP_021182629.1| (LIM/homeobox protein Lhx1 isoform X3 [Helicoverpa armigera])

HSP 1 Score: 143.665 bits (361), Expect = 8.083e-36
Identity = 113/317 (35.65%), Postives = 146/317 (46.06%), Query Frame = 0

Query:    7 KIGQWFFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEEHAFMCHMKNSCGISDLYERDS----------------------GIECDLSMSETFKCAGDAADSKSPLSNGDDQDSDSE-KSKNDDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFMARAPFLPPNARR--------------------------------FGPPPQADPRFCFPPNSMPFDYGGPGGFDPSCGGGGPYPGSMPPYGVPFPPNDHMTDLGYPQSIPPNPPPMSQGDGSP 268
            K  +  FH +C  C VC+  +  G ++    D    C+E             S L                            +  +LS +   K   D+ D  S   + + +DS +E KS +D +  +KRRGPRTTIKAKQLE+LK+ FSQTPKPTR +REQLAKETGLPMRVIQVWFQNKRSKE+R+ Q+  M R PF   + +                                 +GPP   D  F  PP +MPF+   PG F    GG    PG   P    FPP DH+     P+   P+ P  + GDG P
Sbjct:   89 KAREKVFHLNCFTCLVCRKQLSTGEELYVLDDNKFICKEDYLAGKAPTQHSDSLLGSGSDEEEEDESRAANNSSSPAHAPHPALHSELSHNGDTKPHDDSEDQGSLDGDPETRDSQAENKSPDDGNGGSKRRGPRTTIKAKQLEILKSAFSQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLKQLTSMGRGPFFGSSRKMRGFPMNLSPGGLEEGPPGFPYFATADGKFEFGYGPPFHHDAPFFHPPPAMPFNQ--PGRF---AGGMETLPGGEFP--EQFPPPDHLV---LPR---PSSPEFTFGDGPP 392

[Close]

BLAST of lin-11 vs. nr
Match: gi|1229694388|ref|XP_022126627.1| (LIM/homeobox protein Lhx1 isoform X3 [Pieris rapae])

HSP 1 Score: 142.895 bits (359), Expect = 1.334e-35
Identity = 115/318 (36.16%), Postives = 149/318 (46.86%), Query Frame = 0

Query:    7 KIGQWFFHPDCVICNVCKITIPKGGKVQYSYDGYVYCEE---------HAFMCHMKNSCGISDLYERDS------------GIECDLSMSETFKCAGDAADSKSPLSNGDDQDSDSE-KSKNDDSKENKRRGPRTTIKAKQLEVLKNVFSQTPKPTRLMREQLAKETGLPMRVIQVWFQNKRSKEKRMHQMRFMARAPFLPPNARR--------------------------------FGPPPQADPRFCFPPNSMPFDYGG--PGGFDPSCGGGGPYPGSMPPYGVPFPPNDHMTDLGYPQSIPPNPPPMSQGDGSP 268
            K  +  FH +C  C VC+  +  G ++    D    C+E         H+       S    D   R +             +  +LS +   K   D+ D  S   + + +DS +E KS +D +  +KRRGPRTTIKAKQLE+LK+ FSQTPKPTR +REQLAKETGLPMRVIQVWFQNKRSKE+R+ Q+  M R PF   + +                                 +GPP   D  F  PP SMPF+  G   GG +   GG  P           FPP DH   LG P+   P+ P  + GD  P
Sbjct:   77 KAREKVFHLNCFTCLVCRKQLSTGEELYVLDDNKFICKEDYLAGKAPTHSDSLLGSGSDEEEDEESRTANNSSSPAHATHPALHSELSHNGDTKPHEDSEDQGSLDGDPETRDSQAENKSPDDGNGGSKRRGPRTTIKAKQLEILKSAFSQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRLKQLTSMGRGPFFGSSRKMRGFPMNLSPGGLEEGPPGFPYFATADGKFEFGYGPPFHHDAPFFHPPPSMPFNQPGRFAGGMESLQGGEFP---------EQFPPPDH---LGLPR---PSSPEFTFGDAPP 379

The following BLAST results are available for this feature:

BLAST of lin-11 vs. L. salmonis genes
BLAST of lin-11 vs. SwissProt
BLAST of lin-11 vs. nr

BLAST of lin-11 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25


Match Name	E-value	Identity	Description
EMLSAG00000008249	1.035e-74	58.29	supercontig:LSalAtl2s:LSalAtl2s498:40217:45202:1 g...	[more]
EMLSAG00000008243	2.354e-32	44.79	supercontig:LSalAtl2s:LSalAtl2s498:126445:127976:-...	[more]
EMLSAG00000002055	3.685e-31	38.57	supercontig:LSalAtl2s:LSalAtl2s1373:69728:71167:-1...	[more]
EMLSAG00000008242	1.977e-24	37.17	supercontig:LSalAtl2s:LSalAtl2s498:108992:109816:-...	[more]
EMLSAG00000003616	2.306e-23	73.44	supercontig:LSalAtl2s:LSalAtl2s19813:128:427:1 gen...	[more]
EMLSAG00000010483	1.785e-18	34.09	supercontig:LSalAtl2s:LSalAtl2s696:31985:42695:-1 ...	[more]
EMLSAG00000004956	5.215e-14	42.05	supercontig:LSalAtl2s:LSalAtl2s260:1196109:1202410...	[more]
EMLSAG00000006341	1.369e-13	46.48	supercontig:LSalAtl2s:LSalAtl2s346:279696:285335:-...	[more]
EMLSAG00000004639	4.063e-12	39.76	supercontig:LSalAtl2s:LSalAtl2s241:596930:621161:-...	[more]
EMLSAG00000004664	8.060e-12	31.69	supercontig:LSalAtl2s:LSalAtl2s242:897246:900136:1...	[more]

Pages

BLAST of lin-11 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|2506818\|sp\|P20154.2\|LIN11_CAEEL	7.052e-37	45.36	RecName: Full=Protein lin-11; AltName: Full=Abnorm...	[more]
gi\|60416412\|sp\|P48742.2\|LHX1_HUMAN	1.894e-32	38.17	RecName: Full=LIM/homeobox protein Lhx1; Short=LIM...	[more]
gi\|1708826\|sp\|P53411.1\|LHX1_CHICK	1.914e-32	34.49	RecName: Full=LIM/homeobox protein Lhx1; Short=LIM...	[more]
gi\|60389888\|sp\|Q5IS44.1\|LHX1_PANTR	3.710e-32	38.17	RecName: Full=LIM/homeobox protein Lhx1; Short=LIM...	[more]
gi\|51702761\|sp\|P63007.1\|LHX1_RAT	3.748e-32	38.17	RecName: Full=LIM/homeobox protein Lhx1; Short=LIM...	[more]
gi\|267419\|sp\|P29674.1\|LHX1_XENLA	2.819e-31	35.13	RecName: Full=LIM/homeobox protein Lhx1; Short=LIM...	[more]
gi\|47606426\|sp\|P61376.1\|LHX5_RAT	2.863e-31	41.45	RecName: Full=LIM/homeobox protein Lhx5; Short=LIM...	[more]
gi\|18202938\|sp\|Q9H2C1.1\|LHX5_HUMAN	3.843e-31	40.93	RecName: Full=LIM/homeobox protein Lhx5; Short=LIM...	[more]
gi\|2497670\|sp\|Q90476.1\|LHX1_DANRE	1.730e-30	35.80	RecName: Full=LIM/homeobox protein Lhx1; Short=LIM...	[more]
gi\|1708831\|sp\|P37137.2\|LHX5_XENLA	2.611e-30	40.31	RecName: Full=LIM/homeobox protein Lhx5; Short=LIM...	[more]

Pages

BLAST of lin-11 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1325282503\|ref\|XP_023325946.1\|	8.904e-47	39.83	LIM/homeobox protein Lhx1-like [Eurytemora affinis...	[more]
gi\|1325322960\|ref\|XP_023343309.1\|	6.861e-45	41.29	protein lin-11-like [Eurytemora affinis]	[more]
gi\|1325282510\|ref\|XP_023325949.1\|	8.555e-45	41.18	LIM/homeobox protein Lhx5-like [Eurytemora affinis...	[more]
gi\|1325282506\|ref\|XP_023325947.1\|	2.933e-40	41.90	LIM/homeobox protein Lhx1-like [Eurytemora affinis...	[more]
gi\|242011465\|ref\|XP_002426470.1\|	6.376e-37	37.98	LIM/homeobox protein Lhx3, putative [Pediculus hum...	[more]
gi\|1229694386\|ref\|XP_022126545.1\|	2.605e-36	36.39	LIM/homeobox protein Lhx1 isoform X2 [Pieris rapae...	[more]
gi\|1133442506\|ref\|XP_019877714.1\|	3.694e-36	38.13	PREDICTED: LIM/homeobox protein Lhx1, partial [Aet...	[more]
gi\|1274134715\|ref\|XP_022831704.1\|	7.364e-36	35.65	LIM/homeobox protein Lhx5 isoform X3 [Spodoptera l...	[more]
gi\|1199376648\|ref\|XP_021182629.1\|	8.083e-36	35.65	LIM/homeobox protein Lhx1 isoform X3 [Helicoverpa ...	[more]
gi\|1229694388\|ref\|XP_022126627.1\|	1.334e-35	36.16	LIM/homeobox protein Lhx1 isoform X3 [Pieris rapae...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold355_size198070	supercontig	scaffold355_size198070:142941..143975 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	F:metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold355_size198070-processed-gene-0.21-mRNA-1	snap_masked-scaffold355_size198070-processed-gene-0.21-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold355_size198070:142941..143975-

gene from alignment at scaffold355_size198070:142941..143975-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold355_size198070-processed-gene-0.21 ID=snap_masked-scaffold355_size198070-processed-gene-0.21|Name=lin-11|organism=Tigriopus kingsejongensis|type=gene|length=1035bp|location=Sequence derived from alignment at scaffold355_size198070:142941..143975- (Tigriopus kingsejongensis)
ATGGACCAGTTCTCTACCAAGATAGGCCAGTGGTTCTTTCATCCAGACTG
TGTGATCTGTAATGTGTGCAAGATCACCATTCCCAAGGGCGGCAAGGTCC
AGTATTCCTACGACGGGTATGTCTATTGTGAGGAGCATGCCTTCATGTGC
CATATGAAAAACTCCTGCGGCATCTCGGACCTGTACGAGAGAGACTCGGG
CATTGAGTGCGACCTGTCCATGAGTGAGACATTCAAATGTGCGGGCGATG
CCGCCGATTCCAAAAGTCCCCTCTCCAATGGAGACGACCAGGACTCGGAC
TCGGAGAAGAGCAAGAACGACGATAGCAAGGAGAACAAGCGACGAGGTCC
CCGGACCACGATCAAGGCCAAGCAGTTGGAGGTCCTGAAGAATGTGTTCT
CACAAACCCCCAAACCCACCCGCCTCATGCGGGAGCAGCTCGCCAAGGAG
ACGGGGCTGCCCATGCGGGTCATTCAAGTGTGGTTCCAGAACAAGCGCAG
CAAAGAAAAGCGCATGCACCAGATGCGCTTCATGGCCCGGGCCCCCTTCC
TCCCGCCCAATGCCCGCAGGTTTGGCCCGCCACCTCAAGCTGATCCGCGC
TTCTGTTTTCCGCCCAACTCCATGCCCTTCGACTACGGAGGCCCCGGAGG
CTTCGATCCGTCTTGTGGAGGCGGGGGACCGTATCCCGGCTCCATGCCTC
CCTATGGTGTGCCATTTCCCCCCAACGACCATATGACCGACTTGGGCTAT
CCCCAATCCATCCCACCCAATCCTCCTCCCATGAGTCAGGGCGACGGTTC
TCCGCTCGACTCATTCCCCTCGCCCCCGCCCCAGAACCACGATTTCCACA
CCCCGCCCCCACCCCAGGGCAACGGTGGGAGTGACTATGGGGGTGGTGGA
ACGGACCAATGCTTCCCATCCCCTCCACTTAGTCTCGAATTGCCCACGTC
ATCATCGTCCGGGTGCTCCAGCTCGGCTGCATCCAGCTCGGCCATCGCTG
CGGTGGGTGGGAGCACCAACCATTGTAGTTCCTAG

Synonyms

The feature 'lin-11' has the following synonyms


Synonym
Tk03309

Add to Basket

Pages

Pages

Pages

Search form