transcription antitermination protein, snap_masked-scaffold358_size197577-processed-gene-0.8 (gene) Tigriopus kingsejongensis

Overview
Nametranscription antitermination protein
Unique Namesnap_masked-scaffold358_size197577-processed-gene-0.8
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of transcription antitermination protein vs. L. salmonis genes
Match: EMLSAG00000002399 (supercontig:LSalAtl2s:LSalAtl2s145:1549404:1550032:-1 gene:EMLSAG00000002399 transcript:EMLSAT00000002399 description:"maker-LSalAtl2s145-augustus-gene-15.24")

HSP 1 Score: 86.2705 bits (212), Expect = 8.159e-21
Identity = 48/130 (36.92%), Postives = 74/130 (56.92%), Query Frame = 0 
Query:  155 VPAGKANPSPPVGPALGQRGINIMEFCKAFNAATQEMETGAPCPTVITYYADKSFSMEIKTPPASHFIKKAAKLTAGSKLPGRSVAGSITGKQVREIAEAKMKD--LNATSIEGAMLIIAGSARSMGIEV 282
            +PA  A+P PP+G  LG+ G+NI  F K FN  T   + G P P  IT  AD+S ++ +  PP  +F+K+AA ++ G+      + G +T K V EIA+ K +D  L    ++  +  I  SAR +GI++
Sbjct:   24 IPAQMASPGPPLGSQLGELGVNIASFIKDFNLKTSIFKAGVPIPCKITLNADRSHNLVMAHPPFEYFLKQAAGISRGAM--KNEIVGMVTRKHVYEIAKLKSEDPLLQMIDLQEIVQRICVSARRVGIKI 151
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BLAST of transcription antitermination protein vs. SwissProt
Match: gi|118597289|sp|Q160X3.1|RL11_ROSDO (RecName: Full=50S ribosomal protein L11)

HSP 1 Score: 223.402 bits (568), Expect = 3.938e-73
Identity = 105/132 (79.55%), Postives = 119/132 (90.15%), Query Frame = 0 
Query:  152 RLKVPAGKANPSPPVGPALGQRGINIMEFCKAFNAATQEMETGAPCPTVITYYADKSFSMEIKTPPASHFIKKAAKLTAGSKLPGRSVAGSITGKQVREIAEAKMKDLNATSIEGAMLIIAGSARSMGIEVK 283
            +L+VPAG+ANPSPPVGPALGQRGINIMEFCKAFNA T +ME GAPCPTVITYY DKSF+M+IKTPPAS+++KKAAKL++G+K P R V G ++ KQVREIAEAKMKDLNATSIE AM II GSARSMGIEVK
Sbjct:   10 KLQVPAGQANPSPPVGPALGQRGINIMEFCKAFNAKTADMEQGAPCPTVITYYQDKSFTMDIKTPPASYYLKKAAKLSSGAKTPSREVVGYVSSKQVREIAEAKMKDLNATSIEAAMKIILGSARSMGIEVK 141
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BLAST of transcription antitermination protein vs. SwissProt
Match: gi|81676082|sp|Q5LMP9.1|RL11_RUEPO (RecName: Full=50S ribosomal protein L11)

HSP 1 Score: 216.468 bits (550), Expect = 2.888e-70
Identity = 101/132 (76.52%), Postives = 116/132 (87.88%), Query Frame = 0 
Query:  152 RLKVPAGKANPSPPVGPALGQRGINIMEFCKAFNAATQEMETGAPCPTVITYYADKSFSMEIKTPPASHFIKKAAKLTAGSKLPGRSVAGSITGKQVREIAEAKMKDLNATSIEGAMLIIAGSARSMGIEVK 283
            +L+VPAGKANPSPPVGPALGQRGINIMEFCKAFNA T +ME GAPCPTVI+YY DKSF+M+IKTPPAS+F+KKAAK+ +G+  P R  AG++T  Q+REIAEAKMKDLNA  I+GAM II GSARSMGIEVK
Sbjct:   10 KLQVPAGKANPSPPVGPALGQRGINIMEFCKAFNAKTADMEVGAPCPTVISYYQDKSFTMDIKTPPASYFLKKAAKIQSGANKPSRETAGTVTVAQIREIAEAKMKDLNANDIDGAMQIILGSARSMGIEVK 141
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BLAST of transcription antitermination protein vs. SwissProt
Match: gi|189040957|sp|A8LLJ9.1|RL11_DINSH (RecName: Full=50S ribosomal protein L11)

HSP 1 Score: 215.698 bits (548), Expect = 5.318e-70
Identity = 100/132 (75.76%), Postives = 116/132 (87.88%), Query Frame = 0 
Query:  152 RLKVPAGKANPSPPVGPALGQRGINIMEFCKAFNAATQEMETGAPCPTVITYYADKSFSMEIKTPPASHFIKKAAKLTAGSKLPGRSVAGSITGKQVREIAEAKMKDLNATSIEGAMLIIAGSARSMGIEVK 283
            +L+VPAG+ANPSPPVGPALGQRGINIMEFCKAFNA TQ+ME GAPCPTVITYY DKSF+MEIKTPPA++++KKAAK+ +G+  P R   G++T  QVREIAEAKM+DLNA  IEGAM I+ GSARSMGIEVK
Sbjct:   10 KLQVPAGQANPSPPVGPALGQRGINIMEFCKAFNAKTQDMEPGAPCPTVITYYQDKSFTMEIKTPPAAYYLKKAAKVKSGASTPSRQTVGTVTVAQVREIAEAKMRDLNANDIEGAMKIVLGSARSMGIEVK 141
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BLAST of transcription antitermination protein vs. SwissProt
Match: gi|118597296|sp|Q1GK54.1|RL11_RUEST (RecName: Full=50S ribosomal protein L11)

HSP 1 Score: 213.772 bits (543), Expect = 2.669e-69
Identity = 100/132 (75.76%), Postives = 115/132 (87.12%), Query Frame = 0 
Query:  152 RLKVPAGKANPSPPVGPALGQRGINIMEFCKAFNAATQEMETGAPCPTVITYYADKSFSMEIKTPPASHFIKKAAKLTAGSKLPGRSVAGSITGKQVREIAEAKMKDLNATSIEGAMLIIAGSARSMGIEVK 283
            +L+VPAG+ANPSPPVGPALGQRGINIMEFCKAFNA T +ME GAPCPTVITYY DKSF+M+IKTPPAS+++KKAAK+ +G+  P R  AG++T  QV+EIAEAKMKDLNA  IE AM II GSARSMGIEVK
Sbjct:   10 KLQVPAGQANPSPPVGPALGQRGINIMEFCKAFNAKTADMEPGAPCPTVITYYQDKSFTMDIKTPPASYYLKKAAKIKSGANNPSRETAGTVTAAQVKEIAEAKMKDLNANDIEAAMQIILGSARSMGIEVK 141
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BLAST of transcription antitermination protein vs. SwissProt
Match: gi|118597249|sp|Q28UY2.1|RL11_JANSC (RecName: Full=50S ribosomal protein L11)

HSP 1 Score: 202.986 bits (515), Expect = 7.009e-65
Identity = 99/140 (70.71%), Postives = 114/140 (81.43%), Query Frame = 0 
Query:  152 RLKVPAGKANPSPPVGPALGQRGINIMEFCKAFNAATQEMETGAPCPTVITYYADKSFSMEIKTPPASHFIKKAAKLTA--------GSKLPGRSVAGSITGKQVREIAEAKMKDLNATSIEGAMLIIAGSARSMGIEVK 283
            +L++PAG+ANPSPPVGPALGQRGINIMEFCKAFNA TQEME GAPCPTVITYY DKSF+M+IKTPPAS+++KKAA L          G++ PGR    SIT KQ+REIAEAKM DL+A  +E AM II GSA+SMGIEVK
Sbjct:   10 KLQIPAGQANPSPPVGPALGQRGINIMEFCKAFNAKTQEMEQGAPCPTVITYYQDKSFTMDIKTPPASYYLKKAAGLKPVGKRNRPRGAETPGRETVASITSKQLREIAEAKMVDLSANDVEAAMKIILGSAKSMGIEVK 149
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BLAST of transcription antitermination protein vs. SwissProt
Match: gi|166230907|sp|A1B011.1|RL11_PARDP (RecName: Full=50S ribosomal protein L11)

HSP 1 Score: 198.364 bits (503), Expect = 4.385e-63
Identity = 99/140 (70.71%), Postives = 111/140 (79.29%), Query Frame = 0 
Query:  152 RLKVPAGKANPSPPVGPALGQRGINIMEFCKAFNAATQEMETGAPCPTVITYYADKSFSMEIKTPPASHFIKKAAKL--------TAGSKLPGRSVAGSITGKQVREIAEAKMKDLNATSIEGAMLIIAGSARSMGIEVK 283
            +L++ AG+ANPSPPVGPALGQRGINIMEFCKAFNA TQEME GAP P VITYYADKSF+ E KTPPAS  +KKAA L          GS+ PGR  AG++T KQVREIAEAKMKDL+A  +E AM II GSARS+GIEVK
Sbjct:   10 KLQIKAGQANPSPPVGPALGQRGINIMEFCKAFNAKTQEMEQGAPVPVVITYYADKSFTFETKTPPASFLLKKAAGLKPQGKRNRAKGSEKPGRQTAGTVTAKQVREIAEAKMKDLSANDVEAAMQIILGSARSIGIEVK 149
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BLAST of transcription antitermination protein vs. SwissProt
Match: gi|38605326|sp|Q8G065.1|RL11_BRUSU (RecName: Full=50S ribosomal protein L11 >gi|38605402|sp|Q8YHQ1.1|RL11_BRUME RecName: Full=50S ribosomal protein L11 >gi|75505259|sp|Q57CP4.1|RL11_BRUAB RecName: Full=50S ribosomal protein L11 >gi|118597139|sp|Q2YM11.1|RL11_BRUA2 RecName: Full=50S ribosomal protein L11 >gi|189040946|sp|A9M5R4.1|RL11_BRUC2 RecName: Full=50S ribosomal protein L11 >gi|189040947|sp|B0CH45.1|RL11_BRUSI RecName: Full=50S ribosomal protein L11 >gi|226700054|sp|B2S691.1|RL11_BRUA1 RecName: Full=50S ribosomal protein L11 >gi|254798421|sp|C0RJL5.1|RL11_BRUMB RecName: Full=50S ribosomal protein L11)

HSP 1 Score: 197.978 bits (502), Expect = 5.516e-63
Identity = 92/131 (70.23%), Postives = 111/131 (84.73%), Query Frame = 0 
Query:  152 RLKVPAGKANPSPPVGPALGQRGINIMEFCKAFNAATQEMETGAPCPTVITYYADKSFSMEIKTPPASHFIKKAAKLTAGSKLPGRSVAGSITGKQVREIAEAKMKDLNATSIEGAMLIIAGSARSMGIEV 282
            +L+VPAG ANPSPP+GPALGQRGINIMEFCKAFNAA+QEME G+P P +ITYY DKSF+  +KTPP ++F+KKAA L +GSK PG++ AG+IT  +VR IAEAKMKDLNA  +E AM +I GSARSMG+EV
Sbjct:   10 KLQVPAGAANPSPPIGPALGQRGINIMEFCKAFNAASQEMEKGSPIPVLITYYQDKSFTFVMKTPPVTYFLKKAANLKSGSKTPGKASAGTITRDKVRAIAEAKMKDLNAADVEAAMRMIEGSARSMGLEV 140
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BLAST of transcription antitermination protein vs. SwissProt
Match: gi|166230108|sp|A5VR19.1|RL11_BRUO2 (RecName: Full=50S ribosomal protein L11)

HSP 1 Score: 197.208 bits (500), Expect = 9.608e-63
Identity = 91/131 (69.47%), Postives = 111/131 (84.73%), Query Frame = 0 
Query:  152 RLKVPAGKANPSPPVGPALGQRGINIMEFCKAFNAATQEMETGAPCPTVITYYADKSFSMEIKTPPASHFIKKAAKLTAGSKLPGRSVAGSITGKQVREIAEAKMKDLNATSIEGAMLIIAGSARSMGIEV 282
            +L++PAG ANPSPP+GPALGQRGINIMEFCKAFNAA+QEME G+P P +ITYY DKSF+  +KTPP ++F+KKAA L +GSK PG++ AG+IT  +VR IAEAKMKDLNA  +E AM +I GSARSMG+EV
Sbjct:   10 KLQIPAGAANPSPPIGPALGQRGINIMEFCKAFNAASQEMEKGSPIPVLITYYQDKSFTFVMKTPPVTYFLKKAANLKSGSKTPGKASAGTITRDKVRAIAEAKMKDLNAADVEAAMRMIEGSARSMGLEV 140
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BLAST of transcription antitermination protein vs. SwissProt
Match: gi|38605419|sp|Q92QI1.1|RL11_RHIME (RecName: Full=50S ribosomal protein L11)

HSP 1 Score: 196.052 bits (497), Expect = 2.731e-62
Identity = 92/131 (70.23%), Postives = 109/131 (83.21%), Query Frame = 0 
Query:  152 RLKVPAGKANPSPPVGPALGQRGINIMEFCKAFNAATQEMETGAPCPTVITYYADKSFSMEIKTPPASHFIKKAAKLTAGSKLPGRSVAGSITGKQVREIAEAKMKDLNATSIEGAMLIIAGSARSMGIEV 282
            +L+V AG ANPSPP+GPALGQRGINIMEFCKAFNAATQEME G P P VITYY DKSF+  +K PP S+F+K+ AK+ AGSK PG++ AGSI+  Q+R IAEAKMKDLNA  I+GAM ++ GSARSMG+EV
Sbjct:   10 KLQVKAGSANPSPPIGPALGQRGINIMEFCKAFNAATQEMEKGMPIPVVITYYQDKSFTFVMKQPPVSYFLKREAKVQAGSKTPGKAKAGSISKAQIRTIAEAKMKDLNAADIDGAMAMVEGSARSMGLEV 140
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BLAST of transcription antitermination protein vs. SwissProt
Match: gi|254798456|sp|C3MAW7.1|RL11_RHISN (RecName: Full=50S ribosomal protein L11)

HSP 1 Score: 196.052 bits (497), Expect = 3.079e-62
Identity = 92/131 (70.23%), Postives = 109/131 (83.21%), Query Frame = 0 
Query:  152 RLKVPAGKANPSPPVGPALGQRGINIMEFCKAFNAATQEMETGAPCPTVITYYADKSFSMEIKTPPASHFIKKAAKLTAGSKLPGRSVAGSITGKQVREIAEAKMKDLNATSIEGAMLIIAGSARSMGIEV 282
            +L+V AG ANPSPP+GPALGQRGINIMEFCKAFNAATQEME G P P VITYY DKSF+  +K PP S+F+K+ AK+ +GSK PG++ AGSI+  Q+R IAEAKMKDLNA  IEGAM ++ GSARSMG+EV
Sbjct:   10 KLQVKAGSANPSPPIGPALGQRGINIMEFCKAFNAATQEMEKGMPIPVVITYYQDKSFTFIMKQPPVSYFLKREAKIQSGSKTPGKAKAGSISKAQIRTIAEAKMKDLNAADIEGAMAMVEGSARSMGLEV 140
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BLAST of transcription antitermination protein vs. nr
Match: gi|1282010453|ref|WP_100369328.1| (transcription termination/antitermination protein NusG [Loktanella maricola] >gi|1280208447|gb|PJI85410.1| transcription antitermination protein nusG [Loktanella maricola])

HSP 1 Score: 305.834 bits (782), Expect = 1.628e-102
Identity = 148/165 (89.70%), Postives = 155/165 (93.94%), Query Frame = 0 
Query:    1 MAKRWYSVSVLSNFEKKIAETIRQKAEEQGLSEQIEEVLVPTEEVIEVRRNKKVTAERRFMPGYVLVRMDMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVEEGQDAPRTLIHFEIGEKVKVSDGPFEDFDGMVEEVDEENSRLKVPA---GKANP 162
            MAKRWYSVSVLSNFEKKIAE IRQKAEEQGL EQI+EVLVPTEEVIE+RRNKKVTAERRFMPGYVLV M+MSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRV+EG+DAPRTLIHFEIGEKVKV+DGPFEDFDGMVEEVDEEN RLKV     G+A P
Sbjct:    1 MAKRWYSVSVLSNFEKKIAEAIRQKAEEQGLDEQIDEVLVPTEEVIEIRRNKKVTAERRFMPGYVLVHMEMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVQEGEDAPRTLIHFEIGEKVKVNDGPFEDFDGMVEEVDEENQRLKVTVSIFGRATP 165
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BLAST of transcription antitermination protein vs. nr
Match: gi|1221914164|ref|WP_089997352.1| (transcription termination/antitermination protein NusG [Loktanella koreensis] >gi|1094439381|emb|SEW47616.1| transcription antitermination protein nusG [Loktanella koreensis])

HSP 1 Score: 304.679 bits (779), Expect = 4.870e-102
Identity = 149/165 (90.30%), Postives = 155/165 (93.94%), Query Frame = 0 
Query:    1 MAKRWYSVSVLSNFEKKIAETIRQKAEEQGLSEQIEEVLVPTEEVIEVRRNKKVTAERRFMPGYVLVRMDMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVEEGQDAPRTLIHFEIGEKVKVSDGPFEDFDGMVEEVDEENSRLKVPA---GKANP 162
            MAKRWYSVSVLSNFEKKIAETIRQKAEEQGLS+QI+EVLVPTEEVIEVRRNKKVTAERRFMPGYVLV M+MSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVEEGQ+APRTLIHFEIGEKVKV+DGPFEDFDGMVEEVDE   RLKV     G+A P
Sbjct:    1 MAKRWYSVSVLSNFEKKIAETIRQKAEEQGLSDQIDEVLVPTEEVIEVRRNKKVTAERRFMPGYVLVHMEMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVEEGQEAPRTLIHFEIGEKVKVNDGPFEDFDGMVEEVDEAEQRLKVTVSIFGRATP 165
[Close]
BLAST of transcription antitermination protein vs. nr
Match: gi|495508363|ref|WP_008233009.1| (transcription termination/antitermination protein NusG [Roseobacter sp. CCS2] >gi|126715313|gb|EBA12178.1| transcription antitermination protein NusG [Roseobacter sp. CCS2])

HSP 1 Score: 304.294 bits (778), Expect = 6.604e-102
Identity = 146/165 (88.48%), Postives = 156/165 (94.55%), Query Frame = 0 
Query:    1 MAKRWYSVSVLSNFEKKIAETIRQKAEEQGLSEQIEEVLVPTEEVIEVRRNKKVTAERRFMPGYVLVRMDMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVEEGQDAPRTLIHFEIGEKVKVSDGPFEDFDGMVEEVDEENSRLKVPA---GKANP 162
            MAKRWYSVSVLSNFEKKIAE IRQKA+EQGLS+QI+EVLVPTEEVIE+RRNKKVTAERRFMPGYVLV M+MSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRV+EG+DAPRTLIHFEIGEKVKV+DGPFEDFDGMVEEVD+EN RLKV     G+A P
Sbjct:    1 MAKRWYSVSVLSNFEKKIAEAIRQKADEQGLSDQIDEVLVPTEEVIEIRRNKKVTAERRFMPGYVLVHMEMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVQEGEDAPRTLIHFEIGEKVKVNDGPFEDFDGMVEEVDDENQRLKVTVSIFGRATP 165
[Close]
BLAST of transcription antitermination protein vs. nr
Match: gi|942094343|ref|WP_055296201.1| (MULTISPECIES: transcription termination/antitermination protein NusG [Loktanella] >gi|941330264|gb|KQB95936.1| antitermination protein NusG [Loktanella sp. 1ANDIMAR09] >gi|943688767|gb|KQI71080.1| antitermination protein NusG [Loktanella sp. 5RATIMAR09] >gi|1133994416|emb|SIT91310.1| transcription antitermination protein nusG [Loktanella rosea])

HSP 1 Score: 303.908 bits (777), Expect = 8.682e-102
Identity = 147/165 (89.09%), Postives = 155/165 (93.94%), Query Frame = 0 
Query:    1 MAKRWYSVSVLSNFEKKIAETIRQKAEEQGLSEQIEEVLVPTEEVIEVRRNKKVTAERRFMPGYVLVRMDMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVEEGQDAPRTLIHFEIGEKVKVSDGPFEDFDGMVEEVDEENSRLKVPA---GKANP 162
            MAKRWYSVSVLSNFEKKIAE IR KAEEQGLS+QI+EVLVPTEEVIE+RRNKKVTAERRFMPGYVLV M+MSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRV+EG+DAPRTLIHFEIGEKVKV+DGPFEDFDGMVEEVDEEN RLKV     G+A P
Sbjct:    1 MAKRWYSVSVLSNFEKKIAEAIRTKAEEQGLSDQIDEVLVPTEEVIEIRRNKKVTAERRFMPGYVLVHMEMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVQEGEDAPRTLIHFEIGEKVKVNDGPFEDFDGMVEEVDEENQRLKVTVSIFGRATP 165
[Close]
BLAST of transcription antitermination protein vs. nr
Match: gi|800971749|ref|WP_045998408.1| (transcription termination/antitermination protein NusG [Loktanella sp. S4079] >gi|798771010|gb|KJZ18153.1| antitermination protein NusG [Loktanella sp. S4079])

HSP 1 Score: 300.442 bits (768), Expect = 1.879e-100
Identity = 146/172 (84.88%), Postives = 155/172 (90.12%), Query Frame = 0 
Query:    1 MAKRWYSVSVLSNFEKKIAETIRQKAEEQGLSEQIEEVLVPTEEVIEVRRNKKVTAERRFMPGYVLVRMDMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVEEGQDAPRTLIHFEIGEKVKVSDGPFEDFDGMVEEVDEENSRLKVPAGKANPSPPVGPALGQ 172
            MAKRWYSVSVLSNFEKKIAE IR KAEEQGLSEQI+EVLVPTEEVIEVRRNKKVT ERRFMPGYVLV M+MSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRV+EG++APRTLIHFEIGEKVKV+DGPFEDFDG+VEEVD+EN RLKV       + PV    GQ
Sbjct:    1 MAKRWYSVSVLSNFEKKIAEAIRTKAEEQGLSEQIDEVLVPTEEVIEVRRNKKVTTERRFMPGYVLVHMEMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVQEGEEAPRTLIHFEIGEKVKVNDGPFEDFDGLVEEVDDENQRLKVTVSIFGRATPVELEYGQ 172
[Close]
BLAST of transcription antitermination protein vs. nr
Match: gi|1120027484|ref|WP_072901850.1| (transcription termination/antitermination protein NusG [Loktanella sediminum] >gi|1109847369|emb|SHH27499.1| transcription antitermination protein nusG [Loktanella sediminum])

HSP 1 Score: 296.204 bits (757), Expect = 9.750e-99
Identity = 144/165 (87.27%), Postives = 153/165 (92.73%), Query Frame = 0 
Query:    1 MAKRWYSVSVLSNFEKKIAETIRQKAEEQGLSEQIEEVLVPTEEVIEVRRNKKVTAERRFMPGYVLVRMDMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVEEGQDAPRTLIHFEIGEKVKVSDGPFEDFDGMVEEVDEENSRLKVPA---GKANP 162
            MAKRWYSVSVLSNFEKKIAETIRQKAEE GLS+QI+EVLVPTEEVIEVRRNKKVTAERRFMPGYVLV M+MSDEGYHLINSINRVTGFLGPQGRPMPMRDAEV AIL RVEEGQ+APRTLI FE+GEKVKV+DGPFEDFDG+VEEVD+EN RLKV     G+A P
Sbjct:    1 MAKRWYSVSVLSNFEKKIAETIRQKAEELGLSDQIDEVLVPTEEVIEVRRNKKVTAERRFMPGYVLVHMEMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVNAILNRVEEGQEAPRTLISFEVGEKVKVNDGPFEDFDGLVEEVDDENQRLKVTVSIFGRATP 165
[Close]
BLAST of transcription antitermination protein vs. nr
Match: gi|1361161455|ref|WP_106358368.1| (transcription termination/antitermination protein NusG [Loktanella maritima] >gi|1360115357|gb|PRY76247.1| transcription antitermination protein nusG [Loktanella maritima])

HSP 1 Score: 296.204 bits (757), Expect = 1.019e-98
Identity = 143/165 (86.67%), Postives = 153/165 (92.73%), Query Frame = 0 
Query:    1 MAKRWYSVSVLSNFEKKIAETIRQKAEEQGLSEQIEEVLVPTEEVIEVRRNKKVTAERRFMPGYVLVRMDMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVEEGQDAPRTLIHFEIGEKVKVSDGPFEDFDGMVEEVDEENSRLKVPA---GKANP 162
            MAKRWYSVSVLSNFEKKIAE IR KAEEQGL+EQI EVLVPTEEVIE+RRNKKVT ERRFMPGYVLV M+MSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRV+EG+DAPRTLIHF+IGEKVKV++GPFEDFDGMVEEVD+EN RLKV     G+A P
Sbjct:    1 MAKRWYSVSVLSNFEKKIAEAIRTKAEEQGLAEQIGEVLVPTEEVIEIRRNKKVTTERRFMPGYVLVHMEMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVQEGEDAPRTLIHFDIGEKVKVNEGPFEDFDGMVEEVDDENQRLKVTVSIFGRATP 165
[Close]
BLAST of transcription antitermination protein vs. nr
Match: gi|1119980828|ref|WP_072857353.1| (transcription termination/antitermination protein NusG [Loktanella atrilutea] >gi|1110113344|emb|SHF20563.1| transcription antitermination protein nusG [Loktanella atrilutea])

HSP 1 Score: 295.819 bits (756), Expect = 1.432e-98
Identity = 142/165 (86.06%), Postives = 152/165 (92.12%), Query Frame = 0 
Query:    1 MAKRWYSVSVLSNFEKKIAETIRQKAEEQGLSEQIEEVLVPTEEVIEVRRNKKVTAERRFMPGYVLVRMDMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVEEGQDAPRTLIHFEIGEKVKVSDGPFEDFDGMVEEVDEENSRLKVPA---GKANP 162
            MAKRWYSVSVLSNFEKKIAETIRQK  EQGL EQI+EVLVPTEEVIE+RRNKKVT ERRFMPGYVLV M++SDEGYHLINSINRVTGFLGPQGRP PMRDAEVQAILGRV+EG+D+PRTLIHFEIGEKVKV+DGPFEDFDGMVEEVDE+N RLKV     G+A P
Sbjct:    1 MAKRWYSVSVLSNFEKKIAETIRQKVAEQGLEEQIDEVLVPTEEVIEIRRNKKVTTERRFMPGYVLVHMELSDEGYHLINSINRVTGFLGPQGRPSPMRDAEVQAILGRVQEGEDSPRTLIHFEIGEKVKVNDGPFEDFDGMVEEVDEDNQRLKVTVSIFGRATP 165
[Close]
BLAST of transcription antitermination protein vs. nr
Match: gi|494388894|ref|WP_007206590.1| (transcription termination/antitermination protein NusG [Loktanella vestfoldensis] >gi|84511350|gb|EAQ07804.1| transcription termination/antitermination factor NusG [Loktanella vestfoldensis SKA53] >gi|1198346822|gb|ART99563.1| hypothetical protein LOKVESSMR4R_00222 [Loktanella vestfoldensis])

HSP 1 Score: 295.434 bits (755), Expect = 1.722e-98
Identity = 143/165 (86.67%), Postives = 153/165 (92.73%), Query Frame = 0 
Query:    1 MAKRWYSVSVLSNFEKKIAETIRQKAEEQGLSEQIEEVLVPTEEVIEVRRNKKVTAERRFMPGYVLVRMDMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVEEGQDAPRTLIHFEIGEKVKVSDGPFEDFDGMVEEVDEENSRLKVPA---GKANP 162
            MAKRWYSVSVLSNFEKKIAE IR KAEE+GLS+QI+EVLVPTEEVIEVRRNKKVT ERRFMPGYVLV M+MSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRV+EG+D+PRTLIHFEIGEKVKV+DGPFEDFDGMVE VDEE+ RLKV     G+A P
Sbjct:    1 MAKRWYSVSVLSNFEKKIAEAIRAKAEEKGLSDQIDEVLVPTEEVIEVRRNKKVTTERRFMPGYVLVHMEMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVQEGEDSPRTLIHFEIGEKVKVNDGPFEDFDGMVEYVDEEHQRLKVTVSIFGRATP 165
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BLAST of transcription antitermination protein vs. nr
Match: gi|1222155154|ref|WP_090210477.1| (transcription termination/antitermination protein NusG [Loktanella litorea] >gi|1097295373|emb|SFS22122.1| transcription antitermination protein nusG [Loktanella litorea])

HSP 1 Score: 295.049 bits (754), Expect = 2.391e-98
Identity = 142/165 (86.06%), Postives = 154/165 (93.33%), Query Frame = 0 
Query:    1 MAKRWYSVSVLSNFEKKIAETIRQKAEEQGLSEQIEEVLVPTEEVIEVRRNKKVTAERRFMPGYVLVRMDMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVEEGQDAPRTLIHFEIGEKVKVSDGPFEDFDGMVEEVDEENSRLKVPA---GKANP 162
            MAKRWYSVSVLSNFEKKIAE IRQKA +QGL +QI+EVLVPTEEVIE+RRNKKVTAERRFMPGYVLV M+MSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRV+EG++APRTLI+FEIGEKVKV+DGPFEDFDG+VEEVDEEN RLKV     G+A P
Sbjct:    1 MAKRWYSVSVLSNFEKKIAEAIRQKAADQGLDDQIDEVLVPTEEVIEIRRNKKVTAERRFMPGYVLVHMEMSDEGYHLINSINRVTGFLGPQGRPMPMRDAEVQAILGRVQEGEEAPRTLINFEIGEKVKVNDGPFEDFDGLVEEVDEENQRLKVTVSIFGRATP 165
The following BLAST results are available for this feature:
BLAST of transcription antitermination protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000023998.159e-2136.92supercontig:LSalAtl2s:LSalAtl2s145:1549404:1550032... [more]
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BLAST of transcription antitermination protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
gi|118597289|sp|Q160X3.1|RL11_ROSDO3.938e-7379.55RecName: Full=50S ribosomal protein L11[more]
gi|81676082|sp|Q5LMP9.1|RL11_RUEPO2.888e-7076.52RecName: Full=50S ribosomal protein L11[more]
gi|189040957|sp|A8LLJ9.1|RL11_DINSH5.318e-7075.76RecName: Full=50S ribosomal protein L11[more]
gi|118597296|sp|Q1GK54.1|RL11_RUEST2.669e-6975.76RecName: Full=50S ribosomal protein L11[more]
gi|118597249|sp|Q28UY2.1|RL11_JANSC7.009e-6570.71RecName: Full=50S ribosomal protein L11[more]
gi|166230907|sp|A1B011.1|RL11_PARDP4.385e-6370.71RecName: Full=50S ribosomal protein L11[more]
gi|38605326|sp|Q8G065.1|RL11_BRUSU5.516e-6370.23RecName: Full=50S ribosomal protein L11 >gi|386054... [more]
gi|166230108|sp|A5VR19.1|RL11_BRUO29.608e-6369.47RecName: Full=50S ribosomal protein L11[more]
gi|38605419|sp|Q92QI1.1|RL11_RHIME2.731e-6270.23RecName: Full=50S ribosomal protein L11[more]
gi|254798456|sp|C3MAW7.1|RL11_RHISN3.079e-6270.23RecName: Full=50S ribosomal protein L11[more]

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BLAST of transcription antitermination protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1282010453|ref|WP_100369328.1|1.628e-10289.70transcription termination/antitermination protein ... [more]
gi|1221914164|ref|WP_089997352.1|4.870e-10290.30transcription termination/antitermination protein ... [more]
gi|495508363|ref|WP_008233009.1|6.604e-10288.48transcription termination/antitermination protein ... [more]
gi|942094343|ref|WP_055296201.1|8.682e-10289.09MULTISPECIES: transcription termination/antitermin... [more]
gi|800971749|ref|WP_045998408.1|1.879e-10084.88transcription termination/antitermination protein ... [more]
gi|1120027484|ref|WP_072901850.1|9.750e-9987.27transcription termination/antitermination protein ... [more]
gi|1361161455|ref|WP_106358368.1|1.019e-9886.67transcription termination/antitermination protein ... [more]
gi|1119980828|ref|WP_072857353.1|1.432e-9886.06transcription termination/antitermination protein ... [more]
gi|494388894|ref|WP_007206590.1|1.722e-9886.67transcription termination/antitermination protein ... [more]
gi|1222155154|ref|WP_090210477.1|2.391e-9886.06transcription termination/antitermination protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold358_size197577supercontigscaffold358_size197577:30217..31305 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteP:regulation of DNA-dependent transcription
Note elongation
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold358_size197577-processed-gene-0.8-mRNA-1snap_masked-scaffold358_size197577-processed-gene-0.8-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold358_size197577:30217..31305+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold358_size197577-processed-gene-0.8 ID=snap_masked-scaffold358_size197577-processed-gene-0.8|Name=transcription antitermination protein|organism=Tigriopus kingsejongensis|type=gene|length=1089bp|location=Sequence derived from alignment at scaffold358_size197577:30217..31305+ (Tigriopus kingsejongensis)
ATGGCCAAACGTTGGTATTCTGTAAGCGTCCTCTCGAACTTTGAGAAAAA
GATCGCAGAGACCATTCGCCAAAAAGCGGAAGAGCAAGGTCTGTCGGAAC
AGATCGAAGAAGTGTTGGTGCCCACCGAAGAAGTGATCGAGGTGCGCCGG
AATAAAAAAGTAACAGCAGAACGCCGGTTTATGCCCGGTTATGTGCTGGT
GCGGATGGATATGTCTGACGAAGGCTACCATTTGATCAATTCCATCAACC
GCGTCACGGGTTTCTTGGGCCCGCAAGGTCGTCCGATGCCGATGCGTGAT
GCCGAAGTGCAGGCGATTCTAGGCCGTGTCGAAGAAGGCCAGGATGCACC
GCGCACGCTTATTCACTTTGAAATTGGTGAAAAAGTCAAAGTCTCTGACG
GTCCGTTTGAAGATTTCGACGGCATGGTTGAAGAAGTTGATGAAGAAAAC
AGCCGCCTGAAGGTGACTGTTTCTATCTTTGGCCGGGCGACACCGGTTGA
GCTCGAATTCACGCAGGTTATGAAACAATAATCTGCGCGTTCAGACGTGG
GAGTCGCAGTTTTCATGCTAATCCTGAAAAGCTGCAACGAACCACGGCAA
ACCGCCCCTATTGGGGCATTGTAGGGCAGGCAGCCGCTTGTCGCTGAAAA
AAGGAGAGGCCACATGGCCAAGAAAGTCATCGGGACGCTGAAATTGCAGG
TCCCAGCTGGTAAAGCAAACCCATCCCCCCCCGTAGGCCCTGCATTGGGC
CAGCGCGGCATCAACATCATGGAATTCTGTAAAGCGTTCAACGCGGCGAC
ACAGGAAATGGAAACCGGCGCACCTTGCCCGACTGTCATCACCTATTACG
CCGACAAATCCTTCTCGATGGAAATCAAGACGCCACCTGCGTCCCACTTC
ATCAAGAAGGCCGCGAAACTGACAGCCGGTTCTAAATTGCCAGGCCGTTC
GGTTGCAGGGTCGATCACTGGTAAGCAGGTGCGTGAAATCGCTGAAGCCA
AGATGAAAGATTTGAACGCGACTTCTATCGAAGGCGCAATGCTGATCATC
GCGGGCTCTGCTCGCTCTATGGGCATCGAGGTGAAGTAA
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Synonyms
The feature 'transcription antitermination protein' has the following synonyms
Synonym
Tk00157
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