swib domain-containing protein, snap_masked-scaffold430_size173499-processed-gene-0.18 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of swib domain-containing protein vs. L. salmonis genes
Match: EMLSAG00000002923 (supercontig:LSalAtl2s:LSalAtl2s1687:28882:29139:-1 gene:EMLSAG00000002923 transcript:EMLSAT00000002923 description:"augustus_masked-LSalAtl2s1687-processed-gene-0.0") HSP 1 Score: 117.857 bits (294), Expect = 6.775e-36 Identity = 55/61 (90.16%), Postives = 58/61 (95.08%), Query Frame = 0 Query: 73 MPKGAGLTKPMKLSPELAEVVGKKEASRAECIKQLWAYIKKHNLQDPENKQYFTPDKKMAK 133 MPKG+GLTK MKLS ELA+VVGKKEASRAECIK LWAY+KKHNLQDPENKQYFTPDKKMAK Sbjct: 1 MPKGSGLTKTMKLSNELADVVGKKEASRAECIKLLWAYLKKHNLQDPENKQYFTPDKKMAK 61
BLAST of swib domain-containing protein vs. L. salmonis genes
Match: EMLSAG00000001079 (supercontig:LSalAtl2s:LSalAtl2s117:677548:677954:-1 gene:EMLSAG00000001079 transcript:EMLSAT00000001079 description:"maker-LSalAtl2s117-augustus-gene-7.31") HSP 1 Score: 116.316 bits (290), Expect = 2.177e-35 Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 0 Query: 73 MPKGAGLTKPMKLSPELAEVVGKKEASRAECIKQLWAYIKKHNLQDPENKQYFTPDKKMAK 133 MPKG+GLTK MKLS ELA VVGKKEASRAECIK LWAY+KKHNLQDPENKQYFTPDKKMAK Sbjct: 1 MPKGSGLTKTMKLSNELAXVVGKKEASRAECIKLLWAYLKKHNLQDPENKQYFTPDKKMAK 61
BLAST of swib domain-containing protein vs. L. salmonis genes
Match: EMLSAG00000008637 (supercontig:LSalAtl2s:LSalAtl2s532:229776:238340:1 gene:EMLSAG00000008637 transcript:EMLSAT00000008637 description:"snap_masked-LSalAtl2s532-processed-gene-2.6") HSP 1 Score: 72.0182 bits (175), Expect = 3.331e-18 Identity = 39/60 (65.00%), Postives = 43/60 (71.67%), Query Frame = 0 Query: 73 MPKGAGLTKPMKLSPELAEVVGKKEASRAECIKQLWAYIKKHNLQDPENKQYFTPDKKMA 132 MPK GLT+ MKLS E A VVGKKEA R + IK + +KKHNLQDPE KQYF P KKM Sbjct: 1 MPKEYGLTQTMKLSNEFANVVGKKEAFRPKFIKFV---LKKHNLQDPEKKQYFNPVKKMV 57
BLAST of swib domain-containing protein vs. L. salmonis genes
Match: EMLSAG00000009844 (supercontig:LSalAtl2s:LSalAtl2s63:310844:311707:-1 gene:EMLSAG00000009844 transcript:EMLSAT00000009844 description:"maker-LSalAtl2s63-augustus-gene-3.13") HSP 1 Score: 67.781 bits (164), Expect = 6.847e-15 Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 0 Query: 78 GLTKPMKLSPELAEVVGKKEASRAECIKQLWAYIKKHNLQDPENKQYFTPDKKMAKT 134 G TKP+ LS +LA +VGK A R E +KQ+WAYIK++ LQDP+NKQ+ D+K+ K Sbjct: 167 GFTKPLNLSADLAIIVGKDMAPRHEVVKQVWAYIKENKLQDPKNKQFAICDEKLKKV 223
BLAST of swib domain-containing protein vs. L. salmonis genes
Match: EMLSAG00000008620 (supercontig:LSalAtl2s:LSalAtl2s530:741339:741623:1 gene:EMLSAG00000008620 transcript:EMLSAT00000008620 description:"augustus_masked-LSalAtl2s530-processed-gene-7.4") HSP 1 Score: 57.7658 bits (138), Expect = 2.735e-12 Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 0 Query: 72 KMPKGAGLTKPMKLSPELAEVVGKKEASRAECIKQLWAYIKKHNLQDPENKQYFTPDKKMAKT 134 K+P+GA + + E+ E K+ SRA+CI LW Y+K H+LQ+ NKQ+FT DKKMAK Sbjct: 17 KLPRGA--SSGLXXXHEIEE----KKDSRAKCIYLLWVYLKNHHLQELTNKQFFTIDKKMAKI 73
BLAST of swib domain-containing protein vs. SwissProt
Match: gi|74626867|sp|O74503.1|UAF30_SCHPO (RecName: Full=Upstream activation factor subunit spp27; AltName: Full=Upstream activation factor 27 KDa subunit; Short=p27; AltName: Full=Upstream activation factor 30 KDa subunit; Short=p30; AltName: Full=Upstream activation factor subunit uaf30) HSP 1 Score: 64.3142 bits (155), Expect = 2.928e-12 Identity = 37/116 (31.90%), Postives = 63/116 (54.31%), Query Frame = 0 Query: 16 QSLDQQSAPRLSRLSRIPDNYAKKCVGPSRHLSLFRHFRSTLSSLSTFPNPSHTPLKMPKGAGLTKPMKLSPELAEVVGKKEASRAECIKQLWAYIKKHNLQDPENKQYFTPDKKM 131 +SL++Q+ R ++ R +N ++ P++ + +P++ PL KPMKLSP+LAE +G ++ SR + +K+LW YIK H+LQDP +K+ D K+ Sbjct: 62 ESLEKQAPARKTKGKRATENGTEEGKKPAKRTRKRKEDGEEGGKRKRNQDPANNPL--------NKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKL 169
BLAST of swib domain-containing protein vs. SwissProt
Match: gi|74645010|sp|Q08747.1|UAF30_YEAST (RecName: Full=Upstream activation factor subunit UAF30; AltName: Full=Upstream activation factor 30 KDa subunit; Short=p30) HSP 1 Score: 57.3806 bits (137), Expect = 1.275e-9 Identity = 24/52 (46.15%), Postives = 37/52 (71.15%), Query Frame = 0 Query: 80 TKPMKLSPELAEVVGKKEASRAECIKQLWAYIKKHNLQDPENKQYFTPDKKM 131 T+ + LS LA ++G+ E +R E +++LWAYIK HNLQ+P NK+ D+K+ Sbjct: 121 TRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKL 172
BLAST of swib domain-containing protein vs. nr
Match: gi|239938969|gb|ACS36127.1| (SWIB domain-containing protein, partial [Tigriopus japonicus]) HSP 1 Score: 122.479 bits (306), Expect = 7.159e-34 Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 0 Query: 72 KMPKGAGLTKPMKLSPELAEVVGKKEASRAECIKQLWAYIKKHNLQDPENKQYFTPDKKMAKT 134 KM KG+GLTKPMKLSPELAEVVGKKEASR+ECIKQLWAYIKKHNLQDPENKQ+F PDKKMAK Sbjct: 4 KMAKGSGLTKPMKLSPELAEVVGKKEASRSECIKQLWAYIKKHNLQDPENKQFFKPDKKMAKV 66
BLAST of swib domain-containing protein vs. nr
Match: gi|1325278550|ref|XP_023323923.1| (upstream activation factor subunit spp27-like [Eurytemora affinis]) HSP 1 Score: 85.5001 bits (210), Expect = 2.718e-19 Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 0 Query: 73 MPKGAGLTKPMKLSPELAEVVGKKEA---SRAECIKQLWAYIKKHNLQDPENKQYFTPDKKM 131 MPKG+GLTKP+ LS +LA+++G K+ SR E +K+LWAYIK+ LQDPENKQ+FTPDKKM Sbjct: 1 MPKGSGLTKPLSLSDDLADLLGAKKGEKLSRPEVVKKLWAYIKEKKLQDPENKQFFTPDKKM 62
BLAST of swib domain-containing protein vs. nr
Match: gi|1148368803|gb|AQS22644.1| (SWIB domain-containing protein [Pseudodiaptomus poplesia]) HSP 1 Score: 84.7297 bits (208), Expect = 5.981e-19 Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 0 Query: 75 KGAGLTKPMKLSPELAEVVGKKEA---SRAECIKQLWAYIKKHNLQDPENKQYFTPDKKM 131 KG+G+T P+ LS ELA++VG K+ SR E IK+LWAY+K+HNLQDPEN+QYF PDKKM Sbjct: 5 KGSGITAPLGLSDELADIVGAKKGEKLSRPEVIKRLWAYLKEHNLQDPENRQYFKPDKKM 64
BLAST of swib domain-containing protein vs. nr
Match: gi|1148368837|gb|AQS22661.1| (swib domain-containing protein [Pseudodiaptomus poplesia]) HSP 1 Score: 84.3445 bits (207), Expect = 1.148e-18 Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 0 Query: 75 KGAGLTKPMKLSPELAEVVGKKEA---SRAECIKQLWAYIKKHNLQDPENKQYFTPDKKM 131 KG+G+T P+ LS ELA++VG K+ SR E IK+LWAY+K+HNLQDPENKQYF PDKKM Sbjct: 5 KGSGITAPLCLSDELADIVGAKKGEKLSRPEVIKRLWAYLKEHNLQDPENKQYFKPDKKM 64
BLAST of swib domain-containing protein vs. nr
Match: gi|1148368877|gb|AQS22681.1| (SWIB domain-containing protein [Pseudodiaptomus poplesia]) HSP 1 Score: 83.1889 bits (204), Expect = 3.088e-18 Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 0 Query: 75 KGAGLTKPMKLSPELAEVVGKKEA---SRAECIKQLWAYIKKHNLQDPENKQYFTPDKKM 131 KG+G+T P+ LS ELA++VG K+ SR E IK+LWAY+K+H LQDPENKQYF PDKKM Sbjct: 5 KGSGITAPLGLSDELADIVGAKKGEKLSRPEVIKRLWAYLKEHKLQDPENKQYFKPDKKM 64
BLAST of swib domain-containing protein vs. nr
Match: gi|1325264639|ref|XP_023335659.1| (upstream activation factor subunit spp27-like [Eurytemora affinis]) HSP 1 Score: 78.1814 bits (191), Expect = 3.422e-16 Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 0 Query: 78 GLTKPMKLSPELAEVVGKKEA---SRAECIKQLWAYIKKHNLQDPENKQYFTPDKKMA 132 GLTKPM LSPELA +VG K+ +R+E +K+LWAY+K+ +L+DPENKQ+FTPD MA Sbjct: 27 GLTKPMTLSPELAAIVGAKKDEKLARSEIVKRLWAYLKEKDLKDPENKQFFTPDSLMA 84
BLAST of swib domain-containing protein vs. nr
Match: gi|1325255011|ref|XP_023348406.1| (protein TRI1-like [Eurytemora affinis]) HSP 1 Score: 77.411 bits (189), Expect = 6.451e-16 Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 0 Query: 78 GLTKPMKLSPELAEVVGKKEA---SRAECIKQLWAYIKKHNLQDPENKQYFTPDKKM 131 GLTKPM LS ELA +VG K+ +R+E IK+LWAY+K+ LQDPENKQ+FTPDK M Sbjct: 19 GLTKPMALSAELATIVGAKKDEKLARSEIIKRLWAYLKEKKLQDPENKQFFTPDKTM 75
BLAST of swib domain-containing protein vs. nr
Match: gi|1325335084|ref|XP_023349362.1| (protein TRI1-like [Eurytemora affinis] >gi|1325335086|ref|XP_023349363.1| protein TRI1-like [Eurytemora affinis]) HSP 1 Score: 73.559 bits (179), Expect = 2.332e-14 Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 0 Query: 75 KGAGLTKPMKLSPELAEVVG---KKEASRAECIKQLWAYIKKHNLQDPENKQYFTPDKKM 131 K +GLTKPMKLS EL+ +VG ++ +R+E +K+LWAY+K+ LQDPENKQ+FTPD M Sbjct: 22 KPSGLTKPMKLSAELSAIVGAGKDEKLARSEVVKRLWAYLKEKKLQDPENKQFFTPDALM 81
BLAST of swib domain-containing protein vs. nr
Match: gi|768712202|ref|WP_044881606.1| (hypothetical protein [Neochlamydia sp. EPS4] >gi|742766281|gb|KIC75401.1| hypothetical protein DB42_AC00070 [Neochlamydia sp. EPS4]) HSP 1 Score: 72.0182 bits (175), Expect = 6.369e-14 Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 0 Query: 75 KGAGLTKPMKLSPELAEVVGKKEASRAECIKQLWAYIKKHNLQDPENKQYFTPDKKMAKT 134 K + KP+++SPELAE+VG+ R E K++W YIKKHNLQD +NK+ PD K+AK Sbjct: 5 KNSAFMKPVQVSPELAEIVGQGSMPRTEITKKVWEYIKKHNLQDAQNKRNINPDAKLAKV 64
BLAST of swib domain-containing protein vs. nr
Match: gi|746341252|ref|WP_039386374.1| (MULTISPECIES: hypothetical protein [Neochlamydia]) HSP 1 Score: 72.0182 bits (175), Expect = 6.723e-14 Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 0 Query: 75 KGAGLTKPMKLSPELAEVVGKKEASRAECIKQLWAYIKKHNLQDPENKQYFTPDKKMAKT 134 K + KP+++SPELAE+VG+ R E K++W YIKKHNLQD +NK+ PD K+AK Sbjct: 5 KNSAFMKPVQVSPELAEIVGQGSMPRTEITKKVWEYIKKHNLQDAQNKRNINPDAKLAKV 64 The following BLAST results are available for this feature:
BLAST of swib domain-containing protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 5
BLAST of swib domain-containing protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 2
BLAST of swib domain-containing protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold430_size173499:14767..17164- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold430_size173499-processed-gene-0.18 ID=snap_masked-scaffold430_size173499-processed-gene-0.18|Name=swib domain-containing protein|organism=Tigriopus kingsejongensis|type=gene|length=2398bp|location=Sequence derived from alignment at scaffold430_size173499:14767..17164- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'swib domain-containing protein' has the following synonyms
Add to Basket
|