28s ribosomal protein mitochondrial precursor, snap_masked-scaffold450_size166944-processed-gene-0.11 (gene) Tigriopus kingsejongensis

Overview
Name28s ribosomal protein mitochondrial precursor
Unique Namesnap_masked-scaffold450_size166944-processed-gene-0.11
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of 28s ribosomal protein mitochondrial precursor vs. L. salmonis genes
Match: EMLSAG00000001239 (supercontig:LSalAtl2s:LSalAtl2s1202:102886:103505:-1 gene:EMLSAG00000001239 transcript:EMLSAT00000001239 description:"augustus_masked-LSalAtl2s1202-processed-gene-0.5")

HSP 1 Score: 191.045 bits (484), Expect = 4.308e-63
Identity = 100/168 (59.52%), Postives = 119/168 (70.83%), Query Frame = 0 
Query:   10 SRALRPWCGRPLGLRGLHLSPPLGKTVAGRYKVTVNRTKPLTYEMSFKPEAIMHQKGFNSFNTAQLENTFLKKEEIGQDLPTKMLLEDKFIRQFMHGTWPEALESMVIIKRQHNLIRLAAIISRNRIPPAKVYFLIGYTEELLSFWLKCPVRLELQSGEREDVIYKYI 177
            S ALR   G    LR +H S  L K  AGRYK T  RT  LTYEMS  PE I H+K +NS NTAQLE TFL++E +GQDLP KM +ED FIR+FM+GTWP+  +S +IIKR HNLIR+A  I+   IP  K+YFLIGYTEE+LS WLKCPV+LELQS  +   I K+I
Sbjct:    2 SSALRK--GFSPALRRIHTSVCLRKEKAGRYKATPRRTFGLTYEMSLLPEEIAHKKSWNSLNTAQLEGTFLERESMGQDLPHKMAVEDMFIRKFMNGTWPDTFQSEIIIKRTHNLIRIAG-ITNYFIPAKKMYFLIGYTEEMLSLWLKCPVKLELQSASQNATIIKHI 166
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BLAST of 28s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|74868306|sp|Q9VCC3.1|RT24_DROME (RecName: Full=28S ribosomal protein S24, mitochondrial; Short=MRP-S24; Short=S24mt; Flags: Precursor)

HSP 1 Score: 154.066 bits (388), Expect = 4.902e-47
Identity = 77/158 (48.73%), Postives = 108/158 (68.35%), Query Frame = 0 
Query:   21 LGLRGLHLSPPLGKTVAGRYKVTVNRTKPLTYEMSFKPEAIMHQKGFNSFNTAQLENTFLKKEEIGQDLPTKMLLEDKFIRQFMHGTWPEALESMVIIKRQHNLIRLAAIISRNRIPPAKVYFLIGYTEELLSFWLKCPVRLELQS-GEREDVIYKYI 177
            L   G H S    +  +GRY++T  R +PLTYEM+  P  I H+K +NS+NT+ +++            P++  +ED FIR+F+ GTW   + S VIIKRQHN IR+AA+I R  I P K+YFLIGYTEELLS+W++CPV LELQ+ G+++DV++KYI
Sbjct:   18 LSRSGFHTSSVCCRVQSGRYRITTKRNRPLTYEMANPPHFIGHRKSWNSWNTSTMKDALR---------PSQTAIEDVFIRKFVTGTWHALVCSEVIIKRQHNTIRIAALI-RQAITPRKMYFLIGYTEELLSYWMQCPVTLELQTVGDKKDVVFKYI 165
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BLAST of 28s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|74731578|sp|Q96EL2.1|RT24_HUMAN (RecName: Full=28S ribosomal protein S24, mitochondrial; Short=MRP-S24; Short=S24mt; AltName: Full=Mitochondrial small ribosomal subunit protein uS3m; AltName: Full=bMRP-47; Short=bMRP47; Flags: Precursor)

HSP 1 Score: 118.242 bits (295), Expect = 5.557e-33
Identity = 67/170 (39.41%), Postives = 99/170 (58.24%), Query Frame = 0 
Query:    8 GWSRALRPWCGRPLGLRGLHLSPPLGKTVAGRYKVTVNRTKPLTYEMSFKPEAIMHQKGFNSFNTAQLENTFLKKEEIGQDLPTKMLLEDKFIRQFMHGTWPEALESMVIIKRQHNLIRLAAIISRNRIPPAKVYFLIGYTEELLSFWLKCPVRLELQSGEREDVIYKYI 177
             WSR L      P   R LH SP   K  A R +V+    KP+TYE +  P  I H+KG+ S +T  L+         G+D   +  +ED F+R+FM GT+P  L   +++KR+ N + + A++ R ++ P K YFL+GY+E LLS++ KCPVRL LQ+   + V+YKY+
Sbjct:   16 SWSREL------PCAWRALHTSPVCAKNRAARVRVSKG-DKPVTYEEAHAPHYIAHRKGWLSLHTGNLD---------GEDHAAERTVEDVFLRKFMWGTFPGCLADQLVLKRRGNQLEICAVVLR-QLSPHKYYFLVGYSETLLSYFYKCPVRLHLQTVPSK-VVYKYL 167
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BLAST of 28s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|81880396|sp|Q9CQV5.1|RT24_MOUSE (RecName: Full=28S ribosomal protein S24, mitochondrial; Short=MRP-S24; Short=S24mt; Flags: Precursor)

HSP 1 Score: 113.235 bits (282), Expect = 4.546e-31
Identity = 68/178 (38.20%), Postives = 99/178 (55.62%), Query Frame = 0 
Query:    8 GWSRALRPW------CGR--PLGLRGLHLSPPLGKTVAGRYKVTVNRTKPLTYEMSFKPEAIMHQKGFNSFNTAQLENTFLKKEEIGQDLPTKMLLEDKFIRQFMHGTWPEALESMVIIKRQHNLIRLAAIISRNRIPPAKVYFLIGYTEELLSFWLKCPVRLELQSGEREDVIYKYI 177
             WS ++R        C R  P   R LH S    K  A R +V     KP++YE +  P  I H+KG+ S +T  L+         G+D   +  LED F+R+FM GT+P  L   +++KR+ N + + A++ R ++P  K YFL+GY+E LLS + KCPVRL LQ+   + V+YKYI
Sbjct:    2 AWSASVRGLGQRVLACSRELPGAWRTLHTSAVCAKNRAARVRVAKG-NKPVSYEEAHAPHYIAHRKGWLSLHTGNLD---------GEDHAAERTLEDVFLRKFMMGTFPGCLADQIVLKRRANQVDICALVLR-QLPAHKFYFLVGYSETLLSHFYKCPVRLHLQTVPSK-VVYKYI 167
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BLAST of 28s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|122136344|sp|Q2M2T7.1|RT24_BOVIN (RecName: Full=28S ribosomal protein S24, mitochondrial; Short=MRP-S24; Short=S24mt; Flags: Precursor)

HSP 1 Score: 111.694 bits (278), Expect = 2.228e-30
Identity = 68/169 (40.24%), Postives = 96/169 (56.80%), Query Frame = 0 
Query:    9 WSRALRPWCGRPLGLRGLHLSPPLGKTVAGRYKVTVNRTKPLTYEMSFKPEAIMHQKGFNSFNTAQLENTFLKKEEIGQDLPTKMLLEDKFIRQFMHGTWPEALESMVIIKRQHNLIRLAAIISRNRIPPAKVYFLIGYTEELLSFWLKCPVRLELQSGEREDVIYKYI 177
            WSR L      P   R LH S    K  A R +V     KP+TYE +  P  I H+KG+ S +T  L+         G+D   +  +ED F+R+FM GT+P  L   +I+KR+ N + + A++ R ++P  K YFL+GY+E LLS + KCPVRL LQ+   + V+YKYI
Sbjct:   17 WSRDL------PCIWRALHTSAVCFKNRAARVRVG-KGNKPVTYEEAHAPHYIAHRKGWLSLHTGNLD---------GEDHAAERTVEDVFLRKFMLGTFPGCLADQLILKRRANQVEICALVLR-QLPAHKFYFLVGYSETLLSHFYKCPVRLHLQTVPSK-VVYKYI 167
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BLAST of 28s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|82185415|sp|Q6NTS3.1|RT24A_XENLA (RecName: Full=28S ribosomal protein S24-A, mitochondrial; Short=MRP-S24-A; Short=S24mt-A; Flags: Precursor)

HSP 1 Score: 105.145 bits (261), Expect = 7.370e-28
Identity = 59/130 (45.38%), Postives = 83/130 (63.85%), Query Frame = 0 
Query:   48 KPLTYEMSFKPEAIMHQKGFNSFNTAQLENTFLKKEEIGQDLPTKMLLEDKFIRQFMHGTWPEALESMVIIKRQHNLIRLAAIISRNRIPPAKVYFLIGYTEELLSFWLKCPVRLELQSGEREDVIYKYI 177
            KP+TYE +  P  I H+KG+ S +T  L+         G+    +  +ED FIR+F+ GT+   L + ++IKR+ NL+ + AI  R ++P  K YFLIGYTE LLSF  KCPV+LE+Q+ E E VIYKY+
Sbjct:   52 KPVTYEAAHPPHYIAHRKGWLSQHTGNLD---------GEGGAAERTIEDVFIRRFIFGTFHGCLANEIVIKRRANLLIICAIFIR-KMPTQKFYFLIGYTETLLSFLYKCPVKLEVQTVE-EKVIYKYL 170
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BLAST of 28s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|123899841|sp|Q3B8K3.1|RT24B_XENLA (RecName: Full=28S ribosomal protein S24-B, mitochondrial; Short=MRP-S24-B; Short=S24mt-B; Flags: Precursor)

HSP 1 Score: 105.145 bits (261), Expect = 7.530e-28
Identity = 59/130 (45.38%), Postives = 83/130 (63.85%), Query Frame = 0 
Query:   48 KPLTYEMSFKPEAIMHQKGFNSFNTAQLENTFLKKEEIGQDLPTKMLLEDKFIRQFMHGTWPEALESMVIIKRQHNLIRLAAIISRNRIPPAKVYFLIGYTEELLSFWLKCPVRLELQSGEREDVIYKYI 177
            KP+TYE +  P  I H+KG+ S +T  L+         G+    +  +ED FIR+F+ GT+   L + ++IKR+ NL+ + AI  R ++P  K YFLIGYTE LLSF  KCPV+LE+Q+ E E VIYKY+
Sbjct:   52 KPVTYEAAHPPHYIAHRKGWLSQHTGNLD---------GEGGAAERTIEDVFIRRFIFGTFHGCLANEIVIKRRANLLIICAIFIR-KMPTQKFYFLIGYTETLLSFLYKCPVKLEVQTVE-EKVIYKYL 170
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BLAST of 28s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|82192621|sp|Q502C1.1|RT24_DANRE (RecName: Full=28S ribosomal protein S24, mitochondrial; Short=MRP-S24; Short=S24mt; Flags: Precursor)

HSP 1 Score: 102.064 bits (253), Expect = 1.089e-26
Identity = 59/155 (38.06%), Postives = 92/155 (59.35%), Query Frame = 0 
Query:   23 LRGLHLSPPLGKTVAGRYKVTVNRTKPLTYEMSFKPEAIMHQKGFNSFNTAQLENTFLKKEEIGQDLPTKMLLEDKFIRQFMHGTWPEALESMVIIKRQHNLIRLAAIISRNRIPPAKVYFLIGYTEELLSFWLKCPVRLELQSGEREDVIYKYI 177
             R +H +    K  A R +V     +PLTYE +  P  I H+KG+ S +T  L           +    + +LED FIR+F+ GT+   L   ++IKR+ N++ + A++ + ++ P+K YFL+GYTEELLS + KCPV++ELQ  + E V+YKY+
Sbjct:   21 FRSIHSTAACLKNRAARIRVG-KGDRPLTYEQAHHPHHISHRKGWLSQHTGNLH---------AEGGAAERVLEDVFIRRFIFGTFHSCLADELVIKRRGNVLIICAVMIQ-KLLPSKFYFLLGYTEELLSHFYKCPVKMELQLVD-EKVVYKYL 163
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BLAST of 28s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|75006904|sp|Q688C0.1|RT24_CAEEL (RecName: Full=28S ribosomal protein S24, mitochondrial; Short=MRP-S24; Short=S24mt; Flags: Precursor)

HSP 1 Score: 81.6481 bits (200), Expect = 7.307e-19
Identity = 56/163 (34.36%), Postives = 93/163 (57.06%), Query Frame = 0 
Query:   20 PLGLRGLHLSPPLGKTVAGRYKVTVNRTKPLTYEMSFKPEAIMHQKGFNSFNTAQLENTFLKKEEIGQDLPTKMLLEDKFIRQFMHGTWPEAL---ESMVIIKRQHNLIRLAAIISRNR-IPPAKVYFLIGYTEELLSFWLKCPVRLELQSGE-REDVIYKYI 177
             L  R +  +  L K  AG+ K T NRT+ LTYEM+ KP  I  +K + ++++  LE       E  Q  P  ++ +D+ +R+F+ G +P+ L    + ++IKR+ N++ +A  +  +R +   ++Y++ G+ EE LS  LK PV+LE+   E  EDV Y YI
Sbjct:   10 ALSSRQISTTSMLLKNRAGKTKSTSNRTQLLTYEMAQKPHHIGVRKSWLTWHSQNLE-------EFRQSQPL-VVAQDEVVRRFIRGFFPQNLVVSGNEIVIKRRGNVLIVAGFLQYSRRLDIRRIYWMFGFAEEFLSILLKQPVKLEMAFVESEEDVAYNYI 164
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BLAST of 28s ribosomal protein mitochondrial precursor vs. SwissProt
Match: gi|74791681|sp|Q61T16.1|RT24_CAEBR (RecName: Full=28S ribosomal protein S24, mitochondrial; Short=MRP-S24; Short=S24mt; Flags: Precursor)

HSP 1 Score: 80.4925 bits (197), Expect = 2.802e-18
Identity = 54/159 (33.96%), Postives = 92/159 (57.86%), Query Frame = 0 
Query:   24 RGLHLSPPLGKTVAGRYKVTVNRTKPLTYEMSFKPEAIMHQKGFNSFNTAQLENTFLKKEEIGQDLPTKMLLEDKFIRQFMHGTWPEAL---ESMVIIKRQHNLIRLAAIISRNR-IPPAKVYFLIGYTEELLSFWLKCPVRLELQSGEREDVI-YKYI 177
            R +  +  L K  AG+ K T NRT+ LTYEM+ KP  I  +K + ++++  LE       E  Q  P  ++ +D+ +R+F+ G +P+ L    + ++IKR+ N++ +A  +  +R +   ++Y++ G+ EE LS  LK PV+LEL   E E+ + Y YI
Sbjct:   16 RRISTTSTLLKNRAGKTKSTSNRTQLLTYEMAQKPHHIGVRKSWLTWHSQNLE-------EFRQSQPL-VVAQDEVVRRFIRGFFPQNLVVSGNEIVIKRRGNVLIVAGFLQYSRRLDIRRIYWMFGFAEEFLSILLKQPVKLELSFVESEETVAYNYI 166
[Close]
BLAST of 28s ribosomal protein mitochondrial precursor vs. nr
Match: gi|225710880|gb|ACO11286.1| (28S ribosomal protein S24, mitochondrial precursor [Caligus rogercresseyi])

HSP 1 Score: 193.741 bits (491), Expect = 3.569e-60
Identity = 95/156 (60.90%), Postives = 116/156 (74.36%), Query Frame = 0 
Query:   22 GLRGLHLSPPLGKTVAGRYKVTVNRTKPLTYEMSFKPEAIMHQKGFNSFNTAQLENTFLKKEEIGQDLPTKMLLEDKFIRQFMHGTWPEALESMVIIKRQHNLIRLAAIISRNRIPPAKVYFLIGYTEELLSFWLKCPVRLELQSGEREDVIYKYI 177
            G+R  H S  L K  +G YK T  RT  LTYEMSF P+ I H+K +NS+NTAQLE TF+++E IGQDLP KM++ED FIR+FM+GTWP+   S VIIKR HNLIR+A I +R  IP  K+YFLIGYTEE+LS WLKCPV+LELQ+ +    I KYI
Sbjct:    8 GVRRFHASARLCKEKSGHYKSTPRRTFGLTYEMSFLPQEIAHKKSWNSYNTAQLEGTFMEREAIGQDLPHKMIVEDMFIRKFMNGTWPDTFMSEVIIKRTHNLIRIAGIANRF-IPAKKMYFLIGYTEEMLSLWLKCPVKLELQTADANATIVKYI 162
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BLAST of 28s ribosomal protein mitochondrial precursor vs. nr
Match: gi|225712556|gb|ACO12124.1| (28S ribosomal protein S24, mitochondrial precursor [Lepeophtheirus salmonis] >gi|225712814|gb|ACO12253.1| 28S ribosomal protein S24, mitochondrial precursor [Lepeophtheirus salmonis] >gi|290563052|gb|ADD38920.1| 28S ribosomal protein S24, mitochondrial [Lepeophtheirus salmonis])

HSP 1 Score: 191.045 bits (484), Expect = 4.035e-59
Identity = 100/168 (59.52%), Postives = 119/168 (70.83%), Query Frame = 0 
Query:   10 SRALRPWCGRPLGLRGLHLSPPLGKTVAGRYKVTVNRTKPLTYEMSFKPEAIMHQKGFNSFNTAQLENTFLKKEEIGQDLPTKMLLEDKFIRQFMHGTWPEALESMVIIKRQHNLIRLAAIISRNRIPPAKVYFLIGYTEELLSFWLKCPVRLELQSGEREDVIYKYI 177
            S ALR   G    LR +H S  L K  AGRYK T  RT  LTYEMS  PE I H+K +NS NTAQLE TFL++E +GQDLP KM +ED FIR+FM+GTWP+  +S +IIKR HNLIR+A  I+   IP  K+YFLIGYTEE+LS WLKCPV+LELQS  +   I K+I
Sbjct:    2 SSALRK--GFSPALRRIHTSVCLRKEKAGRYKATPRRTFGLTYEMSLLPEEIAHKKSWNSLNTAQLEGTFLERESMGQDLPHKMAVEDMFIRKFMNGTWPDTFQSEIIIKRTHNLIRIAG-ITNYFIPAKKMYFLIGYTEEMLSLWLKCPVKLELQSASQNATIIKHI 166
[Close]
BLAST of 28s ribosomal protein mitochondrial precursor vs. nr
Match: gi|290561411|gb|ADD38106.1| (28S ribosomal protein S24, mitochondrial [Lepeophtheirus salmonis])

HSP 1 Score: 190.66 bits (483), Expect = 5.188e-59
Identity = 100/168 (59.52%), Postives = 119/168 (70.83%), Query Frame = 0 
Query:   10 SRALRPWCGRPLGLRGLHLSPPLGKTVAGRYKVTVNRTKPLTYEMSFKPEAIMHQKGFNSFNTAQLENTFLKKEEIGQDLPTKMLLEDKFIRQFMHGTWPEALESMVIIKRQHNLIRLAAIISRNRIPPAKVYFLIGYTEELLSFWLKCPVRLELQSGEREDVIYKYI 177
            S ALR   G    LR +H S  L K  AGRYK T  RT  LTYEMS  PE I H+K +NS NTAQLE TFL++E +GQDLP KM +ED FIR+FM+GTWP+  +S +IIKR HNLIR+A  I+   IP  K+YFLIGYTEE+LS WLKCPV+LELQS  +   I K+I
Sbjct:    2 SSALRK--GFSPALRRIHTSVYLRKEKAGRYKATPRRTFGLTYEMSLLPEEIAHKKSWNSLNTAQLEGTFLERESMGQDLPHKMAVEDMFIRKFMNGTWPDTFQSEIIIKRTHNLIRIAG-ITNYFIPAKKMYFLIGYTEEMLSLWLKCPVKLELQSASQNATIIKHI 166
[Close]
BLAST of 28s ribosomal protein mitochondrial precursor vs. nr
Match: gi|225719578|gb|ACO15635.1| (28S ribosomal protein S24, mitochondrial precursor [Caligus clemensi])

HSP 1 Score: 188.734 bits (478), Expect = 4.134e-58
Identity = 93/160 (58.13%), Postives = 118/160 (73.75%), Query Frame = 0 
Query:   18 GRPLGLRGLHLSPPLGKTVAGRYKVTVNRTKPLTYEMSFKPEAIMHQKGFNSFNTAQLENTFLKKEEIGQDLPTKMLLEDKFIRQFMHGTWPEALESMVIIKRQHNLIRLAAIISRNRIPPAKVYFLIGYTEELLSFWLKCPVRLELQSGEREDVIYKYI 177
            G   G+R L  S  L K  +G YK T  RT  LTYEMS  P+ I ++K +NSFNTAQLE TFL++E IGQDLP KM++ED FIR+FM+GTWP+A ++ ++IKR HNLIR+A I +R  +   K+YFLIGYTEE+LS WLKCPV+LELQ+ E+   I KYI
Sbjct:   10 GSRYGIRHLSRSSVLSKEKSGHYKSTPRRTFGLTYEMSNLPKDIAYKKSWNSFNTAQLEGTFLEREAIGQDLPHKMVIEDMFIRKFMNGTWPDAFDTEILIKRTHNLIRIAGITNR-YLQARKMYFLIGYTEEMLSLWLKCPVKLELQTAEKNATIVKYI 168
[Close]
BLAST of 28s ribosomal protein mitochondrial precursor vs. nr
Match: gi|1325256652|ref|XP_023322231.1| (28S ribosomal protein S24, mitochondrial-like [Eurytemora affinis])

HSP 1 Score: 171.4 bits (433), Expect = 2.920e-51
Identity = 90/170 (52.94%), Postives = 118/170 (69.41%), Query Frame = 0 
Query:   13 LRPWCGRPLGL-RGLHLSPPLGKTVAGRYKVTVNRTKPLTYEMSFKPEAIMHQKGFNSFNTAQLENTF--LKKEEIGQD-LPTKMLLEDKFIRQFMHGTWPEALESMVIIKRQHNLIRLAAIISRNRIPPAKVYFLIGYTEELLSFWLKCPVRLELQSGER-EDVIYKYI 177
            LR  C   L L R  H S  L K  AGRY+VT++R++PLTYEM+  P+ I  +K FNSFNT QLE+T+   K  +IG   L  K+ +ED FIR+F+ GTW E   S +I+KRQHN +R++ +I + +I   K+YFL+GYTEE+LS WLKCPV+LELQ  E  +DVIYKYI
Sbjct:    2 LRNLCTPSLVLTRSFHCSRTLSKVRAGRYRVTLDRSRPLTYEMALNPDKIGTEKSFNSFNTGQLEDTYGLAKSRQIGAAPLSHKLFMEDLFIRKFLKGTWSEMFLSEIIVKRQHNTVRVSGLILK-KIQTRKIYFLLGYTEEMLSLWLKCPVKLELQVVEDPKDVIYKYI 170
[Close]
BLAST of 28s ribosomal protein mitochondrial precursor vs. nr
Match: gi|951569792|ref|XP_014483272.1| (PREDICTED: 28S ribosomal protein S24, mitochondrial [Dinoponera quadriceps])

HSP 1 Score: 162.155 bits (409), Expect = 1.034e-47
Identity = 80/155 (51.61%), Postives = 107/155 (69.03%), Query Frame = 0 
Query:   24 RGLHLSPPLGKTVAGRYKVTVNRTKPLTYEMSFKPEAIMHQKGFNSFNTAQLENTFLKKEEIGQDLPTKMLLEDKFIRQFMHGTWPEALESMVIIKRQHNLIRLAAIISRNRIPPAKVYFLIGYTEELLSFWLKCPVRLELQSGER-EDVIYKYI 177
            R  H S  + KT +GRYKVT+NR KPLTYEM+  P  I H+K +N++NT+ +++          + P++  +ED FIR FM GTW     + VIIKRQHN+IR+A IISR  I P K+YFL GYTEE LS+WL+CPV++EL +  R ED+I+KYI
Sbjct:   20 RHFHASAVVNKTQSGRYKVTINRDKPLTYEMACPPHFIAHKKSWNAWNTSNIKD---------GNRPSETTIEDMFIRHFMRGTWHNLFATEVIIKRQHNIIRIAGIISRT-IAPTKIYFLTGYTEEFLSYWLQCPVKIELVTTNRKEDLIFKYI 164
[Close]
BLAST of 28s ribosomal protein mitochondrial precursor vs. nr
Match: gi|1068417053|ref|XP_018053990.1| (PREDICTED: 28S ribosomal protein S24, mitochondrial [Atta colombica])

HSP 1 Score: 162.155 bits (409), Expect = 1.138e-47
Identity = 78/168 (46.43%), Postives = 116/168 (69.05%), Query Frame = 0 
Query:   11 RALRPWCGRPLGLRGLHLSPPLGKTVAGRYKVTVNRTKPLTYEMSFKPEAIMHQKGFNSFNTAQLENTFLKKEEIGQDLPTKMLLEDKFIRQFMHGTWPEALESMVIIKRQHNLIRLAAIISRNRIPPAKVYFLIGYTEELLSFWLKCPVRLELQS-GEREDVIYKYI 177
            R + P   +    R  H S  + K  +GRYK+T+N++KPLTYEM+  P  I H+K +NS+NT+ +++          + P++  LED FIRQFM+GTW     S +IIKRQHN+IR+A I++R  I P+K+YFL GYTEELLS+WL+CP+++EL + G ++++I+KYI
Sbjct:    8 RNILPAVQQTFMQRYFHTSTIVCKVQSGRYKITINKSKPLTYEMANPPHYIAHRKSWNSWNTSNIKD---------GNRPSETALEDMFIRQFMYGTWSNLFASEIIIKRQHNIIRIAGIVTRT-IAPSKIYFLTGYTEELLSYWLQCPIKVELVTIGNKKEMIFKYI 165
[Close]
BLAST of 28s ribosomal protein mitochondrial precursor vs. nr
Match: gi|1070601675|ref|XP_018398259.1| (PREDICTED: 28S ribosomal protein S24, mitochondrial [Cyphomyrmex costatus])

HSP 1 Score: 161.77 bits (408), Expect = 1.479e-47
Identity = 81/168 (48.21%), Postives = 115/168 (68.45%), Query Frame = 0 
Query:   11 RALRPWCGRPLGLRGLHLSPPLGKTVAGRYKVTVNRTKPLTYEMSFKPEAIMHQKGFNSFNTAQLENTFLKKEEIGQDLPTKMLLEDKFIRQFMHGTWPEALESMVIIKRQHNLIRLAAIISRNRIPPAKVYFLIGYTEELLSFWLKCPVRLELQSGE-REDVIYKYI 177
            R + P   + L  R  H S  + K  +GRYK+T+NR KPLTYEM+  P  I H+K +NS+NT+ +++          + P++  +E+ FIRQFM GTWP    S +IIKRQHN+IR+A II+R  I P K+YFL GYTEELLS+WL+CP++LEL + E ++++I+KYI
Sbjct:    8 RNILPVVQQTLMQRYFHTSTIVNKVQSGRYKITINRDKPLTYEMANPPHYIAHRKSWNSWNTSNIKDG---------NRPSETAVEEMFIRQFMWGTWPNLFASEIIIKRQHNIIRIAGIITRT-IAPYKIYFLTGYTEELLSYWLQCPIKLELVTIENKKEIIFKYI 165
[Close]
BLAST of 28s ribosomal protein mitochondrial precursor vs. nr
Match: gi|1009353099|gb|KYM78522.1| (28S ribosomal protein S24, mitochondrial [Atta colombica])

HSP 1 Score: 161.384 bits (407), Expect = 2.626e-47
Identity = 80/175 (45.71%), Postives = 118/175 (67.43%), Query Frame = 0 
Query:    4 ECAAGWSRALRPWCGRPLGLRGLHLSPPLGKTVAGRYKVTVNRTKPLTYEMSFKPEAIMHQKGFNSFNTAQLENTFLKKEEIGQDLPTKMLLEDKFIRQFMHGTWPEALESMVIIKRQHNLIRLAAIISRNRIPPAKVYFLIGYTEELLSFWLKCPVRLELQS-GEREDVIYKYI 177
            +C    S  L P   +    R  H S  + K  +GRYK+T+N++KPLTYEM+  P  I H+K +NS+NT+ +++          + P++  LED FIRQFM+GTW     S +IIKRQHN+IR+A I++R  I P+K+YFL GYTEELLS+WL+CP+++EL + G ++++I+KYI
Sbjct:   10 DCDVNISYIL-PAVQQTFMQRYFHTSTIVCKVQSGRYKITINKSKPLTYEMANPPHYIAHRKSWNSWNTSNIKD---------GNRPSETALEDMFIRQFMYGTWSNLFASEIIIKRQHNIIRIAGIVTRT-IAPSKIYFLTGYTEELLSYWLQCPIKVELVTIGNKKEMIFKYI 173
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BLAST of 28s ribosomal protein mitochondrial precursor vs. nr
Match: gi|170037901|ref|XP_001846793.1| (28S ribosomal protein S24, mitochondrial [Culex quinquefasciatus] >gi|167881235|gb|EDS44618.1| 28S ribosomal protein S24, mitochondrial [Culex quinquefasciatus])

HSP 1 Score: 160.999 bits (406), Expect = 3.345e-47
Identity = 81/155 (52.26%), Postives = 110/155 (70.97%), Query Frame = 0 
Query:   24 RGLHLSPPLGKTVAGRYKVTVNRTKPLTYEMSFKPEAIMHQKGFNSFNTAQLENTFLKKEEIGQDLPTKMLLEDKFIRQFMHGTWPEALESMVIIKRQHNLIRLAAIISRNRIPPAKVYFLIGYTEELLSFWLKCPVRLELQSGE-REDVIYKYI 177
            R LH++    KT +G+YK+T    +PLTYEM+  P  I H+K +NS+NT+ LE         G+   ++ +LED+F+R+FM GTW   + S VIIKRQHN +R+AAII R  IPP K+YFLIGY EELL++WL+CPV LELQ+ E R+DV++KYI
Sbjct:   22 RSLHVTAACAKTQSGKYKITPKGDRPLTYEMANPPHLIAHRKAWNSWNTSNLE---------GEQRASQTMLEDEFVRRFMTGTWHGLVLSEVIIKRQHNHVRIAAIIRRG-IPPRKMYFLIGYCEELLAYWLQCPVTLELQTTEDRKDVVFKYI 166
The following BLAST results are available for this feature:
BLAST of 28s ribosomal protein mitochondrial precursor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000012394.308e-6359.52supercontig:LSalAtl2s:LSalAtl2s1202:102886:103505:... [more]
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BLAST of 28s ribosomal protein mitochondrial precursor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
gi|74868306|sp|Q9VCC3.1|RT24_DROME4.902e-4748.73RecName: Full=28S ribosomal protein S24, mitochond... [more]
gi|74731578|sp|Q96EL2.1|RT24_HUMAN5.557e-3339.41RecName: Full=28S ribosomal protein S24, mitochond... [more]
gi|81880396|sp|Q9CQV5.1|RT24_MOUSE4.546e-3138.20RecName: Full=28S ribosomal protein S24, mitochond... [more]
gi|122136344|sp|Q2M2T7.1|RT24_BOVIN2.228e-3040.24RecName: Full=28S ribosomal protein S24, mitochond... [more]
gi|82185415|sp|Q6NTS3.1|RT24A_XENLA7.370e-2845.38RecName: Full=28S ribosomal protein S24-A, mitocho... [more]
gi|123899841|sp|Q3B8K3.1|RT24B_XENLA7.530e-2845.38RecName: Full=28S ribosomal protein S24-B, mitocho... [more]
gi|82192621|sp|Q502C1.1|RT24_DANRE1.089e-2638.06RecName: Full=28S ribosomal protein S24, mitochond... [more]
gi|75006904|sp|Q688C0.1|RT24_CAEEL7.307e-1934.36RecName: Full=28S ribosomal protein S24, mitochond... [more]
gi|74791681|sp|Q61T16.1|RT24_CAEBR2.802e-1833.96RecName: Full=28S ribosomal protein S24, mitochond... [more]
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BLAST of 28s ribosomal protein mitochondrial precursor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|225710880|gb|ACO11286.1|3.569e-6060.9028S ribosomal protein S24, mitochondrial precursor... [more]
gi|225712556|gb|ACO12124.1|4.035e-5959.5228S ribosomal protein S24, mitochondrial precursor... [more]
gi|290561411|gb|ADD38106.1|5.188e-5959.5228S ribosomal protein S24, mitochondrial [Lepeopht... [more]
gi|225719578|gb|ACO15635.1|4.134e-5858.1328S ribosomal protein S24, mitochondrial precursor... [more]
gi|1325256652|ref|XP_023322231.1|2.920e-5152.9428S ribosomal protein S24, mitochondrial-like [Eur... [more]
gi|951569792|ref|XP_014483272.1|1.034e-4751.61PREDICTED: 28S ribosomal protein S24, mitochondria... [more]
gi|1068417053|ref|XP_018053990.1|1.138e-4746.43PREDICTED: 28S ribosomal protein S24, mitochondria... [more]
gi|1070601675|ref|XP_018398259.1|1.479e-4748.21PREDICTED: 28S ribosomal protein S24, mitochondria... [more]
gi|1009353099|gb|KYM78522.1|2.626e-4745.7128S ribosomal protein S24, mitochondrial [Atta col... [more]
gi|170037901|ref|XP_001846793.1|3.345e-4752.2628S ribosomal protein S24, mitochondrial [Culex qu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold450_size166944supercontigscaffold450_size166944:42299..42832 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteC:cytoplasmic part
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold450_size166944-processed-gene-0.11-mRNA-1snap_masked-scaffold450_size166944-processed-gene-0.11-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold450_size166944:42299..42832-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold450_size166944-processed-gene-0.11 ID=snap_masked-scaffold450_size166944-processed-gene-0.11|Name=28s ribosomal protein mitochondrial precursor|organism=Tigriopus kingsejongensis|type=gene|length=534bp|location=Sequence derived from alignment at scaffold450_size166944:42299..42832- (Tigriopus kingsejongensis)
ATGTGGGTCGAATGCGCCGCCGGATGGAGCCGAGCTCTCCGCCCGTGGTG
CGGGCGCCCGCTGGGCCTCCGTGGCCTCCACCTCTCCCCGCCCCTGGGCA
AGACGGTGGCGGGTCGCTACAAAGTGACGGTGAACCGTACCAAACCCCTC
ACGTACGAGATGTCGTTCAAGCCGGAGGCCATCATGCACCAAAAGGGCTT
CAACAGCTTTAACACGGCCCAGTTGGAGAACACCTTCCTGAAGAAGGAGG
AGATCGGCCAGGACTTGCCGACCAAGATGCTCCTCGAGGACAAATTTATT
CGTCAGTTCATGCACGGGACCTGGCCCGAGGCTCTGGAGTCGATGGTGAT
CATCAAGCGGCAGCACAACCTCATCCGTTTGGCCGCCATCATCAGCCGGA
ATCGCATTCCCCCCGCCAAAGTCTACTTCCTCATCGGCTACACTGAAGAG
CTGCTCAGTTTTTGGCTCAAGTGTCCTGTCCGACTGGAACTTCAGTCCGG
GGAGCGCGAGGACGTCATCTACAAGTACATCTAG
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Synonyms
The feature '28s ribosomal protein mitochondrial precursor' has the following synonyms
Synonym
Tk00127
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