u4 u6 small nuclear ribonucleoprotein, snap_masked-scaffold57_size444674-processed-gene-0.3 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of u4 u6 small nuclear ribonucleoprotein vs. L. salmonis genes
Match: EMLSAG00000006156 (supercontig:LSalAtl2s:LSalAtl2s336:420428:421924:-1 gene:EMLSAG00000006156 transcript:EMLSAT00000006156 description:"augustus_masked-LSalAtl2s336-processed-gene-4.9") HSP 1 Score: 639.032 bits (1647), Expect = 0.000e+0 Identity = 317/516 (61.43%), Postives = 392/516 (75.97%), Query Frame = 0
Query: 1 MSDEDDDLRYVKRQKIVHYGSLADATGAARTRQQEEDDEDDEDGPGGPNSNIEISHEYLPLNRDERLGEKD---EILEEFERRKRARLINVSTDDAQVKKDLRALGRPICYFGEGPAERRHRLRDLLSQLGEDAIQKRQEAEDARAKEQREHDETTWYHEGPPALRDARQAMATYSLPRARARIGRQKVE--AEMAESA-RMARNQEIQRNLKALDLEASQIADTRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATV-SLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLWT 509
MSD D+D++YVKR + VH+GSLA+ G++ DG +++ S EYLPL+ E GE D EILEEFERRKRAR I V TDD ++K+DLR LG PIC FGEGPA+RR+RLRD LS+ GEDA++KR++ A +EH+ETTWYHEGP +LR AR+ +A YSLPRA+ RI R K E A + E A MAR QEIQ+ LK+LD+ ASQIADTRPISWC FSP+S+ L TGSWSGLCK+WSVPDC+E+ TLRGH+ +IG++ FNP AT+ + P +ASC G V +W+LES +P+ ++RVSR +HP GR LA C YDNSWRL+DLE E+LHQEGHSK VHCIAFQNDG+LA TGG+DSFGR+WD+RTGQCIMFLEGHLKGI+ VDWS DGYH TGS+DN+C++WDLR+R EYTIPAH NVVSNVVF++ +Y+LT+S+DGTAKLWA KTWQ +A+LKGHD RLM C I+ D S++ATCSYDRTFKLW+
Sbjct: 1 MSD-DEDVQYVKRSRHVHFGSLAENVGSS------------VDGA----AHVSQSSEYLPLSAHENGGEDDGKREILEEFERRKRARAIPVPTDDDEIKRDLRTLGEPICLFGEGPADRRNRLRDFLSEFGEDAVKKRRD----EAITVKEHEETTWYHEGPSSLRVARKWIAKYSLPRAKERIARLKAEESARLKEEALEMARXQEIQKRLKSLDVVASQIADTRPISWCTFSPNSQYLLTGSWSGLCKLWSVPDCKEIRTLRGHSSNIGSIVFNPHATLEGHSNKDPCMASCSQDGSVKLWNLESDEPIADIEGHDSRVSRCAYHPSGRFLATCVYDNSWRLWDLEQLQEVLHQEGHSKPVHCIAFQNDGSLALTGGLDSFGRIWDLRTGQCIMFLEGHLKGIIGVDWSRDGYHCATGSSDNACKIWDLRKRKIEYTIPAHTNVVSNVVFDE----DYLLTASYDGTAKLWARKTWQPLASLKGHDLRLMDCAISPDRSYIATCSYDRTFKLWS 491
BLAST of u4 u6 small nuclear ribonucleoprotein vs. L. salmonis genes
Match: EMLSAG00000000276 (supercontig:LSalAtl2s:LSalAtl2s1041:88294:89557:1 gene:EMLSAG00000000276 transcript:EMLSAT00000000276 description:"augustus_masked-LSalAtl2s1041-processed-gene-0.10") HSP 1 Score: 102.064 bits (253), Expect = 2.707e-24 Identity = 70/269 (26.02%), Postives = 120/269 (44.61%), Query Frame = 0
Query: 250 DCEEVI-TLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLE--------TRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNV-VSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
D E+++ L+GH+ I V ++P +S + + V VW + SSQ L + V+ + H G ++ + + D W DL T D S A+ C F DG + TG DS ++WD++ Q + GH I + +S +GY++ T + D ++WDLR+ TI + V ++ F++S Y+ + D +++ K WQ + H + G ++VA+ S DRT KL+
Sbjct: 50 DTEQIVANLKGHSKKISRVIYHP-------SSDDTVITASHDTTVRVWHVPSSQTLKILRIHDGPVTGLSLHATGDYILSTSTDRYWAFTDLRSGRLITKVTADSSAGGASSSVALTCAQFHPDGLIFGTGTSDSEIKIWDLKEQQNVANFPGHNGSITALSFSENGYYLATAADDACVKLWDLRKLKNFKTIALEDGYEVRDLCFDQS--GTYLAVAGTD--VRIYQCKQWQELRVFNDHTAMATGVRFGKHANYVASTSMDRTLKLY 307
BLAST of u4 u6 small nuclear ribonucleoprotein vs. L. salmonis genes
Match: EMLSAG00000001111 (supercontig:LSalAtl2s:LSalAtl2s1186:117586:119588:-1 gene:EMLSAG00000001111 transcript:EMLSAT00000001111 description:"maker-LSalAtl2s1186-snap-gene-1.40") HSP 1 Score: 99.3673 bits (246), Expect = 9.315e-23 Identity = 74/265 (27.92%), Postives = 117/265 (44.15%), Query Frame = 0
Query: 249 PDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNN-VVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIA----ADGSFVATCSYDRTFKLW 508
P+ TL GH + V F+P +G LAS + + VW + + +S V + R L + + D + ++++L + L +GHS V C F L +G D R+WD+RTG+C+ L H + V ++ DG I++ S D CR+WD T+ ++N VS V F SP +YIL ++ D T KLW + + T GH + C A G ++ + S D +W
Sbjct: 18 PNYSLKFTLAGHTKGVSAVKFSP--------NGEWLASSSADKLIKVWGSYDGKFEKTISGHKLGISDVAWSSDSRLLVSASDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLVVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGXCRIWDTASGQCLKTLIDNDNPPVSFVKF--SPNGKYILAATLDNTLKLWEYSKGKCLKTYSGHRNEKY-CVFANFSVTGGKWIVSGSEDNMVYIW 271 HSP 2 Score: 92.8189 bits (229), Expect = 1.320e-20 Identity = 68/290 (23.45%), Postives = 133/290 (45.86%), Query Frame = 0
Query: 211 LEASQIADTRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCI-MFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRR----------RNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDI 489
L+ + T+ +S +FSP+ + LA+ S L KVW D + T+ GH I +V ++ + + ++AS + +W L S + L V F+P + + ++D S R++D+ T L HS V + F DG+L + D R+WD +GQC+ ++ + V +S +G +I+ + DN+ ++W+ + RN++Y + A+ +V ++I++ S D +W +T + + L+GH ++ ++
Sbjct: 22 LKFTLAGHTKGVSAVKFSPNGEWLASSSADKLIKVWGSYDGKFEKTISGHKLGISDVAWSSDSRLLVSAS--------DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLVVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGXCRIWDTASGQCLKTLIDNDNPPVSFVKFSPNGKYILAATLDNTLKLWEYSKGKCLKTYSGHRNEKYCVFANFSVTGG---------KWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVLNFEL 294 HSP 3 Score: 82.8037 bits (203), Expect = 3.008e-17 Identity = 45/162 (27.78%), Postives = 78/162 (48.15%), Query Frame = 0
Query: 351 GHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLWTSKS 512
GH+K V + F +G + D +VW G+ + GH GI V WS D +++ S D + ++W+L T+ H+N V F +P+S +++ SFD + ++W +T + + TL H + DGS + + SYD ++W + S
Sbjct: 28 GHTKGVSAVKFSPNGEWLASSSADKLIKVWGSYDGKFEKTISGHKLGISDVAWSSDSRLLVSASDDKTLKIWELSSGKCLKTLKGHSNYVFCCNF--NPQSNLVVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGXCRIWDTAS 187
BLAST of u4 u6 small nuclear ribonucleoprotein vs. L. salmonis genes
Match: EMLSAG00000001730 (supercontig:LSalAtl2s:LSalAtl2s129:321159:324031:-1 gene:EMLSAG00000001730 transcript:EMLSAT00000001730 description:"maker-LSalAtl2s129-snap-gene-3.7") HSP 1 Score: 98.2117 bits (243), Expect = 6.871e-22 Identity = 86/337 (25.52%), Postives = 148/337 (43.92%), Query Frame = 0
Query: 183 RQKVEAEMAESA---RMARNQEIQRNLKALDLEASQIA---DTRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCD-IAADGSFVATCSYDRTFKLWTSKS 512
R+K+ + SA R I+ N + + ++ D I+ QFS + + +GS KVWS + + TL GH + + VS S D + VW+ ++ + + V + H + + + D++ R++D+ET + L GH AV C+ Q DG L +G D +VW+ +C+ L GH + + + DG H+++GS D S RVWD+ ++ + H ++ S + R+ +++ + D T K+W Q + TL GH+ + + FV T S D T KLW K+
Sbjct: 283 RRKLSSGFVHSACKTSYMRQHNIEMNWRIRPIRPPKVLKGHDDHVITCLQFS--NNRIVSGSDDNTLKVWSATTGKCLRTLVGHTGGVWSXQMRDNIIVS--------GSTDR--SLKVWNADAGTCVHTLYGHTSTVRCMHLHE--NQVVSGSRDSTLRIWDIETGECLHILAGHLAAVRCV--QYDGRLVVSGAYDYMVKVWNPEREECLHTLSGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGACKHALMGHQSLTSGMEL----RNNILVSGNADSTVKVWDITNGQCLQTLSGHNKHQSAVTCLQFNSKFVITSSDDGTVKLWDVKT 597
BLAST of u4 u6 small nuclear ribonucleoprotein vs. L. salmonis genes
Match: EMLSAG00000003976 (supercontig:LSalAtl2s:LSalAtl2s213:19395:20797:-1 gene:EMLSAG00000003976 transcript:EMLSAT00000003976 description:"augustus_masked-LSalAtl2s213-processed-gene-0.0") HSP 1 Score: 89.7373 bits (221), Expect = 1.081e-19 Identity = 63/275 (22.91%), Postives = 116/275 (42.18%), Query Frame = 0
Query: 256 TLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMD----------------------GYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
TL+GH D + ++ F+ + G L SC + + +W ++ + L + VS V F P G ++ + + D + ++++ T + GH + V + +DG+L + D RVW T C L H + C+ W+ + G + +GS D + +VWD+ +T H+N V +V+ P +Y+L++S D T ++W + L H D ++ + S D+T K+W
Sbjct: 117 TLKGHTDCVQDIGFD--------SPGKLLVSCSADMSIKIWDFQTYECLKTLQGHDHNVSSVCFTPNGDYILSASRDKTIKMWETATGYCVRTYTGHREWVRNVRVLHDGSLLASCSNDQSVRVWSTSTKDCKDELRDHDHVVECISWAPESAVGPINEALTLSGEDGVKKRTGPFLASGSRDKTIKVWDVSTGQVLFTYVGHDNWVRGLVWH--PGGKYLLSASDDKTIRVWDIAHKRCHKRLDSHSHFCTSIDFHKTYPYIVSGSVDQTIKIW 381 HSP 2 Score: 78.1814 bits (191), Expect = 6.436e-16 Identity = 41/136 (30.15%), Postives = 74/136 (54.41%), Query Frame = 0
Query: 377 GRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLWTSKS 512
G +WD TG L+GH + + + G +++ S D S ++WD + T+ H++ VS+V F +P +YIL++S D T K+W + T + T GH + + DGS +A+CS D++ ++W++ +
Sbjct: 104 GHLWDFETGDYERTLKGHTDCVQDIGFDSPGKLLVSCSADMSIKIWDFQTYECLKTLQGHDHNVSSVCF--TPNGDYILSASRDKTIKMWETATGYCVRTYTGHREWVRNVRVLHDGSLLASCSNDQSVRVWSTST 237 HSP 3 Score: 62.003 bits (149), Expect = 1.154e-10 Identity = 47/194 (24.23%), Postives = 83/194 (42.78%), Query Frame = 0
Query: 337 LFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAAD----------------------GSFVATCSYDRTFKLW 508
L+D ET D +GH+ V I F + G L + D ++WD +T +C+ L+GH + V ++ +G +I++ S D + ++W+ T H V NV + + S D + ++W++ T L+ HD + A + G F+A+ S D+T K+W
Sbjct: 106 LWDFETGDYERTLKGHTDCVQDIGFDSPGKLLVSCSADMSIKIWDFQTYECLKTLQGHDHNVSSVCFTPNGDYILSASRDKTIKMWETATGYCVRTYTGHREWVRNVRVLHD--GSLLASCSNDQSVRVWSTSTKDCKDELRDHDHVVECISWAPESAVGPINEALTLSGEDGVKKRTGPFLASGSRDKTIKVW 297 HSP 4 Score: 58.9214 bits (141), Expect = 1.092e-9 Identity = 54/255 (21.18%), Postives = 92/255 (36.08%), Query Frame = 0
Query: 227 FSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAAS----------------------------------GPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHP----------------------MGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLR 425
F K+L + S K+W E + TL+GH+ ++ +V F P L+AS G LASC + V VWS + + + V + + P G LA+ + D + +++D+ T L GH V + + G + D RVWD+ +C L+ H +D+ +I++GS D + ++W+ R
Sbjct: 130 FDSPGKLLVSCSADMSIKIWDFQTYECLKTLQGHDHNVSSVCFTPNGDYILSASRDKTIKMWETATGYCVRTYTGHREWVRNVRVLHDGSLLASCSNDQSVRVWSTSTKDCKDELRDHDHVVECISWAPESAVGPINEALTLSGEDGVKKRTGPFLASGSRDKTIKVWDVSTGQVLFTYVGHDNWVRGLVWHPGGKYLLSASDDKTIRVWDIAHKRCHKRLDSHSHFCTSIDFHKTYPYIVSGSVDQTIKIWECR 384
BLAST of u4 u6 small nuclear ribonucleoprotein vs. L. salmonis genes
Match: EMLSAG00000010784 (supercontig:LSalAtl2s:LSalAtl2s714:17193:18452:-1 gene:EMLSAG00000010784 transcript:EMLSAT00000010784 description:"snap_masked-LSalAtl2s714-processed-gene-0.5") HSP 1 Score: 87.8113 bits (216), Expect = 3.893e-19 Identity = 65/269 (24.16%), Postives = 119/269 (44.24%), Query Frame = 0
Query: 254 VITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESS-QPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVH-CIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTW----QHMATLKGH----DSRLMGCDIAADGSFVATCSYDRTFKLWTSKS 512
++ L GH I + F+P + LA+SG + C +N+W++ + + + F G +L + D + +FD T + +GH+ V+ C + L +G D + WD R C+ + + V ++ IITG DN ++WD+R+ N YT+ H + ++ + SP Y LT+S D + ++W + + + + GH + L+ C + DG+ +A S DR +W + S
Sbjct: 60 IMLLSGHEGEIYSAKFHPDGNI-LASSGFDRQICR---LLNLWNVYGECENFAVISGHTGAILDLNFSGDGSYLYTSSTDKTVGVFDSTTGQRIKRLKGHTGFVNTCHPARRGPPLIVSGSDDCTIKTWDQRKRGCVHSFNNTFQ-VTGVTYNDTADQIITGGIDNDLKIWDIRKNNIIYTLSGHTDTITGLSL--SPDGSYALTNSMDNSLRIWDIRPFVTGERCVKIFSGHKHNFEKNLLRCTWSPDGAMIAAGSSDRFVHIWXTTS 321 HSP 2 Score: 83.1889 bits (204), Expect = 1.364e-17 Identity = 56/214 (26.17%), Postives = 94/214 (43.93%), Query Frame = 0
Query: 303 PLIAFPNLEARVSRVQFHPMGRHLAACAYD-------NSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGI-VCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
P++ E + +FHP G LA+ +D N W ++ ++ GH+ A+ + F DG+ T D V+D TGQ I L+GH + C I++GS D + + WD R+R + + NN + ++ I+T D K+W + + TL GH + G ++ DGS+ T S D + ++W
Sbjct: 59 PIMLLSGHEGEIYSAKFHPDGNILASSGFDRQICRLLNLWNVYGECENFAVI--SGHTGAILDLNFSGDGSYLYTSSTDKTVGVFDSTTGQRIKRLKGHTGFVNTCHPARRGPPLIVSGSDDCTIKTWDQRKRG---CVHSFNNTFQVTGVTYNDTADQIITGGIDNDLKIWDIRKNNIIYTLSGHTDTITGLSLSPDGSYALTNSMDNSLRIW 267 HSP 3 Score: 73.1738 bits (178), Expect = 2.436e-14 Identity = 82/361 (22.71%), Postives = 144/361 (39.89%), Query Frame = 0
Query: 168 AMATYSLPRARARIGRQKVEAEMAESARMARNQEIQRNLKALDLEASQIADTRPISWCQFSPDSKMLATGSWSG----LCKVWSV-PDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRH---LAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLR------RRNKEYTIPAHNNVVSNVVFEK-------SPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKL 507
++A + PR + +K E ++A+ R+ ++ + L +I + F PD +LA+ + L +W+V +CE + GH I ++ F + G L + + V V+ + Q + V+ HP R + + + D + + +D R +H ++ V + + + TGG+D+ ++WD+R I L GH I + S DG + +T S DNS R+WD+R R K ++ HN FEK SP I S D +W + + + + L GH + D V + S D+ L
Sbjct: 25 SVAVFKKPRDELEVLNKK-EIKVADGP--PRSSNLEAPIMLLSGHEGEIYSAK------FHPDGNILASSGFDRQICRLLNLWNVYGECENFAVISGHTGAILDLNF--------SGDGSYLYTSSTDKTVGVFDSTTGQRIKRLKGHTGFVNTC--HPARRGPPLIVSGSDDCTIKTWDQRKRG-CVHSFNNTFQVTGVTYNDTADQIITGGIDNDLKIWDIRKNNIIYTLSGHTDTITGLSLSPDGSYALTNSMDNSLRIWDIRPFVTGERCVKIFSGHKHN-------FEKNLLRCTWSPDGAMIAAGSSDRFVHIWXTTSRRILFKLPGHLGSVNEIDFHKLEPIVLSASSDKNIYL 358
BLAST of u4 u6 small nuclear ribonucleoprotein vs. L. salmonis genes
Match: EMLSAG00000003862 (supercontig:LSalAtl2s:LSalAtl2s209:625539:633615:-1 gene:EMLSAG00000003862 transcript:EMLSAT00000003862 description:"maker-LSalAtl2s209-snap-gene-5.15") HSP 1 Score: 89.7373 bits (221), Expect = 3.917e-19 Identity = 63/221 (28.51%), Postives = 96/221 (43.44%), Query Frame = 0
Query: 221 PISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIP----AHN 437
P+ FSPD ML + S G ++W I RGH + +V F+P G AS V +WS E L F + V + FHP ++A+ + D S R++D + + + GH AV +AF DG +GG DS WD+ G + L H + + + +S DG + STD +W ++ E ++ AHN
Sbjct: 403 PVYGISFSPDKSMLLSCSEDGTIRLW--------ICYRGHMYAVWHVKFSP--------QGYYFASAGHDKTVMLWSTEQHHSLRIFAGHFSDVDCIAFHPNCNYIASGSSDRSVRVWDCVSGNCVRLMTGHKTAVSTLAFSPDGRFLASGGRDSRVLFWDIAHGHLLADLSNHSQTVTALAFSRDGNILAXSSTDFXLAMWXFQKLINESSLEDVNVAHN 607 HSP 2 Score: 81.6481 bits (200), Expect = 1.192e-16 Identity = 63/276 (22.83%), Postives = 108/276 (39.13%), Query Frame = 0
Query: 222 ISWCQFSPDSKMLATGSWSGLCKVWSVP------------------DCEEVI-------------TLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLW 466
++ + + DS +L G KVWS+ D ++V+ TL GH+ + ++F+P ++ L SC G + +W I + V V+F P G + A+ +D + L+ E L GH V CIAF + +G D RVWD +G C+ + GH + + +S DG + +G D+ WD+ + + H+ V+ + F + + SS D +W
Sbjct: 331 LTAIEITDDSSILGAGFSDAAIKVWSLLPSKLKVLKSADELGDINRDADDVLHRMMEDNSGVVSRTLYGHSGPVYGISFSPDKSM--------LLSCSEDGTIRLW--------ICYRGHMYAVWHVKFSPQGYYFASAGHDKTVMLWSTEQHHSLRIFAGHFSDVDCIAFHPNCNYIASGSSDRSVRVWDCVSGNCVRLMTGHKTAVSTLAFSPDGRFLASGGRDSRVLFWDIAHGHLLADLSNHSQTVTALAFSRD--GNILAXSSTDFXLAMW 588 HSP 3 Score: 71.2478 bits (173), Expect = 2.811e-13 Identity = 47/195 (24.10%), Postives = 75/195 (38.46%), Query Frame = 0
Query: 314 VSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
V + F P L +C+ D + RL+ + GH AV + F G + G D +W + GH + C+ + + +I +GS+D S RVWD N + H VS + F SP ++ + D W +A L H + + DG+ +A S D +W
Sbjct: 404 VYGISFSPDKSMLLSCSEDGTIRLW--------ICYRGHMYAVWHVKFSPQGYYFASAGHDKTVMLWSTEQHHSLRIFAGHFSDVDCIAFHPNCNYIASGSSDRSVRVWDCVSGNCVRLMTGHKTAVSTLAF--SPDGRFLASGGRDSRVLFWDIAHGHLLADLSNHSQTVTALAFSRDGNILAXSSTDFXLAMW 588 HSP 4 Score: 55.4546 bits (132), Expect = 2.597e-8 Identity = 35/158 (22.15%), Postives = 65/158 (41.14%), Query Frame = 0
Query: 351 GHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
GHS V+ I+F D ++ + D R+W + GH+ + V +S GY+ + D + +W + + H + V + F P YI + S D + ++W + + + GH + + + DG F+A+ D W
Sbjct: 399 GHSGPVYGISFSPDKSMLLSCSEDGTIRLW--------ICYRGHMYAVWHVKFSPQGYYFASAGHDKTVMLWSTEQHHSLRIFAGHFSDVDCIAFH--PNCNYIASGSSDRSVRVWDCVSGNCVRLMTGHKTAVSTLAFSPDGRFLASGGRDSRVLFW 546
BLAST of u4 u6 small nuclear ribonucleoprotein vs. L. salmonis genes
Match: EMLSAG00000002626 (supercontig:LSalAtl2s:LSalAtl2s152:460087:461246:-1 gene:EMLSAG00000002626 transcript:EMLSAT00000002626 description:"maker-LSalAtl2s152-augustus-gene-4.9") HSP 1 Score: 81.2629 bits (199), Expect = 6.362e-17 Identity = 59/182 (32.42%), Postives = 90/182 (49.45%), Query Frame = 0
Query: 332 DNSWRLFDLETRDELLHQEGHSKAVHCI--AFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLR--RRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSF-DGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
D + L+D+E+ L GH+ V I A + +G D VWDMRTG + + EGH I V + G I TGS D + R++DLR R +YT + V+ + F S R IL + + D +W S +A L GH++R+ ++ DG+ +AT S+D + K+W
Sbjct: 184 DATCALWDVESGQVLQSFHGHNADVMSIDLAPGPNPNTFVSGACDKMAFVWDMRTGNYVQYFEGHESDINAVKYHPSGDAIGTGSDDATXRLFDLRAXREXTKYTKESILFGVNAIDFSTSGR---ILFAGYNDYAVNMWDSLKTHRIAMLYGHENRVSSLKVSPDGTAIATGSWDYSLKVW 362 HSP 2 Score: 76.2554 bits (186), Expect = 3.046e-15 Identity = 57/206 (27.67%), Postives = 86/206 (41.75%), Query Frame = 0
Query: 219 TRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLH--QEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVW 422
T +S C F + TGS C +W V + + + GHN + ++ P + SG +CD V W + + + F E+ ++ V++HP G + + D + RLFDL E +E V+ I F G + G D +WD I L GH + + S DG I TGS D S +VW
Sbjct: 163 TSYMSCCLFPGSDNQVLTGSGDATCALWDVESGQVLQSFHGHNADVMSIDLAPGPNPNTFVSG----ACDKMAFV--WDMRTGNYVQYFEGHESDINAVKYHPSGDAIGTGSDDATXRLFDLRAXREXTKYTKESILFGVNAIDFSTSGRILFAGYNDYAVNMWDSLKTHRIAMLYGHENRVSSLKVSPDGTAIATGSWDYSLKVW 362 HSP 3 Score: 67.781 bits (164), Expect = 1.793e-12 Identity = 65/268 (24.25%), Postives = 113/268 (42.16%), Query Frame = 0
Query: 217 ADTRPISW---CQFSPDSKMLATGSWSGLCKVWSVPDCEEVI----TLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHP--MGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMR--------TGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWA 467
A T P +W C + ++A G V+ + E+V T+ H ++ F L SG A+C +W +ES Q L +F A V + P + A D ++D+ T + + + EGH ++ + + G TG D+ R++D+R T + I+F G+ +D+S G + G D + +WD + ++ + H N VS++ + SP I T S+D + K+WA
Sbjct: 112 AVTMPTTWVMACAYGISGNVVACGGLDNKVTVYPLTLEEDVAIKKRTVGTHTSYMSCCLFPGSDNQVLTGSGD--ATC------ALWDVESGQVLQSFHGHNADVMSIDLAPGPNPNTFVSGACDKMAFVWDMRTGNYVQYFEGHESDINAVKYHPSGDAIGTGSDDATXRLFDLRAXREXTKYTKESILF------GVNAIDFSTSGRILFAGYNDYAVNMWDSLKTHRIAMLYGHENRVSSL--KVSPDGTAIATGSWDYSLKVWA 363 HSP 4 Score: 51.2174 bits (121), Expect = 3.808e-7 Identity = 38/189 (20.11%), Postives = 78/189 (41.27%), Query Frame = 0
Query: 324 RHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMF----LEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
RHL + + D ++D + ++ + V A+ G + GG+D+ V+ + + + + H + C + ++TGS D +C +WD+ + HN V ++ P ++ + D A +W +T ++ +GH+S + G + T S D T +L+
Sbjct: 88 RHLVSSSQDGKLIVWDAFSTNKEHAVTMPTTWVMACAYGISGNVVACGGLDNKVTVYPLTLEEDVAIKKRTVGTHTSYMSCCLFPGSDNQVLTGSGDATCALWDVESGQVLQSFHGHNADVMSIDLAPGPNPNTFVSGACDKMAFVWDMRTGNYVQYFEGHESDINAVKYHPSGDAIGTGSDDATXRLF 276
BLAST of u4 u6 small nuclear ribonucleoprotein vs. L. salmonis genes
Match: EMLSAG00000000110 (supercontig:LSalAtl2s:LSalAtl2s101:232692:234160:1 gene:EMLSAG00000000110 transcript:EMLSAT00000000110 description:"augustus_masked-LSalAtl2s101-processed-gene-2.0") HSP 1 Score: 81.2629 bits (199), Expect = 7.249e-17 Identity = 82/298 (27.52%), Postives = 127/298 (42.62%), Query Frame = 0
Query: 226 QFSPDSKMLATGSWSGLCKVWSVPDC-----EEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGE-VNVWSLES------SQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQ-NDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNK--EYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
FS DS+ L +GS G VW DC VI LR + T S AASG NL C + ++ + + ++ L F E +S +F R + D +DL T + +GH+ + ++ + + + T VD R+WD+RT C GH + V + G H +T S D + R+WD+R + Y P N+ + V S R +L SS D + +W + H+ L GHD+R+ A G +A+ S+D + K W
Sbjct: 104 HFSGDSRHLVSGSLDGKLIVW---DCWTSNKTMVIPLRSA----------WVMTSSFAASG-NLVGCGGMDNMLTIYDINNRDANGLAKILYEFMGYEGFLSSCKFIDDNRVVTGSG-DMKIMEWDLTTGKKTQDIDGHNGDIAGLSLKPGESDVFVTSSVDRTCRIWDIRTSSCQQIFWGHDADVNSVYFHPCGNHFVTCSEDKTARLWDIRSDQEIAVYXPPTPNSNFTCVATTVSGR--ILLCSSDDASIHMWDLVSKAHLGNLCGHDNRITXLSXAPSGLGIASSSWDTSVKCW 384 HSP 2 Score: 65.855 bits (159), Expect = 7.019e-12 Identity = 52/205 (25.37%), Postives = 89/205 (43.41%), Query Frame = 0
Query: 313 RVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQC-----IMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLWTSKS 512
+V+ + F RHL + + D ++D T ++ + S V +F G L GG+D+ ++D+ I++ +G + +D ++TGS D WDL K I HN ++ + K S+ +TSS D T ++W +T GHD+ + G+ TCS D+T +LW +S
Sbjct: 99 KVTCIHFSGDSRHLVSGSLDGKLIVWDCWTSNKTMVIPLRSAWVMTSSFAASGNLVGCGGMDNMLTIYDINNRDANGLAKILYEFMGYEGFLSSCKFIDDNRVVTGSGDMKIMEWDLTTGKKTQDIDGHNGDIAGLSL-KPGESDVFVTSSVDRTCRIWDIRTSSCQQIFWGHDADVNSVYFHPCGNHFVTCSEDKTARLWDIRS 302 HSP 3 Score: 55.4546 bits (132), Expect = 1.498e-8 Identity = 49/205 (23.90%), Postives = 87/205 (42.44%), Query Frame = 0
Query: 222 ISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDEL--LHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDL 424
+S C+F D++++ TGS W + ++ + GHN I ++ P + S + +C +W + +S F +A V+ V FHP G H C+ D + RL+D+ + E+ + C+A G + D+ +WD+ + + L GH I + + G I + S D S + W L
Sbjct: 190 LSSCKFIDDNRVV-TGSGDMKIMEWDLTTGKKTQDIDGHNGDIAGLSLKPGESDVFVTSSVD-RTC------RIWDIRTSSCQQIFWGHDADVNSVYFHPCGNHFVTCSEDKTARLWDIRSDQEIAVYXPPTPNSNFTCVATTVSGRILLCSSDDASIHMWDLVSKAHLGNLCGHDNRITXLSXAPSGLGIASSSWDTSVKCWAL 386
BLAST of u4 u6 small nuclear ribonucleoprotein vs. L. salmonis genes
Match: EMLSAG00000005405 (supercontig:LSalAtl2s:LSalAtl2s290:443342:466882:1 gene:EMLSAG00000005405 transcript:EMLSAT00000005405 description:"augustus_masked-LSalAtl2s290-processed-gene-4.1") HSP 1 Score: 78.1814 bits (191), Expect = 5.060e-16 Identity = 70/301 (23.26%), Postives = 120/301 (39.87%), Query Frame = 0
Query: 257 LRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQE----GHSKAVHCIAFQND-------GALAC----------------------------------TGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNV---VSNVVFEKSPRSEYILTSSFDG-TAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
LRGH + + + A NL S G++ VW S+ + A P + V + P G +A DN +++L++R+ + GH+ + C F +D G + C +G D+ ++WD+R G C GH I V + G TGS D + +++D+ ++E +H+N+ V++V F KS R +L + +D +W + + L GHD+R+ + G V T S+D K+W
Sbjct: 51 LRGH--------LSKIYAMHWGAESRNLVSASQDGKLIVWDSYSTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYNLKSREGSVRVSRELPGHTGYLSCCRFLDDNLIVTSSGDMTCALWDIETGQQTTTYTGHTGDVMSLSLSPDSRTFVSGACDASAKLWDIRDGMCKQTFPGHESDINAVTFFPQGTAFCTGSDDATVKLYDI-XADQELAQYSHDNIICGVTSVAFSKSGR---LLMAGYDDFNVNVWDTLRVERAGVLAGHDNRVSCLGVTDXGMAVXTGSWDSFLKIW 339 HSP 2 Score: 60.077 bits (144), Expect = 4.338e-10 Identity = 74/343 (21.57%), Postives = 135/343 (39.36%), Query Frame = 0
Query: 161 ALRDARQAMATYSLPRARAR---IGRQKVEAEMAESARMARNQEIQRNLKALDL-EASQIADTRPISW--------------------CQFSPDSKMLATGSWSGLCKVWSVPDCEEVI----TLRGHNDHIGNVTF---NPLATVSLAASGPNLASCDSQGEVN--VWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQE--GHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFL--EGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLW 466
A+RD R+A +L +A IGR ++ +++ + ++ +L ASQ D + I W C ++P +A G +C ++++ E + L GH ++ F N + T S G++ +W +E+ Q + V + P R + A D S +L+D+ RD + Q GH ++ + F G CTG D+ +++D+ Q + + + G+ V +S G ++ G D + VWD R + + H+N VS + + T S+D K+W
Sbjct: 17 AIRDGRKAACDTTLAQAAGTMDPIGRIQMRTRRXLRGHLSKIYAMHWGAESRNLVSASQ--DGKLIVWDSYSTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYNLKSREGSVRVSRELPGHTGYLSCCRFLDDNLIVT--------------SSGDMTCALWDIETGQQTTTYTGHTGDVMSLSLSPDSRTFVSGACDASAKLWDI--RDGMCKQTFPGHESDINAVTFFPQGTAFCTGSDDATVKLYDIXADQELAQYSHDNIICGVTSVAFSKSGRLLMAGYDDFNVNVWDTLRVERAGVLAGHDNRVS--CLGVTDXGMAVXTGSWDSFLKIW 339 HSP 3 Score: 58.9214 bits (141), Expect = 9.551e-10 Identity = 52/208 (25.00%), Postives = 83/208 (39.90%), Query Frame = 0
Query: 219 TRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSK---AVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWD 423
T +S C+F D ++ T S C +W D E + H G+V ++SL+ S +W + FP E+ ++ V F P G + D + +L+D+ D+ L Q H V +AF G L G D VWD + L GH + C+ + G + TGS D+ ++W+
Sbjct: 143 TGYLSCCRF-LDDNLIVTSSGDMTCALW---DIETGQQTTTYTGHTGDVM-----SLSLSPDSRTFVSGACDASAKLWDIRDGMCKQTFPGHESDINAVTFFPQGTAFCTGSDDATVKLYDIXA-DQELAQYSHDNIICGVTSVAFSKSGRLLMAGYDDFNVNVWDTLRVERAGVLAGHDNRVSCLGVTDXGMAVXTGSWDSFLKIWN 340
BLAST of u4 u6 small nuclear ribonucleoprotein vs. SwissProt
Match: gi|20514971|sp|O43172.2|PRP4_HUMAN (RecName: Full=U4/U6 small nuclear ribonucleoprotein Prp4; AltName: Full=PRP4 homolog; Short=hPrp4; AltName: Full=U4/U6 snRNP 60 kDa protein; AltName: Full=WD splicing factor Prp4) HSP 1 Score: 514.612 bits (1324), Expect = 1.855e-178 Identity = 258/512 (50.39%), Postives = 353/512 (68.95%), Query Frame = 0
Query: 5 DDDLRYVKRQKIVHYGSLADATGAARTRQQEEDDEDDEDGPGGPNSNIEISHEYLP----LNRDERLGEKD-EILEEFERRKRARLINVSTDDAQVKKDLRALGRPICYFGEGPAERRHRLRDLLSQLGEDAIQKRQEAEDARAKEQREHDETTWYHEGPPALRDARQAMATYSLPRARARIGRQKVEAEMAESARMARNQEIQRNLKALDLEASQIADTRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLWTSK 511
DD + V ++ ++YGSL + + R++ E G G + IE + + +E + E+ E+L EFERRKRAR INVSTDD++VK LRALG PI FGEGPAERR RLR++LS +G DA++K ++ ++ K + E+ +T WYHEGP +L+ AR +A YSLPRA R+ ++ E+ E+ R ++ QE+ ++L++L+ SQI D RPIS+C FSP+SKMLAT WSGLCK+WSVPDC + TLRGHN ++G + F+P +TVSL NLASC + G V +WSL+S +P+ RV+RV +HP GR L YD SWRL+DLE ++E+LHQEGHS V+ IAF DG+LA TGG+D+FGRVWD+RTG+CIMFLEGHLK I +++S +GYHI TGS DN+C+VWDLR+R YTIPAH N+V+ V FE ++LT ++D TAK+W W + TL GH+ ++MG DI++DG +ATCSYDRTFKLW ++
Sbjct: 18 DDLVAPVVKKPHIYYGSLEE-----KERERLAKGESGILGKDGLKAGIEAGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQT-WYHEGPNSLKVARLWIANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPI-HGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE 522
BLAST of u4 u6 small nuclear ribonucleoprotein vs. SwissProt
Match: gi|81917168|sp|Q9DAW6.1|PRP4_MOUSE (RecName: Full=U4/U6 small nuclear ribonucleoprotein Prp4; AltName: Full=U4/U6 snRNP 60 kDa protein; AltName: Full=WD splicing factor Prp4) HSP 1 Score: 514.612 bits (1324), Expect = 1.957e-178 Identity = 258/512 (50.39%), Postives = 354/512 (69.14%), Query Frame = 0
Query: 5 DDDLRYVKRQKIVHYGSLADATGAARTRQQEEDDEDDEDGPGGPNSNIEISHEYLP----LNRDERLGEKD-EILEEFERRKRARLINVSTDDAQVKKDLRALGRPICYFGEGPAERRHRLRDLLSQLGEDAIQKRQEAEDARAKEQREHDETTWYHEGPPALRDARQAMATYSLPRARARIGRQKVEAEMAESARMARNQEIQRNLKALDLEASQIADTRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLWTSK 511
DD + V ++ ++YGSL + + R++ E G G + IE + + +E + E+ E+L EFERRKRAR INVSTDD++VK LRALG PI FGEGPAERR RLR++LS +G DA++K ++ ++ K + E+ +T WYHEGP +L+ AR +A YSLPRA R+ ++ E+ E+ R ++ QE+ ++L++L+ SQI D RPIS+C FSP+SKMLAT WSGLCK+WSVPDC + TLRGHN ++G + F+P +TVSL NLASC + G V +WSL+S +P+ RV+RV +HP GR L YD SWRL+DLE ++E+LHQEGHS V+ IAF DG+LA TGG+D+FGRVWD+RTG+CIMFLEGHLK I +++S +GYHI TGS DN+C+VWDLR+R YTIPAH N+V+ V FE +++LT ++D TAK+W W + TL GH+ ++MG DI++DG +ATCSYDRTFKLW ++
Sbjct: 17 DDLVAPVVKKPHIYYGSLEE-----KERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQT-WYHEGPNSLKVARLWIANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCSLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPI-HGDFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE 521
BLAST of u4 u6 small nuclear ribonucleoprotein vs. SwissProt
Match: gi|122142976|sp|Q3MHE2.1|PRP4_BOVIN (RecName: Full=U4/U6 small nuclear ribonucleoprotein Prp4; AltName: Full=U4/U6 snRNP 60 kDa protein; AltName: Full=WD splicing factor Prp4) HSP 1 Score: 513.842 bits (1322), Expect = 3.301e-178 Identity = 258/512 (50.39%), Postives = 353/512 (68.95%), Query Frame = 0
Query: 5 DDDLRYVKRQKIVHYGSLADATGAARTRQQEEDDEDDEDGPGGPNSNIEISHEYLP----LNRDERLGEKD-EILEEFERRKRARLINVSTDDAQVKKDLRALGRPICYFGEGPAERRHRLRDLLSQLGEDAIQKRQEAEDARAKEQREHDETTWYHEGPPALRDARQAMATYSLPRARARIGRQKVEAEMAESARMARNQEIQRNLKALDLEASQIADTRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLWTSK 511
DD + V ++ ++YGSL + + R++ E G G + IE + + +E + E+ E+L EFERRKRAR INVSTDD++VK LRALG PI FGEGPAERR RLR++LS +G DA++K ++ ++ K + E+ +T WYHEGP +L+ AR +A YSLPRA R+ ++ E+ E+ R ++ QE+ ++L++L+ SQI D RPIS+C FSP+SKMLAT WSGLCK+WSVPDC + TLRGHN ++G + F+P +TVSL NLASC + G V +WSL+S +P+ RV+RV +HP GR L YD SWRL+DLE ++E+LHQEGHS V+ IAF DG+LA TGG+D+FGRVWD+RTG+CIMFLEGHLK I +++S +GYHI TGS DN+C+VWDLR+R YTIPAH N+V+ V FE ++LT ++D TAK+W W + TL GH+ ++MG DI++DG +ATCSYDRTFKLW ++
Sbjct: 17 DDLVAPVVKKPHIYYGSLEE-----KERERLAKGESGLLGKEGLKAGIEAGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQT-WYHEGPHSLKVARLWIANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVTWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPI-HGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE 521
BLAST of u4 u6 small nuclear ribonucleoprotein vs. SwissProt
Match: gi|75070325|sp|Q5NVD0.1|PRP4_PONAB (RecName: Full=U4/U6 small nuclear ribonucleoprotein Prp4; AltName: Full=U4/U6 snRNP 60 kDa protein; AltName: Full=WD splicing factor Prp4) HSP 1 Score: 513.842 bits (1322), Expect = 3.761e-178 Identity = 258/512 (50.39%), Postives = 353/512 (68.95%), Query Frame = 0
Query: 5 DDDLRYVKRQKIVHYGSLADATGAARTRQQEEDDEDDEDGPGGPNSNIEISHEYLP----LNRDERLGEKD-EILEEFERRKRARLINVSTDDAQVKKDLRALGRPICYFGEGPAERRHRLRDLLSQLGEDAIQKRQEAEDARAKEQREHDETTWYHEGPPALRDARQAMATYSLPRARARIGRQKVEAEMAESARMARNQEIQRNLKALDLEASQIADTRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLWTSK 511
DD + V ++ ++YGSL + + R++ E G G + IE + + +E + E+ E+L EFERRKRAR INVSTDD++VK LRALG PI FGEGPAERR RLR++LS +G DA++K ++ ++ K + E+ +T WYHEGP +L+ AR +A YSLPRA R+ ++ E+ E+ R ++ QE+ ++L++L+ SQI D RPIS+C FSP+SKMLAT WSGLCK+WSVPDC + TLRGHN ++G + F+P +TVSL NLASC + G V +WSL+S +P+ RV+RV +HP GR L YD SWRL+DLE ++E+LHQEGHS V+ IAF DG+LA TGG+D+FGRVWD+RTG+CIMFLEGHLK I +++S +GYHI TGS DN+C+VWDLR+R YTIPAH N+V+ V FE ++LT ++D TAK+W W + TL GH+ ++MG DI++DG +ATCSYDRTFKLW ++
Sbjct: 17 DDLVAPVVKKPHIYYGSLEE-----KERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQT-WYHEGPNSLKVARLWIANYSLPRAMKRLEEARLHKEIPETTRASQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPI-HGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE 521
BLAST of u4 u6 small nuclear ribonucleoprotein vs. SwissProt
Match: gi|3123130|sp|O22212.1|PRP4L_ARATH (RecName: Full=U4/U6 small nuclear ribonucleoprotein PRP4-like protein; AltName: Full=Protein EMBRYO DEFECTIVE 2776; AltName: Full=Protein LACHESIS) HSP 1 Score: 322.398 bits (825), Expect = 5.985e-103 Identity = 185/469 (39.45%), Postives = 274/469 (58.42%), Query Frame = 0
Query: 51 NIEISHEYLPLNRDERLGEKDE-ILEEFERRKRARLINVSTDDAQVKKDLRALGRPICYFGEGPAERRHRLRDLLSQL---GE-DAIQKRQEAEDARAKEQREHD--ETTWYHEGPPALRDARQAMATYSLPRARARIGRQKVEAEMAESARMARNQEIQRNLKALDLEASQIADTRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVI-TLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYIL-TSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLWTS 510
+IEIS E +++ E+ E L++ ++RA + V T+D V+ LR LG PI FGE ERR RL LL++ G+ D + K E ED KE+ + + E ++ EGP LR+AR +A +S+ RA RI R K + + A + ++ K + L+ S D RP++ C FS D K+LAT S SG+ K+W +P I L+ H + +V F+P+ LA+ + +W + + L F R++RV FHP G++L +YD +WRL+D+ T ELL QEGHS++V+ IAFQ DGALA + G+DS RVWD+RTG+ I+ +GH+K + V++S +GYH+ +G DN CR+WDLR R Y IPAH N+VS V +E P+ Y L T+S+D +W+ + + + +L GH+S++ DI AD S +AT S+DRT KLWTS
Sbjct: 87 HIEISEE------SKQVRERQEKALQDLLVKRRAAAMAVPTNDKAVRDRLRRLGEPITLFGEQEMERRARLTQLLTRYDINGQLDKLVKDHE-EDVTPKEEVDDEVLEYPFFTEGPKELREARIEIAKFSVKRAAVRIQRAKRRRDDPDEDMDAETKWALKHAKHMALDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWEMPQVTNTIAVLKDHKERATDVVFSPVDDC--------LATASADRTAKLWKTDGTL-LQTFEGHLDRLARVAFHPSGKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYE--PQEGYFLATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLWTS 537
BLAST of u4 u6 small nuclear ribonucleoprotein vs. SwissProt
Match: gi|74698446|sp|Q9UTC7.1|YIDC_SCHPO (RecName: Full=Uncharacterized WD repeat-containing protein C227.12) HSP 1 Score: 289.656 bits (740), Expect = 2.528e-91 Identity = 157/436 (36.01%), Postives = 250/436 (57.34%), Query Frame = 0
Query: 76 EFERRKRARLINVSTDDAQVKKDLRALGRPICYFGEGPAERRHRLRDLLSQLGEDAIQKRQEAEDARAKEQ--REHDETTWYHEGPPALRDARQAMATYSLPRARARIGRQKVEAEMAESARMARNQEIQRNLKALDLEASQIADTRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGP-NLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
E + + R + + + +D++V++ LR G PI YFGE RR RL+ L+ I+K E ++ +Q E+ E Y +G L AR+ +A YSL +A+ R+ +++ +E+ + + +L+ +L SQI RPI+ +FS + A+GSW G KVW+ + EV RGH D + + + PL A S LA+ + V +W S PL+ ARV RV FHP G +L + ++D +WRL+D+ T ELL QEGHS+ + IA Q DG+L +GG D+ GR+WD+R+G+ IM L+ H++ IV + WS +GY + T S D++ ++WDLR+ + +TIPAH+++VS+V + +S + +I TS +DG KLW + ++ GH+ ++M D D F+++ YDRT KLW
Sbjct: 34 EQKEKDRIKALKIPYEDSKVREYLRRYGEPITYFGEDALARRQRLQQLM-------IEKSLEGDNPLDVDQGASENIEKETYVQGSHELLVARKKIALYSLEKAKLRLKKEREISEIPVPEIVLSGKSSIEHLQKAELMGSQIGGERPIAIVRFSNNGNHFASGSWGGQVKVWNSDNLSEVQLFRGHTDRVSGLDWYPLCQAWDADSEQLTLATGAADNTVCLWKASQSTPLLRLEGHLARVGRVAFHPSGDYLVSASFDTTWRLWDVHTGVELLMQEGHSEGIFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQLATSSADDTVKIWDLRKVSLAHTIPAHSSLVSDVRYIESGVNRFIATSGYDGCVKLWNPLNCSLIKSMVGHEEKVMSVDGYGD-RFISS-GYDRTIKLW 460 HSP 2 Score: 60.4622 bits (145), Expect = 1.646e-8 Identity = 40/182 (21.98%), Postives = 74/182 (40.66%), Query Frame = 0
Query: 340 LETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDW---------SMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLWTSKS 512
L+ + + Q G + + + F N+G +G +VW+ + GH + +DW + + TG+ DN+ +W + + H V V F P +Y++++SFD T +LW T + +GH + DGS V++ D ++W +S
Sbjct: 159 LQKAELMGSQIGGERPIAIVRFSNNGNHFASGSWGGQVKVWNSDNLSEVQLFRGHTDRVSGLDWYPLCQAWDADSEQLTLATGAADNTVCLWKASQSTPLLRLEGHLARVGRVAFH--PSGDYLVSASFDTTWRLWDVHTGVELLMQEGHSEGIFSIACQPDGSLVSSGGNDAIGRIWDLRS 338
BLAST of u4 u6 small nuclear ribonucleoprotein vs. SwissProt
Match: gi|130805|sp|P20053.1|PRP4_YEAST (RecName: Full=U4/U6 small nuclear ribonucleoprotein PRP4; AltName: Full=Pre-mRNA-processing protein 4) HSP 1 Score: 231.106 bits (588), Expect = 6.482e-69 Identity = 147/470 (31.28%), Postives = 249/470 (52.98%), Query Frame = 0
Query: 54 ISHEYLPLNRDERLGEKDE----ILEEF-ERRKRARLINVSTDDAQVKKDLRALGRPICYFGEGPAERRHRLRDLLSQLGEDAIQKRQEAEDARAKEQREHDETTWYHEGPPALRDARQAMATYSLPRARARIGRQKVEAEMAESAR---MARNQEIQRNLKALDLEASQIADTRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVI-TLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQP----LIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYT--IPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
I+ E LP++ + ++E IL++ R +A L + +D +V++ L L +P E +RR RL ++L + E ++ E+ +E E D+ ++ L AR+ + YSL R+R R+ ++++E + R ++R E+QR + L+L SQ+ T+PIS S D ++ATGSW+G +V + + + L H IG + ++P S + SC G + + + + L E R+S V++HP G+ + + ++D +WRL+D T ELL QEGH K V ++FQ DG+L C+GG+DS +WD+R+G +M L GH K I V WS +GY + TG D VWD+R+R++ I AH N+V+ V F K + +++ +D +++S TW M +L GH +++ DI+ + F+ + +DR+ KLW
Sbjct: 5 IALENLPVDLQHKGATQNESTADILKQLPHERLQAVLEKIPEEDLEVRRLLSILKKPEVVENEDVQQRRIRLAEIL-MVDEIDLENINNMENINGEEVDEEDDEDFFTPATSELIFARRFLINYSLERSRKRL-QKEMERHQKFNTRQELLSRRTELQR-MANLELAGSQLVSTKPISAVSLSTDDMVVATGSWAGDLQVLNSQTLQPLTQKLDSHVGKIGAIDWHP-------DSNNQMISCAEDGLIKNFQYSNEEGGLRLLGDLVGHERRISDVKYHPSGKFIGSASHDMTWRLWDASTHQELLLQEGHDKGVFSLSFQCDGSLVCSGGMDSLSMLWDIRSGSKVMTLAGHSKPIYTVAWSPNGYQVATGGGDGIINVWDIRKRDEGQLNQILAHRNIVTQVRFSKEDGGKKLVSCGYDNLINVYSSDTWLKMGSLAGHTDKIISLDISNNSHFLVSGGWDRSIKLW 464 HSP 2 Score: 60.077 bits (144), Expect = 2.174e-8 Identity = 37/160 (23.12%), Postives = 72/160 (45.00%), Query Frame = 0
Query: 227 FSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESS-----QPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWD 381
F D ++ +G L +W + +V+TL GH+ P+ TV+ + +G +A+ G +NVW + ++A N+ +V R G+ L +C YDN ++ +T ++ GH+ + + N+ +GG D ++W+
Sbjct: 315 FQCDGSLVCSGGMDSLSMLWDIRSGSKVMTLAGHS--------KPIYTVAWSPNGYQVATGGGDGIINVWDIRKRDEGQLNQILAHRNIVTQV-RFSKEDGGKKLVSCGYDNLINVYSSDTWLKMGSLAGHTDKIISLDISNNSHFLVSGGWDRSIKLWN 465
BLAST of u4 u6 small nuclear ribonucleoprotein vs. SwissProt
Match: gi|20532311|sp|Q8YRI1.1|YY46_NOSS1 (RecName: Full=Uncharacterized WD repeat-containing protein alr3466) HSP 1 Score: 158.303 bits (399), Expect = 6.650e-40 Identity = 89/286 (31.12%), Postives = 150/286 (52.45%), Query Frame = 0
Query: 227 FSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLWTSKS 512
FSPD LA+GS ++W + + + L+GH + +V FNP G LAS S V +W + SS+ L F + V+ V F+P G LA+ + D + RL+D+ + L +GH+ V+ +AF DG++ +G D R+W++ + +C+ +GH + V +S DG + +GS D + R+W + YT H N V +V+F SP + + S D T +LW+ + + + TL+GH++ + + DG+ +A+ S D+T +LW S
Sbjct: 1166 FSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNP--------DGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIF--SPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISS 1441 HSP 2 Score: 154.836 bits (390), Expect = 7.912e-39 Identity = 89/282 (31.56%), Postives = 142/282 (50.35%), Query Frame = 0
Query: 227 FSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
FSPD K+ ATG G+ + W +E++T +GHN + +V F + G LAS V +W + S Q L F +RV V F P LA+ + D + RL+D+ + + L +GH+ V+ +AF DG++ TG D R+WD+ + QC +GH + V +S DG + +GS D + R+WD+ N YT+ H + V +VVF SP + + D +LW + + TL+G+ S + + +G +A S D+ +LW
Sbjct: 872 FSPDGKLFATGDSGGIVRFWEAATGKELLTCKGHNSWVNSVGF--------SQDGKMLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVF--SPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLW 1143 HSP 3 Score: 150.984 bits (380), Expect = 1.791e-37 Identity = 89/286 (31.12%), Postives = 144/286 (50.35%), Query Frame = 0
Query: 227 FSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLWTSKS 512
F+PD LA+GS ++W + + + T +GH + +V FNP G LAS S V +W + SS+ L F V+ V F+P G LA+ + D + RL+++ + L +GH+ V + F DG + +G D R+W + +G+C+ GH + V +S DG + +GS D + R+W + YT+ HNN V ++VF SP + + S D T +LW + + + TL GH + + ++DG +A+ S D T KLW K+
Sbjct: 1208 FNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNP--------DGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVF--SPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETIKLWDVKT 1483 HSP 4 Score: 148.673 bits (374), Expect = 1.137e-36 Identity = 88/282 (31.21%), Postives = 142/282 (50.35%), Query Frame = 0
Query: 227 FSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
FSP+S MLA+GS ++W + E + +GH + +V FN G LA+ V +W + SSQ F + V V F G LA+ + D + RL+D+ + + L +GH+ V + F DGA+ +GG D R+WD+ +G C+ L+G+ + + +S +G + GS+D R+WD+ + YT+ H N V+ V F SP + + S D T +LW + + + L+GH S + DGS +A+ S D+T +LW
Sbjct: 956 FSPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFN--------LDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAF--SPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLW 1227 HSP 5 Score: 143.28 bits (360), Expect = 6.397e-35 Identity = 83/294 (28.23%), Postives = 150/294 (51.02%), Query Frame = 0
Query: 219 TRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLWTSKS 512
T + + FSP+ LA GS + ++W + + + TL+GH + + V F+P G LAS V +W + SS+ L + V+ V F+P G LA+ + D + RL+++ + L +GH+ V+ + F DG++ +G D R+WD+ + +C+ +GH + V ++ DG + +GS D + R+W++ +T H + VS+V F SP + + S D T +LW+ + + + T GH + + + DG+ +A+ S D+T +LW+ S
Sbjct: 1116 TSWVRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSP--------DGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTF--SPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISS 1399 HSP 6 Score: 139.043 bits (349), Expect = 1.458e-33 Identity = 84/282 (29.79%), Postives = 140/282 (49.65%), Query Frame = 0
Query: 227 FSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
FS D MLA+GS ++W + + TL+GH + +V F+P G LAS V +W + S L + V + F P G LA + D RL+D+ ++ L +GH+ V+ +AF DGA +G D R+WD+ + +C+ L+GH + V ++ DG + +GS+D + R+W++ T H + V++VVF +P + + S D T +LW + + + T +GH + + DGS +A+ S D+T +LW
Sbjct: 1040 FSSDGAMLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSP--------DGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVF--NPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLW 1311 HSP 7 Score: 130.954 bits (328), Expect = 7.116e-31 Identity = 81/252 (32.14%), Postives = 128/252 (50.79%), Query Frame = 0
Query: 227 FSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLK 478
F+PD MLA+GS ++W + + + T +GH + + +V FNP G LAS V +W + SS+ L F + VS V F P G LA+ + D + RL+ + + + L GH+ V + F DGA+ +G D R+W + +G+C+ L+GH + + +S DG + +GS D + R+W++ YT+ H N V +V F S + + S D T KLW KT + + TLK
Sbjct: 1250 FNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNP--------DGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAF--SSDGLILASGSDDETIKLWDVKTGECIKTLK 1491 HSP 8 Score: 117.472 bits (293), Expect = 1.750e-26 Identity = 67/240 (27.92%), Postives = 118/240 (49.17%), Query Frame = 0
Query: 269 FNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
+ TV+ + G A+ DS G V W + + L+ + V+ V F G+ LA+ + D + RL+D+ + L +GH+ V + F + + +G D R+WD+ +G+C+ +GH + V +++DG + TGS D + R+WD+ Y H + V +VVF S + + S D T +LW + + TL+GH S + + DG+ +A+ D+ +LW
Sbjct: 864 LGSVLTVAFSPDGKLFATGDSGGIVRFWEAATGKELLTCKGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVF--SSDGAMLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLW 1101 HSP 9 Score: 102.064 bits (253), Expect = 1.805e-21 Identity = 60/210 (28.57%), Postives = 99/210 (47.14%), Query Frame = 0
Query: 299 ESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
E++ F + V V F P G+ A R ++ T ELL +GH+ V+ + F DG + +G D R+WD+ +GQC+ +GH + V +S + + +GS+D + R+WD+ Y H V +V F + T S D T +LW + Q +GH S + ++DG+ +A+ S D+T +LW
Sbjct: 852 EANLAYSVFTKILGSVLTVAFSPDGKLFATGDSGGIVRFWEAATGKELLTCKGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLD--GSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLW 1059 HSP 10 Score: 97.0561 bits (240), Expect = 6.944e-20 Identity = 56/174 (32.18%), Postives = 89/174 (51.15%), Query Frame = 0
Query: 219 TRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLE 392
T +S FSPD MLA+GS ++WS+ E + T GH + +G+V F+P G LAS V +WS+ S + L V + F P G LA+ + D + RL+++ + + L GH +V +AF +DG + +G D ++WD++TG+CI L+
Sbjct: 1326 TSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSP--------DGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETIKLWDVKTGECIKTLK 1491
BLAST of u4 u6 small nuclear ribonucleoprotein vs. SwissProt
Match: gi|152031728|sp|Q1LV15.2|DAW1_DANRE (RecName: Full=Dynein assembly factor with WDR repeat domains 1; AltName: Full=Outer row dynein assembly protein 16 homolog; AltName: Full=WD repeat-containing protein 69) HSP 1 Score: 137.117 bits (344), Expect = 2.588e-34 Identity = 85/296 (28.72%), Postives = 141/296 (47.64%), Query Frame = 0
Query: 217 ADTRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLWTSKS 512
A P++ F+ TGS+ CK+W EE+ TL GH + + + FN G +A+ +WS E+ + F A + + F+P +A + D + +L+D+E+ +E+ GH + + F G TG D +WD+ +G+ + L GH I CV ++ D I T S D SC+VWD T+ HN+ V +V F + + I T+S DGT++++++ T+Q + L+GH + A GS V T S D+T ++W K+
Sbjct: 90 AHILPLTNVAFNKSGSCFITGSYDRTCKIWDTASGEELHTLEGHRNVVYAIAFNN-------PYGDKVATGSFDKTCKLWSAETGKCFYTFRGHTAEIVCLAFNPQSTLVATGSMDTTAKLWDVESGEEVSTLAGHFAEIISLCFNTTGDRLVTGSFDHTAILWDVPSGRKVHVLSGHRGEISCVQFNWDCSLIATASLDKSCKVWDAEGGQCLATLLGHNDEVLDVCFNYT--GQLIATASADGTSRVFSTDTFQCLCQLEGHKGEISKVCFNAQGSRVLTASVDKTSRVWCVKT 376 HSP 2 Score: 122.479 bits (306), Expect = 3.681e-29 Identity = 80/281 (28.47%), Postives = 134/281 (47.69%), Query Frame = 0
Query: 228 SPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
+P +ATGS+ CK+WS + T RGH I + FNP +T L A+G S D+ ++ W +ES + + A + + F+ G L ++D++ L+D+ + ++ GH + C+ F D +L T +D +VWD GQC+ L GH ++ V ++ G I T S D + RV+ + H +S V F + + +LT+S D T+++W KT + L+GH + C +G + T S D T ++W
Sbjct: 144 NPYGDKVATGSFDKTCKLWSAETGKCFYTFRGHTAEIVCLAFNPQST--LVATG----SMDTTAKL--WDVESGEEVSTLAGHFAEIISLCFNTTGDRLVTGSFDHTAILWDVPSGRKVHVLSGHRGEISCVQFNWDCSLIATASLDKSCKVWDAEGGQCLATLLGHNDEVLDVCFNYTGQLIATASADGTSRVFSTDTFQCLCQLEGHKGEISKVCF--NAQGSRVLTASVDKTSRVWCVKTGACLQVLEGHSDEIFSCAFNYEGDTIITGSKDNTCRIW 414 HSP 3 Score: 102.064 bits (253), Expect = 3.152e-22 Identity = 69/201 (34.33%), Postives = 92/201 (45.77%), Query Frame = 0
Query: 222 ISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVW 422
IS C F+ L TGS+ +W VP +V L GH I V FN SL A+ SC VW E Q L V V F+ G+ +A + D + R+F +T L EGH + + F G+ T VD RVW ++TG C+ LEGH I ++ +G IITGS DN+CR+W
Sbjct: 223 ISLC-FNTTGDRLVTGSFDHTAILWDVPSGRKVHVLSGHRGEISCVQFN--WDCSLIATASLDKSC------KVWDAEGGQCLATLLGHNDEVLDVCFNYTGQLIATASADGTSRVFSTDTFQCLCQLEGHKGEISKVCFNAQGSRVLTASVDKTSRVWCVKTGACLQVLEGHSDEIFSCAFNYEGDTIITGSKDNTCRIW 414 HSP 4 Score: 94.3597 bits (233), Expect = 1.333e-19 Identity = 70/248 (28.23%), Postives = 110/248 (44.35%), Query Frame = 0
Query: 219 TRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLW 466
T I F+P S ++ATGS K+W V EEV TL GH I ++ FN +G L + +W + S + + +S VQF+ +A + D S +++D E L GH+ V + F G L T D RV+ T QC+ LEGH I V ++ G ++T S D + RVW ++ + H++ + + F + + I+T S D T ++W
Sbjct: 177 TAEIVCLAFNPQSTLVATGSMDTTAKLWDVESGEEVSTLAGHFAEIISLCFN--------TTGDRLVTGSFDHTAILWDVPSGRKVHVLSGHRGEISCVQFNWDCSLIATASLDKSCKVWDAEGGQCLATLLGHNDEVLDVCFNYTGQLIATASADGTSRVFSTDTFQCLCQLEGHKGEISKVCFNAQGSRVLTASVDKTSRVWCVKTGACLQVLEGHSDEIFSCAF--NYEGDTIITGSKDNTCRIW 414 HSP 5 Score: 78.5666 bits (192), Expect = 2.039e-14 Identity = 41/122 (33.61%), Postives = 66/122 (54.10%), Query Frame = 0
Query: 391 LEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLWTSKS 512
L+ H+ + V ++ G ITGS D +C++WD + +T+ H NVV + F +P + + T SFD T KLW+++T + T +GH + ++ + VAT S D T KLW +S
Sbjct: 88 LQAHILPLTNVAFNKSGSCFITGSYDRTCKIWDTASGEELHTLEGHRNVVYAIAF-NNPYGDKVATGSFDKTCKLWSAETGKCFYTFRGHTAEIVCLAFNPQSTLVATGSMDTTAKLWDVES 208
BLAST of u4 u6 small nuclear ribonucleoprotein vs. SwissProt
Match: gi|20140995|sp|Q8YTC2.1|Y2800_NOSS1 (RecName: Full=Uncharacterized WD repeat-containing protein alr2800) HSP 1 Score: 140.969 bits (354), Expect = 3.967e-34 Identity = 84/286 (29.37%), Postives = 141/286 (49.30%), Query Frame = 0
Query: 227 FSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLWTSKS 512
FSP+ ++LAT +VW V + ++ RGH++ + V F+P G LASC + V +WS+ + E V V FHP G LA+ + D + +L+D++ L GH+ V C+AF DG + D ++WD+ G+C+ L+ H + V +S DG + +GS D + ++W+ T H N V ++ + SP S+ +++ S D T KLW +T + TL GH + + + DG +A S D++ +LW ++
Sbjct: 650 FSPEGQLLATCDTDCHVRVWEVKSGKLLLICRGHSNWVRFVVFSP--------DGEILASCGADENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAY--SPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRT 925 HSP 2 Score: 132.109 bits (331), Expect = 3.057e-31 Identity = 86/298 (28.86%), Postives = 145/298 (48.66%), Query Frame = 0
Query: 214 SQIADTRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVI---TLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
+ I T + +SPDSK+L +GS K+W DC+ I TL GH + + +V F+P G LA V +W+ + Q L A+ V F P + LA+ + D + +L+D +T + EGH+ ++ IAF D + DS R+W++ TGQC L H + V + G I TGS D + ++W++ T+ H++ + + + SP + + ++S D + +LW T + + L+GH +R+ + +G +ATCS D+T K+W
Sbjct: 847 TYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLW---DCQTHICIKTLHGHTNEVCSVAFSP--------DGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAW--SPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIW 1131 HSP 3 Score: 130.568 bits (327), Expect = 1.021e-30 Identity = 82/286 (28.67%), Postives = 136/286 (47.55%), Query Frame = 0
Query: 227 FSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLWTSKS 512
FSPD ++LA+GS K+W + + +L GH D I + F+P LAS + V +W++ + Q V V FHP G+ +A + D + +L+++ T L HS + +A+ DG L + D R+WD TG+C+ L GH + +S +G I T STD + ++WD ++ T+ H N V ++ F SP + + ++S D T ++W T + GH + + DG VA+ S D+T ++W K+
Sbjct: 944 FSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSP--------DSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAF--SPDGKILASASHDQTVRIWDVNTGKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRIWNVKT 1219 HSP 4 Score: 123.25 bits (308), Expect = 2.121e-28 Identity = 80/282 (28.37%), Postives = 131/282 (46.45%), Query Frame = 0
Query: 227 FSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
FSPD ++LA+ K+WSV D + TL GH + +V F+P G LAS + +W ++ L V V F P G LA+ A D++ +L+D+ L + H+ V +AF DG +G D ++W+ TG+C+ GH + + +S D +++GS D + ++WD + T+ H N V +V F SP + + S D + +LW +T Q + G+ + + D +A+ S D+T KLW
Sbjct: 692 FSPDGEILASCGADENVKLWSVRDGVCIKTLTGHEHEVFSVAFHP--------DGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAF--SPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLW 963 HSP 5 Score: 113.235 bits (282), Expect = 4.494e-25 Identity = 87/325 (26.77%), Postives = 139/325 (42.77%), Query Frame = 0
Query: 227 FSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDG-ALACTGGVDSFGRVWDMRTGQC------------------------------------------IMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
FSPD LA+ + K+W V + + TL+ H + +V F +A G LAS + +W+ + + L + V + + P + L + + D + +L+D +T + GH+ V +AF DG LAC +D R+W+ RTGQC I LEGH I + +S D + + STD+S R+W++ + H + V VVF P+ + I T S D T KLW T Q + TL H +++G + DG +A+ S D++ +LW
Sbjct: 776 FSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAF--------SADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVS-LDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFH--PQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLW 1089 HSP 6 Score: 110.538 bits (275), Expect = 3.278e-24 Identity = 67/241 (27.80%), Postives = 115/241 (47.72%), Query Frame = 0
Query: 268 TFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
T + + + + G LA+CD+ V VW ++S + L+ V V F P G LA+C D + +L+ + + GH V +AF DG + D ++WD++ G C+ L GH + CV +S DG + + + D++ ++WD+ + T+ +H V +V F S + + + S D T K+W T + + T GH + + + D + + S DRT KLW
Sbjct: 641 TLGNILSAAFSPEGQLLATCDTDCHVRVWEVKSGKLLLICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAF--SADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLW 879 HSP 7 Score: 79.7221 bits (195), Expect = 2.146e-14 Identity = 45/165 (27.27%), Postives = 82/165 (49.70%), Query Frame = 0
Query: 227 FSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFL 391
+SPD ++LA+ S ++W V LRGH++ + + F+P +G +A+C + V +W + + L V + F P G+ LA+ ++D + R++D+ T GH+ V +AF DG + +G D R+W+++TG+C+ L
Sbjct: 1070 WSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSP--------NGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRIWNVKTGECLQIL 1226
BLAST of u4 u6 small nuclear ribonucleoprotein vs. nr
Match: gi|1325285243|ref|XP_023327336.1| (U4/U6 small nuclear ribonucleoprotein Prp4-like isoform X1 [Eurytemora affinis]) HSP 1 Score: 617.076 bits (1590), Expect = 0.000e+0 Identity = 290/508 (57.09%), Postives = 391/508 (76.97%), Query Frame = 0
Query: 1 MSDEDDDLRYVKRQKIVHYGSLADATGAARTRQQEEDDEDDEDGPGGPNSNIEISHEYLPLNRDERLGEKDEILEEFERRKRARLINVSTDDAQVKKDLRALGRPICYFGEGPAERRHRLRDLLSQLGEDAIQKRQEAEDARAKEQREHDETTWYHEGPPALRDARQAMATYSLPRARARIGRQKVEAEMAESARMARNQEIQRNLKALDLEASQIADTRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
MSD D+D++Y+KR+K+VH+G+L++ G + NI+IS EY+ +++D +K E+LEEFERR+R R I VST+D++VK +LR LG PIC FGEGPA+RR+RLR+L+ ++G D +QK++ + E+++ DE+TWYHEGP +L+ AR+ +A+YS+PRA AR+ R + E+++ E +MA+ QEIQ+ +K+LD+EASQI DTRP+SWCQFSPDSKML TGSWSG+CK+WSVPDC+E+ LRGH H+G+V FNP +T+ L + PNLASC + G V +WSL+S +P+ +ARVSR +HP GR L +DNSWRL+DLE E+ HQEGHSK V+C+AFQ DG+L C+GG+DSFGRVWD+RTGQCIMFLEGHLKGI VDWS +GY+I+T S DNSC++WDLR+RN EYTIPAH +VSNV FEK+ EY+++SS+DGTAK+WASKTW +ATL+GHD++L GCD++ DGS +ATCS+DRTFKLW
Sbjct: 8 MSD-DEDIQYIKRKKVVHFGTLSENRGESSVE------------------NIQISSEYIEMDKDVLSSDKQEMLEEFERRRRVRAITVSTNDSEVKSELRLLGEPICLFGEGPADRRNRLRELIGKIGADVLQKKKM--QSEVVEEKKDDESTWYHEGPESLKIAREWLASYSIPRAVARLSRLREESDLPEKTKMAKKQEIQKKMKSLDVEASQIVDTRPVSWCQFSPDSKMLVTGSWSGVCKLWSVPDCKEIRPLRGHTTHVGSVVFNPKSTLGLDPAEPNLASCAADGSVKLWSLDSEEPVADIEGHDARVSRCAYHPSGRFLGTAVWDNSWRLWDLEQLTEVQHQEGHSKEVYCLAFQQDGSLCCSGGLDSFGRVWDLRTGQCIMFLEGHLKGITGVDWSPNGYNIVTCSQDNSCKIWDLRKRNIEYTIPAHTKLVSNVRFEKN-TGEYLVSSSYDGTAKVWASKTWLPLATLRGHDNKLSGCDVSPDGSMIATCSFDRTFKLW 493 HSP 2 Score: 78.5666 bits (192), Expect = 7.675e-12 Identity = 55/205 (26.83%), Postives = 90/205 (43.90%), Query Frame = 0
Query: 222 ISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQ-NDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLR 425
+S C + P + L T W ++W + EV GH+ + + F SL SG DS G VW L + Q ++ ++ V + P G ++ C+ DNS +++DL R+ H+K V + F+ N G + D +VW +T + L GH + D S DG I T S D + ++W+ +
Sbjct: 300 VSRCAYHPSGRFLGTAVWDNSWRLWDLEQLTEVQHQEGHSKEVYCLAFQQDG--SLCCSG----GLDSFG--RVWDLRTGQCIMFLEGHLKGITGVDWSPNGYNIVTCSQDNSCKIWDLRKRNIEYTIPAHTKLVSNVRFEKNTGEYLVSSSYDGTAKVWASKTWLPLATLRGHDNKLSGCDVSPDGSMIATCSFDRTFKLWNFQ 496
BLAST of u4 u6 small nuclear ribonucleoprotein vs. nr
Match: gi|1325285245|ref|XP_023327337.1| (U4/U6 small nuclear ribonucleoprotein Prp4-like isoform X2 [Eurytemora affinis]) HSP 1 Score: 582.793 bits (1501), Expect = 0.000e+0 Identity = 270/448 (60.27%), Postives = 358/448 (79.91%), Query Frame = 0
Query: 61 LNRDERLGEKDEILEEFERRKRARLINVSTDDAQVKKDLRALGRPICYFGEGPAERRHRLRDLLSQLGEDAIQKRQEAEDARAKEQREHDETTWYHEGPPALRDARQAMATYSLPRARARIGRQKVEAEMAESARMARNQEIQRNLKALDLEASQIADTRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
+++D +K E+LEEFERR+R R I VST+D++VK +LR LG PIC FGEGPA+RR+RLR+L+ ++G D +QK++ + E+++ DE+TWYHEGP +L+ AR+ +A+YS+PRA AR+ R + E+++ E +MA+ QEIQ+ +K+LD+EASQI DTRP+SWCQFSPDSKML TGSWSG+CK+WSVPDC+E+ LRGH H+G+V FNP +T+ L + PNLASC + G V +WSL+S +P+ +ARVSR +HP GR L +DNSWRL+DLE E+ HQEGHSK V+C+AFQ DG+L C+GG+DSFGRVWD+RTGQCIMFLEGHLKGI VDWS +GY+I+T S DNSC++WDLR+RN EYTIPAH +VSNV FEK+ EY+++SS+DGTAK+WASKTW +ATL+GHD++L GCD++ DGS +ATCS+DRTFKLW
Sbjct: 1 MDKDVLSSDKQEMLEEFERRRRVRAITVSTNDSEVKSELRLLGEPICLFGEGPADRRNRLRELIGKIGADVLQKKKM--QSEVVEEKKDDESTWYHEGPESLKIAREWLASYSIPRAVARLSRLREESDLPEKTKMAKKQEIQKKMKSLDVEASQIVDTRPVSWCQFSPDSKMLVTGSWSGVCKLWSVPDCKEIRPLRGHTTHVGSVVFNPKSTLGLDPAEPNLASCAADGSVKLWSLDSEEPVADIEGHDARVSRCAYHPSGRFLGTAVWDNSWRLWDLEQLTEVQHQEGHSKEVYCLAFQQDGSLCCSGGLDSFGRVWDLRTGQCIMFLEGHLKGITGVDWSPNGYNIVTCSQDNSCKIWDLRKRNIEYTIPAHTKLVSNVRFEKN-TGEYLVSSSYDGTAKVWASKTWLPLATLRGHDNKLSGCDVSPDGSMIATCSFDRTFKLW 445 HSP 2 Score: 77.7962 bits (190), Expect = 1.285e-11 Identity = 55/205 (26.83%), Postives = 90/205 (43.90%), Query Frame = 0
Query: 222 ISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFPNLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQ-NDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLR 425
+S C + P + L T W ++W + EV GH+ + + F SL SG DS G VW L + Q ++ ++ V + P G ++ C+ DNS +++DL R+ H+K V + F+ N G + D +VW +T + L GH + D S DG I T S D + ++W+ +
Sbjct: 252 VSRCAYHPSGRFLGTAVWDNSWRLWDLEQLTEVQHQEGHSKEVYCLAFQQDG--SLCCSG----GLDSFG--RVWDLRTGQCIMFLEGHLKGITGVDWSPNGYNIVTCSQDNSCKIWDLRKRNIEYTIPAHTKLVSNVRFEKNTGEYLVSSSYDGTAKVWASKTWLPLATLRGHDNKLSGCDVSPDGSMIATCSFDRTFKLWNFQ 448
BLAST of u4 u6 small nuclear ribonucleoprotein vs. nr
Match: gi|1233205205|ref|XP_022201719.1| (U4/U6 small nuclear ribonucleoprotein Prp4 [Nilaparvata lugens]) HSP 1 Score: 571.237 bits (1471), Expect = 0.000e+0 Identity = 294/534 (55.06%), Postives = 383/534 (71.72%), Query Frame = 0
Query: 1 MSDEDDDLRYVKRQKIVHYGSLAD------ATGAARTRQQEEDDEDDEDGPGGPNS----NIEISHEYLPLNRDERLGEKDEILEEFERRKRARLINVSTDDAQVKKDLRALGRPICYFGEGPAERRHRLRDLLSQLGEDAIQKRQEAEDARAKEQREHDETTWYHEGPPALRDARQAMATYSLPRARARIGRQKVEAEMAESARMARNQEIQRNLKALDLEASQIADTRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAF----PNLEARVSRVQFHPMGRHLAACAYDNSWRL------------FDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
MSD D+++ YVK+QK +HYGSL + A AA Q E+ + P G S N+ EY+ L DE +K +LEEFERRK+AR +NVSTDD++VK++LR LG PIC FGEGPAERR RLR+LLS+LGEDAIQ++QE E+ R +++++ ETTWYHEGP +L+DAR +A YSLPRA+ R+ + E ++AE+ AR QE+Q++L L + SQI DTRP+S+C FSPDSKMLAT SWSGLCK+WS+P+CE + T +GHN ++G +TFNPLA +S S LASC G V +W+L S +PL PN RVSR+ FHP GR L C +D+SWRL +DL E+LHQEGH+K V+C++FQ DGALA +GG+DSFGRVWD+RTG+CIMFLEGHLK I +D+S DGYHI TGS DN+CRVWDLRRRN YTIPAH N++S++ +++S +++TSS+D TAK+W+SKTWQ + TL GHD ++MG DI+ D F+ATCSYDRTFKLW
Sbjct: 1 MSD-DEEVLYVKKQKTIHYGSLEEQERQRLAAIAASGGSQLEESSNSPGSPAGDASGMPGNVHTHDEYMELE-DEISRDKQALLEEFERRKKARQVNVSTDDSEVKRNLRQLGEPICLFGEGPAERRSRLRELLSRLGEDAIQRKQEEEEERLQQEKDQ-ETTWYHEGPESLKDARLWIANYSLPRAKKRLEAARQEVQLAEATLTARRQELQKHLTGLSIYCSQIGDTRPLSYCNFSPDSKMLATASWSGLCKLWSIPNCELLKTFKGHNCNVGCITFNPLA-LSDQESICALASCAVDGSVKLWTLNSEEPLADVEGHAPN---RVSRIAFHPSGRFLGTCCFDSSWRLWDLAVGQGGGGVWDLAVGQEVLHQEGHTKPVYCLSFQQDGALAASGGLDSFGRVWDLRTGRCIMFLEGHLKSIYGIDFSPDGYHIATGSEDNACRVWDLRRRNCVYTIPAHMNLISDIKYQRSG-GHFLITSSYDNTAKVWSSKTWQPLKTLSGHDGKVMGLDISPDSKFIATCSYDRTFKLW 526
BLAST of u4 u6 small nuclear ribonucleoprotein vs. nr
Match: gi|1080037275|ref|XP_018579062.1| (U4/U6 small nuclear ribonucleoprotein Prp4 [Anoplophora glabripennis] >gi|1080037277|ref|XP_018579063.1| U4/U6 small nuclear ribonucleoprotein Prp4 [Anoplophora glabripennis]) HSP 1 Score: 570.852 bits (1470), Expect = 0.000e+0 Identity = 274/510 (53.73%), Postives = 371/510 (72.75%), Query Frame = 0
Query: 1 MSDEDDDLRYVKRQKIVHYGSLADATGAARTRQQEEDDEDDEDGPGGPNSNIEISHEYLPLNRDERLG-EKDEILEEFERRKRARLINVSTDDAQVKKDLRALGRPICYFGEGPAERRHRLRDLLSQLGEDAIQKRQEAEDARAKEQREHDETTWYHEGPPALRDARQAMATYSLPRARARIGRQKVEAEMAESARMARNQEIQRNLKALDLEASQIADTRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFP-NLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
MSDED+ ++Y+K+QK +HYGSL DA AR Q E D E P + S EY+ L +E + +K +LEEFERR++AR INVSTDDA+VK++LR LG PIC FGEGPA+RR RLRD+LS++GEDA+ +R EAE+ R +++ ETTWYHEGP +LR AR +A YSLPRA+ R+ + ++ + + A+ QE+Q+ L+A+ + +SQ+ DTRPIS+CQFSP+S +LAT SWSGLCKVWSVPDCE TL+GH ++G + F+P AT+S + N+ASC S G V +W +S +P+ ++ RVSR+ FHP GR L C YDNSWRL+DL+ E+LHQEGH K V+CI+FQ DG++ TGG+DSFGRVWD+RTG+CIMF+EGHLK I+ +D+S +GYHI T S DN C++WDLR+R+ YTIPAH N++S+V F+K S Y++T+S+D T KLW ++TWQ + TL GHD ++M DI+ D ++AT SYDRTFK W
Sbjct: 1 MSDEDE-VQYIKKQKTIHYGSLEDAE-RARLEAQAETSNDSEPPPTSTTPQVAESSEYMEL--EEAMSRDKQALLEEFERRRKARSINVSTDDAEVKRNLRQLGEPICLFGEGPADRRCRLRDILSRIGEDAVIRR-EAEEERKLFEKDQ-ETTWYHEGPESLRIARLWIAEYSLPRAKERLEEARRIIDIPAATKTAKTQELQKKLQAMSIYSSQVGDTRPISFCQFSPNSSLLATASWSGLCKVWSVPDCELKQTLKGHTCNVGAIIFHPKATISQGENICNMASCASDGSVKLWDFKSEEPIADIEGHMPHRVSRLGFHPSGRFLGTCCYDNSWRLWDLQQCTEVLHQEGHVKPVYCISFQTDGSVCATGGLDSFGRVWDLRTGRCIMFMEGHLKAILGIDFSSNGYHIATASEDNCCKIWDLRKRSILYTIPAHTNLISDVKFQKENGS-YLVTASYDNTVKLWTTRTWQPLKTLSGHDGKIMSVDISGDNQYIATSSYDRTFKFW 503
BLAST of u4 u6 small nuclear ribonucleoprotein vs. nr
Match: gi|242023811|ref|XP_002432324.1| (U4/U6 small nuclear ribonucleoprotein Prp4, putative [Pediculus humanus corporis] >gi|212517747|gb|EEB19586.1| U4/U6 small nuclear ribonucleoprotein Prp4, putative [Pediculus humanus corporis]) HSP 1 Score: 570.466 bits (1469), Expect = 0.000e+0 Identity = 274/509 (53.83%), Postives = 375/509 (73.67%), Query Frame = 0
Query: 1 MSDEDDDLRYVKRQKIVHYGSLADATGAARTRQQEEDDEDDEDGPGGPNSNIEISHEYLPLNRDERLGEKDEILEEFERRKRARLINVSTDDAQVKKDLRALGRPICYFGEGPAERRHRLRDLLSQLGEDAIQKRQEAEDARAKEQREHDETTWYHEGPPALRDARQAMATYSLPRARARIGRQKVEAEMAESARMARNQEIQRNLKALDLEASQIADTRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFP-NLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
MSD D+++ YVKR K +HYGSL + A ++D D+D + NI IS EY+ + DE ++ +LEEFERRKRAR I+VSTDD QVKK+LR LG PIC FGEGPA+RR RLRDLLS+LGEDAIQ++Q E+ R +++++ E+TWYHEGP ALR AR +A YSLPRA+ RI K+ A+ ++++R AR E+ + ++A+ + ASQI DTRPIS+CQFSP+S+ LAT SWSGLCK+WSVP CE + T +GHN ++G + F+P+AT+ + +LASC S G V +WSLE+ +P+ + RVS++ FHP GR L C YD+SWRL+DL E+LHQEGH K VHC++FQNDG++A +GG+D+F RVWD+RTG+CIMF+EGHLK I +D+S D Y + TGS DN+C++WDLR+R YTIPAH N++S+ F+KS +++T+S+D TAK+W++KTWQ + TL GHD+++M D++ D F+AT SYDRTFKLW
Sbjct: 1 MSD-DEEIIYVKRPKKIHYGSLEEQERAKLLESLKDDA--DKDAGSLLSGNIHISDEYMDIE-DEVSKDRAALLEEFERRKRARQIHVSTDDDQVKKNLRQLGEPICLFGEGPADRRSRLRDLLSKLGEDAIQRKQVEEETRIQQEKDQ-ESTWYHEGPMALRTARLWIAVYSLPRAQKRIEEAKMRAQQSDTSRTARRNEVHKKIQAVTIFASQIGDTRPISFCQFSPNSEYLATASWSGLCKLWSVPKCELIKTYKGHNCNVGAIVFHPMATLEERNNSCSLASCASDGTVKLWSLENDEPIKDIEGHAPYRVSKLAFHPSGRFLGTCCYDSSWRLWDLSIGQEVLHQEGHCKPVHCLSFQNDGSVAASGGLDAFARVWDLRTGRCIMFMEGHLKSIYSIDFSPDCYQVATGSEDNTCKIWDLRKRECVYTIPAHMNLISDSKFQKSG-GFFLVTASYDNTAKVWSNKTWQPLRTLSGHDNKVMSVDVSKDTQFIATSSYDRTFKLW 503
BLAST of u4 u6 small nuclear ribonucleoprotein vs. nr
Match: gi|817053209|ref|XP_012260721.1| (U4/U6 small nuclear ribonucleoprotein Prp4 [Athalia rosae]) HSP 1 Score: 567.77 bits (1462), Expect = 0.000e+0 Identity = 285/526 (54.18%), Postives = 375/526 (71.29%), Query Frame = 0
Query: 1 MSDEDDDLRYVKRQKIVHYGSLADATGAARTRQQEEDDEDDEDGPGGPN---------SNIEISHEYLPLNRDERLGEKDEILEEFERRKRARLINVSTDDAQVKKDLRALGRPICYFGEGPAERRHRLRDLLSQLGEDAIQKRQEAEDARAKEQREHD-ETTWYHEGPPALRDARQAMATYSLPRARARIGRQKVEAEMAESARMARNQEIQRNLKALDLEASQIADTRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPN------LASCDSQGEVNVWS-LESSQPLIAFPNLEA-RVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
MSD D+DL YVK+QK +HYGSL + T AR + DDE G P N +EY+ L DE ++ +LEEFERRK+AR INVSTDD++VKK+LR LG PIC FGEGPA+RR RLR+LL+ LGEDAI+K+ + E+ R Q E D E+TWYHEGP +L+ AR +A YSLPRA+AR+ ++E E+ + R AR QE+ + L+AL + SQI D+RPIS+CQFSP+SK+LAT SWSGLCK+W+VPDC TLRGH ++ + F+P AT++ G N LASC S G V +WS +S +PL E RVSR+ FHP GR L C +D SWRL+DLE + E+LHQEGH++AVHCI+FQ DG++ TGG DSFGRVWD+RTG+CIMF+EGHLK I VD+S +GYH+ T S DNSC++WDLR+R+ YTIPAH N++S+V ++K+ +Y++T+S+D TAK+W++KTWQ + TL GHD ++M CD++ D F+AT SYDRTFKLW
Sbjct: 1 MSD-DEDLVYVKKQKTLHYGSLEE-TERARLAAASVESSDDEKDNGSPTDTPTALTALGNSHAPNEYMELE-DEMSKDRQALLEEFERRKKARQINVSTDDSEVKKNLRQLGEPICLFGEGPADRRSRLRELLASLGEDAIRKKHDEEE-RPTHQTERDAESTWYHEGPDSLQIARSWIAAYSLPRAKARLDNSRLELELPGATRTARRQELLKKLQALSIYCSQIGDSRPISFCQFSPNSKLLATSSWSGLCKIWTVPDCSIARTLRGHTCNVSCIVFHPQATLTQEVIGENASPTCALASCASDGSVKLWSGGDSEEPLAEVEGHEPHRVSRIAFHPSGRFLGTCCHDASWRLWDLEQQAEVLHQEGHARAVHCISFQCDGSVVSTGGHDSFGRVWDLRTGRCIMFMEGHLKSIFGVDFSPNGYHLATASEDNSCKIWDLRKRSCIYTIPAHTNLLSDVKYQKT-EGQYLVTASYDNTAKIWSNKTWQPLKTLPGHDGKVMCCDVSPDHKFIATSSYDRTFKLW 521
BLAST of u4 u6 small nuclear ribonucleoprotein vs. nr
Match: gi|1133415752|ref|XP_019880737.1| (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp4-like [Aethina tumida] >gi|1133445245|ref|XP_019879173.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp4-like [Aethina tumida]) HSP 1 Score: 566.614 bits (1459), Expect = 0.000e+0 Identity = 272/510 (53.33%), Postives = 370/510 (72.55%), Query Frame = 0
Query: 1 MSDEDDDLRYVKRQKIVHYGSLADATGAARTRQQEEDDEDDEDGPGGPNSNIEISHEYLPLNRDERLGEKDEILEEFERRKRARLINVSTDDAQVKKDLRALGRPICYFGEGPAERRHRLRDLLSQLGEDAIQKRQEAEDARAKEQREHDETTWYHEGPPALRDARQAMATYSLPRARARIGRQKVEAEMAESARMARNQEIQRNLKALDLEASQIADTRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFP-NLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLWT 509
MSD DD+++Y+K+QK +HYGSL DA AR + D +DE+ P + S EY+ L D +K +LEEFERR++AR INVSTDDA+VK++LR LG PIC FGEGPA+RR RLRD+LS++GEDA+ +R EAE+ R + +++ ETTWYHEGP +LR AR +A YSLPRA+ R+ + + ++ + + A+ QE+Q+ L+ + + SQI DTRPIS+CQFSP+SK+LAT SW+GLCKVWSVPDC+ TL+GH ++G + F+P AT+S + N+ASC + G V +W +S +P+ ++ RVSR+ FHP GR L C +DNSWRL+DLE E+LHQEGH K V+CI+FQ DG++ TGG+DSFGRVWD+RTG+CIMF+EGHLK I +D+S +GYHI T S DN C++WDLR+R+ YTIPAH N++S V F+K Y++TSS+D T KLW ++TWQ + TL GHD ++M DI+ D ++AT SYDRTFK WT
Sbjct: 1 MSD-DDEVQYIKKQKTIHYGSLEDAE-RARLETDADGDANDENPPTS-MPQVHESSEYMELE-DAMSRDKQALLEEFERRRKARSINVSTDDAEVKRNLRHLGEPICLFGEGPADRRSRLRDILSRIGEDAVIRR-EAEEERKQYEKDQ-ETTWYHEGPDSLRTARLWIAHYSLPRAKERLEEARRQIDLPSATKTAKMQEMQKKLQVMSIYCSQIGDTRPISYCQFSPNSKLLATASWTGLCKVWSVPDCQLKQTLKGHTCNVGAIIFHPKATISQEENVCNMASCAADGSVKLWDFKSEEPIADIEGHMPHRVSRLGFHPSGRFLGTCCFDNSWRLWDLEQCTEVLHQEGHVKPVYCISFQVDGSVCATGGLDSFGRVWDLRTGRCIMFMEGHLKAIFGIDFSPNGYHIATASEDNCCKIWDLRKRSVLYTIPAHTNLISEVKFQKDG-GNYLVTSSYDNTVKLWTTRTWQPLKTLSGHDGKIMSVDISPDNQYIATSSYDRTFKFWT 503
BLAST of u4 u6 small nuclear ribonucleoprotein vs. nr
Match: gi|1069799266|ref|XP_018324248.1| (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp4 [Agrilus planipennis]) HSP 1 Score: 566.229 bits (1458), Expect = 0.000e+0 Identity = 275/513 (53.61%), Postives = 372/513 (72.51%), Query Frame = 0
Query: 1 MSDEDDDLRYVKRQKIVHYGSLADATGAARTRQQE---EDDEDDEDGPGGPNS-NIEISHEYLPLNRDERLGEKDEILEEFERRKRARLINVSTDDAQVKKDLRALGRPICYFGEGPAERRHRLRDLLSQLGEDAIQKRQEAEDARAKEQREHDETTWYHEGPPALRDARQAMATYSLPRARARIGRQKVEAEMAESARMARNQEIQRNLKALDLEASQIADTRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPNLASCDSQGEVNVWSLESSQPLIAFP-NLEARVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
MSD D+++ YVK+ K +HYGSL D T AR + E +EDD NS I IS+EY+ L D EK +LEEFERRK+AR INVSTDDA+VK++LR LG PIC FGEGPA+RR+RLR++LS +GEDAI KR+ E+ + E+ + ETTWYHEGP LR AR +A YSLPRA+ R+ K+ ++ + + AR QE+Q+ L+++ + +SQI DTRPIS+CQFSP+SK+LAT SW+G+CK+WSVPDCE TL+GH ++G + F+P AT++ + N+ +C S G V +W+ ES +P+ ++ RVSRV FHP GR L C +D SWRL+DL+ E+LHQEGH K V+CI+FQ DG++ TGG+DSFGRVWD+RTG+CIMF+EGHLK I +D+S +GYHI T S DN+C++WDLR+RN YTIPAH N++S+V F+K +Y++T+S+D T K+W S+TWQ + TL GHD ++M DI++D F+AT SYDRTFK W
Sbjct: 1 MSD-DEEVAYVKKTKTIHYGSLED-TEKARLAELEINGSTNEDDASKNSVQNSAQINISNEYMEL-EDNISKEKQALLEEFERRKKARQINVSTDDAEVKRNLRQLGEPICLFGEGPADRRNRLREILSCIGEDAIIKREVQEEKKLLEKDQ--ETTWYHEGPETLRIARLWIAEYSLPRAKERLEEAKLMKDLPPATKTARWQELQKKLQSITIHSSQIGDTRPISFCQFSPNSKLLATASWTGVCKLWSVPDCELKQTLKGHTCNVGAIVFHPQATLTQEKNVCNMVTCASDGSVKLWNFESDEPIADIEGHMPHRVSRVAFHPSGRFLGTCCFDCSWRLWDLQQCTEVLHQEGHVKPVYCISFQVDGSVCATGGLDSFGRVWDLRTGRCIMFMEGHLKSIYGIDFSPNGYHIATASEDNTCKIWDLRKRNLLYTIPAHTNLISDVKFQKGA-GDYLVTASYDNTVKIWTSRTWQPLKTLSGHDGKVMSVDISSDDQFIATSSYDRTFKFW 507
BLAST of u4 u6 small nuclear ribonucleoprotein vs. nr
Match: gi|998520476|ref|XP_015521220.1| (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp4 [Neodiprion lecontei]) HSP 1 Score: 565.074 bits (1455), Expect = 0.000e+0 Identity = 283/526 (53.80%), Postives = 376/526 (71.48%), Query Frame = 0
Query: 1 MSDEDDDLRYVKRQKIVHYGSLADATGAARTRQQEEDDEDDEDGPGGPN---------SNIEISHEYLPLNRDERLGEKDEILEEFERRKRARLINVSTDDAQVKKDLRALGRPICYFGEGPAERRHRLRDLLSQLGEDAIQKRQEAEDARAKEQREHD-ETTWYHEGPPALRDARQAMATYSLPRARARIGRQKVEAEMAESARMARNQEIQRNLKALDLEASQIADTRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPN------LASCDSQGEVNVW-SLESSQPLIAFPNLEA-RVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
MSD D+DL YVK+QK VHYGSL +A A T E +++ D P+ N+ IS+EY+ L DE ++ +LEEFERRK+AR INVSTDD++VK +LR LG PIC FGEGPA+RR RLR+LL+ LGEDAI+K+ E E+ R Q E D E+TWYHEGP +L+ AR +A+YSLPRAR R+ + + E E+ + R AR QE+ + L+AL + SQI D+RPIS+CQFSP+SK+LAT SWSGLCK+WSVP+C TLRGH ++ + F+P AT++ G N LASC S G V +W +S +PL E RVSR+ FHP GR L C +D SWRL+DLE + E+LHQEGH+KAVHCI+FQ DG++ TGG DSFGRVWD+RTG+CIMF+EGHLK I VD+S +G+H+ T S DNSC++WDLR+R+ YTIPAH N++S+V ++++ +Y++T+S+D TAK+W++KTWQ + TL GHD ++M CD++ D F+ T SYDRTFKLW
Sbjct: 1 MSD-DEDLVYVKKQKTVHYGSLEEAERARLTATSAESSDEERDHNRSPSDTPTTAAALGNVHISNEYMELE-DEMSKDRQALLEEFERRKKARQINVSTDDSEVKNNLRQLGEPICLFGEGPADRRSRLRELLASLGEDAIKKKHEDEE-RPLHQTERDAESTWYHEGPDSLQIARSWIASYSLPRARDRLEKSREELELPGATRTARRQELLKKLQALSIYCSQIGDSRPISFCQFSPNSKLLATSSWSGLCKIWSVPECSIARTLRGHTCNVSCIVFHPNATLTEDMLGENASPTCVLASCASDGSVKLWGGGKSEEPLAEVEGHEPHRVSRIAFHPSGRFLGTCCHDASWRLWDLEQQAEVLHQEGHAKAVHCISFQCDGSVVATGGHDSFGRVWDLRTGRCIMFMEGHLKSIFGVDFSPNGFHLATASEDNSCKIWDLRKRSCIYTIPAHTNLLSDVKYQRT-EGQYLVTASYDNTAKIWSNKTWQPLKTLPGHDGKVMCCDVSPDHKFIVTSSYDRTFKLW 522
BLAST of u4 u6 small nuclear ribonucleoprotein vs. nr
Match: gi|861650984|gb|KMQ97531.1| (u4 u6 small nuclear ribonucleoprotein prp4-like protein [Lasius niger]) HSP 1 Score: 564.688 bits (1454), Expect = 0.000e+0 Identity = 282/526 (53.61%), Postives = 372/526 (70.72%), Query Frame = 0
Query: 1 MSDEDDDLRYVKRQKIVHYGSLADATGA--------ARTRQQEEDDEDDEDGPGGPNS--NIEISHEYLPLNRDERLGEKDEILEEFERRKRARLINVSTDDAQVKKDLRALGRPICYFGEGPAERRHRLRDLLSQLGEDAIQKRQEAEDARAKEQREHDETTWYHEGPPALRDARQAMATYSLPRARARIGRQKVEAEMAESARMARNQEIQRNLKALDLEASQIADTRPISWCQFSPDSKMLATGSWSGLCKVWSVPDCEEVITLRGHNDHIGNVTFNPLATVSLAASGPN------LASCDSQGEVNVWSLESS-QPLIAFPNLEA-RVSRVQFHPMGRHLAACAYDNSWRLFDLETRDELLHQEGHSKAVHCIAFQNDGALACTGGVDSFGRVWDMRTGQCIMFLEGHLKGIVCVDWSMDGYHIITGSTDNSCRVWDLRRRNKEYTIPAHNNVVSNVVFEKSPRSEYILTSSFDGTAKLWASKTWQHMATLKGHDSRLMGCDIAADGSFVATCSYDRTFKLW 508
MSD D+DL YVK+QK VHYGSL +A A T +E+D + D NS N+ IS+EY+ L DE ++ +LEEFERRK+AR INVSTDD++VKK LR LG PIC FGEGPA+RR RLR+LL+ +GEDAI+K+ E E+ + ETTWYHEGP +LR AR +A+YSLPRA+AR+ + + E+ +AR A+ QE+ + L+AL + SQI DTRPIS+CQFSP+SK+LAT SWSGLCK+WSVPDC + TL+GH ++G + F+P AT++ G N LASC S G V +WS + +PL E RVSR+ FHP GR L C YD SWRL+DLE + E+LHQEGHS+AVHCI+FQ DG++ TG DSFGRVWD+RTG+CIMF+EGHL I VD+S +G+HI T S DN+C++WDLR+R YTIPAH N++S+V +++ +Y++T+S+D TAK+W++KTWQ + L GHD ++M D++ D F+AT SYDRTFKLW
Sbjct: 1 MSD-DEDLVYVKKQKTVHYGSLEEAERARLAALQIAVETTDEEKDITNANDITNASNSAGNVHISNEYMELE-DEMSKDRQALLEEFERRKKARQINVSTDDSEVKKHLRQLGEPICLFGEGPADRRTRLRELLASVGEDAIRKKHEEEEKPLHTIEKDTETTWYHEGPESLRIARSWIASYSLPRAKARLNEARQDLELPTAARTAKRQELLKKLQALSIYCSQIGDTRPISFCQFSPNSKILATASWSGLCKLWSVPDCTLLRTLKGHACNVGCIVFHPKATITEDVIGDNAEQTCVLASCASDGTVKLWSGGTGEEPLAEVEGHEPHRVSRIAFHPSGRFLGTCCYDASWRLWDLEQQAEVLHQEGHSRAVHCISFQCDGSVCATGSHDSFGRVWDLRTGRCIMFMEGHLTSIFGVDFSSNGFHIATASEDNTCKIWDLRKRTCIYTIPAHTNLLSDVKYQRI-EGQYLVTASYDNTAKIWSNKTWQPLKVLPGHDGKVMSVDVSPDHKFIATSSYDRTFKLW 523 The following BLAST results are available for this feature:
BLAST of u4 u6 small nuclear ribonucleoprotein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of u4 u6 small nuclear ribonucleoprotein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of u4 u6 small nuclear ribonucleoprotein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold57_size444674:46736..48274+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold57_size444674-processed-gene-0.3 ID=snap_masked-scaffold57_size444674-processed-gene-0.3|Name=u4 u6 small nuclear ribonucleoprotein|organism=Tigriopus kingsejongensis|type=gene|length=1539bp|location=Sequence derived from alignment at scaffold57_size444674:46736..48274+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'u4 u6 small nuclear ribonucleoprotein' has the following synonyms
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