nuclear hormone receptor, snap_masked-scaffold58_size443543-processed-gene-3.1 (gene) Tigriopus kingsejongensis

Overview
Namenuclear hormone receptor
Unique Namesnap_masked-scaffold58_size443543-processed-gene-3.1
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000012486 (supercontig:LSalAtl2s:LSalAtl2s91:348479:353390:-1 gene:EMLSAG00000012486 transcript:EMLSAT00000012486 description:"maker-LSalAtl2s91-snap-gene-4.8")

HSP 1 Score: 141.354 bits (355), Expect = 3.318e-41
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 0 
Query:   14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMR 73
            GDR   RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMR
Sbjct:  224 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMR 286
[Close]
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000009941 (supercontig:LSalAtl2s:LSalAtl2s649:484085:485655:-1 gene:EMLSAG00000009941 transcript:EMLSAT00000009941 description:"maker-LSalAtl2s649-snap-gene-4.11")

HSP 1 Score: 100.138 bits (248), Expect = 2.960e-27
Identity = 38/59 (64.41%), Postives = 49/59 (83.05%), Query Frame = 0 
Query:   17 RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            +HYG  +CEGCK FFKRS+R+ L YQCRG+K+C V +HHRN+CQ+CRL+KC  MGMR +
Sbjct:   93 KHYGQFTCEGCKSFFKRSVRRNLTYQCRGSKNCPVDQHHRNQCQHCRLKKCFKMGMRRE 151
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BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000009940 (supercontig:LSalAtl2s:LSalAtl2s649:353131:422335:-1 gene:EMLSAG00000009940 transcript:EMLSAT00000009940 description:"maker-LSalAtl2s649-augustus-gene-4.7")

HSP 1 Score: 100.138 bits (248), Expect = 8.013e-27
Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 0 
Query:   14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            GD+   +HYG  +CEGCK FFKRS+R+ L YQCRG++ C + +HHRN+CQ+CRL+KC+ MGMR +
Sbjct:  438 GDKSSGKHYGQFTCEGCKSFFKRSVRRALTYQCRGSRSCPIDQHHRNQCQHCRLKKCIKMGMRKE 502
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BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000001919 (supercontig:LSalAtl2s:LSalAtl2s132:616435:622808:1 gene:EMLSAG00000001919 transcript:EMLSAT00000001919 description:"augustus_masked-LSalAtl2s132-processed-gene-6.5")

HSP 1 Score: 96.2857 bits (238), Expect = 1.525e-25
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 0 
Query:   14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            GDR   +HYG  SCEGCKGFFKR++RK+L Y CR N+DC + K  RNRCQYCR  KCL  GM+ +
Sbjct:   95 GDRASGKHYGVYSCEGCKGFFKRTVRKELTYACRENRDCVIDKRQRNRCQYCRYMKCLDTGMKRE 159
[Close]
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000009969 (supercontig:LSalAtl2s:LSalAtl2s651:302705:304416:-1 gene:EMLSAG00000009969 transcript:EMLSAT00000009969 description:"maker-LSalAtl2s651-augustus-gene-2.5")

HSP 1 Score: 93.5893 bits (231), Expect = 1.360e-24
Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = 0 
Query:    5 ILSCLSLTRGDRRHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            IL  +   +   +HYG  +CEGCK FFKR +R+ L +QCR  K C V +HHRN+CQ+CR +KCL MGM+ +
Sbjct:   73 ILCVVCGDKSSGKHYGQFTCEGCKSFFKRCVRRSLTFQCRSKKSCPVDQHHRNQCQHCRFKKCLNMGMKKE 143
[Close]
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000000733 (supercontig:LSalAtl2s:LSalAtl2s1117:84476:96586:1 gene:EMLSAG00000000733 transcript:EMLSAT00000000733 description:"maker-LSalAtl2s1117-snap-gene-1.23")

HSP 1 Score: 88.9669 bits (219), Expect = 8.636e-23
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 0 
Query:   18 HYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            HYG I+CEGCKGFF+RS    + YQC   K+C V + +RNRCQ+CRLQKCLA+GM  D
Sbjct:   58 HYGVITCEGCKGFFRRSQSSVVNYQCPRQKNCIVDRVNRNRCQFCRLQKCLALGMSRD 115
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BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000005090 (supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-1 gene:EMLSAG00000005090 transcript:EMLSAT00000005090 description:"augustus_masked-LSalAtl2s269-processed-gene-3.0")

HSP 1 Score: 88.1965 bits (217), Expect = 1.253e-22
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 0 
Query:    9 LSLTRGDRR---HYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSDC 76
            L L  GDR    HY A++CEGCKGFF+RSI K   Y C+ N DCE+  + R +CQ CRL+KC A GMR++C
Sbjct:  172 LCLVCGDRASGYHYNALACEGCKGFFRRSITKNSNYTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAEC 242
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BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000013004 (supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 gene:EMLSAG00000013004 transcript:EMLSAT00000013004 description:"augustus_masked-LSalAtl2s98-processed-gene-9.1")

HSP 1 Score: 88.1965 bits (217), Expect = 1.397e-22
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 0 
Query:   17 RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGM 72
            +HYG  +CEGCKGFFKR+++K   Y C  +K+C V K  RNRCQ+CR QKCLA+GM
Sbjct:  419 QHYGVRTCEGCKGFFKRTVQKNAKYVCLADKNCPVDKRRRNRCQFCRFQKCLAVGM 474
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BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000007361 (supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1 gene:EMLSAG00000007361 transcript:EMLSAT00000007361 description:"maker-LSalAtl2s418-augustus-gene-3.13")

HSP 1 Score: 87.4261 bits (215), Expect = 2.489e-22
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 0 
Query:   14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMR 73
            GDR   +HYGA SC+GCKGFF+RS+RK+  Y CR N+ C V K  RN C+YCRL+ C+  GM+
Sbjct:  155 GDRATGKHYGAASCDGCKGFFRRSVRKERVYGCRQNRACIVNKDKRNNCRYCRLKMCIKAGMK 217
[Close]
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000008543 (supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1 gene:EMLSAG00000008543 transcript:EMLSAT00000008543 description:"maker-LSalAtl2s527-augustus-gene-1.53")

HSP 1 Score: 87.4261 bits (215), Expect = 2.662e-22
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 0 
Query:   13 RGDRRHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGM 72
            R    HYG I+CEGCKGFFKR+++ +  Y C  + +CE+ K  RNRCQYCR QKCL  GM
Sbjct:  289 RATGLHYGIITCEGCKGFFKRTVQNKRIYTCVADGECEINKAQRNRCQYCRFQKCLQKGM 348
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BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|73620966|sp|Q24142.2|HR78_DROME (RecName: Full=Nuclear hormone receptor HR78; Short=dHR78; AltName: Full=Nuclear receptor XR78E/F; AltName: Full=Nuclear receptor subfamily 2 group D member 1)

HSP 1 Score: 132.88 bits (333), Expect = 5.719e-37
Identity = 59/70 (84.29%), Postives = 61/70 (87.14%), Query Frame = 0 
Query:    9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            L L  GDR   RHYGAISCEGCKGFFKRSIRKQLGYQCRG  +CEVTKHHRNRCQ+CRLQKCLA GMRSD
Sbjct:   51 LCLVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGAMNCEVTKHHRNRCQFCRLQKCLASGMRSD 120
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BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|68566021|sp|Q26622.1|SHR2_STRPU (RecName: Full=Orphan steroid hormone receptor 2; AltName: Full=SpSHR2)

HSP 1 Score: 127.102 bits (318), Expect = 6.446e-35
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 0 
Query:   14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            GD+   RHYGAISCEGCKGFFKRSIRK LGY CRGNKDC++ KH+RNRCQYCRLQKCL MGM+SD
Sbjct:   91 GDKASGRHYGAISCEGCKGFFKRSIRKHLGYTCRGNKDCQIIKHNRNRCQYCRLQKCLDMGMKSD 155
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BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|57015416|sp|Q9N4B8.4|NHR41_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-41)

HSP 1 Score: 121.709 bits (304), Expect = 6.539e-33
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 0 
Query:    9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            L +  GD+   RHYGA+SCEGCKGFFKRSIRK++GY CR  KDC VTK HRNRCQYCRL+KCL+MGMRS+
Sbjct:  151 LCVVCGDKASGRHYGAVSCEGCKGFFKRSIRKRIGYVCRSQKDCPVTKFHRNRCQYCRLRKCLSMGMRSE 220
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BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|341942228|sp|Q505F1.3|NR2C1_MOUSE (RecName: Full=Nuclear receptor subfamily 2 group C member 1; AltName: Full=Orphan nuclear receptor TR2; AltName: Full=Testicular receptor 2; Short=mTR2)

HSP 1 Score: 117.472 bits (293), Expect = 1.921e-31
Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 0 
Query:    9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            L +  GD+   RHYGAI+CEGCKGFFKRSIRK L Y CRG+KDC + KHHRNRCQYCRLQ+C+A GM+ D
Sbjct:  100 LCVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVYSCRGSKDCVINKHHRNRCQYCRLQRCIAFGMKQD 169
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BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|75066579|sp|Q95K90.1|NR2C1_MACFA (RecName: Full=Nuclear receptor subfamily 2 group C member 1)

HSP 1 Score: 116.701 bits (291), Expect = 3.103e-31
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 0 
Query:    9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            L +  GD+   RHYGA++CEGCKGFFKRSIRK L Y CRG+KDC + KHHRNRCQYCRLQ+C+A GM+ D
Sbjct:  112 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQD 181
[Close]
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|81902145|sp|Q8VIJ4.1|NR2C1_RAT (RecName: Full=Nuclear receptor subfamily 2 group C member 1; AltName: Full=Orphan nuclear receptor TR2; AltName: Full=Testicular receptor 2)

HSP 1 Score: 116.701 bits (291), Expect = 3.286e-31
Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 0 
Query:    9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            L +  GD+   RHYGAI+CEGCKGFFKRSIRK L Y CRG+KDC + KHHRNRCQYCRLQ+C+A GM+ D
Sbjct:  100 LCVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQD 169
[Close]
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|226693548|sp|P13056.2|NR2C1_HUMAN (RecName: Full=Nuclear receptor subfamily 2 group C member 1; AltName: Full=Orphan nuclear receptor TR2; AltName: Full=Testicular receptor 2)

HSP 1 Score: 116.701 bits (291), Expect = 3.392e-31
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 0 
Query:    9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            L +  GD+   RHYGA++CEGCKGFFKRSIRK L Y CRG+KDC + KHHRNRCQYCRLQ+C+A GM+ D
Sbjct:  112 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQD 181
[Close]
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|75061946|sp|Q5RCZ5.1|NR2C1_PONAB (RecName: Full=Nuclear receptor subfamily 2 group C member 1)

HSP 1 Score: 116.316 bits (290), Expect = 4.193e-31
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 0 
Query:    9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            L +  GD+   RHYGA++CEGCKGFFKRSIRK L Y CRG+KDC + KHHRNRCQYCRLQ+C+A GM+ D
Sbjct:  113 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQD 182
[Close]
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|123892381|sp|Q28CK1.1|NR2C1_XENTR (RecName: Full=Nuclear receptor subfamily 2 group C member 1; AltName: Full=Developmental orphan receptor 2; Short=DOR2; AltName: Full=Orphan nuclear receptor TR2; AltName: Full=Testicular receptor 2)

HSP 1 Score: 115.931 bits (289), Expect = 7.556e-31
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 0 
Query:    9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            L +  GD+   RHYGA++CEGCKGFFKRSIRK L Y CRG+KDC + KH+RNRCQYCRLQ+C+A+GM+ D
Sbjct:  151 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYTCRGSKDCVINKHYRNRCQYCRLQRCIALGMKQD 220
[Close]
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|82201033|sp|Q6GN21.1|N2C1A_XENLA (RecName: Full=Nuclear receptor subfamily 2 group C member 1-A; AltName: Full=Developmental orphan receptor 2-A; Short=DOR2-A; Short=xDOR2-A; AltName: Full=Orphan nuclear receptor TR2-A; AltName: Full=Testicular receptor 2-A)

HSP 1 Score: 115.546 bits (288), Expect = 8.949e-31
Identity = 46/70 (65.71%), Postives = 58/70 (82.86%), Query Frame = 0 
Query:    9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            L +  GD+   RHYGA++CEGCKGFFKRSIRK L Y CRG+KDC + KH+RNRCQYCRLQ+C+++GM+ D
Sbjct:  151 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYTCRGSKDCVINKHYRNRCQYCRLQRCMSLGMKQD 220
[Close]
BLAST of nuclear hormone receptor vs. nr
Match: gi|657600370|gb|AID52846.1| (hormone receptor 78 [Tigriopus japonicus])

HSP 1 Score: 145.206 bits (365), Expect = 8.935e-39
Identity = 62/65 (95.38%), Postives = 62/65 (95.38%), Query Frame = 0 
Query:   14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            GDR   RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD
Sbjct:  231 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 295
[Close]
BLAST of nuclear hormone receptor vs. nr
Match: gi|1238856880|ref|XP_022245333.1| (nuclear receptor subfamily 2 group C member 2-like isoform X3 [Limulus polyphemus])

HSP 1 Score: 141.354 bits (355), Expect = 1.402e-37
Identity = 60/76 (78.95%), Postives = 65/76 (85.53%), Query Frame = 0 
Query:    2 PAWILSCLSLTRGDRRHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSDCK 77
            P + L  +   +   RHYGAISCEGCKGFFKRSIRKQLGY CRGN+DCEVTKHHRNRCQYCRLQKCLAMGMR+DCK
Sbjct:  140 PPFELCVVCGDKASGRHYGAISCEGCKGFFKRSIRKQLGYACRGNRDCEVTKHHRNRCQYCRLQKCLAMGMRADCK 215
[Close]
BLAST of nuclear hormone receptor vs. nr
Match: gi|1238856870|ref|XP_022245327.1| (nuclear receptor subfamily 2 group C member 2-like isoform X1 [Limulus polyphemus] >gi|1238856872|ref|XP_022245329.1| nuclear receptor subfamily 2 group C member 2-like isoform X1 [Limulus polyphemus] >gi|1238856874|ref|XP_022245330.1| nuclear receptor subfamily 2 group C member 2-like isoform X1 [Limulus polyphemus] >gi|1238856876|ref|XP_022245331.1| nuclear receptor subfamily 2 group C member 2-like isoform X1 [Limulus polyphemus])

HSP 1 Score: 140.584 bits (353), Expect = 2.578e-37
Identity = 60/76 (78.95%), Postives = 65/76 (85.53%), Query Frame = 0 
Query:    2 PAWILSCLSLTRGDRRHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSDCK 77
            P + L  +   +   RHYGAISCEGCKGFFKRSIRKQLGY CRGN+DCEVTKHHRNRCQYCRLQKCLAMGMR+DCK
Sbjct:  140 PPFELCVVCGDKASGRHYGAISCEGCKGFFKRSIRKQLGYACRGNRDCEVTKHHRNRCQYCRLQKCLAMGMRADCK 215
[Close]
BLAST of nuclear hormone receptor vs. nr
Match: gi|668462065|gb|KFB49569.1| (hypothetical protein ZHAS_00017577 [Anopheles sinensis])

HSP 1 Score: 140.584 bits (353), Expect = 4.808e-37
Identity = 62/72 (86.11%), Postives = 64/72 (88.89%), Query Frame = 0 
Query:    9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSDCK 77
            L L  GDR   RHYGAISCEGCKGFFKRSIRKQLGYQCRG+ +CEVTKHHRNRCQYCRLQKCLA GMRSDCK
Sbjct:   49 LCLVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSMNCEVTKHHRNRCQYCRLQKCLACGMRSDCK 120
[Close]
BLAST of nuclear hormone receptor vs. nr
Match: gi|805816150|ref|XP_012148686.1| (PREDICTED: orphan steroid hormone receptor 2 isoform X1 [Megachile rotundata])

HSP 1 Score: 138.658 bits (348), Expect = 9.705e-37
Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 0 
Query:   14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSDC 76
            GDR   RHYGAISCEGCKGFFKRSIRKQLGYQCRG+K CEVTKHHRNRCQYCRLQKCLAMGMRSDC
Sbjct:  192 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSKSCEVTKHHRNRCQYCRLQKCLAMGMRSDC 257
[Close]
BLAST of nuclear hormone receptor vs. nr
Match: gi|646712422|gb|KDR17183.1| (Nuclear receptor subfamily 2 group C member 2, partial [Zootermopsis nevadensis])

HSP 1 Score: 137.117 bits (344), Expect = 1.370e-36
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0 
Query:   17 RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            RHYGAISCEGCKGFFKRSIRKQLGYQCRGNK CEVTKHHRNRCQYCRLQKCLAMGMRSD
Sbjct:    3 RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKSCEVTKHHRNRCQYCRLQKCLAMGMRSD 61
[Close]
BLAST of nuclear hormone receptor vs. nr
Match: gi|805816166|ref|XP_012148692.1| (PREDICTED: orphan steroid hormone receptor 2 isoform X4 [Megachile rotundata])

HSP 1 Score: 137.887 bits (346), Expect = 1.454e-36
Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 0 
Query:   14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSDC 76
            GDR   RHYGAISCEGCKGFFKRSIRKQLGYQCRG+K CEVTKHHRNRCQYCRLQKCLAMGMRSDC
Sbjct:  133 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSKSCEVTKHHRNRCQYCRLQKCLAMGMRSDC 198
[Close]
BLAST of nuclear hormone receptor vs. nr
Match: gi|805816156|ref|XP_012148689.1| (PREDICTED: orphan steroid hormone receptor 2 isoform X3 [Megachile rotundata] >gi|805816160|ref|XP_012148690.1| PREDICTED: orphan steroid hormone receptor 2 isoform X3 [Megachile rotundata] >gi|805816163|ref|XP_012148691.1| PREDICTED: orphan steroid hormone receptor 2 isoform X3 [Megachile rotundata])

HSP 1 Score: 137.887 bits (346), Expect = 1.734e-36
Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 0 
Query:   14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSDC 76
            GDR   RHYGAISCEGCKGFFKRSIRKQLGYQCRG+K CEVTKHHRNRCQYCRLQKCLAMGMRSDC
Sbjct:  156 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSKSCEVTKHHRNRCQYCRLQKCLAMGMRSDC 221
[Close]
BLAST of nuclear hormone receptor vs. nr
Match: gi|1061483032|gb|ODN00279.1| (Nuclear receptor subfamily 2 group C member 2 [Orchesella cincta])

HSP 1 Score: 135.961 bits (341), Expect = 2.437e-36
Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = 0 
Query:   14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75
            GDR   RHYGAISCEGCKGFFKRSIRK+LGY CRGNK+CEVTKHHRNRCQYCRLQKCL MGMRSD
Sbjct:   39 GDRASGRHYGAISCEGCKGFFKRSIRKKLGYSCRGNKNCEVTKHHRNRCQYCRLQKCLQMGMRSD 103
[Close]
BLAST of nuclear hormone receptor vs. nr
Match: gi|805816169|ref|XP_012148693.1| (PREDICTED: orphan steroid hormone receptor 2 isoform X5 [Megachile rotundata] >gi|805816172|ref|XP_012148694.1| PREDICTED: orphan steroid hormone receptor 2 isoform X5 [Megachile rotundata])

HSP 1 Score: 136.346 bits (342), Expect = 2.778e-36
Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 0 
Query:   14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSDC 76
            GDR   RHYGAISCEGCKGFFKRSIRKQLGYQCRG+K CEVTKHHRNRCQYCRLQKCLAMGMRSDC
Sbjct:   97 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSKSCEVTKHHRNRCQYCRLQKCLAMGMRSDC 162
The following BLAST results are available for this feature:
BLAST of nuclear hormone receptor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25
Match NameE-valueIdentityDescription
EMLSAG000000124863.318e-4195.24supercontig:LSalAtl2s:LSalAtl2s91:348479:353390:-1... [more]
EMLSAG000000099412.960e-2764.41supercontig:LSalAtl2s:LSalAtl2s649:484085:485655:-... [more]
EMLSAG000000099408.013e-2758.46supercontig:LSalAtl2s:LSalAtl2s649:353131:422335:-... [more]
EMLSAG000000019191.525e-2561.54supercontig:LSalAtl2s:LSalAtl2s132:616435:622808:1... [more]
EMLSAG000000099691.360e-2450.70supercontig:LSalAtl2s:LSalAtl2s651:302705:304416:-... [more]
EMLSAG000000007338.636e-2362.07supercontig:LSalAtl2s:LSalAtl2s1117:84476:96586:1 ... [more]
EMLSAG000000050901.253e-2254.93supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-... [more]
EMLSAG000000130041.397e-2260.71supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 ... [more]
EMLSAG000000073612.489e-2257.14supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1... [more]
EMLSAG000000085432.662e-2256.67supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1... [more]

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BLAST of nuclear hormone receptor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
gi|73620966|sp|Q24142.2|HR78_DROME5.719e-3784.29RecName: Full=Nuclear hormone receptor HR78; Short... [more]
gi|68566021|sp|Q26622.1|SHR2_STRPU6.446e-3581.54RecName: Full=Orphan steroid hormone receptor 2; A... [more]
gi|57015416|sp|Q9N4B8.4|NHR41_CAEEL6.539e-3372.86RecName: Full=Nuclear hormone receptor family memb... [more]
gi|341942228|sp|Q505F1.3|NR2C1_MOUSE1.921e-3170.00RecName: Full=Nuclear receptor subfamily 2 group C... [more]
gi|75066579|sp|Q95K90.1|NR2C1_MACFA3.103e-3168.57RecName: Full=Nuclear receptor subfamily 2 group C... [more]
gi|81902145|sp|Q8VIJ4.1|NR2C1_RAT3.286e-3170.00RecName: Full=Nuclear receptor subfamily 2 group C... [more]
gi|226693548|sp|P13056.2|NR2C1_HUMAN3.392e-3168.57RecName: Full=Nuclear receptor subfamily 2 group C... [more]
gi|75061946|sp|Q5RCZ5.1|NR2C1_PONAB4.193e-3168.57RecName: Full=Nuclear receptor subfamily 2 group C... [more]
gi|123892381|sp|Q28CK1.1|NR2C1_XENTR7.556e-3167.14RecName: Full=Nuclear receptor subfamily 2 group C... [more]
gi|82201033|sp|Q6GN21.1|N2C1A_XENLA8.949e-3165.71RecName: Full=Nuclear receptor subfamily 2 group C... [more]

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BLAST of nuclear hormone receptor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|657600370|gb|AID52846.1|8.935e-3995.38hormone receptor 78 [Tigriopus japonicus][more]
gi|1238856880|ref|XP_022245333.1|1.402e-3778.95nuclear receptor subfamily 2 group C member 2-like... [more]
gi|1238856870|ref|XP_022245327.1|2.578e-3778.95nuclear receptor subfamily 2 group C member 2-like... [more]
gi|668462065|gb|KFB49569.1|4.808e-3786.11hypothetical protein ZHAS_00017577 [Anopheles sine... [more]
gi|805816150|ref|XP_012148686.1|9.705e-3792.42PREDICTED: orphan steroid hormone receptor 2 isofo... [more]
gi|646712422|gb|KDR17183.1|1.370e-3698.31Nuclear receptor subfamily 2 group C member 2, par... [more]
gi|805816166|ref|XP_012148692.1|1.454e-3692.42PREDICTED: orphan steroid hormone receptor 2 isofo... [more]
gi|805816156|ref|XP_012148689.1|1.734e-3692.42PREDICTED: orphan steroid hormone receptor 2 isofo... [more]
gi|1061483032|gb|ODN00279.1|2.437e-3689.23Nuclear receptor subfamily 2 group C member 2 [Orc... [more]
gi|805816169|ref|XP_012148693.1|2.778e-3692.42PREDICTED: orphan steroid hormone receptor 2 isofo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold58_size443543supercontigscaffold58_size443543:330609..331203 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteP:steroid hormone mediated signaling pathway
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold58_size443543-processed-gene-3.1-mRNA-1snap_masked-scaffold58_size443543-processed-gene-3.1-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold58_size443543:330609..331203+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold58_size443543-processed-gene-3.1 ID=snap_masked-scaffold58_size443543-processed-gene-3.1|Name=nuclear hormone receptor|organism=Tigriopus kingsejongensis|type=gene|length=595bp|location=Sequence derived from alignment at scaffold58_size443543:330609..331203+ (Tigriopus kingsejongensis)
ATGCCGGCCTGGATTCTCTCTTGCCTCTCCCTGACCCGAGGAGATCGTGA
CCAAGGGTGCCCTCCGATTATTCAAAGTAGTCAAACAGATTTTGAAATTG
GCTCCCGACTGGGCGTGACCCCCTGAACCTGGGCTTTTCTCCTCTGGAAA
TTGGGGTTGACCTCTGTGCAGGTCAGAATCTGGGGGCCTTCTCCGCTCGT
CATATCATTAGTGATTAAGTGATCAGGGATGCTAAAGAGTTGGAGAAAAC
AACGGCTTTTAATGCGCTTCGTGAGCGCCATTAGGCGATGATGATTAAGA
TATCCGAGTCAGCAGAGCCCTCACACCCATGATTATCCAGGCCCAACGTG
GCCGCCGAATCTCACGCGATGAACATCTCGATCATCTCTTTCCCTTCTTT
CCAGGCCGACATTATGGTGCAATCAGTTGCGAAGGCTGCAAAGGCTTCTT
CAAACGCTCAATCCGCAAACAGCTCGGCTATCAATGCCGAGGCAACAAGG
ACTGTGAGGTGACCAAGCATCATCGGAACCGATGTCAGTACTGCCGACTC
CAGAAGTGTCTGGCCATGGGCATGCGCAGTGATTGTAAGTATTAA
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Synonyms
The feature 'nuclear hormone receptor' has the following synonyms
Synonym
Tk00704
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