transcription factor partial, snap_masked-scaffold619_size123246-processed-gene-0.28 (gene) Tigriopus kingsejongensis

Overview
Nametranscription factor partial
Unique Namesnap_masked-scaffold619_size123246-processed-gene-0.28
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of transcription factor partial vs. L. salmonis genes
Match: EMLSAG00000001681 (supercontig:LSalAtl2s:LSalAtl2s128:838618:857555:-1 gene:EMLSAG00000001681 transcript:EMLSAT00000001681 description:"maker-LSalAtl2s128-snap-gene-8.19")

HSP 1 Score: 53.5286 bits (127), Expect = 5.321e-9
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 0 
Query:   97 KKSKKFQK--EYGRLKHLVPALTEREDLSKVEIVEETIRYIDALHHQLASRI 146
            KK +K+ +  EY RL+ +VPA+  +  +SK EI+EE I+YID+LH QL S I
Sbjct:   80 KKYRKYARNMEYRRLRSIVPAVAHKRGVSKGEILEEAIKYIDSLHEQLISTI 131
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BLAST of transcription factor partial vs. L. salmonis genes
Match: EMLSAG00000001141 (supercontig:LSalAtl2s:LSalAtl2s118:431419:431791:-1 gene:EMLSAG00000001141 transcript:EMLSAT00000001141 description:"maker-LSalAtl2s118-augustus-gene-4.18")

HSP 1 Score: 46.2098 bits (108), Expect = 3.127e-7
Identity = 24/56 (42.86%), Postives = 34/56 (60.71%), Query Frame = 0 
Query:   92 SAAELKKSKKFQKEYGRLKHLVPAL-TEREDLSKVEIVEETIRYIDALHHQLASRI 146
            S  ELK    F K+  +LK L+P + T  +D+S VE++EE  RYI+ LH  L  +I
Sbjct:    2 SRKELKFQSAFDKDLSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQI 57
The following BLAST results are available for this feature:
BLAST of transcription factor partial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAG000000016815.321e-950.00supercontig:LSalAtl2s:LSalAtl2s128:838618:857555:-... [more]
EMLSAG000000011413.127e-742.86supercontig:LSalAtl2s:LSalAtl2s118:431419:431791:-... [more]
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BLAST of transcription factor partial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of transcription factor partial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold619_size123246supercontigscaffold619_size123246:118316..120051 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold619_size123246-processed-gene-0.28-mRNA-1snap_masked-scaffold619_size123246-processed-gene-0.28-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold619_size123246:118316..120051-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold619_size123246-processed-gene-0.28 ID=snap_masked-scaffold619_size123246-processed-gene-0.28|Name=transcription factor partial|organism=Tigriopus kingsejongensis|type=gene|length=1736bp|location=Sequence derived from alignment at scaffold619_size123246:118316..120051- (Tigriopus kingsejongensis)
ATGGGTGAAGGAGACGAAGAACTCCAAATTGAGCCTCCGGTTGTTCCCAA
AAGCGGGCTGAAGCGTGGTGCCGTGTTCATGGCGCCCGCTTTGGATCGCT
TGAAGCCCCGAAGTTTGAGCGACAATTCCAAAAGATTGTGCTTGGATGAG
CGAGGCAGTGGAACGAGCTCCTCATCGCACTTGTGTTCCAATTTAATGAC
GACCACTTCCTCATCGTCCGGGTGCTCCAACTTTGCCTGCACCTCCAACT
CTTCGGCACCGTCGGGATCCTCATCCGCAGCTGAGCTGAAGAAGTCGAAA
AAGTTTCAAAAAGAATACGGACGACTCAAGCATTTGGTGCCCGCTCTAAC
CGAGCGCGAGGATCTCTCCAAGGTGGGCACAAGTTCCCCCAATGAGGCTG
AGAGACTCGGAGATTACCCTTCACCTTTGTTGTGTTCCAGGTGGAAATCG
TGGAGGAGACCATCCGCTACATCGATGCTCTGCACCACCAATTGGCCTCC
CGGATCGATCCCAATGTCCTCTCGGCTGCCATTGAGGACCAGCAGAATTC
ATCCAGCGAGAACCCGAACAATTCAAGTAAGTCATCCCTGGTACCGTCGA
GTACCTCTGTGTCCGCCTCCGCTATTGATATACCCATGACACTCGCCCAG
AGCTGAGGGCTTCTCTTTGGCTCCTCCAACCCATTTATGATAAATAATAG
ATGAGGCTAACTGAATTAAATGTCAAACACGTGAACCCAATCTCATGCAA
TGGAAAAGAGATTGCGGGAACCGTCGAGGAGGAGGAGAAGAATGCCTTTG
GCAGGTCCCGTTTGCCCAGGCTTTCATTGACGGCCACCAGACCCCTTAAA
TACAATACTAGTGAAGCCTTAGAGTGCACCACATGGAACCCGACTGAGAG
TGGAGTAGGAATCGCTTGAAAATTCTCCTGGGAAATTCAATCTACTGCCA
AGATGGATGAATGGGCGAATGAATAGCTAGTGAACAAACTCAGCAGAGGC
GTCTGGGATCTGGGGAGCCGAGGGTCGAGGATTTGACATCGGCATACCCA
CGTGTCAGAATCCTGATCCATGGGCGGCTGAAGAATCTGGGAAATTCGTC
CCCTCCAAGAAATTAAATGCCATTGGCCCATCATTGGAAAGATATGCCGG
GCTGAAGTGGGGAACCCGTGTCCGGGCATCAATATGTGGTGTGGCGCCAT
TAGGGGGGTTGGAACATTGTTGTTCCATGAGGCAGAACAACGAGGGAACA
GCTGCTGCTACTGCTGATGTTGCTGCTGACTGGTTCCCCCTCATTGCCTA
CCAGCGGGCAGGCGGGAATTGGGGATGAGGAGGGTGGTAGAAAGCCCCTT
TTTTCTTGGGACTCGGTCCCAAACTTTCTTGAGCTCAATGAGTGTATACT
ATGTATGTACTTCTCTGATTAGAGCAGATGTTCGAAGAGGTTTCCCTACA
AATCGTCTGCACCCTTCCAGATCCACAAGACCCTCTGAGGCAAGTGAGCT
CGAGCGAATACCACGCCCAGCCTCGTGGCGCGGCCTCTCGCGCTTCCTCC
CTCATTCCCAGTTCAATGGACTCTCCGTCAGATTTAAAGGCCGCCGTGGA
GAATATCCAGGCCATGTTTGCGGCCTATCTCCAGCAACAGCCCAGCCATC
CGGGTGTCACGGGCGACAATCACCACAGTCCCGAGTCAGATGGATCCTCA
TCGTCCTCGCGGAACACCAACGAGGAACCCAGTTGA
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Synonyms
The feature 'transcription factor partial' has the following synonyms
Synonym
Tk05506
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