rna polymerase ii largest partial, snap_masked-scaffold742_size103727-processed-gene-0.1 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of rna polymerase ii largest partial vs. L. salmonis genes
Match: EMLSAG00000008901 (supercontig:LSalAtl2s:LSalAtl2s554:55021:61089:-1 gene:EMLSAG00000008901 transcript:EMLSAT00000008901 description:"maker-LSalAtl2s554-augustus-gene-0.27") HSP 1 Score: 2255.33 bits (5843), Expect = 0.000e+0 Identity = 1097/1241 (88.40%), Postives = 1155/1241 (93.07%), Query Frame = 0
Query: 1 MQDLVRRGNSQYPGAKYIIRDTGERIDLRFHPKASDLHLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVMFLPTWDGKLPIPSIIKPKPFWTGKQLFTLIIPGNVNCQNFHATHPGSSENNGPYSWISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENGHLENGLFYGNIQTVINDWLLLEGHSIGIGDTIADPQTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGLAGEYVEFQNLKTIKLSDAVFKKKFKFDPTNERYARKLFTDEVLRDMVGSSEAVAEIEKEWEQLNDDRKSLRQIYPTGESKVVLPCNLERMIWNAQKIFHINKRHQTDLNPLKVIKGVRDLLKKCVIVRGEDKLSQQANDNATTLFQCLVRSTLCTKLVAETHRLTEEAFEWLLGEIESKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGTAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDQTRISPWLLRVELDRKRMTDKKLTMEHISERINAGFGDDLNCIFNDDNAEKLVLRIRIMNADDGKSEDDEQTDKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMHWPSTDEKKRIVITE-LGEFKAIAEWLLETDGTALMRVLSERDVDPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLLLDAEKCKYGIEIPMNVGGGGIMGGGGMFFGSAASPSAAMTPGMTPWAEGATPAYV--WSPTGSGMTPGGPGFSPSGQSDASGLSPGYSPAWSPQPGSPGSPAMSPYFPSPAHGGLSPSYSPSSPTYAPTSPGLASPTSPGYSPTSPQYSPTSPGYSPTSPNYSPTSP 1238
MQ+LVRRGNSQYPGAKYIIRDTGERIDLR+HPK+SDLHLQCGYKVERHI DGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAE+LNIHLTPRQII PQA KP MGIVQDTLTAVRKMTKRDVFL KE+MM LVMFLPTWDGKLPIP+IIKPKP WTGKQL TLIIPGN NC HATHP E NGPY WISPGDTRVLIE+G+L+MGILCKK+LG +AGSLLHVSQLENGH NG FYGNIQTV+N+WLLLEGHSIGIGDTIADPQTY DII+TI+KAKDEV EVI KAHSDELEATPGNTLRQTFEN+VNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGF KRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV YDGTVRNAVGQ+IQ YGEDGLAGE EFQ LKTI LS+ F+KKFKFDPTNERY RKLFTD+VLR+MVGS E VAEIE+EW QL DR++LRQI+PTG+ VVLPCNLERMIWNAQKIFHINKR TDL+PLKVI GVR+L+K+CVIVRG DKLS QANDNATTLFQCLVRSTLCTKLV+ETHRL+EEAFEWLLGEIESKF YAQ+TPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTG+AARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNT IAEDQEFVNVYYEMPDFDQ+RISPWLLR+ELDRKRMTDKKLTME ISE+INAGFGDDLNCIFNDDNAEKLVLRIRIMN+DD K D+EQ DKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMH PSTD+KKR++ITE GEFK+IAEWLLETDGTALMRVLSERDVD +RT+SNDICEIFS LGIEAVRKSVEKEI TVF+FYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPM+G+SENII+GQLPRMGTA+FDLLLDAEKCKYGIEIPMN GG+MGG G+FFGSAASPSA+MTPGMTPWA GATP YV W P GSGMTPGGPGFSPSGQSDASGLSP YS +WSPQP SPGSPAMSPY SP GG+SPS SPSSPTYAP SP LASPTSPGYSPTS Y+ TSPGYSPTS Y+ +SP
Sbjct: 425 MQELVRRGNSQYPGAKYIIRDTGERIDLRYHPKSSDLHLQCGYKVERHIRDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEILNIHLTPRQIITPQAXKPVMGIVQDTLTAVRKMTKRDVFLSKEEMMTLVMFLPTWDGKLPIPAIIKPKPLWTGKQLITLIIPGNTNCMRLHATHP-DEETNGPYHWISPGDTRVLIEHGELVMGILCKKSLGTAAGSLLHVSQLENGHEINGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYQDIINTIRKAKDEVTEVIQKAHSDELEATPGNTLRQTFENKVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFIKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVCYDGTVRNAVGQLIQLIYGEDGLAGEXXEFQTLKTISLSNHTFEKKFKFDPTNERYVRKLFTDDVLREMVGSPEVVAEIEREWTQLCKDREALRQIFPTGKKNVVLPCNLERMIWNAQKIFHINKRAPTDLSPLKVITGVRELVKRCVIVRGLDKLSTQANDNATTLFQCLVRSTLCTKLVSETHRLSEEAFEWLLGEIESKFFYAQSTPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGSAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTFIAEDQEFVNVYYEMPDFDQSRISPWLLRIELDRKRMTDKKLTMEQISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKDTDEEQADKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMHLPSTDDKKRMIITEQTGEFKSIAEWLLETDGTALMRVLSERDVDSIRTTSNDICEIFSALGIEAVRKSVEKEIFTVFNFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMKGISENIILGQLPRMGTASFDLLLDAEKCKYGIEIPMNA-AGGMMGGPGLFFGSAASPSASMTPGMTPWAAGATPGYVSAWXPPGSGMTPGGPGFSPSGQSDASGLSPRYS-SWSPQPNSPGSPAMSPYIASP--GGMSPSLSPSSPTYAPMSPSLASPTSPGYSPTS-GYNVTSPGYSPTSA-YNMSSP 1658 HSP 2 Score: 91.6633 bits (226), Expect = 1.305e-18 Identity = 71/113 (62.83%), Postives = 80/113 (70.80%), Query Frame = 0
Query: 1317 YSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPKSPGQSPVSPSYSPSSPKYSPTSPNYSPASPNYSPTSPNYSPTSPKYSPTSPTY 1429
YSPTSP+YSP+SP YSP+SP YSP SP YSPTSP TSP YSPTSP YSP SP SP+YSP+SP YSP+SPNYS +SP Y P+SP SP Y+PTSPTY
Sbjct: 1842 YSPTSPTYSPSSPKYSPSSPKYSPTSPQYSPTSP----TSPGYSPTSPQYSPTGNQ-------XSPTSPTYSPTSPTYSPSSPNYSTSSPTYMPSSPFSPAYSPSYAPTSPTY 1943
BLAST of rna polymerase ii largest partial vs. L. salmonis genes
Match: EMLSAG00000000277 (supercontig:LSalAtl2s:LSalAtl2s1041:91150:95596:1 gene:EMLSAG00000000277 transcript:EMLSAT00000000277 description:"augustus_masked-LSalAtl2s1041-processed-gene-0.11") HSP 1 Score: 361.303 bits (926), Expect = 1.550e-103 Identity = 203/513 (39.57%), Postives = 301/513 (58.67%), Query Frame = 0
Query: 1 MQDLVRRGNSQYPGAKYIIRDTGERIDLRFHPK-------ASDLHLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVMFL----PTWDGKLPIP--SIIKPKPFWTGKQLFTLIIPGNVNCQNFHATHPGSSENNGPYS---WISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENGHLENGLFYGNIQTVINDWLLL-EGHSIGIGDTIADPQTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGL 496
M+ L++ G +PGA ++ + + +R + K A DL + G VERH+ D D+V+FNRQPSLH++S+M H+ K+L TFR N +PYNADFDGDEMNLH+PQ+ E RAE L + ++ P+ + + QD +T +T ++ FLD+ ++ ++ + P D K+ IP +I+KP WTGKQ+F+L++ N + T S Y+ D+ VLI N +L+ G + K T+G+ S + L + + + I W L+ G SIGIGD ++K + E I + ++ L++T GN+ +T E+ + + L+ RDK G ++ +L + N M + GSKGS N+SQ+IACVGQQ + GKRIP GF R+ PHF + P ++GFVENS+ +GLTP+EF+FH MGGREGL+DTAVKTAETGY+QRRL+K++E ++ +YD TVRN+ +VIQF YG DGL
Sbjct: 405 MRKLIKNGPDIHPGANFVELKSKDGTTIRKYLKYGKRERIAQDLKI--GDLVERHMMDDDIVLFNRQPSLHRISIMCHRAKILEHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALVLMGNKSNLVTPRNGELLIAATQDFITGAYLLTSKETFLDRGKVCQIISQILASSPDDDIKIDIPPPAIMKPVQLWTGKQIFSLLLRPNKQVR----TKANLSAKGKTYTKDEEFCVNDSWVLIRNSELLAGAMDKSTVGSGTKSSIFYILLRDWGQDIACTAMWRLSRIASWFLMNRGFSIGIGDVTPSKSLLDSKKDLVEKGYNRCDEYISQLNAGTLQSTAGNSEEETLESLILKELSAIRDKAGKASLTALHKSNAPLTMALCGSKGSFXNISQMIACVGQQAISGKRIPDGFEDRSXPHFGRKSKIPAAKGFVENSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLVQHYDNTVRNSSNEVIQFVYGGDGL 911 HSP 2 Score: 115.931 bits (289), Expect = 4.731e-26 Identity = 59/142 (41.55%), Postives = 84/142 (59.15%), Query Frame = 0
Query: 932 EWLLETDGTALMRVLSERDVDPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLL 1073
++LL +G L VL+ + V T+SN+ CE+ LGIEA R ++ EI +G+ ++ RH+ LL D+MT +G ++ ITRHG+ + LM SFE+ D L DAA H + D +RGVSE IIMG +GT LL
Sbjct: 1200 KYLLFVEGDNLREVLATKGVKSSLTTSNNTCEVALTLGIEAARSTIMNEIQYTMQSHGMSIDRRHITLLADLMTCRGEVLGITRHGLAKMKESVLMLASFEKXSDHLFDAAYHGQKDAIRGVSECIIMGIPMPVGTGLMKLL 1341 HSP 3 Score: 112.849 bits (281), Expect = 3.864e-25 Identity = 67/143 (46.85%), Postives = 83/143 (58.04%), Query Frame = 0
Query: 655 AETH--RLTEEAFEWLLGEIESKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGTAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNV 795
E H RLT + + + K+ A PG VGA+ AQSIGEP TQMTL TFHFAGV+S N+TLGVPR+KEIIN SKK P + VFL D E A+ V R+E TTL +VT + PD +I D E + +
Sbjct: 999 VEKHIERLTLSQLVEFVEKCKEKYMKAAIEPGTAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKKISTPIIKVFLEDDT--DPEFARIVKGRIEKTTLGEVTEYLEEVFLPDDCLLLIKLDIERIKL 1139
BLAST of rna polymerase ii largest partial vs. L. salmonis genes
Match: EMLSAG00000006751 (supercontig:LSalAtl2s:LSalAtl2s378:546363:554008:1 gene:EMLSAG00000006751 transcript:EMLSAT00000006751 description:"maker-LSalAtl2s378-augustus-gene-5.27") HSP 1 Score: 281.952 bits (720), Expect = 5.145e-77 Identity = 185/554 (33.39%), Postives = 286/554 (51.62%), Query Frame = 0
Query: 1 MQDLVRRGNSQYPGAKYIIRDTGER--ID----LRFHPKASDL----------HLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWS-TFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVM-FLPTWDGKLPI--PSIIKPKPFWTGKQLFTLII-----PGNVNCQNFHATHPGSSE--NNGPYSW-------------ISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENGHLENGLFYGNIQTVINDWLLLEGHSIGIGDTIADP---QTYADIISTIKKAKDEVIE--VIHKAHSDELEATPGNTLRQTFENQVNRILNDA--RDKTGGSAKRS---------LTEF--NNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGL 496
+++LV G + +PGA +I ++G+R ID ++ A L ++ Y RH+ +GD ++ NRQP+LHK S+M H+ +VL R++ + YNADFDGDEMN H PQ+ R+E N+ Q + P+ P G++QD + A KM+ R F D+ + LV L GK+ P+I KPK W+GKQ+ + II PG + F T SS+ N P W S ++ V+ NG+L+ G++ K GA+ SL+H G + + ++L EG ++G+ D + + +I+ +K DE V A+ L + R++++ R+ D +++ G R + +F NN ++MV AG+KGS +N Q+ +GQ +EGKR P R+LP F+ D P + GF++ ++ G+ P EF+FH M GREGLIDTAVKT+ +GY+QR LIK +E ++VNYD TVR++ G V+QF+YGED L
Sbjct: 460 LRELVINGPNVHPGALFIETESGQRKMIDGNDPIQREALAKTLLTPSSDPGEDKMKFVY---RHLINGDRMLLNRQPTLHKPSIMSHRARVLKGEKVMRLHYAVCKSYNADFDGDEMNAHFPQNEVARSEAQNLVGVSEQYLVPKDGTPLQGLIQDHVIAGVKMSIRGRFFDQAEYQQLVYSALINVKGKIKCLPPAIFKPKKLWSGKQIISTIILNSIPPGRESVTLFSKTKIKSSDWLNQNPRPWKTSRLGSHSVKKGCSMCESEVIFSNGELVCGVIDKNQYGATMYSLVHTFYELYGGTSSSELLSAFSRIFTNFLHTEGFTLGVSDILVQSDANENREEIMKQLKNIGDECATSGVSLNANLGSLNSELRRFHRESYKAPQKRMKVDKGYKERLGPMTNRINSACLPRGLIKKFPENNLQLMVQAGAKGSTVNTMQISCLLGQIELEGKRPPIMISGRSLPSFLPYDTQPRAGGFIDGRFMTGIKPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVVNYDLTVRDSDGSVVQFQYGEDSL 1010 HSP 2 Score: 81.6481 bits (200), Expect = 1.450e-15 Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 0
Query: 674 SKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI-SKKPKAPSLTV-FLTGTAARDAEKAKNVLCR 760
+K+ + PGE VG +A QS+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S K PS + FL + +K + L R
Sbjct: 1175 AKYMKSMVDPGEPVGVLAGQSVGEPSTQMTLNTFHFAGCGEMNVTLGIPRLREILMVASSNIKTPSSVIHFLPHVLESEKDKLRIKLNR 1263 HSP 3 Score: 67.0106 bits (162), Expect = 4.646e-11 Identity = 53/190 (27.89%), Postives = 88/190 (46.32%), Query Frame = 0
Query: 889 ANMLSDMTLQG----LEAISKVYMHWPSTDEKKRIVITELGEFKAIAEWLLETDGTALMRVLSERDV-DPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLL 1073
+N++ ++G ++ I+K Y+ + DE + IT TDG + + D+ D R N I ++ GIEA +++ EI VF YGI +N+RHL L+ D MT G R GI + L + +FE + L A + D ++ S II+G+ GT++F ++
Sbjct: 1509 SNLIKTAAVKGVIYEIKNINKAYL---TKDENEETTIT--------------TDGINIEAMFQFDDLLDINRLRCNSIHDMARYYGIEAANRTITSEIVNVFKAYGITINHRHLTLIADYMTFDGSYKPFNRVGI-ENNPSPLQQMTFETAIGFLRSATIQGKKDNLQSPSSCIILGKPWFGGTSSFKIM 1680
BLAST of rna polymerase ii largest partial vs. L. salmonis genes
Match: EMLSAG00000005963 (supercontig:LSalAtl2s:LSalAtl2s321:818470:836551:1 gene:EMLSAG00000005963 transcript:EMLSAT00000005963 description:"maker-LSalAtl2s321-augustus-gene-8.27") HSP 1 Score: 55.8398 bits (133), Expect = 9.411e-8 Identity = 39/121 (32.23%), Postives = 56/121 (46.28%), Query Frame = 0
Query: 1228 PTSPNYSPTS------PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTS---PSYSPTSPSY 1338
PT NY +S P+Y P+Y P Y P+Y+ P+Y P+Y P+Y P+Y P+Y+ P+Y P+Y P Y P+Y +P+S PSY+ S SY
Sbjct: 146 PTHSNYQVSSHQAHHKPTYGAPKPTYDAPQPIYGAPKPTYNSPKPTYDAPKPTYGAPEPTYDAPKPTYGAPKPTYNSPKPTYGAPKPTYGAPKPIYKAPKPTYGAPSSYGAPSYNAPSSSY 266 HSP 2 Score: 55.4546 bits (132), Expect = 1.387e-7 Identity = 38/125 (30.40%), Postives = 55/125 (44.00%), Query Frame = 0
Query: 1232 NYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPASPSYSPTSPSY 1352
N PT +Y S + P+Y P+Y P Y P+Y+ P+Y P+Y P+Y P+Y P+Y+ P+Y P+Y P Y P+Y S +PSY+ S SY
Sbjct: 143 NSGPTHSNYQ-VSSHQAHHKPTYGAPKPTYDAPQPIYGAPKPTYNSPKPTYDAPKPTYGAPEPTYDAPKPTYGAPKPTYNSPKPTYGAPKPTYGAPKPIYKAPKPTYGAPSSYGAPSYNAPSSSY 266 HSP 3 Score: 54.6842 bits (130), Expect = 2.283e-7 Identity = 41/128 (32.03%), Postives = 51/128 (39.84%), Query Frame = 0
Query: 1407 NYSPTSPNYSPTS------PKYSPTSPTYSPASPKYSPSSPKYSPSSPQYSPSSPQYSNTSPQYSPSSPQYSPTSPTYSPTSPNYSPTSPQYSPASPTYS---PTAGSSYSPTSPTYSPASPSYDTEE 1525
N PT NY +S P Y PTY P Y P Y+ P Y P Y P Y P Y PTY+ P Y P Y P Y PT G+ S +P+Y+ S SY +++
Sbjct: 143 NSGPTHSNYQVSSHQAHHKPTYGAPKPTYDAPQPIYGAPKPTYNSPKPTYDAPKPTYGAPEPTYDAPKPTYGAPKPTYNSPKPTYGAPKPTYGAPKPIYKAPKPTYGAPSSYGAPSYNAPSSSYGSQD 270 HSP 4 Score: 54.299 bits (129), Expect = 3.254e-7 Identity = 38/121 (31.40%), Postives = 56/121 (46.28%), Query Frame = 0
Query: 1249 PTSPSYSPTS------PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSY-SPTS---PSYSPTSPSY 1359
PT +Y +S P+Y P+Y P Y P+Y+ P+Y P+Y P+Y P+Y P+Y+ P+Y P+Y P Y P+Y +P+S PSY+ S SY
Sbjct: 146 PTHSNYQVSSHQAHHKPTYGAPKPTYDAPQPIYGAPKPTYNSPKPTYDAPKPTYGAPEPTYDAPKPTYGAPKPTYNSPKPTYGAPKPTYGAPKPIYKAPKPTYGAPSSYGAPSYNAPSSSY 266 HSP 5 Score: 54.299 bits (129), Expect = 3.254e-7 Identity = 38/121 (31.40%), Postives = 56/121 (46.28%), Query Frame = 0
Query: 1256 PTSPSYSPTS------PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSPSY-SPTS---PSYSPTSPSY 1366
PT +Y +S P+Y P+Y P Y P+Y+ P+Y P+Y P+Y P+Y P+Y+ P+Y P+Y P Y P+Y +P+S PSY+ S SY
Sbjct: 146 PTHSNYQVSSHQAHHKPTYGAPKPTYDAPQPIYGAPKPTYNSPKPTYDAPKPTYGAPEPTYDAPKPTYGAPKPTYNSPKPTYGAPKPTYGAPKPIYKAPKPTYGAPSSYGAPSYNAPSSSY 266 HSP 6 Score: 52.7582 bits (125), Expect = 8.732e-7 Identity = 38/125 (30.40%), Postives = 56/125 (44.80%), Query Frame = 0
Query: 1277 PTSPSYSPTS------PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPASPSY-SPKSPGQSPVSPSYSPSSPKY 1394
PT +Y +S P+Y P+Y P Y P+Y+ P+Y P+Y P+Y P+Y P+Y+ P+Y P+Y P Y P+Y +P S G +PSY+ S Y
Sbjct: 146 PTHSNYQVSSHQAHHKPTYGAPKPTYDAPQPIYGAPKPTYNSPKPTYDAPKPTYGAPEPTYDAPKPTYGAPKPTYNSPKPTYGAPKPTYGAPKPIYKAPKPTYGAPSSYG----APSYNAPSSSY 266
BLAST of rna polymerase ii largest partial vs. SwissProt
Match: gi|14286163|sp|P04052.4|RPB1_DROME (RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA polymerase II subunit B1; AltName: Full=DNA-directed RNA polymerase III largest subunit) HSP 1 Score: 2169.43 bits (5620), Expect = 0.000e+0 Identity = 1084/1495 (72.51%), Postives = 1215/1495 (81.27%), Query Frame = 0
Query: 1 MQDLVRRGNSQYPGAKYIIRDTGERIDLRFHPKASDLHLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVMFLPTWDGKLPIPSIIKPKPFWTGKQLFTLIIPGNVNCQNFHATHPGSSENNGPYSWISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENGHLENGLFYGNIQTVINDWLLLEGHSIGIGDTIADPQTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGLAGEYVEFQNLKTIKLSDAVFKKKFKFDPTNERYARKLFTDEVLRDMVGSSEAVAEIEKEWEQLNDDRKSLRQIYPTGESKVVLPCNLERMIWNAQKIFHINKRHQTDLNPLKVIKGVRDLLKKCVIVRGEDKLSQQANDNATTLFQCLVRSTLCTKLVAETHRLTEEAFEWLLGEIESKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGTAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDQTRISPWLLRVELDRKRMTDKKLTMEHISERINAGFGDDLNCIFNDDNAEKLVLRIRIMNADDGKSED-DEQTDKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMHWPSTDEKKRIVITELGEFKAIAEWLLETDGTALMRVLSERDVDPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLLLDAEKCKYGIEIPMNVGGGGIMGGGGMFFGSAASPSAAMTPGMTPWAEGATPAYVWSPTG--SGMTPGGPGFSPSGQSDASGLSPGYSPAWSPQPGSPGSPAMSPYFP-----------------SPAHGGLSPSYSPSSPTYAPTSPGLASP----TSPGYSPTSPQ--------------YSPT-----SPGYSPTSPN-YSPTSP----------------------------------SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----------------SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP------SYSPTSPSYSPTSPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPKSPGQ-SPVSPSYSPSSPKY 1394
MQ+LVRRGNSQYPGAKYI+RD GERIDLRFHPK+SDLHLQCGYKVERH+ D DLV+FNRQP+LHKMSMMGH+VKVLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAEV NIH+TPRQII PQANKP MGIVQDTLTAVRKMTKRDVF+ +EQ+MNL+MFLPTWD K+P P I+KP+P WTGKQ+F+LIIPGNVN H+THP E+ GPY WISPGDT+V++E+G+LIMGILCKK+LG SAGSLLH+ LE GH G FYGNIQTVIN+WLL EGHSIGIGDTIADPQTY +I IKKAKD+VI VI KAH+ ELE TPGNTLRQTFEN+VNRILNDARDKTGGSAK+SLTE+NN K MVV+GSKGS+IN+SQVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRN+VGQ+IQ RYGEDGL GE VEFQN+ T+KLS+ F+K+FKFD +NER +K+FTD+V+++M SSEA+ E+E EW++L DR SLRQI+P GESKVVLPCNL+RMIWN QKIFHINKR TDL+P++VIKGV+ LL++CVIV G D++S+QAN+NAT LFQCL+RSTLCTK V+E RL+ EAFEWL+GEIE++F AQA PGEMVGA+AAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTG AARDAEKAKNVLCRLEHTTL+KVTANTAIYYDPDPQ TVI+EDQEFVNVYYEMPDFD TRISPWLLR+ELDRKRMTDKKLTME I+E+IN GFG+DLNCIFNDDNA+KLVLRIRIMN ++ K +D DE DKMEDDMFLRCIEANMLSDMTLQG+EAI KVYMH P TD KKRIVITE GEFKAI EWLLETDGT++M+VLSERDVDP+RTSSNDICEIF VLGIEAVRKSVEKE+N V FYG+YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLP+MGT FDLLLDAEKC++GIEIP N G ++GG MF G ++PS MTP MTPWA TP Y +SP G S MTPGGP FSPS SDASG+SP +SPA S P+MSPYFP + + GG SP+YSPSSP Y+PTSP ASP T+P ++P S YSPT SP ++ + N YSP + YSPTSPSYSPTSP+Y+P +PSYSPTSP+YS SP YSP SP+YS T Y SP SP Y+P SP YSP SP YSPTSP YSP+SP YSPT +YS TSP YSP YSP+S YSPTSP+Y+PT+ +YSP SP YSP +P SP SP+YSPSSP +
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHP-DEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNERLMKKVFTDDVIKEMTDSSEAIQELEAEWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIP-NTLGNSMLGGAAMFIGGGSTPS--MTPPMTPWANCNTPRY-FSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPTAPSHYSPTSPAYSPSSPTF 1882 HSP 2 Score: 203.371 bits (516), Expect = 3.021e-51 Identity = 181/395 (45.82%), Postives = 232/395 (58.73%), Query Frame = 0
Query: 1200 TSPGLASPTSPGYSPTSPQY-SPTSPGY----SPTSPNYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPT-----SPSYSPT-SPSYSPTSP----------------------------------SYSPASPSYSPKSPGQSPVSPSYSPSSPKYSPTSPNYSPASPNYSPTS----------------PNYSPTSPKYSPTSPTYSPASPKYSPSSPKYSPSSP------QYSPSSPQYSNTSPQYSPSSPQYSPTSPTYSPTSPNYSPTSPQYSPASPTYSPTAGSSYSPTSPTYSPASPSYDTEED 1526
++P + P +P + +P+Y SP PG+ +P P++SP++ S S SPS+SP P SP+SP S + + S S S + S + T+ S SP+YSP+SP+YSPTSP Y+ SP Y+ T+P+++P S YSP+S YSP SP YSPT SPS++ + S YSP + YSP SPSYSP SP +PV+PSYSP+SP YS SP YSPASP YS T + SP SP+Y+P SP YSPASPKYSP+SP YSPSSP QYSP+ YS TSP+YSP+ YSP+S YSPTSP Y+PT+ YSP SP YSPTA S YSPTSP YSP+SP+++ ED
Sbjct: 1498 STPSMTPPMTPWANCNTPRYFSP--PGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYA--SPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPTAPSHYSPTSPAYSPSSPTFEESED 1887
BLAST of rna polymerase ii largest partial vs. SwissProt
Match: gi|281185484|sp|P24928.2|RPB1_HUMAN (RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA polymerase II subunit B1; AltName: Full=DNA-directed RNA polymerase II subunit A; AltName: Full=DNA-directed RNA polymerase III largest subunit; AltName: Full=RNA-directed RNA polymerase II subunit RPB1) HSP 1 Score: 1896.71 bits (4912), Expect = 0.000e+0 Identity = 888/1218 (72.91%), Postives = 1048/1218 (86.04%), Query Frame = 0
Query: 1 MQDLVRRGNSQYPGAKYIIRDTGERIDLRFHPKASDLHLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVMFLPTWDGKLPIPSIIKPKPFWTGKQLFTLIIPGNVNCQNFHATHPGSSENNGPYSWISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENGHLENGLFYGNIQTVINDWLLLEGHSIGIGDTIADPQTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGLAGEYVEFQNLKTIKLSDAVFKKKFKFDPTNERYARKLFTDEVLRDMVGSSEAVAEIEKEWEQLNDDRKSLRQIYPTGESKVVLPCNLERMIWNAQKIFHINKRHQTDLNPLKVIKGVRDLLKKCVIVRGEDKLSQQANDNATTLFQCLVRSTLCTKLVAETHRLTEEAFEWLLGEIESKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGTAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDQTRISPWLLRVELDRKRMTDKKLTMEHISERINAGFGDDLNCIFNDDNAEKLVLRIRIMNADDGK-SEDDEQTDKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMHWPSTDEKKRIVITELGEFKAIAEWLLETDGTALMRVLSERDVDPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLLLDAEKCKYGIEIPMNVGGGGIMGGGGMFFGSAASPSAAMTPGMTPWAEGATPAY-VWSPT-GSGMTPGGPGFSPSGQSDASGLSPGYSPAW-SPQPGSPGSPAMSPYFPSPAHGGLSPSYSPSSPTYAPTSPGLASPTSPGYSP 1214
+Q+LVRRGNSQYPGAKYIIRD G+RIDLRFHPK SDLHLQ GYKVERH+ DGD+V+FNRQP+LHKMSMMGH+V++LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE+ + + PR I+ PQ+N+P MGIVQDTLTAVRK TKRDVFL++ ++MNL+MFL TWDGK+P P+I+KP+P WTGKQ+F+LIIPG++NC H+THP E++GPY ISPGDT+V++ENG+LIMGILCKK+LG SAGSL+H+S LE GH LFY NIQTVIN+WLL+EGH+IGIGD+IAD +TY DI +TIKKAK +VIEVI KAH++ELE TPGNTLRQTFENQVNRILNDARDKTG SA++SL+E+NNFK MVV+G+KGS IN+SQVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EF+FHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVMV YD TVRN++ QV+Q RYGEDGLAGE VEFQNL T+K S+ F+KKF+FD TNER R+ +++++D++ ++ E+E+E+E++ +DR+ LR I+PTG+SKVVLPCNL RMIWNAQKIFHIN R +DL+P+KV++GV++L KK VIV G+D LS+QA +NAT LF +RSTLC++ +AE RL+ EAF+WLLGEIESKFN A A PGEMVGA+AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVFL G +ARDAE+AK++LCRLEHTTL+KVTANTAIYYDP+PQ+TV+AEDQE+VNVYYEMPDFD RISPWLLRVELDRK MTD+KLTME I+E+INAGFGDDLNCIFNDDNAEKLVLRIRIMN+D+ K E++E DKM+DD+FLRCIE+NML+DMTLQG+E ISKVYMH P TD KK+I+ITE GEFKA+ EW+LETDG +LMRVLSE+DVDPVRT+SNDI EIF+VLGIEAVRK++E+E+ V SF G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDVLM+AA+H E DPM+GVSENI++GQL GT FDLLLDAEKCKYG+EIP N+ G G G GMFFGSA SP ++P MTPW +GATPAY WSP+ GSGMTPG GFSPS SDASG SPGYSPAW SPY PSP G +SPSYSP+SP Y P SPG GY+P
Sbjct: 402 LQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHP-DDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPG-GAMSPSYSPTSPAYEPRSPG-------GYTP 1610 HSP 2 Score: 174.866 bits (442), Expect = 1.894e-42 Identity = 88/112 (78.57%), Postives = 99/112 (88.39%), Query Frame = 0
Query: 1218 QYSPTSPGYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1326
+Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPTSP+YSPTSP YSPTSP+YSPTSP +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1852 EYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 3 Score: 172.94 bits (437), Expect = 7.599e-42 Identity = 87/111 (78.38%), Postives = 97/111 (87.39%), Query Frame = 0
Query: 1240 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPASPSYSP 1347
Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPTSP+YSPTSP YSPTSP+YSPTSP +YSPTSP YSPTSP+YS SP+ SP
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 4 Score: 172.94 bits (437), Expect = 7.599e-42 Identity = 87/111 (78.38%), Postives = 97/111 (87.39%), Query Frame = 0
Query: 1261 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASP---SYSPTSPSYSPTSPSYSPTSPSYSP 1368
Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPTSP+YSPTSP YSPTSP+YSP SP +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 5 Score: 167.933 bits (424), Expect = 2.554e-40 Identity = 85/111 (76.58%), Postives = 94/111 (84.68%), Query Frame = 0
Query: 1275 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSPSYSPTSP---SYSPTSPSYSPASPSYSPKSPGQSP 1382
Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPTSP+YSP SP YSPTSP+YSPTSP +YSPTSP YSP SP+YS SP SP
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 6 Score: 161.384 bits (407), Expect = 2.232e-38 Identity = 122/188 (64.89%), Postives = 136/188 (72.34%), Query Frame = 0
Query: 1226 YSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-----------------------------------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSP---SYSPTSPSYSPTSPSYSPASPSYSP 1375
Y+PTSPNYSPTSPSYSPTSPSYSPTSPSYSP+SP Y+P +SP Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPTSP+YSPTSP YSP SP+YSPTSP +YSPTSP YSPTSP+YS SP+ SP
Sbjct: 1776 YTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPASPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 7 Score: 160.229 bits (404), Expect = 5.291e-38 Identity = 120/188 (63.83%), Postives = 135/188 (71.81%), Query Frame = 0
Query: 1212 YSPTSPQYSPTSPGYSPTSPNYSPTSPSYSPTSPSYSP-----------------------------------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPASPSYSPTSPSYSPTSPSYSP 1361
Y+PTSP YSPTSP YSPTSP+YSPTSPSYSP+SP Y+P +SP Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPTSP+YSPTSP YSPTSP+YSPTSP +YSP SP YSPTSP+YS TSP+ SP
Sbjct: 1776 YTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPASPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 8 Score: 144.05 bits (362), Expect = 5.027e-33 Identity = 78/108 (72.22%), Postives = 88/108 (81.48%), Query Frame = 0
Query: 1180 SPAHGGLSPSYSPSSPTYAPTSPGLASPTSPGYSPTSPQYSPTSPGYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1284
SP + SP YSP+SP Y+PTSP SPT+P YSPTSP YSPTSP Y+PTSP YSPTSP+YSPTSP YSPTSP+YSPTSP +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1857 SPKYSPTSPKYSPTSPKYSPTSPTY-SPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 9 Score: 139.043 bits (349), Expect = 1.516e-31 Identity = 178/256 (69.53%), Postives = 197/256 (76.95%), Query Frame = 0
Query: 1239 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS----------------------------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPKSPGQSPVSPSYSPSSPKYSPTSPNYSPASPNYSPTSPNYSPTSPKYSPTSPTYSPASPKYSPSSPKYSPSSPQYSPSSPQYSNTSPQYSP 1466
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+Y+PTSPSYSPTSPSYSPTSP+Y+PTSP+ Y+P SP+Y+P+SPSYSP+SPSYSP SP Y+P SPSYSP+SP Y+PTSP YSPTSP YSP SP YSP SP SP +P YSP+SP YSPTSP Y+P SP YSPTSP YSPTSPKYSPTSPTYSP SPK S YSP+SP YSP+SP YS TSP SP
Sbjct: 1712 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPASPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 10 Score: 118.242 bits (295), Expect = 3.148e-25 Identity = 74/112 (66.07%), Postives = 84/112 (75.00%), Query Frame = 0
Query: 1155 SPGYSPAWSPQPGSPGSPAMSPYFPSPAHGGLSPSYSPSSPTYAPTSPGLASPTSPGYSPTSPQYSPTSPGYSPTSPNYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1263
SP YSP SP+ SP SP SP SP + +P YSP+SPTY+PTSP + +PTSP YSPTSP YSPTSP YSPTSP YSPTSP +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1857 SPKYSPT-SPK-YSPTSPKYSP--TSPTYSPTTPKYSPTSPTYSPTSP-VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 11 Score: 91.2781 bits (225), Expect = 5.917e-17 Identity = 65/117 (55.56%), Postives = 76/117 (64.96%), Query Frame = 0
Query: 1129 WSPTGSGMTPGGPGFSPSGQSDASGLSPGYSPAWSPQPGSPGSPAMSPYFPSPAHGGLSPSYSPSSPTYAPTSPGLASPTSPGYSPTSPQ---YSPTSPGYSPTSPNYSPTSPSYSP 1242
+SPT +P P +SP+ SP YSP +P+ SP SP SP SP + SP YSP+SPTY+PTSP SPTSP YSPTSP+ YSPTSPGYSPTSP YS TSP+ SP
Sbjct: 1860 YSPTSPKYSPTSPKYSPT--------SPTYSPT-TPK-YSPTSPTYSP--TSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963
BLAST of rna polymerase ii largest partial vs. SwissProt
Match: gi|1209676884|sp|P11414.2|RPB1_CRIGR (RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA polymerase II subunit B1; AltName: Full=DNA-directed RNA polymerase II subunit A; AltName: Full=DNA-directed RNA polymerase III largest subunit) HSP 1 Score: 1896.71 bits (4912), Expect = 0.000e+0 Identity = 888/1218 (72.91%), Postives = 1048/1218 (86.04%), Query Frame = 0
Query: 1 MQDLVRRGNSQYPGAKYIIRDTGERIDLRFHPKASDLHLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVMFLPTWDGKLPIPSIIKPKPFWTGKQLFTLIIPGNVNCQNFHATHPGSSENNGPYSWISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENGHLENGLFYGNIQTVINDWLLLEGHSIGIGDTIADPQTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGLAGEYVEFQNLKTIKLSDAVFKKKFKFDPTNERYARKLFTDEVLRDMVGSSEAVAEIEKEWEQLNDDRKSLRQIYPTGESKVVLPCNLERMIWNAQKIFHINKRHQTDLNPLKVIKGVRDLLKKCVIVRGEDKLSQQANDNATTLFQCLVRSTLCTKLVAETHRLTEEAFEWLLGEIESKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGTAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDQTRISPWLLRVELDRKRMTDKKLTMEHISERINAGFGDDLNCIFNDDNAEKLVLRIRIMNADDGK-SEDDEQTDKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMHWPSTDEKKRIVITELGEFKAIAEWLLETDGTALMRVLSERDVDPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLLLDAEKCKYGIEIPMNVGGGGIMGGGGMFFGSAASPSAAMTPGMTPWAEGATPAY-VWSPT-GSGMTPGGPGFSPSGQSDASGLSPGYSPAW-SPQPGSPGSPAMSPYFPSPAHGGLSPSYSPSSPTYAPTSPGLASPTSPGYSP 1214
+Q+LVRRGNSQYPGAKYIIRD G+RIDLRFHPK SDLHLQ GYKVERH+ DGD+V+FNRQP+LHKMSMMGH+V++LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE+ + + PR I+ PQ+N+P MGIVQDTLTAVRK TKRDVFL++ ++MNL+MFL TWDGK+P P+I+KP+P WTGKQ+F+LIIPG++NC H+THP E++GPY ISPGDT+V++ENG+LIMGILCKK+LG SAGSL+H+S LE GH LFY NIQTVIN+WLL+EGH+IGIGD+IAD +TY DI +TIKKAK +VIEVI KAH++ELE TPGNTLRQTFENQVNRILNDARDKTG SA++SL+E+NNFK MVV+G+KGS IN+SQVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EF+FHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVMV YD TVRN++ QV+Q RYGEDGLAGE VEFQNL T+K S+ F+KKF+FD TNER R+ +++++D++ ++ E+E+E+E++ +DR+ LR I+PTG+SKVVLPCNL RMIWNAQKIFHIN R +DL+P+KV++GV++L KK VIV G+D LS+QA +NAT LF +RSTLC++ +AE RL+ EAF+WLLGEIESKFN A A PGEMVGA+AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVFL G +ARDAE+AK++LCRLEHTTL+KVTANTAIYYDP+PQ+TV+AEDQE+VNVYYEMPDFD RISPWLLRVELDRK MTD+KLTME I+E+INAGFGDDLNCIFNDDNAEKLVLRIRIMN+D+ K E++E DKM+DD+FLRCIE+NML+DMTLQG+E ISKVYMH P TD KK+I+ITE GEFKA+ EW+LETDG +LMRVLSE+DVDPVRT+SNDI EIF+VLGIEAVRK++E+E+ V SF G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDVLM+AA+H E DPM+GVSENI++GQL GT FDLLLDAEKCKYG+EIP N+ G G G GMFFGSA SP ++P MTPW +GATPAY WSP+ GSGMTPG GFSPS SDASG SPGYSPAW SPY PSP G +SPSYSP+SP Y P SPG GY+P
Sbjct: 402 LQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHP-DDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPG-GAMSPSYSPTSPAYEPRSPG-------GYTP 1610 HSP 2 Score: 174.866 bits (442), Expect = 1.894e-42 Identity = 88/112 (78.57%), Postives = 99/112 (88.39%), Query Frame = 0
Query: 1218 QYSPTSPGYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1326
+Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPTSP+YSPTSP YSPTSP+YSPTSP +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1852 EYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 3 Score: 172.94 bits (437), Expect = 7.599e-42 Identity = 87/111 (78.38%), Postives = 97/111 (87.39%), Query Frame = 0
Query: 1240 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPASPSYSP 1347
Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPTSP+YSPTSP YSPTSP+YSPTSP +YSPTSP YSPTSP+YS SP+ SP
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 4 Score: 172.94 bits (437), Expect = 7.599e-42 Identity = 87/111 (78.38%), Postives = 97/111 (87.39%), Query Frame = 0
Query: 1261 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASP---SYSPTSPSYSPTSPSYSPTSPSYSP 1368
Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPTSP+YSPTSP YSPTSP+YSP SP +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 5 Score: 167.933 bits (424), Expect = 2.554e-40 Identity = 85/111 (76.58%), Postives = 94/111 (84.68%), Query Frame = 0
Query: 1275 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSPSYSPTSP---SYSPTSPSYSPASPSYSPKSPGQSP 1382
Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPTSP+YSP SP YSPTSP+YSPTSP +YSPTSP YSP SP+YS SP SP
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 6 Score: 161.384 bits (407), Expect = 2.232e-38 Identity = 122/188 (64.89%), Postives = 136/188 (72.34%), Query Frame = 0
Query: 1226 YSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-----------------------------------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSP---SYSPTSPSYSPTSPSYSPASPSYSP 1375
Y+PTSPNYSPTSPSYSPTSPSYSPTSPSYSP+SP Y+P +SP Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPTSP+YSPTSP YSP SP+YSPTSP +YSPTSP YSPTSP+YS SP+ SP
Sbjct: 1776 YTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 7 Score: 160.229 bits (404), Expect = 5.291e-38 Identity = 120/188 (63.83%), Postives = 135/188 (71.81%), Query Frame = 0
Query: 1212 YSPTSPQYSPTSPGYSPTSPNYSPTSPSYSPTSPSYSP-----------------------------------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPASPSYSPTSPSYSPTSPSYSP 1361
Y+PTSP YSPTSP YSPTSP+YSPTSPSYSP+SP Y+P +SP Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPTSP+YSPTSP YSPTSP+YSPTSP +YSP SP YSPTSP+YS TSP+ SP
Sbjct: 1776 YTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 8 Score: 144.05 bits (362), Expect = 5.027e-33 Identity = 78/108 (72.22%), Postives = 88/108 (81.48%), Query Frame = 0
Query: 1180 SPAHGGLSPSYSPSSPTYAPTSPGLASPTSPGYSPTSPQYSPTSPGYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1284
SP + SP YSP+SP Y+PTSP SPT+P YSPTSP YSPTSP Y+PTSP YSPTSP+YSPTSP YSPTSP+YSPTSP +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1857 SPKYSPTSPKYSPTSPKYSPTSPTY-SPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 9 Score: 139.043 bits (349), Expect = 1.516e-31 Identity = 179/256 (69.92%), Postives = 198/256 (77.34%), Query Frame = 0
Query: 1239 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS----------------------------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPKSPGQSPVSPSYSPSSPKYSPTSPNYSPASPNYSPTSPNYSPTSPKYSPTSPTYSPASPKYSPSSPKYSPSSPQYSPSSPQYSNTSPQYSP 1466
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+Y+PTSPSYSPTSPSYSPTSP+Y+PTSP+ Y+P SP+Y+P+SPSYSP+SPSYSPTSP Y+P SPSYSP+SP Y+PTSP YSPTSP YSP SP YSP SP SP +P YSP+SP YSPTSP Y+P SP YSPTSP YSPTSPKYSPTSPTYSP SPK S YSP+SP YSP+SP YS TSP SP
Sbjct: 1712 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 10 Score: 118.242 bits (295), Expect = 3.148e-25 Identity = 74/112 (66.07%), Postives = 84/112 (75.00%), Query Frame = 0
Query: 1155 SPGYSPAWSPQPGSPGSPAMSPYFPSPAHGGLSPSYSPSSPTYAPTSPGLASPTSPGYSPTSPQYSPTSPGYSPTSPNYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1263
SP YSP SP+ SP SP SP SP + +P YSP+SPTY+PTSP + +PTSP YSPTSP YSPTSP YSPTSP YSPTSP +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1857 SPKYSPT-SPK-YSPTSPKYSP--TSPTYSPTTPKYSPTSPTYSPTSP-VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963
BLAST of rna polymerase ii largest partial vs. SwissProt
Match: gi|133327|sp|P08775.3|RPB1_MOUSE (RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA polymerase II subunit B1; AltName: Full=DNA-directed RNA polymerase II subunit A; AltName: Full=DNA-directed RNA polymerase III largest subunit) HSP 1 Score: 1896.32 bits (4911), Expect = 0.000e+0 Identity = 888/1218 (72.91%), Postives = 1048/1218 (86.04%), Query Frame = 0
Query: 1 MQDLVRRGNSQYPGAKYIIRDTGERIDLRFHPKASDLHLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVMFLPTWDGKLPIPSIIKPKPFWTGKQLFTLIIPGNVNCQNFHATHPGSSENNGPYSWISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENGHLENGLFYGNIQTVINDWLLLEGHSIGIGDTIADPQTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGLAGEYVEFQNLKTIKLSDAVFKKKFKFDPTNERYARKLFTDEVLRDMVGSSEAVAEIEKEWEQLNDDRKSLRQIYPTGESKVVLPCNLERMIWNAQKIFHINKRHQTDLNPLKVIKGVRDLLKKCVIVRGEDKLSQQANDNATTLFQCLVRSTLCTKLVAETHRLTEEAFEWLLGEIESKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGTAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDQTRISPWLLRVELDRKRMTDKKLTMEHISERINAGFGDDLNCIFNDDNAEKLVLRIRIMNADDGK-SEDDEQTDKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMHWPSTDEKKRIVITELGEFKAIAEWLLETDGTALMRVLSERDVDPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLLLDAEKCKYGIEIPMNVGGGGIMGGGGMFFGSAASPSAAMTPGMTPWAEGATPAY-VWSPT-GSGMTPGGPGFSPSGQSDASGLSPGYSPAW-SPQPGSPGSPAMSPYFPSPAHGGLSPSYSPSSPTYAPTSPGLASPTSPGYSP 1214
+Q+LVRRGNSQYPGAKYIIRD G+RIDLRFHPK SDLHLQ GYKVERH+ DGD+V+FNRQP+LHKMSMMGH+V++LPWSTFR+NLS T+PYNADFDGDEMNLH+PQS+ETRAE+ + + PR I+ PQ+N+P MGIVQDTLTAVRK TKRDVFL++ ++MNL+MFL TWDGK+P P+I+KP+P WTGKQ+F+LIIPG++NC H+THP E++GPY ISPGDT+V++ENG+LIMGILCKK+LG SAGSL+H+S LE GH LFY NIQTVIN+WLL+EGH+IGIGD+IAD +TY DI +TIKKAK +VIEVI KAH++ELE TPGNTLRQTFENQVNRILNDARDKTG SA++SL+E+NNFK MVV+G+KGS IN+SQVIA VGQQNVEGKRIPFGF+ RTLPHFIKDDYGPESRGFVENSYLAGLTP+EF+FHAMGGREGLIDTAVKTAETGYIQRRLIK+MESVMV YD TVRN++ QV+Q RYGEDGLAGE VEFQNL T+K S+ F+KKF+FD TNER R+ +++++D++ ++ E+E+E+E++ +DR+ LR I+PTG+SKVVLPCNL RMIWNAQKIFHIN R +DL+P+KV++GV++L KK VIV G+D LS+QA +NAT LF +RSTLC++ +AE RL+ EAF+WLLGEIESKFN A A PGEMVGA+AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRLKE+INISKKPK PSLTVFL G +ARDAE+AK++LCRLEHTTL+KVTANTAIYYDP+PQ+TV+AEDQE+VNVYYEMPDFD RISPWLLRVELDRK MTD+KLTME I+E+INAGFGDDLNCIFNDDNAEKLVLRIRIMN+D+ K E++E DKM+DD+FLRCIE+NML+DMTLQG+E ISKVYMH P TD KK+I+ITE GEFKA+ EW+LETDG +LMRVLSE+DVDPVRT+SNDI EIF+VLGIEAVRK++E+E+ V SF G YVNYRHLALLCD MT +GHLMAITRHG+NRQDTG LM+CSFEETVDVLM+AA+H E DPM+GVSENI++GQL GT FDLLLDAEKCKYG+EIP N+ G G G GMFFGSA SP ++P MTPW +GATPAY WSP+ GSGMTPG GFSPS SDASG SPGYSPAW SPY PSP G +SPSYSP+SP Y P SPG GY+P
Sbjct: 402 LQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHP-DDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPG-GAMSPSYSPTSPAYEPRSPG-------GYTP 1610 HSP 2 Score: 172.94 bits (437), Expect = 6.525e-42 Identity = 87/112 (77.68%), Postives = 98/112 (87.50%), Query Frame = 0
Query: 1218 QYSPTSPGYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1326
+Y+P SP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPTSP+YSPTSP YSPTSP+YSPTSP +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1852 EYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 3 Score: 171.014 bits (432), Expect = 2.640e-41 Identity = 86/111 (77.48%), Postives = 96/111 (86.49%), Query Frame = 0
Query: 1240 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPASPSYSP 1347
Y+P SP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPTSP+YSPTSP YSPTSP+YSPTSP +YSPTSP YSPTSP+YS SP+ SP
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 4 Score: 171.014 bits (432), Expect = 2.640e-41 Identity = 86/111 (77.48%), Postives = 96/111 (86.49%), Query Frame = 0
Query: 1261 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASP---SYSPTSPSYSPTSPSYSPTSPSYSP 1368
Y+P SP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPTSP+YSPTSP YSPTSP+YSP SP +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 5 Score: 166.007 bits (419), Expect = 8.944e-40 Identity = 84/111 (75.68%), Postives = 93/111 (83.78%), Query Frame = 0
Query: 1275 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSPSYSPTSP---SYSPTSPSYSPASPSYSPKSPGQSP 1382
Y+P SP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPTSP+YSP SP YSPTSP+YSPTSP +YSPTSP YSP SP+YS SP SP
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 6 Score: 159.844 bits (403), Expect = 7.810e-38 Identity = 121/188 (64.36%), Postives = 135/188 (71.81%), Query Frame = 0
Query: 1226 YSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-----------------------------------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSP---SYSPTSPSYSPTSPSYSPASPSYSP 1375
Y+PTSPNYSPTSPSYSPTSPSYSPTSPSYSP+SP Y+P +SP Y+P SP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPTSP+YSPTSP YSP SP+YSPTSP +YSPTSP YSPTSP+YS SP+ SP
Sbjct: 1776 YTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 7 Score: 158.303 bits (399), Expect = 1.836e-37 Identity = 119/188 (63.30%), Postives = 134/188 (71.28%), Query Frame = 0
Query: 1212 YSPTSPQYSPTSPGYSPTSPNYSPTSPSYSPTSPSYSP-----------------------------------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPASPSYSPTSPSYSPTSPSYSP 1361
Y+PTSP YSPTSP YSPTSP+YSPTSPSYSP+SP Y+P +SP Y+P SP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPTSP+YSPTSP YSPTSP+YSPTSP +YSP SP YSPTSP+YS TSP+ SP
Sbjct: 1776 YTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 8 Score: 144.05 bits (362), Expect = 4.984e-33 Identity = 78/108 (72.22%), Postives = 88/108 (81.48%), Query Frame = 0
Query: 1180 SPAHGGLSPSYSPSSPTYAPTSPGLASPTSPGYSPTSPQYSPTSPGYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1284
SP + SP YSP+SP Y+PTSP SPT+P YSPTSP YSPTSP Y+PTSP YSPTSP+YSPTSP YSPTSP+YSPTSP +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1857 SPKYSPTSPKYSPTSPKYSPTSPTY-SPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 9 Score: 137.117 bits (344), Expect = 5.341e-31 Identity = 178/256 (69.53%), Postives = 197/256 (76.95%), Query Frame = 0
Query: 1239 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS----------------------------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPKSPGQSPVSPSYSPSSPKYSPTSPNYSPASPNYSPTSPNYSPTSPKYSPTSPTYSPASPKYSPSSPKYSPSSPQYSPSSPQYSNTSPQYSP 1466
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+Y+PTSPSYSPTSPSYSPTSP+Y+PTSP+ Y+P SP+Y+P+SPSYSP+SPSYSPTSP Y+P SPSYSP+SP Y+P SP YSPTSP YSP SP YSP SP SP +P YSP+SP YSPTSP Y+P SP YSPTSP YSPTSPKYSPTSPTYSP SPK S YSP+SP YSP+SP YS TSP SP
Sbjct: 1712 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 10 Score: 118.242 bits (295), Expect = 3.201e-25 Identity = 74/112 (66.07%), Postives = 84/112 (75.00%), Query Frame = 0
Query: 1155 SPGYSPAWSPQPGSPGSPAMSPYFPSPAHGGLSPSYSPSSPTYAPTSPGLASPTSPGYSPTSPQYSPTSPGYSPTSPNYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1263
SP YSP SP+ SP SP SP SP + +P YSP+SPTY+PTSP + +PTSP YSPTSP YSPTSP YSPTSP YSPTSP +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1857 SPKYSPT-SPK-YSPTSPKYSP--TSPTYSPTTPKYSPTSPTYSPTSP-VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963 HSP 11 Score: 92.0485 bits (227), Expect = 3.538e-17 Identity = 68/123 (55.28%), Postives = 79/123 (64.23%), Query Frame = 0
Query: 1123 ATPAYVWSPTGSGMTPGGPGFSPSGQSDASGLSPGYSPAWSPQPGSPGSPAMSPYFPSPAHGGLSPSYSPSSPTYAPTSPGLASPTSPGYSPTSPQ---YSPTSPGYSPTSPNYSPTSPSYSP 1242
A+P Y SPT +P P +SP+ SP YSP +P+ SP SP SP SP + SP YSP+SPTY+PTSP SPTSP YSPTSP+ YSPTSPGYSPTSP YS TSP+ SP
Sbjct: 1856 ASPKY--SPTSPKYSPTSPKYSPT--------SPTYSPT-TPK-YSPTSPTYSP--TSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963
BLAST of rna polymerase ii largest partial vs. SwissProt
Match: gi|60393735|sp|P35074.2|RPB1_CAEBR (RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA polymerase II subunit B1; AltName: Full=DNA-directed RNA polymerase III largest subunit) HSP 1 Score: 1877.83 bits (4863), Expect = 0.000e+0 Identity = 1003/1514 (66.25%), Postives = 1199/1514 (79.19%), Query Frame = 0
Query: 1 MQDLVRRGNSQYPGAKYIIRDTGERIDLRFHPKASDLHLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVMFLPTWDGKLPIPSIIKPKPFWTGKQLFTLIIPGNVNCQNFHATHPGSSENNGPYSWISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENGHLENGLFYGNIQTVINDWLLLEGHSIGIGDTIADPQTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGLAGEYVEFQNLKTIKLSDAVFKKKFKFDPTNERYARKLFTDEVLRDMVGSSEAVAEIEKEWEQLNDDRKSLRQIYPTGESKVVLPCNLERMIWNAQKIFHINKRHQTDLNPLKVIKGVRDLLKKCVIVRGEDKLSQQANDNATTLFQCLVRSTLCTKLVAETHRLTEEAFEWLLGEIESKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGTAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDQTRISPWLLRVELDRKRMTDKKLTMEHISERINAGFGDDLNCIFNDDNAEKLVLRIRIMNADDGKSEDDEQTDKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMHWPSTDEKKRIVITELGEFKAIAEWLLETDGTALMRVLSERDVDPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLLLDAEKCKYGIEIPMNV-GGGGIMGGGGMFFGSAASPSAAMTPGMTPWAEGATPAYVWSPTGSGMTPGGPGFSPSGQSDASGLSPGYSPAWSPQPGSPGSPAMSPYFPSPAHGGLSPS--YSPSSPTYAPTSPGLASPTSPGYSPTSPQYSPTSPGYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPKSPGQSPVSPSYSPSSPKYSPTSPN-----------------YSPASPNYSPTSPNYSPTSPKYSPTSPTYSPASPKYSPSSPKYSPSSPQYSPSSPQYSNTSPQYSPSSPQYSPTSPTYSPTSPNYSPTSPQ 1491
+Q+LV RG++QYPGAKYIIR+ G R+DLR+HP+A+DLHLQ GY+VERH+ DGD++VFNRQP+LHKMSMMGH+VK+LPWSTFRMNLS TSPYNADFDGDEMNLH+PQS+ETRAE+ I + PRQ+I PQANKP MGIVQDTL AVR MTKRD+F+D MM+L+M+LPTWDGK+P P+I+KPKP WTGKQ+F+LIIPGNVN H+THP SE++GPY WISPGDT+VLIE+G+L+ GI+C KT+G SAG+LLHV LE GH FY +IQTVIN WLL EGH+IGIGDTIAD TY DI +TI+KAK +V++VI KAH+D+LE TPGNTLRQTFEN+VN+ILNDARD+TG SA++SL+EFNNFK MVV+GSKGS IN+SQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRN++ Q++Q RYGEDGL G +VE QN+ T+K ++AVF++ F+ D T+ ++ RK ++++V+R++ + + ++ +E EW QL +DR+ LR+I+P G++K+VLPCNL+R+IWNAQKIF ++ R +L+PL VI GVR+L KK +IV G D++S+QA NAT L L+RSTLCTK + + +L EAF+WLLGEIE++F A A PGEMVGA+AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK+ K PSLTVFLTG AA+D EKAK+VLC+LEHTTLKKVT NTAIYYDPDP+NTVIAED+E+V+++YEMPD D TR SPWLLR+ELDRKRM DKKLTME I++RI+ GFG D++ I+ DDNAEKLV R+RI D G +EQ DKMEDD+FLRCIEANMLSD+TLQG+ AISKVYM+ P+TD+KKRI+IT G FKA+A+W+LETDGTAL+RVLSER +DPVRT+SNDICEIF VLGIEAVRKS+EKE++ V SF G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD+LM+A+ HAEVDP++GVSENI++GQL R GT FDL+LD EKCK+G+EIP NV G GI GGG A SPS +P +PW SG++P YS WSP GG+SPS +SP A G ASP + G G+SP SP P + SP +P+Y SP YSP SP +S TSP YSPTSPSYSPTSP++ SP SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP SPSYSPTSPSYSPTSPSYSP+SP YSP SP+YSP SP SP SP+YSP+SP YSPTSP+ YSP SP+YSPTSP YSPTSP+YSP+SPTY+P+SP Y+P+SP+ + SSPQYSP+SP YS TSP Y+PSSPQYSPTSPTY+P+ + TS Q
Sbjct: 396 LQELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDIFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHP-DSEDSGPYKWISPGDTKVLIEHGELLSGIVCSKTVGKSAGNLLHVVALELGHEIAANFYSHIQTVINAWLLREGHTIGIGDTIADQSTYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQEAQDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVINGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLTRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGQDVHTIYTDDNAEKLVFRLRIAGEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKAVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKSIEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEASVHAEVDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKHGMEIPQNVVMGAGIYGGG-----FAGSPSREFSPAHSPWN-------------------------------SGVTPNYSGPWSPT------------------GGMSPSAGFSP-----AGNLDGGASPFNEG-------------GWSPASPG--------DPLG-ALSPRTPAYGGMSPGV------YSPASPGFSMTSPHYSPTSPSYSPTSPAHHGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPR-AFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPADQPGTSNQ 1820 HSP 2 Score: 147.517 bits (371), Expect = 4.018e-34 Identity = 86/124 (69.35%), Postives = 97/124 (78.23%), Query Frame = 0
Query: 1408 YSPTSPNYSPTSPKYSPTSPTYSPASPKYS----------PSSPKYSPSSPQYSPSSPQYSNTSPQYSPSSPQYSPTSPTYSPTSPNYSPTSPQYSPASPTYSPTAGSSYSPTSPTYSPASPSY 1521
YSPTSP YSPTSP YSPTSPTYSP SP Y PSSP YSP+SP YSP+SPQYS TSPQYSPSSP Y+P+SPTY+PTSP + +SPQYSP SPTYSPT+ SY+P+SP YSP SP+Y
Sbjct: 1686 YSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPR-AFSSPQYSPTSPTYSPTS-PSYTPSSPQYSPTSPTY 1807 HSP 3 Score: 147.132 bits (370), Expect = 5.683e-34 Identity = 88/144 (61.11%), Postives = 107/144 (74.31%), Query Frame = 0
Query: 1316 SYSPTSPSYSPTSPSYSPTSPSYSPASPSYS----------PTSPSYSPTSPSYSPTSPSYSPASPSYSPKSPGQSPVSPSYSPSSPKYSPTSPNYSPASPNYSPTSPNYSPTSPKYSPTSPTYSPASPKYSPSS--------P 1441
+YSPTSP+YSPTSP+YSPTSP+YSP SPSY P+SP+YSPTSPSYSPTSP YSP SP YSP SP +P SP+Y+P+SP+ + +SP YSP SP YSPTSP+Y+P+SP+YSPTSPTY+P SP P + P
Sbjct: 1685 TYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPR-AFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTP-SPADQPGTSNQYSPSSP 1826 HSP 4 Score: 127.872 bits (320), Expect = 3.853e-28 Identity = 124/296 (41.89%), Postives = 140/296 (47.30%), Query Frame = 0
Query: 1335 SPSYSPA-SPSYSPTSPSYS-PTSPS--YSPTSPSYSPASPSYSPKSP----GQSPVSP-----SYSPSSPKYSPTSPN-YSPASPNYSPTSPNYSPTSPKYSPTSPTY-------------SPASPKYSPSSPK-----------------------------------------------------YSPSSPQYSPSSPQYSNTSPQYSPSSPQ-----------------YSPTSPTYSPTSPNYSPTSPQYSPASPTY----------SPTAGSS--YSPTSPTYSPASPSY 1521
S +SPA SP S +P+YS P SP+ SP S +SPA SP G SP SP + SP +P Y SP YSPASP +S TSP+YSPTSP YSPTSP + SP+ SPS YSP+SP YSP+SP YS TSP YSP+SP YSPTSP+YSPTSP YSPTSPQYSP+SPTY SP A SS YSPTSPTYSP SPSY
Sbjct: 1499 SREFSPAHSPWNSGVTPNYSGPWSPTGGMSP-SAGFSPAGNLDGGASPFNEGGWSPASPGDPLGALSPRTPAYGGMSPGVYSPASPGFSMTSPHYSPTSPSYSPTSPAHHGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRAFSSPQYSPTSPTYSPTSPSY 1793
BLAST of rna polymerase ii largest partial vs. SwissProt
Match: gi|380865455|sp|P16356.3|RPB1_CAEEL (RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA polymerase II subunit B1; AltName: Full=DNA-directed RNA polymerase III largest subunit) HSP 1 Score: 1795.79 bits (4650), Expect = 0.000e+0 Identity = 850/1236 (68.77%), Postives = 1029/1236 (83.25%), Query Frame = 0
Query: 1 MQDLVRRGNSQYPGAKYIIRDTGERIDLRFHPKASDLHLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVMFLPTWDGKLPIPSIIKPKPFWTGKQLFTLIIPGNVNCQNFHATHPGSSENNGPYSWISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENGHLENGLFYGNIQTVINDWLLLEGHSIGIGDTIADPQTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGLAGEYVEFQNLKTIKLSDAVFKKKFKFDPTNERYARKLFTDEVLRDMVGSSEAVAEIEKEWEQLNDDRKSLRQIYPTGESKVVLPCNLERMIWNAQKIFHINKRHQTDLNPLKVIKGVRDLLKKCVIVRGEDKLSQQANDNATTLFQCLVRSTLCTKLVAETHRLTEEAFEWLLGEIESKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGTAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDQTRISPWLLRVELDRKRMTDKKLTMEHISERINAGFGDDLNCIFNDDNAEKLVLRIRIMNADDGKSEDDEQTDKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMHWPSTDEKKRIVITELGEFKAIAEWLLETDGTALMRVLSERDVDPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLLLDAEKCKYGIEIPMNVGGGGIMGGGGMFFGS-AASPS-AAMTPGMTPWAEGATPAY---VWSPTGSGMTPGGPGFSPSGQSDASGLSPGYSPAWSPQPGSPGSPAMSPYFPSPAHGGLSPSYSPSSPTYAPTSPGLASPTSPGYSPTSPQYSPTSPGYSPTSP 1231
+Q+LV RG++QYPGAKYIIR+ G R+DLR+HP+A+DLHLQ GY+VERH+ DGD++VFNRQP+LHKMSMMGH+VK+LPWSTFRMNLS TSPYNADFDGDEMNLH+PQS+ETRAE+ I + PRQ+I PQANKP MGIVQDTL AVR MTKRDVF+D MM+L+M+LPTWDGK+P P+I+KPKP WTGKQ+F+LIIPGNVN H+THP SE++GPY WISPGDT+V+IE+G+L+ GI+C KT+G SAG+LLHV LE G+ FY +IQTVIN WL+ EGH+IGIGDTIAD TY DI +TI+KAK +V++VI KAH+D+LE TPGNTLRQTFEN+VN+ILNDARD+TG SA++SL+EFNNFK MVV+GSKGS IN+SQVIACVGQQNVEGKRIPFGFR RTLPHFIKDDYGPES+GFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRN++ Q++Q RYGEDGL G +VE QN+ T+K ++AVF++ F+ D T+ ++ RK ++++V+R++ S + ++ +E EW QL +DR+ LR+I+P G++K+VLPCNL+R+IWNAQKIF ++ R +L+PL VI GVR+L KK +IV G D++S+QA NAT L L+RSTLCTK + +L EAF+WLLGEIES+F A A PGEMVGA+AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRLKEIIN+SK K PSLTVFLTG AA+D EKAK+VLC+LEHTTLKKVT NTAIYYDPDP+NTVIAED+E+V+++YEMPD D +R SPWLLR+ELDRKRM DKKLTME I++RI+ GFG+D++ I+ DDNAEKLV R+RI D G+++ +EQ DKMEDD+FLRCIEANMLSD+TLQG+ AISKVYM+ P+TD+KKRI+IT G FK++A+W+LETDGTAL+RVLSER +DPVRT+SNDICEIF VLGIEAVRK++E+E++ V SF G YVNYRHLALLCDVMTAKGHLMAITRHGINRQ+ GALMRCSFEETVD+LM+AA HAE DP++GVSENI++GQL R GT FDL+LD EKCKYG+EIP NV +MGGG F+GS A SPS +P +PW G TP Y WSPT GM+PG GFSP+G +D G SP WS P SPG P G L SP +P+Y SPG+ SP+SP +S TSP YSPTSP YSPTSP
Sbjct: 396 LQELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHP-DSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQ-EEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNV----VMGGG--FYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA-GFSPAGNTDG-GASPFNEGGWS--PASPGDPL----------GAL----SPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPTSPSYSPTSP 1605 HSP 2 Score: 176.022 bits (445), Expect = 7.981e-43 Identity = 108/173 (62.43%), Postives = 130/173 (75.14%), Query Frame = 0
Query: 1337 SYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPAS-------------PSYSPKSPGQSPVSPSYSPSSPKYSPTSPNYSPASPNYSPTSPNYSPTSPKYSPTSPTYSPASPKYSPSSPKYSPSSPQYSPSSPQYSNTSPQYSPSSPQYSPTSPTYSPTSPNYSPTSPQYSPAS 1496
+YSP SP+YSPTSP+YSPTSP+YSPTSPSY P+YSP SP SP SP YSP+SP+YSP+SP Y+P+SP Y+PTSP +SP+YSPTSPTYSP SP Y+PSSP+YSP+SP Y+PS + TS QYSP+SP YSP+SPTYSP SP+YSP+SP Y P S
Sbjct: 1685 TYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPR-GFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTYSPASPSYSPSSPTYDPNS 1856 HSP 3 Score: 173.711 bits (439), Expect = 3.549e-42 Identity = 99/154 (64.29%), Postives = 118/154 (76.62%), Query Frame = 0
Query: 1386 SYSPSSPKYSPTSPNYSPASPNYSPTSPNYS-------------PTSPKYSPTSPTYSPASPKYSPSSPKYSPSSPQYSPSSPQYSNTSPQYSPSSPQYSPTSPTYSPTSPNYSPTSPQYSPASPTYSPT------AGSSYSPTSPTYSPASPS 1520
+YSP+SP YSPTSP YSP SP YSPTSP+Y P+SP YSPTSP+YSP SP+YSP+SP+YSPSSP Y+PSSP Y+ TSP+ SSPQYSPTSPTYSPTSP+Y+P+SPQYSP SPTY+P+ + YSPTSPTYSP+SP+
Sbjct: 1685 TYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPR-GFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPT 1837 HSP 4 Score: 170.629 bits (431), Expect = 3.620e-41 Identity = 103/154 (66.88%), Postives = 119/154 (77.27%), Query Frame = 0
Query: 1358 SYSPTSPSYSPASPSYSPKSPGQSPVSPSYSPSS------PKYSPTSPNYSPASPNYSPTSPNYSPTSPKYSPTSPTYSPASPKYSPSSPKYSPSSPQYSPSSPQYSNTSPQYSPSSPQYSPTSPTYSP-------TSPNYSPTSPQYSPASPT 1498
+YSPTSP+YSP SP+YSP SP SP SPSY PKYSP+SP YSP SP+YSPTSP YSPTSP+YSP+SPTY+P+SP Y+P+SP+ SSPQYSP+SP YS TSP Y+PSSPQYSPTSPTY+P TS YSPTSP YSP+SPT
Sbjct: 1685 TYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPR-GFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPT 1837 HSP 5 Score: 131.339 bits (329), Expect = 2.904e-29 Identity = 118/305 (38.69%), Postives = 145/305 (47.54%), Query Frame = 0
Query: 1321 SPSYSPTSPSYSPTSPSYSP--ASPSYSPTSPSYSPTSPSYSPTSPSYSPASP----SYSPKSPGQSPVSPSYSPSSPKYSPTSPN-YSPASPNYSPTSPNYSPTSPKYSPTSPT------------YSPASPKYSPSSPK-----------------------------------------------------YSPSSPQYSPSSPQYSNTSPQYSPSSPQ--------------------YSPTSPTYSPTSPNYSPTSPQYSPASPTYSPTAGS------------SYSPTSPTYSPASPSY 1521
SPS SP++SP + +P A ++SPT+ SP + +SP + ASP +SP SPG P+ + SP +P Y SP YSP+SP +S TSP+YSPTSP YSPTSP SP+ SPS YSP+SP YSP+SP YS TSP YSP+SP YSPTSP+YSPTSP YSPTSPQYSP+SPTY+P++ + YSPTSPTYSP SPSY
Sbjct: 1495 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGA-GFSPAGNTDGGASPFNEGGWSPASPG-DPLG-ALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSY 1796 HSP 6 Score: 83.9593 bits (206), Expect = 8.883e-15 Identity = 49/86 (56.98%), Postives = 57/86 (66.28%), Query Frame = 0
Query: 1457 YSNTSPQYSPSSPQYSPTSPTYSPTSPN--------------------YSPTSPQYSPASPTYSPTAGSSYSPTSPTYSPASPSYD 1522
YS TSP YSP+SP YSPTSPTYSPTSP+ YSPTSP YSP SP YSPT+ YSP+SPTY+P+SP+Y+
Sbjct: 1686 YSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTS-PQYSPSSPTYTPSSPTYN 1770
BLAST of rna polymerase ii largest partial vs. SwissProt
Match: gi|322510106|sp|P18616.3|NRPB1_ARATH (RecName: Full=DNA-directed RNA polymerase II subunit 1; AltName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=DNA polymerase II subunit B1; AltName: Full=DNA-directed RNA polymerase III largest subunit) HSP 1 Score: 1368.99 bits (3542), Expect = 0.000e+0 Identity = 782/1451 (53.89%), Postives = 983/1451 (67.75%), Query Frame = 0
Query: 14 GAKYIIRDTGERIDLRFHPKASDLHLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVMFLPTWDGKLPIPSIIKPKPFWTGKQLFTLIIPGNVNCQNFHATHPGSSENNGPYSWISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENGHLENGLFYGNIQTVINDWLLLEGHSIGIGDTIADPQTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGLAGEYVEFQNLKTIKLSDAVFKKKFKFDPTNERYARKLFTDEVLRDMVGSSEAVAEIEKEWEQLNDDRKSL-RQIYPTGESKVVLPCNLERMIWNAQKIFHINKRHQTDLNPLKVIKGVRDLLKKCVIVRGEDKLSQQANDNATTLFQCLVRSTLCTKLVAETHRLTEEAFEWLLGEIESKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGTAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDQT--RISPWLLRVELDRKRMTDKKLTMEHISERINAGFGDDLNCIFNDDNAEKLVLRIRIMNADDGKSEDDEQTDKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMHWPSTDEKKRIVITELGEFKAIAEWLLETDGTALMRVLSERDVDPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLLLDAEKCKYGIEIPMNVGGGGIMGGGGMFFGSAASPSAAMTPGMTPWAEG-ATPAYVWSPTGSGMTPGGPGFSPSGQSDASGLSPGYSPAWSPQPGSPG---SPAMSPYFPSPAHGGLSPSYSPSSPTYAPTSPGLASPTSPGYSPTSPQYSPTSPGYSPTSP------------------------------------------NYSPTSPSYSPTSPSYSPTSPS-----------------------------------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPKSPGQ 1380
GAKYIIRD G+R+DLR+ K+SD HL+ GYKVERH+ DGD V+FNRQPSLHKMS+MGH+++++P+STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEVL + + P+ I++PQAN+P MGIVQDTL RK+TKRD F++K+ MN +M+ +DGK+P P+I+KP+P WTGKQ+F LIIP +N + A H + +I+PGDT+V IE G+L+ G LCKKTLG S GSL+HV E G F G+ Q ++N WLL G +IGIGDTIAD T I TI AK V ++I + EL+ PG T+R TFEN+VN++LN ARD G SA++SL E NN K MV AGSKGS IN+SQ+ ACVGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRN++G VIQF YGEDG+ ++E Q L ++K+ + F + FK++ +E + +DE L D+ G E + E+ +L DR L +I G+S LP N++R IWNAQK F I+ R +D++P++++ V L ++ ++V G+D LS +A NAT F L+RSTL +K V E ++L+ EAFEW++GEIES+F + PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K+ K PSL+V+LT A++ E AK V C LE+TTL+ VT T ++YDPDP +T+I ED EFV YYEMPD D + +ISPWLLR+EL+R+ M DKKL+M I+E+IN F DDL CIFNDDNA+KL+LRIRIMN + K E Q + EDD+FL+ IE+NML++M L+G+ I+KV++ + ++ E G FK EW+L+T+G L+ V+ DVDP RT+SN + EI VLGIEAVR+++ E+ V SF G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG LMRCSFEETVD+L+DAA++AE D +RGV+ENI++GQL +GT +L L+ E K IE+ + M G A SP + TP+ EG +P Y+ SP LSP +SP G S + SP + SP YSP+SP Y+PTS PGYSPTSP YSP+SPGYSPTSP +YSPTSP+YSPTSP+YSPTSP+ YSPTSP+YSPTSP YSPTSPSYSPTSPSY PTSPSY+P S YSP S +YSP++ SP SP YSPTSP+YSPTSPSYSPTSPSYSP+SP+YSP+SP S SP YSP S YSP P YSP S GQ
Sbjct: 415 GAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLLRYSAWHADTET-----GFITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVVPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLTPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDEDVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRIMNDEGPKGE--LQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK-----QVRKSRFDEEGGFKTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQL----PSYMDGLEFGMTPARSPVSG-----TPYHEGMMSPNYLLSPNMR-------------------LSPMSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPTSPGYSPTSPGYSPTS--------PGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSP-SIAYSPSNARLSPASP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYSP-SAGYSPTLPGYSPSSTGQ 1814 HSP 2 Score: 86.2705 bits (212), Expect = 1.770e-15 Identity = 104/258 (40.31%), Postives = 114/258 (44.19%), Query Frame = 0
Query: 1373 YSPKSPGQSPVSPSYSPSSPKYSPTSPNYSPASPN-------------------------------------------------YSPTSPNYSPTSPK------------------------------------------YSPTSPTYSPASPKYSPSSPKYSPSSPQYSPSSPQYSNTSPQYSPSSPQYSPTSPTYSPTSPNYSPTSPQYSP---------------------ASPTYSPTAGSSYSPTSPTYSPAS 1518
YSP SPG SP SP YSP+SP YSP+SP YSP SP YSPTSP YSPTSP YSPTSP YSP SP YSP+SP Y P+SP Y+P S +YS S YSPS+ + SP SP YSPTSPNYSPTSP YSP ASP YSP+AG YSPT P YSP+S
Sbjct: 1558 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYS-PSIAYSPSNARLSPASP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYSPSAG--YSPTLPGYSPSS 1811
BLAST of rna polymerase ii largest partial vs. SwissProt
Match: gi|166202448|sp|P35084.2|RPB1_DICDI (RecName: Full=DNA-directed RNA polymerase II subunit rpb1; Short=RNA polymerase II subunit B1; AltName: Full=DNA-directed RNA polymerase III subunit A) HSP 1 Score: 1293.1 bits (3345), Expect = 0.000e+0 Identity = 641/1100 (58.27%), Postives = 814/1100 (74.00%), Query Frame = 0
Query: 1 MQDLVRRGNSQYPGAKYIIRDTGERIDLRFHPKASDLHLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVMFLPTWDGKLPIPSIIKPKPFWTGKQLFTLIIPGNVNCQNFHATHPGSSENNGPYSWISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENGHLENGLFYGNIQTVINDWLLLEGHSIGIGDTIADPQTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGLAGEYVEFQNLKTIKLSDAVFKKKFKFDPTNERYARKLFTDEVLRDMVGSSEAVAEIEKEWEQLNDDRKSLR-QIYPTGESKVVLPCNLERMIWNAQKIFHINKRHQTDLNPLKVIKGVRDLLKKCVIVRGEDKLSQQAN---------DNATTLFQCLVRSTLCTKLVAETHRLTEEAFEWLLGEIESKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGTAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPD--FDQTRISPWLLRVELDRKRMTDKKLTMEHISERINAGFGDDLNCIFNDDNAEKLVLRIRIMNADDGKSEDDEQTDKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMHWPSTDEKKRIVITELGEFKAIAEWLLETDGTALMRVLSERDVDPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLLLDAEKCK--YGIEIP 1086
M++L+R G S++PGAKYIIR+ G R DLRF K SD HL+CGYKVERHI+DGD+V+FNRQPSLHKMSMMGH++KV+P+STFR+NLS TSPYNADFDGDEMNLHVPQ++ETRAEV+ I + PRQI++PQ+N+P MGIVQDTL R TKRD F++K+ +MN++M+LP+WDGK+P P+I+KPK WTGKQLF+LIIP ++N F +TH N S GDTRV+IE G+L+ GILCK++LGA+ GS++HV E+GH LF QTV+N WL+ G ++GIGDTIAD T A + TI AK++V E+I KA + + E PG ++ +TFE +VN++LN ARD G SA+ SL+E NN K MV AGSKGS IN+SQ++ACVGQQNVEGKRIPFGF+ RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDTAVKT+ETGYIQRRL+KAME V + YD TVRN++G VIQF YGEDG+ G +VE Q++ +++ + ++ ++ Y V+ + S +EKE+E++ DR LR +I P+GE+ LP NL R+I NAQK+F+I+ R +DLNP V+ + L+ + I+ D N NAT LF LVRST +K V RLTE+AF W+ GEIESKF A A PGEMVGA+AAQSIGEPATQMTLNTFH+AGVSSKNVTLGVPRLKEIINI+K+ K PSLT++L ARD ++AK V +LE+TTL VT+ T IYYDPDPQNT+I+ED EFVN Y+E+PD D +SPWLLR+ELDR +TDKKLTM I++ + FG LNCIF+DDNAEKL+LRIR++ +S++ + TD +DD FLR IE+NMLS+M L+G++ I KV+M TD+K V TE G F EW+L+TDG +L+ V+S DVD RT+SNDI EI VLGIEAVR ++ KE+ V SF G YVNYRHLA+L DVMT +GHLMAITRHGINR +TG LMRCSFEETV++LMDAA +E D ++GV+ENII+GQLP +GT +F++ L+ + K + I +P
Sbjct: 393 MRELIRNGPSEHPGAKYIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEKDLVMNILMWLPSWDGKVPPPAILKPKQLWTGKQLFSLIIP-DINLIRFTSTHNDKEPNE-----CSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQTQTVVNHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNKQFECQPGKSVIETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQMMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCFVENQSIDSLRKDNTELERMYRHQVDKPDYGDGWMDPLVIEHVRNDSLTRDTLEKEFERIKSDRSLLRNEIIPSGEANWPLPVNLRRLINNAQKLFNIDIRRVSDLNPAVVVLEIEKLVARLKIIATADTTEDDENFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIESKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQVKTPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAEFVNSYFELPDEEIDVHSMSPWLLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIFSDDNAEKLILRIRMV-----ESQETKGTDNDDDDQFLRRIESNMLSEMVLRGIKGIKKVFMR---TDDKIPKV-TENGGFGVREEWILDTDGVSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEILMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALP 1477
BLAST of rna polymerase ii largest partial vs. SwissProt
Match: gi|548817|sp|P36594.1|RPB1_SCHPO (RecName: Full=DNA-directed RNA polymerase II subunit rpb1; Short=RNA polymerase II subunit 1; Short=RNA polymerase II subunit B1; AltName: Full=DNA-directed RNA polymerase III largest subunit) HSP 1 Score: 1211.82 bits (3134), Expect = 0.000e+0 Identity = 655/1251 (52.36%), Postives = 848/1251 (67.79%), Query Frame = 0
Query: 1 MQDLVRRGNSQYPGAKYIIRDTGERIDLRFHPKASDLHLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVMFLPTWDGKLPIPSIIKPKPFWTGKQLFTLIIPGNVNCQNFHATHPGSSENNGPYSWISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENG-HLENGLFYGNIQTVINDWLLLEGHSIGIGDTIADPQTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGLAGEYVEFQNLKTIKLSDAVFKKKFKFDPTNERYARKLFTDEVLRDMVGSSEAVAEIEKEWEQLNDDRKSL-RQIYPTGESKVVLPCNLERMIWNAQKIFHINKRHQTDLNPLKVIKGVRDLLKKCVIVRGEDKLSQQANDNATTLFQCLVRSTLCTKLVAETHRLTEEAFEWLLGEIESKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGTAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDQT----RISPWLLRVELDRKRMTDKKLTMEHISERINAGFGDDLNCIFNDDNAEKLVLRIRIMNADDGKSEDDEQTDKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMHWPSTDEKKRIVITELGEFKAIAEWLLETDGTALMRVLSERDVDPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLLLDAEKCKYGIEIPMNVGGGGIMGGGGMFFGSAASPSAAMTPGMTPWAEGATPAYVWSPTGSGMTPGGPGFSPSGQSDASGLSPGYSPAWSPQPGSPGSPAMSPYFPSPAHGGLSPSYSPSSPTYAPTSPGLASPTSPGYSPTSPQYSPTSPGYSPTSPNYSPTSPSYSPTSP 1245
+Q+LVR G ++PGAKYIIRDTGERIDLR+H +A D+ L+ G++VERHI DGD+V+FNRQPSLHKMSMMGH+++V+P+STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAE+ I + P+QI++PQ+NKP MGIVQDTL VRK + RD FL + +MN+++++P WDG LP P I+KPK WTGKQ+ +LIIP +N ++ S +P D+ +LIENG++I G++ KKT+GAS G L+H E G + G F G IQ V+N WLL G SIGIGDTIAD T ++ T+K+A+ +V E I A + L+ PG TLR++FE +V+RILN ARD G SA+ SL + NN K MV AGSKGS IN+SQ+ ACVGQQ VEGKRIPFGF+ RTLPHF KDD PESRGF+ENSYL GLTP EF+FHAM GREGLIDTAVKTAETGYIQRRL+KAME VMV YDGTVRNA+G +IQF YGEDGL VE+Q +++LS F+KK++ D +R + + D S +++E+ QL DR+ L + I+P G+++ LP N++R+I NA +IFH+ + TDL P +I G+ +L+ K I RG D++++ +NAT LFQ L+RS K V +RL + AFEW++GE+E++F A +PGEMVG +AAQSIGEPATQMTLNTFH+AGVSSKNVTLGVPRLKEI+N++K K PSLT++L A + + AKNV ++EHTTL VT+ T I+YDPDPQ+TVI ED++FV ++ +PD + + SPWLLR+ELDR +M DKKL+M ++ +I F DL I+++DNA+KL++R RI+ D + ++ + +E+D+FL+ IE +ML ++L+G+ I++VYM E K + E G F+ EW+LETDG L ++ VD RT SN EI +LGIEA R ++ KE+ V F G YVNYRHLALLCDVMT++GHLMAITRHGINR +TGALMRCSFEETV++LMDAA+ E D +G+SENI++GQL MGT AFD+ LD + + MN G+A A G + EGA Y SP M G SP DA+ SP Q GS G Y G SP SP Y TSP +S SPGY TSP YSP+SP TSP Y P+SPSYSPTSP
Sbjct: 394 LQELVRNGPDEHPGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNIMLWVPDWDGILPPPVILKPKVLWTGKQILSLIIPKGINL----------IRDDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEICKGFFNG-IQRVVNYWLLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFEKKYRIDLMEDRSLSLYMENSIEND----SSVQDLLDEEYTQLVADRELLCKFIFPKGDARWPLPVNVQRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFRGSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIYLMPWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEVEENLYKQSPWLLRLELDRAKMLDKKLSMSDVAGKIAESFERDLFTIWSEDNADKLIIRCRIIRDD--DRKAEDDDNMIEEDVFLKTIEGHMLESISLRGVPNITRVYMM-----EHKIVRQIEDGTFERADEWVLETDGINLTEAMTVEGVDATRTYSNSFVEILQILGIEATRSALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIMLGQLAPMGTGAFDIYLDQD-------MLMNYS-----------LGTAVPTLAGSGMGTSQLPEGAGTPYERSP----MVDSGFVGSP----DAAAFSP------LVQGGSEGREGFGDY---GLLGAASPYKGVQSPGY--TSP-FSSAMSPGYGLTSPSYSPSSP-GYSTSPAYMPSSPSYSPTSP 1583
BLAST of rna polymerase ii largest partial vs. SwissProt
Match: gi|442570012|sp|Q75A34.2|RPB1_ASHGO (RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA polymerase II subunit 1; Short=RNA polymerase II subunit B1; AltName: Full=DNA-directed RNA polymerase III largest subunit) HSP 1 Score: 1177.54 bits (3045), Expect = 0.000e+0 Identity = 634/1250 (50.72%), Postives = 842/1250 (67.36%), Query Frame = 0
Query: 1 MQDLVRRGNSQYPGAKYIIRDTGERIDLRFHPKASDLHLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVMFLPTWDGKLPIPSIIKPKPFWTGKQLFTLIIPGNVNCQNFHATHPGSSENNGPYSWISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENGHLENGLFYGNIQTVINDWLLLEGHSIGIGDTIADPQTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGLAGEYVEFQNLKTIKLSDAVFKKKFKFDPTNERYARKLFTDEVLRDMVGSSEAVAEIEKEWEQLNDDRKSLRQIYPTGESKVVLPCNLERMIWNAQKIFHINKRHQTDLNPLKVIKGVRDLLKKCVIVRGEDKLSQQANDNATTLFQCLVRSTLCTKLVAETHRLTEEAFEWLLGEIESKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGTAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDQTRIS-----PWLLRVELDRKRMTDKKLTMEHISERINAGFGDDLNCIFNDDNAEKLVLRIRIMNADDGKSEDDEQTDKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMHWPSTDEKKRIVITELGEFKAIAEWLLETDGTALMRVLSERDVDPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLLLDAEKC-------KYGIEIPMNVGGGGIMGGGGMFFGSAASPSAAMTPGMTPWAEGATPAYVWSPTGSGMTPGGPGFSPSGQSDASGLSPGYSPAWSPQPGSPGSPAMSPYFPSPAHGGLSPSYSPSSPTYAPTSPGLASPTSPGYSPTSPQYSPTSPGYSPTSPNYSPTSP 1238
+ LVR G +++PGAKY+IRD G+RIDLR+ +A D+ LQ G+KVERHI D D V+FNRQPSLHKMSMM H+VKV+P+STFR+NLS TSPYNADFDGDEMNLHVPQS ETRAE+ + P QI++PQ+NKPCMGIVQDTL +RKMT RD F++ +Q++N++ ++P WDG +P P+I+KPKP W+GKQL ++ IP ++ Q F + +++SP D +LI +GQ+I G++ KKT+G+S+G L+HV E G +GNIQ V+N WLL G SIGIGDTIAD +T +I I AK +V EV +A ++ L A G TLR++FE+ V R LN+ARDK G SA+ +L + NN K MV AGSKGS IN++Q+ ACVGQQ+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EF+FHAMGGREGLIDTAVKTAETGYIQRRL+KA+E +MV+YDGT RN++G +IQF YGEDG+ ++E Q++ TI SD F+K+++ D N YA E ++VG + +++E++QL DR LR+I+ GE LP N+ R+I NAQ+ F I+ TDL+ V++GVR L ++ +++RG+ ++ Q+A +NA TLF CL+RS L T+ V +RLT++ FEW+L IE++F + PGEMVG +AAQSIGEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+L + A D EKAK + +EHTTLK VT + IYYDPDP +TVI ED+E + +++ + D ++T S PWLLR+ELDR MTDK LTM + E+I F +DL I+++DNAEKL++R R++ D K+ D E + E+D L+ IE ML +TL+G++ I++V M + R V +E GE+ I EW+LETDG L V+S VDP R +N +I +VLGIEA R ++ KE+ V + G YVNYRH+ALL DVMT++G LM++TRHG NR DTGALMRCSFEETV++L +A + AE+D GVSEN+I+GQ+ +GT +FD+++D E K + +N GG A+P + G+ ++SP +G SDA S G++ G SP F +G PTSPG +SPG+SPTSP YSPTSP YSPTSP+YSPTSP
Sbjct: 388 LTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLYWIPDWDGVIPTPTILKPKPLWSGKQLLSMAIPSGIHLQRF----------DEGTTYLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPEVCAKLFGNIQKVVNYWLLHNGFSIGIGDTIADEKTMREITDAIALAKKKVEEVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFVYGEDGMDAAHIEKQSIDTIPGSDLAFEKRYRIDLLNPNYALDPNLLESGTEIVGDLKLQNLLDEEYKQLVQDRHFLRKIFMDGEHNWPLPVNIRRIIQNAQQTFRIDSTKPTDLSIQDVVQGVRGLQERLLVLRGKSQILQEAQENAITLFCCLLRSRLATRRVITEYRLTKQTFEWVLNNIEAQFLRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEESYATDQEKAKLIRSAIEHTTLKSVTVASEIYYDPDPSSTVIEEDEEIIQLHFSLMD-EETEASLKHQSPWLLRLELDRVAMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEKLIIRCRVVR--DPKTLDAEA--EAEEDHMLKKIENTMLESITLRGVQDITRVVMM-----KYDRKVPSETGEYHKIPEWVLETDGVNLSEVMSVPGVDPTRIYTNSFIDIMNVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGAAAELDDCSGVSENVILGQMAPIGTGSFDVMIDDESLIKYMPEQKLSTAVEVNDGG--------------ATPYNS-DAGLVNTKVDIKDELMFSP-----------LVEAGTSDAIA-SGGFTAYGGADYGGATSP-----FSGYGNG--------------PTSPGFGDVSSPGFSPTSPAYSPTSPSYSPTSPSYSPTSP 1571
BLAST of rna polymerase ii largest partial vs. nr
Match: gi|565412096|dbj|BAO20839.1| (RNA polymerase II largest subunit, partial [Cyclops vicinus]) HSP 1 Score: 2286.15 bits (5923), Expect = 0.000e+0 Identity = 1103/1237 (89.17%), Postives = 1161/1237 (93.86%), Query Frame = 0
Query: 1 MQDLVRRGNSQYPGAKYIIRDTGERIDLRFHPKASDLHLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVMFLPTWDGKLPIPSIIKPKPFWTGKQLFTLIIPGNVNCQNFHATHPGSSENNGPYSWISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENGHLENGLFYGNIQTVINDWLLLEGHSIGIGDTIADPQTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGLAGEYVEFQNLKTIKLSDAVFKKKFKFDPTNERYARKLFTDEVLRDMVGSSEAVAEIEKEWEQLNDDRKSLRQIYPTGESKVVLPCNLERMIWNAQKIFHINKRHQTDLNPLKVIKGVRDLLKKCVIVRGEDKLSQQANDNATTLFQCLVRSTLCTKLVAETHRLTEEAFEWLLGEIESKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGTAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDQTRISPWLLRVELDRKRMTDKKLTMEHISERINAGFGDDLNCIFNDDNAEKLVLRIRIMNADDGKSEDD---EQTDKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMHWPSTDEKKRIVITELGEFKAIAEWLLETDGTALMRVLSERDVDPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLLLDAEKCKYGIEIPMNVGGGGIMGGGGMFFGSAASPSAAMTPGMTPWAEGATPAY--VWSP-TGSGMTPGGPGFSPSGQSDASGLSP--GYSPAWSPQPGSPGSP-AMSPYFPSPAHGGLSPSYSPSSPTYAPTSPGL---ASPTSPGYSPTSPQYSPTSPG 1225
MQ+LVRRGNSQYPGAKYIIRDTGERIDLR+HPK SDLHLQCGY+VERHI DGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAE+LNIHLTPRQII PQ+NKP MGIVQDTLTAVRKMTKRDVF+ KE MM LVMFLPTWDGKLPIP+IIKPKPFWTGKQLFTLIIPGNVNC HATHP ENNGPY WISPGDTRVLIE+G+L+MGILCKK+LGASAGSLLHVSQLENGH NG FYGNIQTVIN+WLLLEGHSIGIGDTIADP TYADII+TIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTG SAKRSLTEFN+FKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQ+IQFRYGEDGLA E VEFQ++KTI+LS+AVF++K+KFDPTNERY R+LFTDEVLR+MVGS+E VAEIE+EWEQL DR++LRQI+PTG +KVVLPCNLERMIWNAQKIFHINKRH DL+PLKVI GVR+LL+KCV+VRG+DKLS+ ANDNATTLFQ LVRSTLC+KLVAE +RL+EEAFEWLLGEIESKF A ATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTG AARDAEKAKNVLCRLEHTTLKKVTANTAIYYDP PQNTVIAEDQEFVNVYYEMPDFD +RISPWLLR+ELDRKRMTDKKLTME ISE+INAGFGDDLNCIFNDDNAEKLVLRIRIMN+ DG+S++D EQ DKMEDDMFLRCIEANMLSDMTLQGLEAI KVYMH P+T +KKRIVIT+ GEFKAIAEWLLETDGTALMRVLSERDVDPVRT SNDICEIF+VLGIEAVR+SVE+E+ TV +FYG+YVNYRHLALLCDVMTAKGHLMAITRHGINRQD GALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTA FDLLLDAEKCKYGIEIPMNVG GG+ G GMFFGS ASPSA MTPGMTPWAEGATPAY WSP GSGMTPGG FSPSGQSDASGLSP GYSPAWSPQPGSPGSP MSPY PSPAHGGLSPSYSPSSPTYAPTSP L SP+SPGYSPTSPQYSPTSPG
Sbjct: 400 MQELVRRGNSQYPGAKYIIRDTGERIDLRYHPKPSDLHLQCGYRVERHIRDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEILNIHLTPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDVFISKEDMMTLVMFLPTWDGKLPIPAIIKPKPFWTGKQLFTLIIPGNVNCMRLHATHP-DEENNGPYHWISPGDTRVLIEHGELLMGILCKKSLGASAGSLLHVSQLENGHELNGKFYGNIQTVINNWLLLEGHSIGIGDTIADPGTYADIIATIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGASAKRSLTEFNSFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQMIQFRYGEDGLAAEVVEFQSIKTIQLSNAVFERKYKFDPTNERYVRRLFTDEVLREMVGSNEVVAEIEREWEQLCKDREALRQIFPTGNNKVVLPCNLERMIWNAQKIFHINKRHPCDLSPLKVIIGVRELLEKCVVVRGDDKLSKLANDNATTLFQSLVRSTLCSKLVAEQYRLSEEAFEWLLGEIESKFMQALATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPFPQNTVIAEDQEFVNVYYEMPDFDASRISPWLLRIELDRKRMTDKKLTMEQISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNS-DGESKNDGEEEQADKMEDDMFLRCIEANMLSDMTLQGLEAIGKVYMHLPNTKDKKRIVITDAGEFKAIAEWLLETDGTALMRVLSERDVDPVRTISNDICEIFTVLGIEAVRRSVEREMFTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDAGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTACFDLLLDAEKCKYGIEIPMNVGAGGL--GAGMFFGSMASPSAGMTPGMTPWAEGATPAYGNAWSPGMGSGMTPGGLAFSPSGQSDASGLSPGGGYSPAWSPQPGSPGSPGGMSPYIPSPAHGGLSPSYSPSSPTYAPTSPSLIGGMSPSSPGYSPTSPQYSPTSPG 1632
BLAST of rna polymerase ii largest partial vs. nr
Match: gi|1209703218|gb|OWR53673.1| (RNA polymerase 2 largest subunit [Danaus plexippus plexippus]) HSP 1 Score: 2257.26 bits (5848), Expect = 0.000e+0 Identity = 1149/1512 (75.99%), Postives = 1281/1512 (84.72%), Query Frame = 0
Query: 1 MQDLVRRGNSQYPGAKYIIRDTGERIDLRFHPKASDLHLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVMFLPTWDGKLPIPSIIKPKPFWTGKQLFTLIIPGNVNCQNFHATHPGSSENNGPYSWISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENGHLENGLFYGNIQTVINDWLLLEGHSIGIGDTIADPQTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGLAGEYVEFQNLKTIKLSDAVFKKKFKFDPTNERYARKLFTDEVLRDMVGSSEAVAEIEKEWEQLNDDRKSLRQIYPTGESKVVLPCNLERMIWNAQKIFHINKRHQTDLNPLKVIKGVRDLLKKCVIVRGEDKLSQQANDNATTLFQCLVRSTLCTKLVAETHRLTEEAFEWLLGEIESKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGTAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDQTRISPWLLRVELDRKRMTDKKLTMEHISERINAGFGDDLNCIFNDDNAEKLVLRIRIMNADDGKSED-DEQT-DKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMHWPSTDEKKRIVITELGEFKAIAEWLLETDGTALMRVLSERDVDPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLLLDAEKCKYGIEIPMNVGGGGIMGGGGMFFGSAASPSAAMTPGMTPWAEGATPAY---VWSP--TGSGMTPGGPGFSPSGQSDASGLSPGYSPAWSPQPGSPGSPA--MSPYFPSPAHGGLSPSYSPSSPTYAPTSPGLA------SPTSPGYSPTSPQYSPTSPGYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSPSYS-----------------PTSPSYSPTSPSYSPASPSYSPKSPGQSPVSPSYSPSSPKYSPTSPNYSPASPNYSPTSPNYSPTSPKYSPTSPTYSPASPKYSPSSPKYSPSSPQY--SPSSPQYSNTSPQYSPSSPQYSPTSPTY 1478
MQ+LVRRGN+QYPGAKYI+RD GERIDLRFHPK SDLHLQ GYKVERH+ D DLV+FNRQP+LHKMSMMGH+VKVLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAEV NIH+TPRQII PQANKP MGIVQDTLTAVRKMTKRDVFL KEQ+MNL+MFLPTWDGK+P P I+KP+P WTGKQ+FTLIIPGNVN H+THP E++G WISPGDT+V++E+G+L+MGILCKK+LGASAGSLLH+ LE GH G FYGNIQTVIN+WLLLEGHSIGIGDTIADPQTY +I I KAKD+VIEVI KAH+ ELE TPGNTLRQTFENQVNRILNDARDKTGGSAK+SLTE+NN K MVVAGSKGS+IN+SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV+YDGTVRN+VGQ+IQ RYGEDGLAGE VEFQN+ T+KLS+ F+KKFKFDPTNERY +++F +++++++ S +A++E EWEQL DR+ LRQI+P+GESKVVLPCN RMIWN QKIFHINKR TDL+P+KVI+GV+DLLKKCVIV GED+LS+QAN+NAT LFQCLVRST CTK V+E +RL+ EAFEWL+GEIE++F AQ PGEMVGA+AAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTG AARDAEKAKNVLCRLEHTTL+KVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFD T+ISPWLLR+ELDRKRMTDKKLTME I+E+INAGFGDDLNCIFNDDNAEKLVLRIRIMN ++ K +D DE+T DKMEDDMFLRCIEANMLSDMTLQG+EAI+KVYMH P T+ KKRI+IT+ GEFKAIAEWLLETDGT+LM+VLSERDVDPVRT SNDICEIF VLGIEAVRKSVEKE+N V FYG+YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL+DAASHAEVDPMRGVSENIIMGQLPRMGT FDLLLDAEKCK+G+E+ G+ GGM+FG +PS MTP MTPW+ TP Y VWSP GS MTPGGP FSPSG SDASGLSP YS +WSPQPGSPGSP +SPY SPA G SPSYSP+SP YA SP + SPT P YS TS YSPTSP YSP SP Y SP YSPTSP YSP SP YSPTSPSYSPTSP+YSP SPSYS S YSPTSP+YSP S SYSP+ P YS S YSP+S +YSP++ YSPTS +YSP+SP+Y+P +P YSPTS SYS SP+YSPTSPS S SP+YSP S P SP YSPSS YSP+SP + P S YSP+S NY +SP+YSP+SP YSP+S KYSP++ Y+P+S Y S + S+ +YSP+SP YSPTSP++
Sbjct: 392 MQELVRRGNAQYPGAKYIVRDNGERIDLRFHPKPSDLHLQYGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGNVNMVRTHSTHP-DDEDDGVNRWISPGDTKVIVEHGELLMGILCKKSLGASAGSLLHICMLELGHEIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKDDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNMPTVKLSNKAFEKKFKFDPTNERYLKRIFHEDIIKELTESGYVIADLESEWEQLCKDREILRQIFPSGESKVVLPCNFRRMIWNVQKIFHINKRMSTDLSPIKVIQGVKDLLKKCVIVAGEDRLSKQANENATLLFQCLVRSTFCTKYVSEDYRLSSEAFEWLIGEIETRFQQAQVNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAKKRIIITDQGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKHGMEMGGLG--VGMGVAGGMYFG-VGTPS--MTPLMTPWSNQNTPGYGSSVWSPGQVGSSMTPGGPSFSPSGASDASGLSPAYSSSWSPQPGSPGSPGAPLSPY-ASPA--GASPSYSPTSPVYAAPSPSVTPSSPVYSPTGPSYSLTSHNYSPTSPIYSPNSPRY---SPRYSPTSPGYSPPSPRYSPTSPSYSPTSPAYSPNSPSYSVKSQDYSPTSPNYSPASTSYSPSGPVYSVNSQGYSPSSLNYSPSNLVYSPTSQNYSPSSPNYTPPAPPYSPTSHSYSLPYSPASPSISPSSPKYSPSPNYSPTSPSVSGGSPTYSPTSHQYGPKSPQYSPSSTAYSPSSPQH-PGSARYSPSSRNYLSSSPQYSPSSPRYSPSSNKYSPTNITYTPTSSNYSPSSPAYSSSSGPSKYSPTSPNYSPTSPSH 1890 HSP 2 Score: 116.701 bits (291), Expect = 2.883e-22 Identity = 97/197 (49.24%), Postives = 117/197 (59.39%), Query Frame = 0
Query: 1335 SPSYSP-ASPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPKSPGQ-SPVSPSYSPSSPKYSPTSPNYSPASPNYSPTSPNYSPT--SPKYSPTSPTYSPASPKYSPSSPKYSPSSPQYSPSSPQYSNTSPQYSPSSPQYSPTSPTYSPTSPNYSPTSPQYSPASPTYSPTAGSSYSPTSPTYSPASPSYDTEEDD 1527
+PS +P +P + +P Y + S S +P PS+SP S +SP+YS S +SP P SP SP +P SP SP SP YSPTSP Y+ SP +PSSP YSP+ P YS +S YS TSP YSP+SP+YSP YSPTSP YSP SP+YSP SP SYSPTSP YSP SPSY + D
Sbjct: 1496 TPSMTPLMTPWSNQNTPGYGSSVWSPGQVGSSMTPGGPSFSPSGASDASGLSPAYSSS---WSP-QPG-SPGSPG-APLSPYASPAGASPSYSPTSPVYAAPSPSVTPSSPVYSPTGPSYSLTSHNYSPTSPIYSPNSPRYSPR---YSPTSPGYSPPSPRYSPTSP--------SYSPTSPAYSPNSPSYSVKSQD 1675
BLAST of rna polymerase ii largest partial vs. nr
Match: gi|1344794658|ref|XP_023939514.1| (DNA-directed RNA polymerase II subunit RPB1 [Bicyclus anynana]) HSP 1 Score: 2256.1 bits (5845), Expect = 0.000e+0 Identity = 1129/1530 (73.79%), Postives = 1255/1530 (82.03%), Query Frame = 0
Query: 1 MQDLVRRGNSQYPGAKYIIRDTGERIDLRFHPKASDLHLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVMFLPTWDGKLPIPSIIKPKPFWTGKQLFTLIIPGNVNCQNFHATHPGSSENNGPYSWISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENGHLENGLFYGNIQTVINDWLLLEGHSIGIGDTIADPQTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGLAGEYVEFQNLKTIKLSDAVFKKKFKFDPTNERYARKLFTDEVLRDMVGSSEAVAEIEKEWEQLNDDRKSLRQIYPTGESKVVLPCNLERMIWNAQKIFHINKRHQTDLNPLKVIKGVRDLLKKCVIVRGEDKLSQQANDNATTLFQCLVRSTLCTKLVAETHRLTEEAFEWLLGEIESKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGTAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDQTRISPWLLRVELDRKRMTDKKLTMEHISERINAGFGDDLNCIFNDDNAEKLVLRIRIMNADDGKSED-DEQT-DKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMHWPSTDEKKRIVITELGEFKAIAEWLLETDGTALMRVLSERDVDPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLLLDAEKCKYGIEIPMNVGGGGIMGGGGMFFGSAASPSAAMTPGMTPWAEGATPAY---VWSP--TGSGMTPGGPGFSPSGQSDASGLSPGYSPAWSPQPGSPGSPA--MSPYFPSPAHGGLSPSYSPSSPTYAPTSPGLASPTSPGYSPTSPQYSPTSPGYSPTSPNYSPTSPSYSPTSPSY---------------------SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------------SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS---------------------------YSPASPSYSPTSPSYSPTSPSYSPTSPSYSPASPS----------------------------------YSPKSPGQSPVSPSYSPSSPKYSPTSPNYSPAS---PNYSPTSPNYSPTSPKY 1422
M +LVRRGN+QYPGAKYI+RD GERIDLRFHPK SDLHLQ GYKVERH+ D DLV+FNRQP+LHKMSMMGH+VKVLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAEV NIH+TPRQII PQANKP MGIVQDTLTAVRKMTKRDVFL KEQ+MNL+MFLPTWDGK+P P I+KP+P WTGKQ+FTLIIPGNVN H+THP E++GPY ISPGDT+V++E+G+L+MGILCKK+LGASAGSLLH+ LE GH G FYGNIQTVIN+WLLLEGHSIGIGDTIADPQTY +I I KAKD+VIEVI KAH+ ELE TPGNTLRQTFENQVNRILNDARDKTGGSAK+SLTE+NN K MVVAGSKGS+IN+SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV+YDGTVRN+VGQ+IQ RYGEDGLAGE VEFQ+L T+KLS+ F+KKFKFDPTNERY +++F +++++++ S +A++E EWE+L DR+ LRQI+P+GESKVVLPCN RMIWN QKIFHINKR TDL+P+KVI+GV++LL KCVIV G+D+LS+QAN+NAT LFQCLVRSTLCTK V+E HRL+ EAFEWL+GEIE++F AQ PGEMVGA+AAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTG AARDAEKAKNVLCRLEHTTL+KVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFD T+ISPWLLR+ELDRKRMTDKKLTME I+E+INAGFGDDLNCIFNDDNAEKLVLRIRIMN ++ K +D DE+T DKMEDDMFLRCIEANMLSDMTLQG+EAI+KVYMH P T+ KKRI ITE GEFKAIAEWLLETDGT+LM+VLSERDVDP+RT SNDICEIF VLGIEAVRKSVEKE+N V FYG+YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL+DAASHAEVDPMRGVSENIIMGQLPRMGT FDLLLDAEKCK+G+E+ +G G + +MTP MTPW+ TP Y VWSP GS MTPGGP FSPSG SDASGLSP YS +WSPQPGSPGSP +SPY SPA G SPSYSP+SP Y SP L +PTS YSPTSP YSP SP YSPTSPNYSPTSP YSP+SP Y SPTSP YSPTSP+YSPTSPSYS TSPSYSPTS +YSPTSPSYSPTS +Y SPTSP+YSP S SYSP+SP+++P +P+YSPTSPSY+PTSP+ ++ SP+YSPTSP YSP SP YSP+S +YSP+SP YSP SP SP+Y+P+SP YS SP YSP+S YSPTSPNYSPTSP +
Sbjct: 392 MHELVRRGNAQYPGAKYIVRDNGERIDLRFHPKPSDLHLQYGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGNVNMTRTHSTHP-DEEDDGPYCHISPGDTKVIVEHGELLMGILCKKSLGASAGSLLHICMLELGHETAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKDDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQSLPTVKLSNKAFEKKFKFDPTNERYLKRIFNEDIIKELTESGYVIADLESEWERLVKDREVLRQIFPSGESKVVLPCNFRRMIWNVQKIFHINKRQPTDLSPIKVIQGVKELLNKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSSEAFEWLIGEIETRFQQAQVNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAKKRITITEQGEFKAIAEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKHGMEMGGLT-----VGMGVGGGMYFGVGTPSMTPLMTPWSNQNTPGYGSSVWSPGQVGSSMTPGGPSFSPSGASDASGLSPAYSSSWSPQPGSPGSPGAPLSPY-ASPA--GASPSYSPTSPVYVAASPSL-TPTSSHYSPTSPSYSPASPNYSPTSPNYSPTSPIYSPSSPGYSPTSPGYSPSSPSYSPTSPSYSPTSPGYSPTSPAYSPTSPSYSATSPSYSPTSQTYSPTSPSYSPTSAAYSPTSPGYSPSSPSYSPTSPAYSPASLSYSPSSPNFTPAAPTYSPTSPSYTPTSPAYSPTSPSYSPSSPQYSPSPSYSPTSPSHAGGSPTYSPTSPHYSPKSPQYSPSSTAYSPSSPQHPGNTRYSPTSSNYSPSSPNYSPSSPSYSPSSTKYSPT----SPTSPTYTPTSPTYSSNSPAYSPSSIVPSTYSPTSPNYSPTSPSH 1907
BLAST of rna polymerase ii largest partial vs. nr
Match: gi|324120548|dbj|BAJ78665.1| (RNA polymerase II largest subunit, partial [Zorotypus sp. 154-1]) HSP 1 Score: 2253.02 bits (5837), Expect = 0.000e+0 Identity = 1157/1477 (78.33%), Postives = 1274/1477 (86.26%), Query Frame = 0
Query: 1 MQDLVRRGNSQYPGAKYIIRDTGERIDLRFHPKASDLHLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVMFLPTWDGKLPIPSIIKPKPFWTGKQLFTLIIPGNVNCQNFHATHPGSSENNGPYSWISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENGHLENGLFYGNIQTVINDWLLLEGHSIGIGDTIADPQTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGLAGEYVEFQNLKTIKLSDAVFKKKFKFDPTNERYARKLFTDEVLRDMVGSSEAVAEIEKEWEQLNDDRKSLRQIYPTGESKVVLPCNLERMIWNAQKIFHINKRHQTDLNPLKVIKGVRDLLKKCVIVRGEDKLSQQANDNATTLFQCLVRSTLCTKLVAETHRLTEEAFEWLLGEIESKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGTAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDQTRISPWLLRVELDRKRMTDKKLTMEHISERINAGFGDDLNCIFNDDNAEKLVLRIRIMNADDGKSEDDEQT-DKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMHWPSTDEKKRIVITELGEFKAIAEWLLETDGTALMRVLSERDVDPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLLLDAEKCKYGIEIPMNVGGGGIMGGGGMFFGSAASPSAAMTPGMTPWAEGATPAY--VWSP---TGSGMTPGGPGFSPSGQSDASGLSPGYSPAW--SPQPGSPGSPAMSPYFPSPAHGGLSPSYSPSSPTYAPTSPGLASPTSPGYSPTSPQYSPTSPGYSPTSPNYSPTSPSY--------------SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----------------------------PTSPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPKSPGQSPVSPSYSPSSPKYSPTSPNYSPASPNYSPTSPNYSPTSPKYSPTSP 1427
MQ+LVRRGNSQYPGAKYI+RD GERIDLRFHPK SDLHLQCGYKVERHI DGDLV+FNRQP+LHKMSMMGH+VKVLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAEV N+H+TPRQII PQANKP MGIVQDTLTAVRKMTKRDVFL+KEQMMNL+MFLP W+G +P P+I+KPKP WTGKQ+F+LIIPGNVN H+THP E++GPY WISPGDT+V++E+G+L+MGILCKKTLG SAGSLLH+ LE GH G FYGNIQTV+N+WLLLEGHSIGIGDTIADPQTY +I IKKAK++VIEVI KAH+ ELE TPGNTLRQTFENQVNRILNDARDKTGGSAK+SLTE+NN K MVV+GSKGS+IN+SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF+FHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV+YDGTVRN+VGQ+IQ RYGEDGL GE VEFQNL TIKLS+ F++KFKFDPTNER+ R++F +++LRD++GS + ++E+EKEWEQL DR++LRQI+P+GESKVVLPCNL+RMIWNA KIFHINKR TDL PLKVI+GV DLLKKCVIV GED LS QAN+NAT LFQCLVRSTLCTK V+E RL+ EAFEWL+GEIE++F AQ +PGEMVGA+AAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTG AARDAEKAKNVLCRLEHTTL+KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFD TRISPWLLR+ELDRKRMTDKKLTME I+E+INAGFGDDLNCIFNDDNAEKLVLRIRIMN+DD K +++E+T DKMEDDMFLRCIEANMLSDMTLQG+EAI KVYMH P TD KKRIVITE GEFKAIAEWLLETDGT++M+VLSERDVDPVRT SNDICEIFSVLGIEAVRKSVEKE+NTV FYG+YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPR+GT AFDLLLDAEKCKYGIEIPM++ G GIMGG GMFFGSA++PS +P MTPW +GATPAY +SP GSG TPGGP FSPSG SDASG SP YS W P S PAMSPY PSP G SPSYSPSSPTYAP SP L +P SP YSPTSP YSPTS YSPTSPNYSP SPSY SPT+P YSPTSP+YSPTSPSYSPTSP+YS T+PSYSPTSPSY PTSP YSPTSP+YSPTSPS+SP S +YSP SP+YSP SPSYSP+SP ++ P+SP YSP SP+YSPTSPS+ +SP Y+P +P YSP SP+YSP +S +YSPTSPNYSP+SP YSP+SP YS +S KYSPTSP
Sbjct: 394 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKTSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWNGVMPQPAIMKPKPLWTGKQVFSLIIPGNVNMIRTHSTHP-DEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFERKFKFDPTNERHLRRIFNEDILRDLMGSGDVISELEKEWEQLCKDREALRQIFPSGESKVVLPCNLQRMIWNAHKIFHINKRAPTDLGPLKVIQGVNDLLKKCVIVAGEDHLSVQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLVGEIENRFQQAQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIGEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKCKYGIEIPMSI-GPGIMGGAGMFFGSASTPS--QSPSMTPWGQGATPAYSSSYSPGNLMGSGATPGGPSFSPSGASDASGYSPNYS-QWSPQPGSPSSPGPAMSPYIPSPV-GAHSPSYSPSSPTYAPPSPSL-TPASPNYSPTSPTYSPTSTNYSPTSPNYSPNSPSYPQNSPLYSPSSPSYSPTTPLYSPTSPAYSPTSPSYSPTSPNYS-TNPSYSPTSPSYVPTSPVYSPTSPTYSPTSPSFSPKSSTYSPASPTYSPASPSYSPSSPQFTPGSPSFSSTSPSYSPSSPQYSPGSPSYSPSSPKYSPTSPNYSPTSPSFVGSSPQYTPATPQYSPTSPTYSPSQSYSPSSPQHTPSTSTRYSPTSPNYSPSSPTYSPSSPQYSLSSSKYSPTSP 1862 HSP 2 Score: 183.341 bits (464), Expect = 1.358e-42 Identity = 161/343 (46.94%), Postives = 201/343 (58.60%), Query Frame = 0
Query: 1234 SPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPKSPGQ--------------SPVSPSYSPSSPKYSPTSPNYSPASPNYSPTSPNYSPTSPKYSPTSPTYSPASPKYSPSSPKYSPSSPQYSPSSPQYSNTSPQYSPSSP-----------------------------------QYSPTSPTYSPTSPNYSPTSPQYSPASPT-------------YSPTAGSSYSPTSP 1512
S ++PS SP+ +P +P+YS SYSP + S +P SPS + + YSP +SP S S P+ SP PS SPSYSP+SP+Y+P SPS +PASP+YSPTSP+YSPTS +YSPTSP+YSP SPSY SP SP SP+YSP+SP YSPTSPNYS +P+YSPTSP+Y PTSP YSPTSPTYSP SP +SP S YSP+SP YSP+SP YS +SPQ++P SP YSPTSP++ +SP Y+P +PQYSP SPT ++P+ + YSPTSP
Sbjct: 1496 SASTPSQSPSMTPWGQGATPAYSS---SYSPGNLMGSGATPGGPSFSPSGASDASGYSPNYSQWSPQPGSPSSPGPAMSPYIPSPVGAHSPSYSPSSPTYAPPSPSLTPASPNYSPTSPTYSPTSTNYSPTSPNYSPNSPSYPQNSPLYSPSSPSYSPTTPLYSPTSPAYSPTSPSYSPTSPNYS-TNPSYSPTSPSYVPTSPVYSPTSPTYSPTSPSFSPKSSTYSPASPTYSPASPSYSPSSPQFTPGSPSFSSTSPSYSPSSPQYSPGSPSYSPSSPKYSPTSPNYSPTSPSFVGSSPQYTPATPQYSPTSPTYSPSQSYSPSSPQHTPSTSTRYSPTSP 1834
BLAST of rna polymerase ii largest partial vs. nr
Match: gi|1121092489|ref|XP_019536864.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Aedes albopictus] >gi|1121119887|ref|XP_019548827.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Aedes albopictus]) HSP 1 Score: 2236.84 bits (5795), Expect = 0.000e+0 Identity = 1133/1508 (75.13%), Postives = 1243/1508 (82.43%), Query Frame = 0
Query: 1 MQDLVRRGNSQYPGAKYIIRDTGERIDLRFHPKASDLHLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVMFLPTWDGKLPIPSIIKPKPFWTGKQLFTLIIPGNVNCQNFHATHPGSSENNGPYSWISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENGHLENGLFYGNIQTVINDWLLLEGHSIGIGDTIADPQTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGLAGEYVEFQNLKTIKLSDAVFKKKFKFDPTNERYARKLFTDEVLRDMVGSSEAVAEIEKEWEQLNDDRKSLRQIYPTGESKVVLPCNLERMIWNAQKIFHINKRHQTDLNPLKVIKGVRDLLKKCVIVRGEDKLSQQANDNATTLFQCLVRSTLCTKLVAETHRLTEEAFEWLLGEIESKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGTAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDQTRISPWLLRVELDRKRMTDKKLTMEHISERINAGFGDDLNCIFNDDNAEKLVLRIRIMNADDGKSEDDEQ--TDKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMHWPSTDEKKRIVITELGEFKAIAEWLLETDGTALMRVLSERDVDPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLLLDAEKCKYGIEIPMNVGGGGIMGGGGMFFGSAASPSAAMTPGMTPWAEGATPAYV-WSPTG--SGMTPGGPGFSPSGQSDASGLSPGYSPAWSPQPGSPGSPAMSPYFPSPAHGGLSPSYSPSSPTYAPTSPGLAS----PTSPGYSPTSPQYSPTSPGYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-----------------------------------YSPTSPSYSPTSPSYSPTSPSYSPT---------------------------SPSYSPTSPSYSPTSPSYSP----------------------ASPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPKSPGQSPVSPSYSPSSPKYSPTSPNYSPASPNYSPTSPNY 1415
MQ+LVRRGNSQYPGAKYI+RD GERIDLRFHPK+SDLHLQCGYKVERH+ D DLV+FNRQP+LHKMSMMGH+VKVLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAE+ NIH+TPRQII PQANKP MGIVQDTLTAVRKMTKRDVFL+KEQMMNL+MFLPTWDGK+P P I+KPKP WTGKQ+FTLIIPGNVN H+THP E++GPY WISPGDT+V++E+G+LIMGILCKKTLG SAGSLLH+ LE GH G FYGNIQTV+N+WLLLEGHSIGIGDTIADPQTYA+I I+KAK++VI VI KAH+ ELE TPGNTLRQTFENQVNRILNDARDKTGGSAK+SLTE+NN K MVV+GSKGS+IN+SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP+EFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRN+VGQ+IQ RYGEDGL GE VEFQNL TIKLS+ VF+K+++FDPTNER R++F ++V++++ S + + EIE E+EQL DR++LRQI+P G+SKVVLPCNL+RMIWN QKIFHINKR TDL+PLKVI GVRDLL KCVIV G D+LS+QAN+NAT LFQCLVRSTLCTK VAE RL EAFEWL+GEIE++F AQ PGEMVGA+AAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK+PKAPSLTVFLTG AARDAEKAKNVLCRLEHTTL+KVTANTAIYYDPDPQ TVIAEDQEFVNVYYEMPDFD TRISPWLLR+ELDRKRMTDKKLTME I+E+INAGFGDDLNCIFNDDNA+KLVLRIRIMN DD K +++E+ DKMEDDMFLRCIEANMLSDMTLQG+EAI KVYMH P TD K+RIVIT GEFKAI EWLLETDGTA+M+VLSERDVDPVRT+SNDICEIF VLGIEAVRKSVEKE+N V FYG+YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL DAA+HAEVDPMRGVSENIIMGQLPRMGT FDLLLDAEKCK G+EIP IMGG GMFFG A+PS M+P MTPW + TP Y WSP+G SGMTPGGP FSPS QSD SG+ SP WSP PGSP SP S P+ SPSYSPSSP YA SPG AS PTSP YSPTSP YSPTSP YSPTSPNYSPTSP YSPTSPSYSPTSP YSP+ P Y P+SP+YSPTSPSYSPTSP YSPTSPSYSPTSP+ Y+P +PSYSPTSP+YSP+SP YSPT SP Y+P SP YSPTSP YSP +SP+YSP S +YSP SYSP S YSP SP Y+P SP SP SP+YSP+ YSP+ SPASP YSPTSP+Y
Sbjct: 392 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPTWDGKMPQPCILKPKPLWTGKQIFTLIIPGNVNMIRTHSTHP-DEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHIVFLELGHEIAGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYAEIQRAIRKAKEDVIGVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKVFEKRYRFDPTNERNLRRVFNEDVIKELTESPDVIQEIEAEYEQLLRDREALRQIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRGTTDLSPLKVIHGVRDLLTKCVIVAGTDRLSKQANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGEIETRFQQAQCNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKRRIVITPEGEFKAIGEWLLETDGTAMMKVLSERDVDPVRTASNDICEIFQVLGIEAVRKSVEKEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLNDAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKLGMEIPHT----SIMGGSGMFFGPGATPS--MSPAMTPWQQSQTPGYCDWSPSGPPSGMTPGGPSFSPSAQSDVSGM----SPLWSPMPGSPSSPGPSMSPYFPSSPSASPSYSPSSPNYAAASPGGASPAYSPTSPSYSPTSPTYSPTSPRYSPTSPNYSPTSPQYSPTSPSYSPTSPHYSPSQP-YGPSSPAYSPTSPSYSPTSP-YSPTSPSYSPTSPAYSPTSPSYSPSSNSYSPTSPSYSPTSPSYSPTSPNYTPATPSYSPTSPNYSPSSPHYSPTSPSYSPSSPKYSPTSPSYSPTSPSYGGSPQYTPASPQYSPTSPKYSPTSPSYSPSSPQHSPGGSNNFMSSSPTYSP-SATYSPNMSSYSPGSQKYSPTSPVYTPTSPNYSPSSPAYSPTGQGYSPS----SPASPTYSPTSPSY 1881 HSP 2 Score: 235.728 bits (600), Expect = 1.025e-58 Identity = 205/401 (51.12%), Postives = 246/401 (61.35%), Query Frame = 0
Query: 1210 PGYSPT-SPQYSPTSPGYSPTSPNYSPTSP--SYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPKSPGQSPVSPSYSPSSPKYSPTSP-----------------------------------NYSPASPNYSPTSPNYSPTSPKYSPTSPTYSPASPKYSP-------------SSPKYSPSSPQYSPSSPQYS----------------------NTSPQYSPSS------PQYSPTSPTYSPTSPNYSPTSPQYSPASPTYSPTAGSSYSPT---SPTYSPASPSYDTEEDD 1527
PG +P+ SP +P +P ++SP+ P +P PS+SP++ S S SP +SP S S PS SP PS SPSYSP+SP+Y+ SP + SP+YSPTSPSYSPTSP+YSPTSP YSPTSP+YSP SP YSPTSPSYSPTSP YSP+ P Y P+SP+YSP SP SP SP YSP+SP YSPTSP NY+PA+P+YSPTSPNYSP+SP YSPTSP+YSP+SPKYSP SP+Y+P+SPQYSP+SP+YS ++SP YSPS+ YSP S YSPTSP Y+PTSP YSP+SP YSPT G YSP+ SPTYSP SPSY+ DD
Sbjct: 1492 PGATPSMSPAMTPWQQSQTPGYCDWSPSGPPSGMTPGGPSFSPSAQSDVSGMSPLWSPMPGSPSSPGPSMSPYFPSSPSASPSYSPSSPNYAAASPGGA--SPAYSPTSPSYSPTSPTYSPTSPRYSPTSPNYSPTSPQYSPTSPSYSPTSPHYSPSQP-YGPSSPAYSPTSPSYSPTSP-YSPTSPSYSPTSPAYSPTSPSYSPSSNSYSPTSPSYSPTSPSYSPTSPNYTPATPSYSPTSPNYSPSSPHYSPTSPSYSPSSPKYSPTSPSYSPTSPSYGGSPQYTPASPQYSPTSPKYSPTSPSYSPSSPQHSPGGSNNFMSSSPTYSPSATYSPNMSSYSPGSQKYSPTSPVYTPTSPNYSPSSPAYSPT-GQGYSPSSPASPTYSPTSPSYEDSPDD 1887
BLAST of rna polymerase ii largest partial vs. nr
Match: gi|765338906|ref|XP_011493480.1| (DNA-directed RNA polymerase II subunit RPB1 [Aedes aegypti] >gi|1218240473|ref|XP_021701209.1| DNA-directed RNA polymerase II subunit RPB1 [Aedes aegypti] >gi|403182441|gb|EJY57389.1| AAEL017363-PA [Aedes aegypti]) HSP 1 Score: 2235.3 bits (5791), Expect = 0.000e+0 Identity = 1132/1508 (75.07%), Postives = 1243/1508 (82.43%), Query Frame = 0
Query: 1 MQDLVRRGNSQYPGAKYIIRDTGERIDLRFHPKASDLHLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVMFLPTWDGKLPIPSIIKPKPFWTGKQLFTLIIPGNVNCQNFHATHPGSSENNGPYSWISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENGHLENGLFYGNIQTVINDWLLLEGHSIGIGDTIADPQTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGLAGEYVEFQNLKTIKLSDAVFKKKFKFDPTNERYARKLFTDEVLRDMVGSSEAVAEIEKEWEQLNDDRKSLRQIYPTGESKVVLPCNLERMIWNAQKIFHINKRHQTDLNPLKVIKGVRDLLKKCVIVRGEDKLSQQANDNATTLFQCLVRSTLCTKLVAETHRLTEEAFEWLLGEIESKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGTAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDQTRISPWLLRVELDRKRMTDKKLTMEHISERINAGFGDDLNCIFNDDNAEKLVLRIRIMNADDGKSEDDEQ--TDKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMHWPSTDEKKRIVITELGEFKAIAEWLLETDGTALMRVLSERDVDPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLLLDAEKCKYGIEIPMNVGGGGIMGGGGMFFGSAASPSAAMTPGMTPWAEGATPAYV-WSPTG--SGMTPGGPGFSPSGQSDASGLSPGYSPAWSPQPGSPGSPAMSPYFPSPAHGGLSPSYSPSSPTYAPTSPGLAS----PTSPGYSPTSPQYSPTSPGYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-----------------------------------YSPTSPSYSPTSPSYSPTSPSYSPT---------------------------SPSYSPTSPSYSPTSPSYSP----------------------ASPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPKSPGQSPVSPSYSPSSPKYSPTSPNYSPASPNYSPTSPNY 1415
MQ+LVRRGNSQYPGAKYI+RD GERIDLRFHPK+SDLHLQCGYKVERH+ D DLV+FNRQP+LHKMSMMGH+VKVLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAE+ NIH+TPRQII PQANKP MGIVQDTLTAVRKMTKRDVFL+KEQMMNL+MFLPTWDGK+P P I+KPKP WTGKQ+FTLIIPGNVN H+THP E++GPY WISPGDT+V++E+G+LIMGILCKKTLG SAGSLLH+ LE GH G FYGNIQTV+N+WLLLEGHSIGIGDTIADPQTYA+I I+KAK++VI VI KAH+ ELE TPGNTLRQTFENQVNRILNDARDKTGGSAK+SLTE+NN K MVV+GSKGS+IN+SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP+EFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRN+VGQ+IQ RYGEDGL GE VEFQNL TIKLS+ VF+K+++FDPTNER R++F ++V++++ S + + EIE E+EQL DR++LRQI+P G+SKVVLPCNL+RMIWN QKIFHINKR TDL+PLKVI GVRDLL KCVIV G D+LS+QAN+NAT LFQCLVRSTLCTK VAE RL EAFEWL+GEIE++F AQ PGEMVGA+AAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK+PKAPSLTVFLTG AARDAEKAKNVLCRLEHTTL+KVTANTAIYYDPDPQ TVIAEDQEFVNVYYEMPDFD TRISPWLLR+ELDRKRMTDKKLTME I+E+INAGFGDDLNCIFNDDNA+KLVLRIRIMN DD K +++E+ DKMEDDMFLRCIEANMLSDMTLQG+EAI KVYMH P TD K+RIVIT GEFKAI EWLLETDGTA+M+VLSERDVDPVRT+SNDICEIF VLGIEAVRKSVEKE+N V FYG+YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL DAA+HAEVDPMRGVSENIIMGQLPRMGT FDLLLDAEKCK G+EIP IMGG GMFFG A+PS M+P MTPW + TP Y WSP+G SGMTPGGP FSPS QSD SG+ SP WSP PGSP SP S P+ SPSYSPSSP YA SPG AS PTSP YSPTSP YSPTSP YSPTSPNYSPTSP YSPTSPSYSPTSP YSP+ P Y P+SP+YSPTSPSYSPTSP YSPTSPSYSPTSP+ Y+P +PSYSPTSP+YSP+SP YSPT SP Y+P SP YSPTSP YSP +SP+YSP S +YSP SYSP S YSP SP Y+P SP SP SP++SP+ YSP+ SPASP YSPTSP+Y
Sbjct: 392 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPTWDGKMPQPCILKPKPLWTGKQIFTLIIPGNVNMIRTHSTHP-DEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHIVFLELGHEIAGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYAEIQRAIRKAKEDVIGVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKVFEKRYRFDPTNERNLRRVFNEDVIKELTESPDVIQEIEAEYEQLLRDREALRQIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRGTTDLSPLKVIHGVRDLLTKCVIVAGTDRLSKQANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGEIETRFQQAQCNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKRRIVITPEGEFKAIGEWLLETDGTAMMKVLSERDVDPVRTASNDICEIFQVLGIEAVRKSVEKEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLNDAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKLGMEIPHT----SIMGGSGMFFGPGATPS--MSPAMTPWQQSQTPGYCDWSPSGPPSGMTPGGPSFSPSAQSDVSGM----SPLWSPMPGSPSSPGPSMSPYFPSSPSASPSYSPSSPNYAAASPGGASPAYSPTSPSYSPTSPTYSPTSPRYSPTSPNYSPTSPQYSPTSPSYSPTSPHYSPSQP-YGPSSPAYSPTSPSYSPTSP-YSPTSPSYSPTSPAYSPTSPSYSPSSNSYSPTSPSYSPTSPSYSPTSPNYTPATPSYSPTSPNYSPSSPHYSPTSPSYSPSSPKYSPTSPSYSPTSPSYGGSPQYTPASPQYSPTSPKYSPTSPSYSPSSPQHSPGGSNNFMSSSPTYSP-SATYSPNMSSYSPGSQKYSPTSPVYTPTSPNYSPSSPAFSPTGQGYSPS----SPASPTYSPTSPSY 1881 HSP 2 Score: 234.572 bits (597), Expect = 2.388e-58 Identity = 204/401 (50.87%), Postives = 246/401 (61.35%), Query Frame = 0
Query: 1210 PGYSPT-SPQYSPTSPGYSPTSPNYSPTSP--SYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPKSPGQSPVSPSYSPSSPKYSPTSP-----------------------------------NYSPASPNYSPTSPNYSPTSPKYSPTSPTYSPASPKYSP-------------SSPKYSPSSPQYSPSSPQYS----------------------NTSPQYSPSS------PQYSPTSPTYSPTSPNYSPTSPQYSPASPTYSPTAGSSYSPT---SPTYSPASPSYDTEEDD 1527
PG +P+ SP +P +P ++SP+ P +P PS+SP++ S S SP +SP S S PS SP PS SPSYSP+SP+Y+ SP + SP+YSPTSPSYSPTSP+YSPTSP YSPTSP+YSP SP YSPTSPSYSPTSP YSP+ P Y P+SP+YSP SP SP SP YSP+SP YSPTSP NY+PA+P+YSPTSPNYSP+SP YSPTSP+YSP+SPKYSP SP+Y+P+SPQYSP+SP+YS ++SP YSPS+ YSP S YSPTSP Y+PTSP YSP+SP +SPT G YSP+ SPTYSP SPSY+ DD
Sbjct: 1492 PGATPSMSPAMTPWQQSQTPGYCDWSPSGPPSGMTPGGPSFSPSAQSDVSGMSPLWSPMPGSPSSPGPSMSPYFPSSPSASPSYSPSSPNYAAASPGGA--SPAYSPTSPSYSPTSPTYSPTSPRYSPTSPNYSPTSPQYSPTSPSYSPTSPHYSPSQP-YGPSSPAYSPTSPSYSPTSP-YSPTSPSYSPTSPAYSPTSPSYSPSSNSYSPTSPSYSPTSPSYSPTSPNYTPATPSYSPTSPNYSPSSPHYSPTSPSYSPSSPKYSPTSPSYSPTSPSYGGSPQYTPASPQYSPTSPKYSPTSPSYSPSSPQHSPGGSNNFMSSSPTYSPSATYSPNMSSYSPGSQKYSPTSPVYTPTSPNYSPSSPAFSPT-GQGYSPSSPASPTYSPTSPSYEDSPDD 1887
BLAST of rna polymerase ii largest partial vs. nr
Match: gi|1000210824|gb|KXJ80723.1| (hypothetical protein RP20_CCG023775 [Aedes albopictus]) HSP 1 Score: 2234.91 bits (5790), Expect = 0.000e+0 Identity = 1132/1508 (75.07%), Postives = 1242/1508 (82.36%), Query Frame = 0
Query: 1 MQDLVRRGNSQYPGAKYIIRDTGERIDLRFHPKASDLHLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVMFLPTWDGKLPIPSIIKPKPFWTGKQLFTLIIPGNVNCQNFHATHPGSSENNGPYSWISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENGHLENGLFYGNIQTVINDWLLLEGHSIGIGDTIADPQTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGLAGEYVEFQNLKTIKLSDAVFKKKFKFDPTNERYARKLFTDEVLRDMVGSSEAVAEIEKEWEQLNDDRKSLRQIYPTGESKVVLPCNLERMIWNAQKIFHINKRHQTDLNPLKVIKGVRDLLKKCVIVRGEDKLSQQANDNATTLFQCLVRSTLCTKLVAETHRLTEEAFEWLLGEIESKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGTAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDQTRISPWLLRVELDRKRMTDKKLTMEHISERINAGFGDDLNCIFNDDNAEKLVLRIRIMNADDGKSEDDEQ--TDKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMHWPSTDEKKRIVITELGEFKAIAEWLLETDGTALMRVLSERDVDPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLLLDAEKCKYGIEIPMNVGGGGIMGGGGMFFGSAASPSAAMTPGMTPWAEGATPAYV-WSPTG--SGMTPGGPGFSPSGQSDASGLSPGYSPAWSPQPGSPGSPAMSPYFPSPAHGGLSPSYSPSSPTYAPTSPGLAS----PTSPGYSPTSPQYSPTSPGYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-----------------------------------YSPTSPSYSPTSPSYSPTSPSYSPT---------------------------SPSYSPTSPSYSPTSPSYSP----------------------ASPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPKSPGQSPVSPSYSPSSPKYSPTSPNYSPASPNYSPTSPNY 1415
MQ+LVRRGNSQYPGAKYI+RD GERIDLRFHPK+SDLHLQCGYKVERH+ D DLV+FNRQP+LHKMSMMGH+VKVLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAE+ NIH+TPRQII PQANKP MGIVQDTLTAVRKMTKRDVFL+KEQMMNL+MFLPTWDGK+P P I+KPKP WTGKQ+FTLIIPGNVN H+THP E++GPY WISPGDT+V++E+G+LIMGILCKKTLG SAGSLLH+ LE GH G FYGNIQTV+N+WLLLEGHSIGIGDTIADPQTYA+I I+KAK++VI VI KAH+ ELE TPGNTLRQTFENQVNRILNDARDKTGGSAK+SLTE+NN K MVV+GSKGS+IN+SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP+EFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRN+VGQ+IQ RYGEDGL GE VEFQNL TIKLS+ VF+K+++FDPTNER R++F ++V++++ S + + EIE E+EQL DR++LRQI+P G+SKVVLPCNL+RMIWN QKIFHINKR TDL+PLKVI GVRDLL KCVIV G D+LS+QAN+NAT LFQCLVRSTLCTK VAE RL EAFEWL+GEIE++F AQ PGEMVGA+AAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK+PKAPSLTVFLTG AARDAEKAKNVLCRLEHTTL+KVTANTAIYYDPDPQ TVIAEDQEFVNVYYEMPDFD TRISPWLLR+ELDRKRMTDKKLTME I+E+INAGFGDDLNCIFNDDNA+KLVLRIRIMN DD K +++E+ DKMEDDMFLRCIEANMLSDMTLQG+EAI KVYMH P TD K+RIVIT GEFKAI EWLLETDGTA+M+VLSERDVDPVRT+SNDICEIF VLGIEAVRKSVEKE+N V FYG+YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS EETVDVL DAA+HAEVDPMRGVSENIIMGQLPRMGT FDLLLDAEKCK G+EIP IMGG GMFFG A+PS M+P MTPW + TP Y WSP+G SGMTPGGP FSPS QSD SG+ SP WSP PGSP SP S P+ SPSYSPSSP YA SPG AS PTSP YSPTSP YSPTSP YSPTSPNYSPTSP YSPTSPSYSPTSP YSP+ P Y P+SP+YSPTSPSYSPTSP YSPTSPSYSPTSP+ Y+P +PSYSPTSP+YSP+SP YSPT SP Y+P SP YSPTSP YSP +SP+YSP S +YSP SYSP S YSP SP Y+P SP SP SP+YSP+ YSP+ SPASP YSPTSP+Y
Sbjct: 392 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPTWDGKMPQPCILKPKPLWTGKQIFTLIIPGNVNMIRTHSTHP-DEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHIVFLELGHEIAGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYAEIQRAIRKAKEDVIGVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKVFEKRYRFDPTNERNLRRVFNEDVIKELTESPDVIQEIEAEYEQLLRDREALRQIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRGTTDLSPLKVIHGVRDLLTKCVIVAGTDRLSKQANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGEIETRFQQAQCNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKRRIVITPEGEFKAIGEWLLETDGTAMMKVLSERDVDPVRTASNDICEIFQVLGIEAVRKSVEKEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSLEETVDVLNDAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKLGMEIPHT----SIMGGSGMFFGPGATPS--MSPAMTPWQQSQTPGYCDWSPSGPPSGMTPGGPSFSPSAQSDVSGM----SPLWSPMPGSPSSPGPSMSPYFPSSPSASPSYSPSSPNYAAASPGGASPAYSPTSPSYSPTSPTYSPTSPRYSPTSPNYSPTSPQYSPTSPSYSPTSPHYSPSQP-YGPSSPAYSPTSPSYSPTSP-YSPTSPSYSPTSPAYSPTSPSYSPSSNSYSPTSPSYSPTSPSYSPTSPNYTPATPSYSPTSPNYSPSSPHYSPTSPSYSPSSPKYSPTSPSYSPTSPSYGGSPQYTPASPQYSPTSPKYSPTSPSYSPSSPQHSPGGSNNFMSSSPTYSP-SATYSPNMSSYSPGSQKYSPTSPVYTPTSPNYSPSSPAYSPTGQGYSPS----SPASPTYSPTSPSY 1881 HSP 2 Score: 235.728 bits (600), Expect = 1.008e-58 Identity = 205/401 (51.12%), Postives = 246/401 (61.35%), Query Frame = 0
Query: 1210 PGYSPT-SPQYSPTSPGYSPTSPNYSPTSP--SYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPKSPGQSPVSPSYSPSSPKYSPTSP-----------------------------------NYSPASPNYSPTSPNYSPTSPKYSPTSPTYSPASPKYSP-------------SSPKYSPSSPQYSPSSPQYS----------------------NTSPQYSPSS------PQYSPTSPTYSPTSPNYSPTSPQYSPASPTYSPTAGSSYSPT---SPTYSPASPSYDTEEDD 1527
PG +P+ SP +P +P ++SP+ P +P PS+SP++ S S SP +SP S S PS SP PS SPSYSP+SP+Y+ SP + SP+YSPTSPSYSPTSP+YSPTSP YSPTSP+YSP SP YSPTSPSYSPTSP YSP+ P Y P+SP+YSP SP SP SP YSP+SP YSPTSP NY+PA+P+YSPTSPNYSP+SP YSPTSP+YSP+SPKYSP SP+Y+P+SPQYSP+SP+YS ++SP YSPS+ YSP S YSPTSP Y+PTSP YSP+SP YSPT G YSP+ SPTYSP SPSY+ DD
Sbjct: 1492 PGATPSMSPAMTPWQQSQTPGYCDWSPSGPPSGMTPGGPSFSPSAQSDVSGMSPLWSPMPGSPSSPGPSMSPYFPSSPSASPSYSPSSPNYAAASPGGA--SPAYSPTSPSYSPTSPTYSPTSPRYSPTSPNYSPTSPQYSPTSPSYSPTSPHYSPSQP-YGPSSPAYSPTSPSYSPTSP-YSPTSPSYSPTSPAYSPTSPSYSPSSNSYSPTSPSYSPTSPSYSPTSPNYTPATPSYSPTSPNYSPSSPHYSPTSPSYSPSSPKYSPTSPSYSPTSPSYGGSPQYTPASPQYSPTSPKYSPTSPSYSPSSPQHSPGGSNNFMSSSPTYSPSATYSPNMSSYSPGSQKYSPTSPVYTPTSPNYSPSSPAYSPT-GQGYSPSSPASPTYSPTSPSYEDSPDD 1887
BLAST of rna polymerase ii largest partial vs. nr
Match: gi|1059407296|ref|XP_017776551.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Nicrophorus vespilloides]) HSP 1 Score: 2207.18 bits (5718), Expect = 0.000e+0 Identity = 1117/1507 (74.12%), Postives = 1247/1507 (82.75%), Query Frame = 0
Query: 1 MQDLVRRGNSQYPGAKYIIRDTGERIDLRFHPKASDLHLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVMFLPTWDGKLPIPSIIKPKPFWTGKQLFTLIIPGNVNCQNFHATHPGSSENNGPYSWISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENGHLENGLFYGNIQTVINDWLLLEGHSIGIGDTIADPQTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGLAGEYVEFQNLKTIKLSDAVFKKKFKFDPTNERYARKLFTDEVLRDMVGSSEAVAEIEKEWEQLNDDRKSLRQIYPTGESKVVLPCNLERMIWNAQKIFHINKRHQTDLNPLKVIKGVRDLLKKCVIVRGEDKLSQQANDNATTLFQCLVRSTLCTKLVAETHRLTEEAFEWLLGEIESKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGTAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDQTRISPWLLRVELDRKRMTDKKLTMEHISERINAGFGDDLNCIFNDDNAEKLVLRIRIMNADDGKSEDD--EQTDKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMHWPSTDEKKRIVITELGEFKAIAEWLLETDGTALMRVLSERDVDPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLLLDAEKCKYGIEIPMNVGGGGIMGGGGMFFGSAASPSAAMTPG--MTPWAEGATP---AYVWSP---TGSGMTPGGPGFSPSGQSDASGLSPGYSPAWSPQPG----------------------SPGSPAMS-----PYFPSPAHGGLSPSYSPSSPTYAPTSPG-------------LASPTSPGYSPTSPQYSPTSPGYSPTSP---------------------NYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-----------------------------------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPKSPGQSPVSPSYSPSSPKYSPTSPN 1400
M +LV+RGNSQYPGAKYI+RD GERIDLRFHPK+SDLHLQCGYKVERHI DGDLV+FNRQP+LHKMSMMGH+VKVLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAEV N+H+TPRQII PQANKP MGIVQDTLTAVRKMTKRDVF+ EQ+MNL+MFLP WDGK+P P+I+KPKP WTGKQ+F+LIIPGNVN H+THP E++GPY WISPGDT+V++E+G+L+MGILCKKTLG SAGSLLH+ LE GH G FYGNIQTVIN+WLLLEGHSIGIGDTIADPQTY +I IKKAK++VIEVI KAH+ ELE TPGNTLRQTFENQVNRILNDARDKTGGSAK+SLTE+NN K MVV+G+KGS+IN+SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV+YDGTVRN+VGQ+IQ RYGEDGL GE VEFQ L TIKLS+ F++KF+FD +NERY R++F ++V++ M+GS + ++E+E+EW+QL DR++LRQI+P+G+ KVVLPCNL+RMIWN QKIFHINKR TDL+P++VI+GVR+LL++C+IV G D+LS QAN+NAT LFQCLVRSTLCTK V+E RL+ EAFEWL+GEIE++F AQA PGEMVGA+AAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTG AARDAEKAKNVLCRLEHTTL+KVTANTAIYYDPDPQNTVI EDQEFVNVYYEMPDFD TRISPWLLR+ELDRKRMTDKKLTME I+E+INAGFGDDLNCIFNDDNAEKLVLRIRIMN+DDGK D E DKM+DDMFLRCIEANMLSDMTLQG+EAI+KVYMH P TD KKRIVITE GEFKAIAEWLLETDGT++M+VLSERDVDPVRT SNDICEIF+VLGIEAVRKSVEKE+N V FYG+YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL+DAASHAEVDPMRGVSENIIMGQLPRMGT FDLLLDA+KCK I IP G + GMFFGSAA+PS M+PG MTPW +GATP VW+ GSGMTPGGP FSPS SDASG+SPGYS W+ PG P SP M+ SP + SP+YSP+SP Y+PTSPG SPTSPGYSPTSP YSPTSP YSPTSP NYSPTSP+YSPTSP YSPTSP+YSP+SP+YSPTSP YSP+SPSYSP+SP Y+ SP+ YSPTSPS++ SP YSPTSPSYSPTSP+YSP+SP ++P + S YSP+SP+YSP SP+YSPTSP YSP S YSPTSP+Y+P SPSYSP SP SP P YSPSSP YSPTSPN
Sbjct: 394 MLELVQRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITHEQIMNLLMFLPIWDGKMPRPAILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHP-DEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGAKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQTLPTIKLSNKAFERKFRFDASNERYLRRVFNEDVIKQMMGSGDVISELEREWDQLQKDREALRQIFPSGDPKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPIRVIQGVRELLQRCIIVAGTDRLSVQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDGKFGDSADEDVDKMDDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTDSKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFAVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDADKCKSAIAIPQTQGAD--LMNSGMFFGSAATPS--MSPGSSMTPWNQGATPYNAGSVWNTPNILGSGMTPGGPSFSPSAASDASGMSPGYS--WAQSPGMSPFGASPRAASPSYSPASPSYQPNSPCMTPGSSGYSPSSPGYSPTSPNYSPTSPNYSPTSPGYSPTSPSYSPTSPSYSPTSPGYSPTSPNYSPTSPSYSPTSPGYSPTSPSYSPTSSSYSPTSPNYSPTSPNYSPTSPGYSPTSPTYSPSSPNYSPTSPGYSPSSPSYSPSSPRYAAHSPAYSPNSPSYSPSSPQYSPASPSYSPSSPKYSPTSPNYSPTSPSFAGGSPQYSPTSPSYSPTSPNYSPSSPQHTPAASSRYSPSSPNYSPTSPNYSPTSPQYSPHSTKYSPTSPTYTPTSPSYSPASPVFSPQPPRYSPSSPGYSPTSPN 1893
BLAST of rna polymerase ii largest partial vs. nr
Match: gi|751451105|ref|XP_011179865.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Zeugodacus cucurbitae]) HSP 1 Score: 2203.33 bits (5708), Expect = 0.000e+0 Identity = 1110/1507 (73.66%), Postives = 1236/1507 (82.02%), Query Frame = 0
Query: 1 MQDLVRRGNSQYPGAKYIIRDTGERIDLRFHPKASDLHLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVMFLPTWDGKLPIPSIIKPKPFWTGKQLFTLIIPGNVNCQNFHATHPGSSENNGPYSWISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENGHLENGLFYGNIQTVINDWLLLEGHSIGIGDTIADPQTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGLAGEYVEFQNLKTIKLSDAVFKKKFKFDPTNERYARKLFTDEVLRDMVGSSEAVAEIEKEWEQLNDDRKSLRQIYPTGESKVVLPCNLERMIWNAQKIFHINKRHQTDLNPLKVIKGVRDLLKKCVIVRGEDKLSQQANDNATTLFQCLVRSTLCTKLVAETHRLTEEAFEWLLGEIESKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGTAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDQTRISPWLLRVELDRKRMTDKKLTMEHISERINAGFGDDLNCIFNDDNAEKLVLRIRIMNADDGKSED-DEQTDKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMHWPSTDEKKRIVITELGEFKAIAEWLLETDGTALMRVLSERDVDPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLLLDAEKCKYGIEIPMNVGGGGIMGGGGMFFGSAASPSAAMTPGMTPWAEGATPAYVWSPTG--SGMTPGGPGFSPSGQSDASGLSPGYSPAWSPQPGSPGSPAMSPY-----------------FPSPAHGGLSPSYSPSSPTYAPTSPGLASPTSPGYSPTSPQYSPTSPGYSPTSPNYSPTSPSYSPTS--------------PSYSPTSPSYSPT------------------------------------------SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY---------SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPKSPGQSPVSPSYSPSSPKYSPTSPNYSPASPNYSPTSPNYSPTSPKY 1422
MQ+LVRRGNSQYPGAKYI+RD GERIDLRFHPK SDLHLQCGYKVERH+ D DLV+FNRQP+LHKMSMMGH+VKVLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAEV NIH+TPRQII PQANKP MGIVQDTLTAVRKMTKRDVF+ +EQMMNL+MFLPTWDGK+P P I+KP+P WTGKQLF+LIIPGNVN H+THP E++GPY WISPGDT+V++E+G+LIMGILCKKTLG SAGSLLH+ LE GH G FYGNIQTVIN+WLLLEGHSIGIGDTIADPQTY +I IKKAKD+VI VI KAH+ ELE TPGNTLRQTFENQVNRILNDARDKTGGSAK+SLTE+NN K MVV+GSKGS+IN+SQVIACVGQQNVEGKRIP+GFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRN+VGQ+IQ RYGEDGLAGE VEFQNL T+KLS+ F+K+FKFD +NERY RK+FTD+V++++ S A+ E+E EW+QL DR++LR+I+P G+SKVVLPCNL+RMIWN QKIFHINKR TDL+PL+VI GVRDLL++CVIV G D LS+QAN+NAT LFQCLVRSTLCTK VAE RL+ EAFEWL+GEIE++F AQA PGEMVGA+AAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTG AARDAEKAKNVLCRLEHTTL+KVTANTAIYYDPDPQ TVI+EDQEFVNVYYEMPDFD TRISPWLLR+ELDRKRMTDKKLTME I+E+INAGFGDDLNCIFNDDNA+KLVLRIRIMN ++ K +D DE DKMEDDMFLRCIEANMLSDMTLQG+EAI KVYMH P TD KKRI+ITE GEFKAI EWLLETDGT++M+VLSERDVDPVRTSSNDICEIF VLGIEAVRKSVEKE+N V FYG+YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAA+HAE DPMRGVSENIIMGQLPRMGT FDLLLDAEKC+YGIEIP + G ++GG MFFG+ A+PS MTP MTPW + TP Y +SP+G SGMTPGGP FSPS SDASG+SP +SPA S P+MSPY + + + G SP+YSP+SP Y+PTSP L TSP YS T+P ++P S GYSP++ YSPTSP YSPTS YSP S +YSPT SP+Y+P +PSYSPTSP+YS SP YSP SP+YS T YSPTSP+Y SP SP Y+P SP YSP SP YSPTSP YSP+SP +SPA+ YSPT SYS TSP YSP YSP+S YSP SP +P + +YSP+SP YSPT+P S YSPTSP YSP+SP +
Sbjct: 393 MQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQMMNLLMFLPTWDGKVPQPCILKPRPLWTGKQLFSLIIPGNVNMIRTHSTHP-DDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHEIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTVKLSNKAFEKRFKFDWSNERYMRKVFTDDVIKELSESGNALPELEIEWDQLCRDREALREIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRMPTDLSPLRVINGVRDLLQRCVIVVGNDHLSKQANENATLLFQCLVRSTLCTKYVAEEFRLSAEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNNEETKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITETGEFKAIGEWLLETDGTSMMKVLSERDVDPVRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCRYGIEIPSTL-GASMIGGSAMFFGAGATPS--MTPPMTPWVQCGTPRY-FSPSGQMSGMTPGGPSFSPSAASDASGMSPSWSPAHPGSSPSSPGPSMSPYLPPSPSVSPSYSPTSPNYTASSPGAASPNYSPTSPNYSPTSP-LYPATSPRYS-TTPNFAPQSTGYSPSTSGYSPTSPVYSPTSNYQSSSPSFSGSGTNMYSPGS-AYSPTSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPSSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPAN-QYSPTGSSYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPTAP-----SQGYSPTSPAYSPSSPTF 1884 HSP 2 Score: 216.853 bits (551), Expect = 8.082e-53 Identity = 178/400 (44.50%), Postives = 223/400 (55.75%), Query Frame = 0
Query: 1198 APTSPGLASPTSPGYSPTSPQY-SPTSP--GYSPTSPNYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSP------------------------------------------KSPGQSPVSPSYSPSSPKYSPTSPNYSPASPNYSPTS----------------PNYSPTSPKYSPTSPTYSPASPKYSPSSPKYSPSSPQ------YSPSSPQYSNTSPQYSPSSPQYSPTSPTYSPTSPNYSPTSPQYSPASPTYSPTAGSS-YSPTSPTYSPASPSYDTEEDDD 1528
A +P + P +P +P+Y SP+ G +P P++SP++ S S SPS+SP P SP+SP S + S S S + S + T+ S SP+YSPTSP+YSPTSP Y TSP YS T+P+++P S YSP++ YSP SP YSPTS S + + YSP S +YSP SP +PV+PSYSP+SP YS SP+YSPASP YS T + SP SP+Y+P SP YSPASPKYSP+SP YSPSSPQ YSP+ YS TSP+YSP+ YSP+S YSPTSP Y+PT+ YSP SP YSPTA S YSPTSP YSP+SP++ EE DD
Sbjct: 1495 AGATPSMTPPMTPWVQCGTPRYFSPSGQMSGMTPGGPSFSPSAASDASGMSPSWSPAHPGSSPSSPGPSMSPYLPPSPSVSPSYSPTSPNYTASSPGAASPNYSPTSPNYSPTSPLYPATSPRYS-TTPNFAPQSTGYSPSTSGYSPTSPVYSPTSNYQSSSPSFSGSGTNMYSPGS-AYSPTSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPSSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPANQYSPTGSSYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPTAPSQGYSPTSPAYSPSSPTF--EESDD 1889
BLAST of rna polymerase ii largest partial vs. nr
Match: gi|827555532|ref|XP_012549218.1| (LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1 [Bombyx mori]) HSP 1 Score: 2202.94 bits (5707), Expect = 0.000e+0 Identity = 1120/1523 (73.54%), Postives = 1236/1523 (81.16%), Query Frame = 0
Query: 1 MQDLVRRGNSQYPGAKYIIRDTGERIDLRFHPKASDLHLQCGYKVERHIHDGDLVVFNRQPSLHKMSMMGHKVKVLPWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEVLNIHLTPRQIIAPQANKPCMGIVQDTLTAVRKMTKRDVFLDKEQMMNLVMFLPTWDGKLPIPSIIKPKPFWTGKQLFTLIIPGNVNCQNFHATHPGSSENNGPYSWISPGDTRVLIENGQLIMGILCKKTLGASAGSLLHVSQLENGHLENGLFYGNIQTVINDWLLLEGHSIGIGDTIADPQTYADIISTIKKAKDEVIEVIHKAHSDELEATPGNTLRQTFENQVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNAVGQVIQFRYGEDGLAGEYVEFQNLKTIKLSDAVFKKKFKFDPTNERYARKLFTDEVLRDMVGSSEAVAEIEKEWEQLNDDRKSLRQIYPTGESKVVLPCNLERMIWNAQKIFHINKRHQTDLNPLKVIKGVRDLLKKCVIVRGEDKLSQQANDNATTLFQCLVRSTLCTKLVAETHRLTEEAFEWLLGEIESKFNYAQATPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGTAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDQTRISPWLLRVELDRKRMTDKKLTMEHISERINAGFGDDLNCIFNDDNAEKLVLRIRIMNADDGKSED-DEQT-DKMEDDMFLRCIEANMLSDMTLQGLEAISKVYMHWPSTDEKKRIVITELGEFKAIAEWLLETDGTALMRVLSERDVDPVRTSSNDICEIFSVLGIEAVRKSVEKEINTVFSFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTAAFDLLLDAEKCKYGIEIPMNVGGGGIMGGG-GMFFGSAASPSAAMTPGMTPWAEGATPAY---VWSP--TGSGMTPGGPGFSPSGQSDASGLSPGYSPAW-SPQPGSPGSPAMSPYFPSPAHGGLSPSYSPSSPTYAPTSPGLASPTSPGYSPTSPQYSPTSPGYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--------------------PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY------------SPTSPS-YSPTSPSYSPT-----------------------------------SPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPKSPGQSPVSP-SYSPSSPKYSPTSPNYSPASPNYSPTSPNYSPTSPKYSPTS--PTYSPASPKYSPSSPKY 1443
MQ+LVRRGN+QYPGAKYI+R+ GERIDLRFHPK+SDLHL GYKVERH+ D DLV+FNRQP+LHKMSMMGH+VKVLPWSTFRMNLS TSPYNADFDGDEMNLHVPQSMETRAEV NIH+TPRQII PQANKP MGIVQDTLTAVRKMTKRDVFL KEQ+MNL+MFLPTWDGK+P P I+KP+P WTGKQ+FTLIIPG VN H+THP E++GPY WISPGDT+V++E+G+L+MGILCKK+LGASAGSLLH+ LE GH G FYGNIQTVIN+WLLLEGHSI IGDTIADPQTY +I I KAKD+VIEVI KAH+ ELE TPGNTLRQTFENQVNRILNDARDKTGGSAK+SLTE+NN K MVVAGSKGS+IN+SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV+YDGTVRN+VGQ+IQ RYGEDGLAGE VEFQNL T+KLS+ F+KKFKFD +NERY +++F+++++R++ S +A++E EWEQL+ DR++LRQI+PTGESKVVLPCN +RMIWNAQK FHINKR TDL+P+KVIKGV DLLKKCV+V G+D+LS+QAN+NAT LFQCLVRSTLCTK V+E HRL+ AFEWL+GEIE++F AQ PGEMVGA+AAQS+GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTG AARDAEKAKNVLCRLEHTTL+KVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFD +ISPWLLR+ELDRKRMTDKKLTME I+E+INAGFGDDLNCIFNDDNAEKLVLRIRIMN ++ K +D DE+T D MEDDMFLRCIEANMLSDMTLQG+EAI+KVYMH P T+ KKRI ITE GEFKAIAEWLLETDGT+LM+VLSERDVDP+RT SNDICEIF VLGIEAVRKSVEKE+N V FYG+YVNYRHLALLCDVMTAKG+LMAITRHGINRQDTGALMRCSFEETVDVL+DAASHAEVDPMRGVSENIIMGQLPRMGT FDLLLD EKCK + GG+ G GM+FG +PS M+P MTPW+ TP Y VWSP GS MTPGGP FSPS SDASGLSP YS AW + SPA G SPSYSPS+P YAP SP + +PTSP YSP SP YSPTSPNYSPTSP YSPTSPSYSPTSP YSPTSP YSP SP YSP+SP+YSP SP+YS TS SYSPTSP YS TSP YSP+SP YSP SP Y + TS S YSPTSP+YSPT SP+YSP S YSPTSP YSPTSP YS TS S S S S S +YS SSP+ SP S YSP SP ++PTSPNYSP+SP YS T TYSP SP YS +SP Y
Sbjct: 392 MQELVRRGNAQYPGAKYIVRENGERIDLRFHPKSSDLHLLYGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGPVNMIRTHSTHP-DEEDDGPYKWISPGDTKVVVEHGELLMGILCKKSLGASAGSLLHICMLELGHETAGRFYGNIQTVINNWLLLEGHSIAIGDTIADPQTYQEIQRAIVKAKDDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTVKLSNKAFEKKFKFDSSNERYLKRIFSEDIVRELTESGSVIADLESEWEQLSKDRETLRQIFPTGESKVVLPCNFKRMIWNAQKTFHINKRIPTDLSPIKVIKGVSDLLKKCVLVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSSVAFEWLIGEIEARFQQAQVNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPAKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQDHDEETVDXMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAKKRITITEQGEFKAIAEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGYLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDGEKCKEAM--------GGLGGAEVGMYFG-VGTPS--MSPLMTPWSTQNTPGYGSSVWSPCQVGSSMTPGGPSFSPSNASDASGLSPAYSNAWSPQPGSPGSPGPPLSPYSSPA--GASPSYSPSNPVYAPASPSI--------TPTSPHYSPASPSYSPTSPNYSPTSPIYSPTSPSYSPTSPGYSPTSPLYSPASPRYSPSSPNYSPASPAYSTTSNFPTTSPNYSPSSPSYSPTSLSYSPTSPGYS-TSPGYSPSSPRYSPNSPVYSPTSSNYSPSSPNYTSGSVYSPTSPTYSPTSRSYSPSSPSYSQSSPNYSPSSPNYSPTSPSVAGGSPTYSPTSQQYSPTSPQYSPTSPGYSSTSQHPSSTRYSPSSPSSPNYSPSSHNYSRSSPRNSPGSSKYSPTSPTFTPTSPNYSPSSPAYSSTGGPSTYSPTSPTYSSTSPNY 1891 HSP 2 Score: 228.794 bits (582), Expect = 1.361e-56 Identity = 200/413 (48.43%), Postives = 234/413 (56.66%), Query Frame = 0
Query: 1203 GLASPT-SPGYSPTSPQYSPTSPGYSPTSPNYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP---TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPASPSYSPKS-------------PGQSPVSPSYSPSSPKYSPTSPNYSPASPNYSPTSPNY--------------------SPTSPKYSPT-----------------------------------SPTYSPASPKYSPSSPKYSPSSPQY------------SPSSPQYSNTSP---QYSPSSPQYSPTSPTYSPTSPNYSPTSPQYSPASPTYSPTAG-SSYSPTSPTYSPASPSYDTEED 1526
G+ +P+ SP +P S Q +PGY + + S +P PS+SP++ S S SP+YS + S P YS SPSYSP++P Y+P SPS +PTSP YSP SPSYSPTSP+YSPTSP YSPTSPSYSP SP YSPTSP YSP SP YSP+SP+YSPASP+YS S P SP S SYSP+SP YS TSP YSP+SP YSP SP Y SPTSP YSPT SPTYSP S +YSP+SP+YSP+SP Y SPSSP N SP YS SSP+ SP S YSPTSP ++PTSP YSP+SP YS T G S+YSPTSPTYS SP+YD +D
Sbjct: 1488 GVGTPSMSPLMTPWSTQ---NTPGYGSSVWSPCQVGSSMTPGGPSFSPSNASDASGLSPAYSNAWSPQPGSPGSPGPPLSPYSSPAGASPSYSPSNPVYAPASPSITPTSPHYSPASPSYSPTSPNYSPTSPIYSPTSPSYSPTSPGYSPTSPLYSPASPRYSPSSPNYSPASPAYSTTSNFPTTSPNYSPSSPSYSPTSLSYSPTSPGYS-TSPGYSPSSPRYSPNSPVYSPTSSNYSPSSPNYTSGSVYSPTSPTYSPTSRSYSPSSPSYSQSSPNYSPSSPNYSPTSPSVAGGSPTYSPTSQQYSPTSPQYSPTSPGYSSTSQHPSSTRYSPSSPSSPNYSPSSHNYSRSSPRNSPGSSKYSPTSPTFTPTSPNYSPSSPAYSSTGGPSTYSPTSPTYSSTSPNYDDGDD 1896 The following BLAST results are available for this feature:
BLAST of rna polymerase ii largest partial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 4
BLAST of rna polymerase ii largest partial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of rna polymerase ii largest partial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold742_size103727:22880..27487+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold742_size103727-processed-gene-0.1 ID=snap_masked-scaffold742_size103727-processed-gene-0.1|Name=rna polymerase ii largest partial|organism=Tigriopus kingsejongensis|type=gene|length=4608bp|location=Sequence derived from alignment at scaffold742_size103727:22880..27487+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'rna polymerase ii largest partial' has the following synonyms
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