tonb-dependent receptor plug, maker-scaffold139_size317827-snap-gene-2.25 (gene) Tigriopus kingsejongensis

Overview
Nametonb-dependent receptor plug
Unique Namemaker-scaffold139_size317827-snap-gene-2.25
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of tonb-dependent receptor plug vs. L. salmonis genes
Match: EMLSAG00000004748 (supercontig:LSalAtl2s:LSalAtl2s24:993307:1011904:-1 gene:EMLSAG00000004748 transcript:EMLSAT00000004748 description:"maker-LSalAtl2s24-augustus-gene-10.16")

HSP 1 Score: 80.8777 bits (198), Expect = 8.252e-17
Identity = 61/199 (30.65%), Postives = 98/199 (49.25%), Query Frame = 0
Query:   16 GANDVLVVAQEKG-DLLSTSMSLFVSKYANS----SESGGRTVAMEVNDRKIGLKMTLNSRGIAAFARDEDKFRFRSREWKAVSIKPGINDGLYKVPSSGFEIKFSVFFIDMTKPLILVDLDASRPVDWEREYVAPFTGLEQDLDHIVKLCHKLSEDGQKEIVYLTDQIIVWDNSVRDDLFLKYQNRNGFSLPKGPVIL 209
            G NDV++V Q  G  L ST   + V K++N         G+ V + VN+ K    M +   G A F RD D  R+ S EW  V IK GIN G + +P+   +I F ++  +    L++ D+D +      + +V    G       ++ L   + + G  +I+YLT + I  D+  R+ LF K   ++G  LP GP+++
Sbjct:   39 GGNDVILVRQSDGITLKSTPFQIQVGKFSNFFSFWQTREGKEVEIYVNEVKGPRSMFITDSGTACF-RDNDDERWASEEWSQVPIKNGINYGRFHIPALSIDIYFKIYLHNQDDRLVIADVDGTITESDVKGHVYSVLGSSAHHHDVIPLFQSIYKRGY-QIIYLTARSIAQDDETRNYLF-KTLKKDG--LPIGPLLM 232          
BLAST of tonb-dependent receptor plug vs. L. salmonis genes
Match: EMLSAG00000000700 (supercontig:LSalAtl2s:LSalAtl2s110:607831:610214:1 gene:EMLSAG00000000700 transcript:EMLSAT00000000700 description:"maker-LSalAtl2s110-augustus-gene-6.13")

HSP 1 Score: 57.7658 bits (138), Expect = 1.087e-9
Identity = 49/185 (26.49%), Postives = 84/185 (45.41%), Query Frame = 0
Query:   16 GANDVLVVAQEKGDLLSTSMSL----FVSKYANSSESGGRTVAMEVNDRKIGLKMTLNSRGIAAFARDEDKFR--FRSREWKAVSIKPGINDGLYKVPSSGFEIKFSVFFIDMTKPLILVDLDAS-RPVDWEREYVAPFTGLEQDLDH--IVKLCHKLSEDGQKEIVYLTDQIIVWDNSVRDDLF 191
            GA+DV+ V Q  G + ST   L    F S ++      G +V + +N ++  + + ++  G   F R        +   EW  V +  G N+  Y++PS   EI F V+       L++ D+D +    D E +    F+ L + + +  ++ L   +   G K I+YLT + I  D + R  LF
Sbjct:   36 GASDVVAVRQNDGSIHSTPFHLQIGRFSSFFSYWFRRPGLSVQIVINGKRGPMDLKVSEMGATCFERSSPDHSETWTPSEWDQVELSSGENNASYRIPSLRIEISFQVYLYKQEDKLVISDVDGTITESDLEGQI---FSQLGRSVHYFDVIPLFKAIRMRGYK-IIYLTARSIAQDETTRYYLF 216          
BLAST of tonb-dependent receptor plug vs. nr
Match: gi|1325311845|ref|XP_023337550.1| (nuclear elongation and deformation protein 1-like isoform X1 [Eurytemora affinis])

HSP 1 Score: 76.2554 bits (186), Expect = 1.735e-12
Identity = 53/182 (29.12%), Postives = 89/182 (48.90%), Query Frame = 0
Query:   16 GANDVLVVAQEKGDLLSTSMSLFVSKYANSSESG-GRTVAMEVNDRKIGLKMTLNSRGIAAFARDEDKFRFRSREWKAVSIKPGINDGLYKVPSSGFEIKFSVFFIDMTKPLILVDLDASRPVDWEREYVAPFTGLEQDLDHIVKLCHKLSEDGQKEIVYLTDQIIVWDNSVRDDLFLKYQN 196
            GAND++VV +  G  +ST   +   K  +   S  G+ V + VN+     +M +   G AAF    DK+   S   + +++KPG+N G +  P  G  I F+VF  +    ++  D+D +      + +V P  GL  +   +V+L  ++ E G   ++YLT + I  D   ++ LF   QN
Sbjct:   39 GANDIIVVHRSDGGFVSTRWDVKFGKLHSLLISREGKEVYIFVNNVPARQRMEIQDSGYAAFKGSSDKY-MTSHHLEELNLKPGLNKGKFVAPQLGVVIPFNVFLYEENDKIVFTDIDGTITQSDIKGHVMPHFGLTAEHPAVVELFSRIKEQGY-HVIYLTSRSISQDAETKEYLFEMLQN 218          
BLAST of tonb-dependent receptor plug vs. nr
Match: gi|1325311847|ref|XP_023337551.1| (nuclear elongation and deformation protein 1-like isoform X2 [Eurytemora affinis])

HSP 1 Score: 67.781 bits (164), Expect = 1.293e-9
Identity = 49/181 (27.07%), Postives = 87/181 (48.07%), Query Frame = 0
Query:   16 GANDVLVVAQEKGDLLSTSMSLFVSKYANSSESGGRTVAMEVNDRKIGLKMTLNSRGIAAFARDEDKFRFRSREWKAVSIKPGINDGLYKVPSSGFEIKFSVFFIDMTKPLILVDLDASRPVDWEREYVAPFTGLEQDLDHIVKLCHKLSEDGQKEIVYLTDQIIVWDNSVRDDLFLKYQN 196
            GAND++VV +  G  +ST   +   K+       G+  ++ ++      +M +   G AAF    DK+   S   + +++KPG+N G +  P  G  I F+VF  +    ++  D+D +      + +V P  GL  +   +V+L  ++ E G   ++YLT + I  D   ++ LF   QN
Sbjct:   39 GANDIIVVHRSDGGFVSTRWDV---KF-------GKLHSLLIS------RMEIQDSGYAAFKGSSDKY-MTSHHLEELNLKPGLNKGKFVAPQLGVVIPFNVFLYEENDKIVFTDIDGTITQSDIKGHVMPHFGLTAEHPAVVELFSRIKEQGY-HVIYLTSRSISQDAETKEYLFEMLQN 201          
The following BLAST results are available for this feature:
BLAST of tonb-dependent receptor plug vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAG000000047488.252e-1730.65supercontig:LSalAtl2s:LSalAtl2s24:993307:1011904:-... [more]
EMLSAG000000007001.087e-926.49supercontig:LSalAtl2s:LSalAtl2s110:607831:610214:1... [more]
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BLAST of tonb-dependent receptor plug vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of tonb-dependent receptor plug vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 2
Match NameE-valueIdentityDescription
gi|1325311845|ref|XP_023337550.1|1.735e-1229.12nuclear elongation and deformation protein 1-like ... [more]
gi|1325311847|ref|XP_023337551.1|1.293e-927.07nuclear elongation and deformation protein 1-like ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold139_size317827supercontigscaffold139_size317827:266002..267338 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold139_size317827-snap-gene-2.25-mRNA-1maker-scaffold139_size317827-snap-gene-2.25-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold139_size317827:266002..267338+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold139_size317827-snap-gene-2.25 ID=maker-scaffold139_size317827-snap-gene-2.25|Name=tonb-dependent receptor plug|organism=Tigriopus kingsejongensis|type=gene|length=1337bp|location=Sequence derived from alignment at scaffold139_size317827:266002..267338+ (Tigriopus kingsejongensis)
ATGGGATGTGGAGCCAGTCAAGTCGAGCATATTGATGACAGCCTGGGTAG GATATGACCCAGTGGCAGTCCAAACACATTGTATCTCAACACTGAGCTCT CTTTCAGGGGCCAATGATGTGCTCGTGGTGGCTCAGGAAAAGGGGGATCT GCTGTCCACATCCATGTCCCTGTTTGTGAGTAAATATGCCAACTCGAGCG AGTCGGGGGGTCGAACCGTGGCCATGGAAGTCAACGACAGGAAGATTGGT CTCAAAATGACTTTGAACAGCCGGGGCATTGCCGCATTTGCTCGGGACGA GGATAAATTCCGGTTCAGGAGTCGGGAATGGAAGGCTGTCTCGATCAAGC CGGGGATCAACGATGGACTGTACAAAGTTCCCAGTTCGGGGTTCGAGATC AAGTTTTCCGTATTTTTCATTGATATGACCAAGCCCTTGATTTTGGTGGA TTTGGACGCCTCGAGACCCGTGGATTGGGAGAGGGAGTATGTTGCACCCT TCACTGGATTGGAACAAGACTTGGACCACATTGTGAAGCTCTGCCATAAA TTGAGCGAGGATGGCCAAAAGGAAATTGTGTACCTCACTGATCAGATCAT CGTTTGGGACAATTCCGTGCGCGACGACCTGTTCTTGGTGAGTCAATTCT TGGTGGCCGTTCATGTAATGGCAAACACAAACTCCATGGATTATTTTTAG AAATATCAAAACAGGAACGGCTTTTCGTTGCCCAAAGGCCCTGTAATTCT GAGACAAGAGGGTCTGCCCAAGCAGTTTGGAGCTAAACCTCGAGTGGCCA ACGTTTACAAGACAAAGTTCGTCAAAGAGCTTTTGGATCTCAATGCGACC ATCGAGGCCGTCTATGGAACAAATGAAGGGGATCGCATCGTGTATGAGGG GGCAGACCTCGAGGCTGACATTCTCTTCTTTGGCCCTTCTGCCATGAGGG ACAAATGTCTCGAGCTCTTTGGCGACGGTAATAAGGACTAGGGAGTGTGT GTGGCACAGATTATTTCATGATGAATGATGCCACTACTCCTGCACATCCC CTAAAAAAACATATTTTTTTTAATGTTACGTGTTATATAAATCATTGGCT CTCGCTTTCCAGATCCCGAGCTGACCCCTGAGACCAAGGACGAAGACGAG CGACACGAGCCCGAGGGCGAGGAACACCCAATCGAGGAGGAGGCTGGAGG AGTGGCCGAAGACATAGATGAGAACGAGCCAAATATCGACGAAGAACATC TAGCCGAGACGGAGCTTATCAGTGCAGAACTGGACGCTGTAGACAATCCG ATTGACAACGCATGAGAGAAACCAAAACATGTACTGT
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Synonyms
The feature 'tonb-dependent receptor plug' has the following synonyms
Synonym
Tk05025
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