tonb-dependent receptor plug, maker-scaffold139_size317827-snap-gene-2.25 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of tonb-dependent receptor plug vs. L. salmonis genes
Match: EMLSAG00000004748 (supercontig:LSalAtl2s:LSalAtl2s24:993307:1011904:-1 gene:EMLSAG00000004748 transcript:EMLSAT00000004748 description:"maker-LSalAtl2s24-augustus-gene-10.16") HSP 1 Score: 80.8777 bits (198), Expect = 8.252e-17 Identity = 61/199 (30.65%), Postives = 98/199 (49.25%), Query Frame = 0 Query: 16 GANDVLVVAQEKG-DLLSTSMSLFVSKYANS----SESGGRTVAMEVNDRKIGLKMTLNSRGIAAFARDEDKFRFRSREWKAVSIKPGINDGLYKVPSSGFEIKFSVFFIDMTKPLILVDLDASRPVDWEREYVAPFTGLEQDLDHIVKLCHKLSEDGQKEIVYLTDQIIVWDNSVRDDLFLKYQNRNGFSLPKGPVIL 209 G NDV++V Q G L ST + V K++N G+ V + VN+ K M + G A F RD D R+ S EW V IK GIN G + +P+ +I F ++ + L++ D+D + + +V G ++ L + + G +I+YLT + I D+ R+ LF K ++G LP GP+++ Sbjct: 39 GGNDVILVRQSDGITLKSTPFQIQVGKFSNFFSFWQTREGKEVEIYVNEVKGPRSMFITDSGTACF-RDNDDERWASEEWSQVPIKNGINYGRFHIPALSIDIYFKIYLHNQDDRLVIADVDGTITESDVKGHVYSVLGSSAHHHDVIPLFQSIYKRGY-QIIYLTARSIAQDDETRNYLF-KTLKKDG--LPIGPLLM 232
BLAST of tonb-dependent receptor plug vs. L. salmonis genes
Match: EMLSAG00000000700 (supercontig:LSalAtl2s:LSalAtl2s110:607831:610214:1 gene:EMLSAG00000000700 transcript:EMLSAT00000000700 description:"maker-LSalAtl2s110-augustus-gene-6.13") HSP 1 Score: 57.7658 bits (138), Expect = 1.087e-9 Identity = 49/185 (26.49%), Postives = 84/185 (45.41%), Query Frame = 0 Query: 16 GANDVLVVAQEKGDLLSTSMSL----FVSKYANSSESGGRTVAMEVNDRKIGLKMTLNSRGIAAFARDEDKFR--FRSREWKAVSIKPGINDGLYKVPSSGFEIKFSVFFIDMTKPLILVDLDAS-RPVDWEREYVAPFTGLEQDLDH--IVKLCHKLSEDGQKEIVYLTDQIIVWDNSVRDDLF 191 GA+DV+ V Q G + ST L F S ++ G +V + +N ++ + + ++ G F R + EW V + G N+ Y++PS EI F V+ L++ D+D + D E + F+ L + + + ++ L + G K I+YLT + I D + R LF Sbjct: 36 GASDVVAVRQNDGSIHSTPFHLQIGRFSSFFSYWFRRPGLSVQIVINGKRGPMDLKVSEMGATCFERSSPDHSETWTPSEWDQVELSSGENNASYRIPSLRIEISFQVYLYKQEDKLVISDVDGTITESDLEGQI---FSQLGRSVHYFDVIPLFKAIRMRGYK-IIYLTARSIAQDETTRYYLF 216
BLAST of tonb-dependent receptor plug vs. nr
Match: gi|1325311845|ref|XP_023337550.1| (nuclear elongation and deformation protein 1-like isoform X1 [Eurytemora affinis]) HSP 1 Score: 76.2554 bits (186), Expect = 1.735e-12 Identity = 53/182 (29.12%), Postives = 89/182 (48.90%), Query Frame = 0 Query: 16 GANDVLVVAQEKGDLLSTSMSLFVSKYANSSESG-GRTVAMEVNDRKIGLKMTLNSRGIAAFARDEDKFRFRSREWKAVSIKPGINDGLYKVPSSGFEIKFSVFFIDMTKPLILVDLDASRPVDWEREYVAPFTGLEQDLDHIVKLCHKLSEDGQKEIVYLTDQIIVWDNSVRDDLFLKYQN 196 GAND++VV + G +ST + K + S G+ V + VN+ +M + G AAF DK+ S + +++KPG+N G + P G I F+VF + ++ D+D + + +V P GL + +V+L ++ E G ++YLT + I D ++ LF QN Sbjct: 39 GANDIIVVHRSDGGFVSTRWDVKFGKLHSLLISREGKEVYIFVNNVPARQRMEIQDSGYAAFKGSSDKY-MTSHHLEELNLKPGLNKGKFVAPQLGVVIPFNVFLYEENDKIVFTDIDGTITQSDIKGHVMPHFGLTAEHPAVVELFSRIKEQGY-HVIYLTSRSISQDAETKEYLFEMLQN 218
BLAST of tonb-dependent receptor plug vs. nr
Match: gi|1325311847|ref|XP_023337551.1| (nuclear elongation and deformation protein 1-like isoform X2 [Eurytemora affinis]) HSP 1 Score: 67.781 bits (164), Expect = 1.293e-9 Identity = 49/181 (27.07%), Postives = 87/181 (48.07%), Query Frame = 0 Query: 16 GANDVLVVAQEKGDLLSTSMSLFVSKYANSSESGGRTVAMEVNDRKIGLKMTLNSRGIAAFARDEDKFRFRSREWKAVSIKPGINDGLYKVPSSGFEIKFSVFFIDMTKPLILVDLDASRPVDWEREYVAPFTGLEQDLDHIVKLCHKLSEDGQKEIVYLTDQIIVWDNSVRDDLFLKYQN 196 GAND++VV + G +ST + K+ G+ ++ ++ +M + G AAF DK+ S + +++KPG+N G + P G I F+VF + ++ D+D + + +V P GL + +V+L ++ E G ++YLT + I D ++ LF QN Sbjct: 39 GANDIIVVHRSDGGFVSTRWDV---KF-------GKLHSLLIS------RMEIQDSGYAAFKGSSDKY-MTSHHLEELNLKPGLNKGKFVAPQLGVVIPFNVFLYEENDKIVFTDIDGTITQSDIKGHVMPHFGLTAEHPAVVELFSRIKEQGY-HVIYLTSRSISQDAETKEYLFEMLQN 201 The following BLAST results are available for this feature:
BLAST of tonb-dependent receptor plug vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 2
BLAST of tonb-dependent receptor plug vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of tonb-dependent receptor plug vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 2
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold139_size317827:266002..267338+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold139_size317827-snap-gene-2.25 ID=maker-scaffold139_size317827-snap-gene-2.25|Name=tonb-dependent receptor plug|organism=Tigriopus kingsejongensis|type=gene|length=1337bp|location=Sequence derived from alignment at scaffold139_size317827:266002..267338+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'tonb-dependent receptor plug' has the following synonyms
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