ph-sensitive chloride channel isoform x5, maker-scaffold145_size311916-snap-gene-2.18 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of ph-sensitive chloride channel isoform x5 vs. L. salmonis genes
Match: EMLSAG00000000484 (supercontig:LSalAtl2s:LSalAtl2s1075:106490:119819:1 gene:EMLSAG00000000484 transcript:EMLSAT00000000484 description:"maker-LSalAtl2s1075-snap-gene-0.34") HSP 1 Score: 72.7886 bits (177), Expect = 3.928e-15 Identity = 59/190 (31.05%), Postives = 91/190 (47.89%), Query Frame = 0 Query: 35 YHDLSDREILDHLVHRQRYDRREVP-PSVGPLIINASLALISLHLEESADIQPKMTFSLEFGQSWFDPRLIHVG----------------NQRYP----YLNGINHYDDLWTPDLYFHNLKTEPQMVPNGSNQALRVLVNGSV-WLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRWS 202 + + +++EILDHL+ R YD+RE P S G LI+NAS+ ++S+ + A + SW D RL+H N++ P +LNGI H ++W P + ++ S+ ALR+ NG+V WL R G L CR S +PFD+ C ++ + E D+ WS Sbjct: 1 FREAAEKEILDHLLQRSHYDKREKPQASEGILIVNASVIILSIEGSKDATLTNGRDVEYLLSLSWKDLRLMHATFEDSKPTSSSLSSPSYNKKDPLARLHLNGIYHSKEIWAPGI---------RLDEGDSSIALRIYGNGTVHWLIRRKKG-LNCRGQASL-YPFDEPVCSSTIETSTRE-DDLSLVWS 178
BLAST of ph-sensitive chloride channel isoform x5 vs. L. salmonis genes
Match: EMLSAG00000004091 (supercontig:LSalAtl2s:LSalAtl2s217:408116:410199:1 gene:EMLSAG00000004091 transcript:EMLSAT00000004091 description:"maker-LSalAtl2s217-augustus-gene-4.34") HSP 1 Score: 61.6178 bits (148), Expect = 2.720e-11 Identity = 53/180 (29.44%), Postives = 76/180 (42.22%), Query Frame = 0 Query: 42 EILDHLVHRQRYDRREVPPSVGP---LIINASLALISLHLEESADIQPKMTFSLEFGQSWFDPRL------IHVGNQRYPYLNGINHYDDLWTPDLYFHNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRWSQPGRFDHDSL 212 E LDHL+ YD+R P GP ++IN S+ L + + + + F QSW D RL + V + +L I W PD + N K N+ +RV G V S RL C + KFPFD C L+ S H KD++++W +P + L Sbjct: 70 ETLDHLLVYSFYDKRIRPKLGGPPVKVVINLSI----LSMGPVDEARNAFSMDCYFRQSWVDERLKYNTSGVEVLALNWAFLAKI------WVPDTFIINGKKSFLHKITVPNRFVRVSPTGKVSYSQRLTILANC-IMNLKKFPFDTQICPLKLGSFGHSNKDLIYQWKKPKAVSFNKL 238
BLAST of ph-sensitive chloride channel isoform x5 vs. L. salmonis genes
Match: EMLSAG00000002942 (supercontig:LSalAtl2s:LSalAtl2s168:571962:593342:-1 gene:EMLSAG00000002942 transcript:EMLSAT00000002942 description:"maker-LSalAtl2s168-augustus-gene-6.6") HSP 1 Score: 60.8474 bits (146), Expect = 5.650e-11 Identity = 48/150 (32.00%), Postives = 67/150 (44.67%), Query Frame = 0 Query: 42 EILDHLVHRQRYDRREVPPS-VGPLIINASLALISLHLEESADIQP-KMTFSLEFGQSWFDPRLIHVGNQRYPYLNGINHYDDLWTPDLYFHNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKS 189 +ILD L+ Q YDRR P + +G A+ I L++ I P M L Q WFD RL H G LN N LW P++YF N K N +R+ G++ +RL C + +KFP D+ C ++ S Sbjct: 10 DILDSLL--QNYDRRATPTNHIG----KATEVAIKLYVRSLGSINPDTMVIDLYLRQHWFDSRLNHPGLLEPMDLNDPNLVKALWKPEVYFPNAKDAEFQYVTVPNVLVRIDPGGAILYMLRLKLKFSCM-MELSKFPLDEQYCTMEIAS 152
BLAST of ph-sensitive chloride channel isoform x5 vs. L. salmonis genes
Match: EMLSAG00000004092 (supercontig:LSalAtl2s:LSalAtl2s217:422807:437258:1 gene:EMLSAG00000004092 transcript:EMLSAT00000004092 description:"augustus_masked-LSalAtl2s217-processed-gene-4.1") HSP 1 Score: 58.5362 bits (140), Expect = 2.714e-10 Identity = 47/174 (27.01%), Postives = 78/174 (44.83%), Query Frame = 0 Query: 34 RYHDLSDR--EILDHLVHRQRYDRREVPPSVG--PLIINASLALISLH-LEESADIQPKMTFSLEFGQSWFDPRLIHVGNQRYPYLNGINHYDDLWTPDLYFHNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRWS 202 R +LS R LD L+ RYDR ++ P +G P+ ++ + A+ S+ ++E + F Q W DPRL++ ++ +W PD + N K N+ +R+ +G + S RL C D KFP D C L+ S H + ++L+ W+ Sbjct: 68 RQDELSSRVSRTLDALLSENRYDR-QIRPQIGDSPIKVSVNFAIRSMGPVDEQKQL---FLMDCYFRQYWTDPRLVYNSSKLNELPMNWQXLTKIWRPDTFIINGKNSYLHKMTVPNRFIRISPDGRISYSQRLTVKARC-EMDLRKFPLDSQHCPLEIGSFGHGVDEILYNWT 236
BLAST of ph-sensitive chloride channel isoform x5 vs. L. salmonis genes
Match: EMLSAG00000011971 (supercontig:LSalAtl2s:LSalAtl2s84:948400:1079594:1 gene:EMLSAG00000011971 transcript:EMLSAT00000011971 description:"maker-LSalAtl2s84-augustus-gene-10.5") HSP 1 Score: 56.6102 bits (135), Expect = 1.411e-9 Identity = 45/172 (26.16%), Postives = 79/172 (45.93%), Query Frame = 0 Query: 40 DREILDHLVHRQRYDRREVPP----SVGPLIINASLALISLHLEESADIQPKMTFSLEFGQSWFDPRLIHV----GNQRYPYLNGINHYDDLWTPDLYFHNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRWSQ 203 ++++LD ++ YD+R P + GP IN ++ L ++ D++ + + + F + W D RL + G+ +Y L +W PD +F N K + N +R+ NG + S+R+ L C D +P DK CVLQ S D+++ W + Sbjct: 12 EKQVLDSILGTG-YDKRIRPSGKNDTDGPATINVNIYLRTI--SRIDDVKMEYSVQVTFREQWNDERLRYYDDTHGHLKYLTLTDPTK---VWMPDTFFRNEKEARKHEIIVPNVYVRIFPNGEILYSIRISLTLAC-PMDLRLYPLDKQVCVLQIASYGWAKDDLIYLWKE 176
BLAST of ph-sensitive chloride channel isoform x5 vs. L. salmonis genes
Match: EMLSAG00000003120 (supercontig:LSalAtl2s:LSalAtl2s1753:14457:18648:1 gene:EMLSAG00000003120 transcript:EMLSAT00000003120 description:"maker-LSalAtl2s1753-augustus-gene-0.11") HSP 1 Score: 49.2914 bits (116), Expect = 4.285e-7 Identity = 34/109 (31.19%), Postives = 46/109 (42.20%), Query Frame = 0 Query: 94 FGQSWFDPRLIHVGNQRYPYLN-GINHYDDLWTPDLYFHNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRW 201 F Q+W D RL L + +W PD YF N K N+ LR+ +G V S RL + C + KFPFD +C L S + +VL+ W Sbjct: 535 FRQAWVDQRLSFNATSSVTELPLNWQILNKIWKPDTYFINGKKSKMHKITVPNRFLRISPDGLVSFSQRLTIHAQCL-MELKKFPFDSQECPLHIGSYGYTADEVLYDW 642
BLAST of ph-sensitive chloride channel isoform x5 vs. SwissProt
Match: gi|44887891|sp|Q9BLY8.1|GBRB_DROSI (RecName: Full=Gamma-aminobutyric acid receptor subunit beta; AltName: Full=GABA(A) receptor; AltName: Full=Protein cyclodiene resistance; Flags: Precursor) HSP 1 Score: 68.1662 bits (165), Expect = 5.340e-12 Identity = 45/168 (26.79%), Postives = 79/168 (47.02%), Query Frame = 0 Query: 37 DLSDREILDHLVHRQRYDRREVPPSVGPLIINASLALISLHLEESADIQPKMTFSLEFGQSWFDPRLIHVGNQRYPYLN-GINHYDDLWTPDLYFHNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRWSQ 203 D++ ILD YD+R P GP + + + L + ++++ T F Q W DPRL + L+ G ++W PD +F N K + SN+ +RV +GS+ S+RL C + FP D+ C ++ +S + M+D+ ++W++ Sbjct: 56 DVNISAILDSF--SVSYDKRVRPNYGGPPV-EVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASC-PMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNE 219
BLAST of ph-sensitive chloride channel isoform x5 vs. SwissProt
Match: gi|635377460|sp|P25123.4|GBRB_DROME (RecName: Full=Gamma-aminobutyric acid receptor subunit beta; AltName: Full=GABA(A) receptor subunit beta; AltName: Full=Protein cyclodiene resistance; Flags: Precursor) HSP 1 Score: 68.1662 bits (165), Expect = 5.390e-12 Identity = 45/168 (26.79%), Postives = 79/168 (47.02%), Query Frame = 0 Query: 37 DLSDREILDHLVHRQRYDRREVPPSVGPLIINASLALISLHLEESADIQPKMTFSLEFGQSWFDPRLIHVGNQRYPYLN-GINHYDDLWTPDLYFHNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRWSQ 203 D++ ILD YD+R P GP + + + L + ++++ T F Q W DPRL + L+ G ++W PD +F N K + SN+ +RV +GS+ S+RL C + FP D+ C ++ +S + M+D+ ++W++ Sbjct: 56 DVNISAILDSF--SVSYDKRVRPNYGGPPV-EVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASC-PMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNE 219
BLAST of ph-sensitive chloride channel isoform x5 vs. SwissProt
Match: gi|74919269|sp|Q75NA5.2|GBRB_MUSDO (RecName: Full=Gamma-aminobutyric acid receptor subunit beta; AltName: Full=GABA(A) receptor subunit beta; AltName: Full=MdRdl; Flags: Precursor) HSP 1 Score: 67.3958 bits (163), Expect = 1.068e-11 Identity = 45/168 (26.79%), Postives = 79/168 (47.02%), Query Frame = 0 Query: 37 DLSDREILDHLVHRQRYDRREVPPSVGPLIINASLALISLHLEESADIQPKMTFSLEFGQSWFDPRLIHVGNQRYPYLN-GINHYDDLWTPDLYFHNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRWSQ 203 D++ ILD YD+R P GP + + + L + ++++ T F Q W DPRL + L+ G ++W PD +F N K + SN+ +RV +GS+ S+RL C + FP D+ C ++ +S + M+D+ ++W++ Sbjct: 54 DVNISAILDSF--SVSYDKRVRPNYGGPPV-EVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASC-PMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNE 217
BLAST of ph-sensitive chloride channel isoform x5 vs. SwissProt
Match: gi|57012755|sp|Q24352.1|GBRAL_DROME (RecName: Full=Gamma-aminobutyric acid receptor alpha-like; AltName: Full=GABA(A) receptor alpha-like and glycine receptor-like subunit of Drosophila; Short=GRD; Flags: Precursor) HSP 1 Score: 67.0106 bits (162), Expect = 1.256e-11 Identity = 60/198 (30.30%), Postives = 88/198 (44.44%), Query Frame = 0 Query: 42 EILDHLVHRQRYDRREVPPSVG--PLIINASLALISLHLEESADIQPKMTFSLE--FGQSWFDPRLIHVGNQRYPYLNGINHYDDLWTPDLYFHNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRWSQ---PGRFDHDSLKDLMDGVPSHLEQLNLGDCP 232 E+LD+L+ + YD + P G P I + + S+ D MT+S++ F QSW D RL G Q L+ ++ +W PD YF+N K N+ +R+ NG V S RL C + A FP D +C L+ S + DV++RW++ P D L Q +L DCP Sbjct: 111 ELLDNLL--RGYDN-SIRPDFGGPPATIEVDIMVRSMGPISEVD----MTYSMDCYFRQSWVDKRLAFEGAQDTLALS-VSMLARIWKPDTYFYNGKQSYLHTITTPNKFVRIYQNGRVLYSSRLTIKAGC-PMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWNKERPPVAIAED----------MKLSQFDLVDCP 289
BLAST of ph-sensitive chloride channel isoform x5 vs. SwissProt
Match: gi|116242495|sp|P23415.2|GLRA1_HUMAN (RecName: Full=Glycine receptor subunit alpha-1; AltName: Full=Glycine receptor 48 kDa subunit; AltName: Full=Glycine receptor strychnine-binding subunit; Flags: Precursor) HSP 1 Score: 66.2402 bits (160), Expect = 2.166e-11 Identity = 51/172 (29.65%), Postives = 77/172 (44.77%), Query Frame = 0 Query: 38 LSDREILDHLVHRQR-YDRREVPPSVGPLIINASLALISLHLEESADIQPKMTFSLEFGQSWFDPRLIHVGNQRYPYLN---GINHYDDLWTPDLYFHNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRWSQPG 205 +S + LD L+ R YD R P GP +N S + A+ ++ Q W DPRL + YP + + D +W PDL+F N K N+ LR+ NG+V S+R+ L C D FP D C++Q +S + M D+++ W + G Sbjct: 36 MSPSDFLDKLMGRTSGYDARIRPNFKGP-PVNVSCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAY---NEYPDDSLDLDPSMLDSIWKPDLFFANEKGAHFHEITTDNKLLRISRNGNVLYSIRITLTLAC-PMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQEQG 202
BLAST of ph-sensitive chloride channel isoform x5 vs. SwissProt
Match: gi|12644526|sp|P57695.1|GLRA1_BOVIN (RecName: Full=Glycine receptor subunit alpha-1; AltName: Full=Glycine receptor 48 kDa subunit; AltName: Full=Glycine receptor strychnine-binding subunit; Flags: Precursor) HSP 1 Score: 66.2402 bits (160), Expect = 2.313e-11 Identity = 51/172 (29.65%), Postives = 77/172 (44.77%), Query Frame = 0 Query: 38 LSDREILDHLVHRQR-YDRREVPPSVGPLIINASLALISLHLEESADIQPKMTFSLEFGQSWFDPRLIHVGNQRYPYLN---GINHYDDLWTPDLYFHNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRWSQPG 205 +S + LD L+ R YD R P GP +N S + A+ ++ Q W DPRL + YP + + D +W PDL+F N K N+ LR+ NG+V S+R+ L C D FP D C++Q +S + M D+++ W + G Sbjct: 36 MSPSDFLDKLMGRTSGYDARIRPNFKGP-PVNVSCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAY---NEYPDDSLDLDPSMLDSIWKPDLFFANEKGAHFHEITTDNKLLRISRNGNVLYSIRITLTLAC-PMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQEQG 202
BLAST of ph-sensitive chloride channel isoform x5 vs. SwissProt
Match: gi|12230887|sp|P07727.4|GLRA1_RAT (RecName: Full=Glycine receptor subunit alpha-1; AltName: Full=Glycine receptor 48 kDa subunit; AltName: Full=Glycine receptor strychnine-binding subunit; Flags: Precursor) HSP 1 Score: 65.855 bits (159), Expect = 2.869e-11 Identity = 51/172 (29.65%), Postives = 77/172 (44.77%), Query Frame = 0 Query: 38 LSDREILDHLVHRQR-YDRREVPPSVGPLIINASLALISLHLEESADIQPKMTFSLEFGQSWFDPRLIHVGNQRYPYLN---GINHYDDLWTPDLYFHNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRWSQPG 205 +S + LD L+ R YD R P GP +N S + A+ ++ Q W DPRL + YP + + D +W PDL+F N K N+ LR+ NG+V S+R+ L C D FP D C++Q +S + M D+++ W + G Sbjct: 36 MSPSDFLDKLMGRTSGYDARIRPNFKGP-PVNVSCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAY---NEYPDDSLDLDPSMLDSIWKPDLFFANEKGAHFHEITTDNKLLRISRNGNVLYSIRITLTLAC-PMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQEQG 202
BLAST of ph-sensitive chloride channel isoform x5 vs. SwissProt
Match: gi|12644459|sp|Q64018.2|GLRA1_MOUSE (RecName: Full=Glycine receptor subunit alpha-1; AltName: Full=Glycine receptor 48 kDa subunit; AltName: Full=Glycine receptor strychnine-binding subunit; Flags: Precursor) HSP 1 Score: 65.855 bits (159), Expect = 2.869e-11 Identity = 51/172 (29.65%), Postives = 77/172 (44.77%), Query Frame = 0 Query: 38 LSDREILDHLVHRQR-YDRREVPPSVGPLIINASLALISLHLEESADIQPKMTFSLEFGQSWFDPRLIHVGNQRYPYLN---GINHYDDLWTPDLYFHNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRWSQPG 205 +S + LD L+ R YD R P GP +N S + A+ ++ Q W DPRL + YP + + D +W PDL+F N K N+ LR+ NG+V S+R+ L C D FP D C++Q +S + M D+++ W + G Sbjct: 36 MSPSDFLDKLMGRTSGYDARIRPNFKGP-PVNVSCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAY---NEYPDDSLDLDPSMLDSIWKPDLFFANEKGAHFHEITTDNKLLRISRNGNVLYSIRITLTLAC-PMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQEQG 202
BLAST of ph-sensitive chloride channel isoform x5 vs. SwissProt
Match: gi|6647527|sp|O93430.1|GLRA1_DANRE (RecName: Full=Glycine receptor subunit alphaZ1; Flags: Precursor) HSP 1 Score: 64.6994 bits (156), Expect = 6.612e-11 Identity = 49/168 (29.17%), Postives = 75/168 (44.64%), Query Frame = 0 Query: 42 EILDHLVHRQR-YDRREVPPSVGPLIINASLALISLHLEESADIQPKMTFSLEFGQSWFDPRLIHVGNQRYPYLN---GINHYDDLWTPDLYFHNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRWSQPG 205 E LD L+ + YD R P GP +N + + A+ ++ Q W DPRL + YP + + D +W PDL+F N K N+ LR+ NG+V S+R+ L C D FP D C++Q +S + M D+++ W + G Sbjct: 36 EFLDKLMGKVSGYDARIRPNFKGP-PVNVTCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAY---SEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRISKNGNVLYSIRITLVLAC-PMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWDEKG 198
BLAST of ph-sensitive chloride channel isoform x5 vs. SwissProt
Match: gi|66774025|sp|Q91XP5.2|GLRA3_MOUSE (RecName: Full=Glycine receptor subunit alpha-3; Flags: Precursor) HSP 1 Score: 64.6994 bits (156), Expect = 6.973e-11 Identity = 50/168 (29.76%), Postives = 75/168 (44.64%), Query Frame = 0 Query: 38 LSDREILDHLVHRQR-YDRREVPPSVGPLIINASLALISLHLEESADIQPKMTFSLEFGQSWFDPRLIHVGNQRYPYLN---GINHYDDLWTPDLYFHNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRW 201 +S + LD L+ R YD R P GP +N + + A+ ++ Q W DPRL + YP + + D +W PDL+F N K N+ LR+ NG+V S+RL L C D FP D C++Q +S + M D+++ W Sbjct: 41 MSPSDFLDKLMGRTSGYDARIRPNFKGP-PVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAY---SEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSC-PMDLKNFPMDVQTCIMQLESFGYTMNDLIFEW 203
BLAST of ph-sensitive chloride channel isoform x5 vs. nr
Match: gi|1325329455|ref|XP_023346592.1| (glycine receptor subunit alpha-3-like [Eurytemora affinis]) HSP 1 Score: 124.02 bits (310), Expect = 8.323e-30 Identity = 68/174 (39.08%), Postives = 100/174 (57.47%), Query Frame = 0 Query: 38 LSDREILDHLVHRQRYDRREVPPSVGPLIINASLALISLHLEESADIQPKMTFSLEFGQSWFDPRLIHVGNQRYPYLNGINHYDDLWTPDLYFHNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRWSQPGRFDHDS 211 LSD+EILD L+H QRYDRR PPS L +N S+ L+SL + + + ++ F + Q W DPRL H +YP+LN ++H+ D+W PD+YF T + + N ++ A+++ NG+V SMR L C D FPFD C +SVS ++++ W+ P R DS Sbjct: 60 LSDKEILDLLLHTQRYDRRIKPPSSAALRVNISVVLLSLSSPDESSLHYEVEFLMH--QKWVDPRLAHNNGNQYPFLNALHHHGDIWKPDIYFIKHGTFKENL-NPTSIAMKIFENGTVLYSMRRHLVLNCEG-DLHIFPFDSPMCTFSIESVSFTSDEMVFHWAGPNRIADDS 229
BLAST of ph-sensitive chloride channel isoform x5 vs. nr
Match: gi|780631057|ref|XP_011685478.1| (PREDICTED: glutamate-gated chloride channel subunit beta-like [Wasmannia auropunctata]) HSP 1 Score: 108.612 bits (270), Expect = 4.485e-25 Identity = 62/165 (37.58%), Postives = 97/165 (58.79%), Query Frame = 0 Query: 39 SDREILDHLVHRQRYDRREVPPSVGPLIINASLALISLHLEESADIQPKMTFSLEFGQSWFDPRLIHVGNQRYPYLNGINHYDDLWTPDLYF--HNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRW 201 SD+EILD+L+ RYD+R +PP G L +N S+ L+SL + + ++ ++ F L+ Q W+DPRL + +Y +LN I+HYD++W PD YF H +P ++P + ALR+ NG+V MR L C+ + FPFD C +S+S+E + + W Sbjct: 41 SDKEILDNLLQSTRYDKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQ--QQWYDPRLRYSNRSKYEFLNAIHHYDNIWLPDTYFIMHGDFKDP-LIP--VHFALRIYRNGTVNYLMRRHLILSCQGRLNI-FPFDDPLCSFAIESISYEQTAITYVW 199
BLAST of ph-sensitive chloride channel isoform x5 vs. nr
Match: gi|1314962588|ref|XP_023162139.1| (uncharacterized protein LOC111593544 isoform X4 [Drosophila hydei]) HSP 1 Score: 113.62 bits (283), Expect = 4.907e-25 Identity = 64/189 (33.86%), Postives = 107/189 (56.61%), Query Frame = 0 Query: 28 PSWKWWRYHDLS-DREILDHLVHRQRYDRREVPPSVGPLIINASLALISLHLEESADIQPKMTFSLEFGQSWFDPRLIHVGNQRYPYLNGINHYDDLWTPDLYF--HNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRWSQPGRFDHDSLK 213 P W ++ + S D+EILD L+ ++RYD+R +PP G L +N ++ L+SL + + ++ ++ F L Q W DPRL + Y +LN ++H+D +WTPD YF H +P ++P + ALR+ NG++ +MR L C+ + FPFD +C +S+S+E + + W D D+L+ Sbjct: 277 PIIDWSKFDESSSDKEILDLLLEKKRYDKRLLPPVNGTLTVNVNVLLLSLASPDESSLKYEVEFLLN--QQWNDPRLQYGNKSHYDFLNALHHHDSIWTPDTYFIMHGDFKDP-IIP--MHFALRIFRNGTITYAMRRHLILSCQGSLHI-FPFDDPKCSFSMESISYEEAQIKYVWKN----DEDTLR 455
BLAST of ph-sensitive chloride channel isoform x5 vs. nr
Match: gi|1236499260|ref|XP_022227677.1| (glycine receptor subunit alpha-3 isoform X21 [Drosophila obscura]) HSP 1 Score: 113.62 bits (283), Expect = 5.412e-25 Identity = 62/177 (35.03%), Postives = 102/177 (57.63%), Query Frame = 0 Query: 39 SDREILDHLVHRQRYDRREVPPSVGPLIINASLALISLHLEESADIQPKMTFSLEFGQSWFDPRLIHVGNQRYPYLNGINHYDDLWTPDLYF--HNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRWSQPGRFDHDSLK 213 SD+EILD L+ ++RYD+R +PP G L +N ++ L+SL + + ++ ++ F L Q W DPRL + Y +LN ++H+D +WTPD YF H +P ++P + ALR+ NG++ +MR L C+ + FPFD +C +S+S+E + + W D D+L+ Sbjct: 416 SDKEILDLLLEKKRYDKRLLPPVNGTLTVNVNVLLLSLASPDESSLKYEVEFLLN--QQWNDPRLQYGNKSHYDFLNALHHHDSIWTPDTYFIMHGDFKDP-IIP--MHFALRIFRNGTITYAMRRHLILSCQGSLHI-FPFDDPKCSFSMESISYEEAQIKYVWKN----DEDTLR 582
BLAST of ph-sensitive chloride channel isoform x5 vs. nr
Match: gi|1218233758|ref|XP_021698503.1| (gamma-aminobutyric acid receptor subunit alpha-4 isoform X8 [Aedes aegypti]) HSP 1 Score: 113.62 bits (283), Expect = 5.471e-25 Identity = 65/177 (36.72%), Postives = 101/177 (57.06%), Query Frame = 0 Query: 39 SDREILDHLVHRQRYDRREVPPSVGPLIINASLALISLHLEESADIQPKMTFSLEFGQSWFDPRLIHVGNQRYPYLNGINHYDDLWTPDLYF--HNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRWSQPGRFDHDSLK 213 SD+EILDHL+ RYD+R +PP G L +N S+ L+SL + + ++ ++ F L+ Q W+DPRL + Y YLN I+H++D+W PD YF H +P ++P + ALR+ NG++ MR L C+ + FPFD C +S+S+E + + W D D+L+ Sbjct: 343 SDKEILDHLLTAARYDKRLLPPVDGSLTVNISVLLLSLASPDESSLKYEVEFLLQ--QQWYDPRLRYANQSSYEYLNAIHHHEDIWIPDTYFIMHGDFKDP-LIP--MHFALRIYRNGTINYLMRRHLILSCQGRLNI-FPFDDPLCSFALESISYEQSAIRYVWKN----DEDTLR 509
BLAST of ph-sensitive chloride channel isoform x5 vs. nr
Match: gi|1236499238|ref|XP_022227666.1| (uncharacterized protein LOC111077641 isoform X10 [Drosophila obscura]) HSP 1 Score: 113.62 bits (283), Expect = 6.141e-25 Identity = 62/177 (35.03%), Postives = 102/177 (57.63%), Query Frame = 0 Query: 39 SDREILDHLVHRQRYDRREVPPSVGPLIINASLALISLHLEESADIQPKMTFSLEFGQSWFDPRLIHVGNQRYPYLNGINHYDDLWTPDLYF--HNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRWSQPGRFDHDSLK 213 SD+EILD L+ ++RYD+R +PP G L +N ++ L+SL + + ++ ++ F L Q W DPRL + Y +LN ++H+D +WTPD YF H +P ++P + ALR+ NG++ +MR L C+ + FPFD +C +S+S+E + + W D D+L+ Sbjct: 416 SDKEILDLLLEKKRYDKRLLPPVNGTLTVNVNVLLLSLASPDESSLKYEVEFLLN--QQWNDPRLQYGNKSHYDFLNALHHHDSIWTPDTYFIMHGDFKDP-IIP--MHFALRIFRNGTITYAMRRHLILSCQGSLHI-FPFDDPKCSFSMESISYEEAQIKYVWKN----DEDTLR 582
BLAST of ph-sensitive chloride channel isoform x5 vs. nr
Match: gi|1236499266|ref|XP_022227681.1| (glycine receptor subunit alpha-3 isoform X24 [Drosophila obscura]) HSP 1 Score: 113.235 bits (282), Expect = 6.592e-25 Identity = 62/177 (35.03%), Postives = 102/177 (57.63%), Query Frame = 0 Query: 39 SDREILDHLVHRQRYDRREVPPSVGPLIINASLALISLHLEESADIQPKMTFSLEFGQSWFDPRLIHVGNQRYPYLNGINHYDDLWTPDLYF--HNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRWSQPGRFDHDSLK 213 SD+EILD L+ ++RYD+R +PP G L +N ++ L+SL + + ++ ++ F L Q W DPRL + Y +LN ++H+D +WTPD YF H +P ++P + ALR+ NG++ +MR L C+ + FPFD +C +S+S+E + + W D D+L+ Sbjct: 423 SDKEILDLLLEKKRYDKRLLPPVNGTLTVNVNVLLLSLASPDESSLKYEVEFLLN--QQWNDPRLQYGNKSHYDFLNALHHHDSIWTPDTYFIMHGDFKDP-IIP--MHFALRIFRNGTITYAMRRHLILSCQGSLHI-FPFDDPKCSFSMESISYEEAQIKYVWKN----DEDTLR 589
BLAST of ph-sensitive chloride channel isoform x5 vs. nr
Match: gi|166851820|ref|NP_001107777.1| (pH-sensitive chloride channel precursor [Tribolium castaneum] >gi|642914731|ref|XP_008190329.1| PREDICTED: pH-sensitive chloride channel isoform X17 [Tribolium castaneum] >gi|156447623|gb|ABU63604.1| pH sensitive chloride channel [Tribolium castaneum]) HSP 1 Score: 111.694 bits (278), Expect = 6.819e-25 Identity = 66/177 (37.29%), Postives = 105/177 (59.32%), Query Frame = 0 Query: 39 SDREILDHLVHRQRYDRREVPPSVGPLIINASLALISLHLEESADIQPKMTFSLEFGQSWFDPRLIHVGNQRYPYLNGINHYDDLWTPDLYF--HNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRWSQPGRFDHDSLK 213 SD+EILD+L+ RYD+R +PP + ++ S+ L+SL + + ++ ++ F L+ Q WFDPRL + RY +LN I+H++D+W PD YF H +P ++P + +LR+ NG+V+ SMR L C+ + FPFD +C +S+S+EMK + + W D D LK Sbjct: 32 SDKEILDNLLRATRYDKRLLPPVQETVKVDVSVLLLSLASPDESSLKYEVEFLLQ--QQWFDPRLKYSNQSRYDFLNAIHHHNDIWLPDTYFIMHGDFKDP-LIP--MHFSLRIYRNGTVFYSMRRHLILSCQGHLNI-FPFDDPECSFSLESISYEMKSIKYVWKN----DEDVLK 198
BLAST of ph-sensitive chloride channel isoform x5 vs. nr
Match: gi|1314962598|ref|XP_023162145.1| (uncharacterized protein LOC111593544 isoform X9 [Drosophila hydei]) HSP 1 Score: 113.235 bits (282), Expect = 6.841e-25 Identity = 64/189 (33.86%), Postives = 107/189 (56.61%), Query Frame = 0 Query: 28 PSWKWWRYHDLS-DREILDHLVHRQRYDRREVPPSVGPLIINASLALISLHLEESADIQPKMTFSLEFGQSWFDPRLIHVGNQRYPYLNGINHYDDLWTPDLYF--HNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRWSQPGRFDHDSLK 213 P W ++ + S D+EILD L+ ++RYD+R +PP G L +N ++ L+SL + + ++ ++ F L Q W DPRL + Y +LN ++H+D +WTPD YF H +P ++P + ALR+ NG++ +MR L C+ + FPFD +C +S+S+E + + W D D+L+ Sbjct: 277 PIIDWSKFDESSSDKEILDLLLEKKRYDKRLLPPVNGTLTVNVNVLLLSLASPDESSLKYEVEFLLN--QQWNDPRLQYGNKSHYDFLNALHHHDSIWTPDTYFIMHGDFKDP-IIP--MHFALRIFRNGTITYAMRRHLILSCQGSLHI-FPFDDPKCSFSMESISYEEAQIKYVWKN----DEDTLR 455
BLAST of ph-sensitive chloride channel isoform x5 vs. nr
Match: gi|1236499242|ref|XP_022227668.1| (uncharacterized protein LOC111077641 isoform X12 [Drosophila obscura]) HSP 1 Score: 113.235 bits (282), Expect = 6.910e-25 Identity = 62/177 (35.03%), Postives = 102/177 (57.63%), Query Frame = 0 Query: 39 SDREILDHLVHRQRYDRREVPPSVGPLIINASLALISLHLEESADIQPKMTFSLEFGQSWFDPRLIHVGNQRYPYLNGINHYDDLWTPDLYF--HNLKTEPQMVPNGSNQALRVLVNGSVWLSMRLDGYLPCRSTDSAKFPFDKVQCVLQAKSVSHEMKDVLWRWSQPGRFDHDSLK 213 SD+EILD L+ ++RYD+R +PP G L +N ++ L+SL + + ++ ++ F L Q W DPRL + Y +LN ++H+D +WTPD YF H +P ++P + ALR+ NG++ +MR L C+ + FPFD +C +S+S+E + + W D D+L+ Sbjct: 416 SDKEILDLLLEKKRYDKRLLPPVNGTLTVNVNVLLLSLASPDESSLKYEVEFLLN--QQWNDPRLQYGNKSHYDFLNALHHHDSIWTPDTYFIMHGDFKDP-IIP--MHFALRIFRNGTITYAMRRHLILSCQGSLHI-FPFDDPKCSFSMESISYEEAQIKYVWKN----DEDTLR 582 The following BLAST results are available for this feature:
BLAST of ph-sensitive chloride channel isoform x5 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 6
BLAST of ph-sensitive chloride channel isoform x5 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of ph-sensitive chloride channel isoform x5 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold145_size311916:186528..189059- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold145_size311916-snap-gene-2.18 ID=maker-scaffold145_size311916-snap-gene-2.18|Name=ph-sensitive chloride channel isoform x5|organism=Tigriopus kingsejongensis|type=gene|length=2532bp|location=Sequence derived from alignment at scaffold145_size311916:186528..189059- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'ph-sensitive chloride channel isoform x5' has the following synonyms
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