short stature homeobox, maker-scaffold1491_size38540-snap-gene-0.10 (gene) Tigriopus kingsejongensis

Overview
Nameshort stature homeobox
Unique Namemaker-scaffold1491_size38540-snap-gene-0.10
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of short stature homeobox vs. L. salmonis genes
Match: EMLSAG00000003245 (supercontig:LSalAtl2s:LSalAtl2s178:264748:266715:1 gene:EMLSAG00000003245 transcript:EMLSAT00000003245 description:"maker-LSalAtl2s178-snap-gene-2.38")

HSP 1 Score: 144.05 bits (362), Expect = 1.006e-44
Identity = 68/78 (87.18%), Postives = 71/78 (91.03%), Query Frame = 0 
Query:   30 PRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSV---TATPTPIG 104
            PRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRL LSEARVQVWFQNRRAKCRKHES HFK +   +A+ TPIG
Sbjct:   62 PRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLRLSEARVQVWFQNRRAKCRKHESHHFKGISSSSASITPIG 139
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BLAST of short stature homeobox vs. L. salmonis genes
Match: EMLSAG00000005359 (supercontig:LSalAtl2s:LSalAtl2s289:230955:236378:-1 gene:EMLSAG00000005359 transcript:EMLSAT00000005359 description:"maker-LSalAtl2s289-augustus-gene-2.27")

HSP 1 Score: 88.9669 bits (219), Expect = 7.606e-23
Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 0 
Query:   31 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSVTATPT-PIGNN 106
            RR RT FT EQL ELE  F ++HYPD + REEL+    L+EAR+QVWFQNRRAK RK E Q  K++ A+P+ P  NN
Sbjct:   88 RRHRTTFTQEQLQELETAFSKSHYPDIYCREELARSTKLNEARIQVWFQNRRAKXRKQEKQLQKALXASPSLPQCNN 164
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BLAST of short stature homeobox vs. L. salmonis genes
Match: EMLSAG00000005402 (supercontig:LSalAtl2s:LSalAtl2s290:359580:380960:-1 gene:EMLSAG00000005402 transcript:EMLSAT00000005402 description:"maker-LSalAtl2s290-snap-gene-3.19")

HSP 1 Score: 88.1965 bits (217), Expect = 1.295e-22
Identity = 47/90 (52.22%), Postives = 56/90 (62.22%), Query Frame = 0 
Query:    8 LENPGKTPGDSSMDLTSQNNN--------KPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHE 89
            + N   TP   S  + +  NN        K RR RT FT  QL ELER F ETHYPD + REE++ ++ L+EARVQVWFQNRRAK RK E
Sbjct:   29 MMNTHGTPTGLSYKMYTPTNNDGSISEKRKQRRIRTTFTSVQLKELERSFQETHYPDIYTREEIAMKIDLTEARVQVWFQNRRAKFRKSE 118
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BLAST of short stature homeobox vs. L. salmonis genes
Match: EMLSAG00000003502 (supercontig:LSalAtl2s:LSalAtl2s191:124333:132494:1 gene:EMLSAG00000003502 transcript:EMLSAT00000003502 description:"maker-LSalAtl2s191-augustus-gene-1.11")

HSP 1 Score: 86.2705 bits (212), Expect = 3.617e-22
Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 0 
Query:   29 KPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHE 89
            K RRSRT FT  QL++LE  FD+T YPD + RE+L+ RL L+EARVQVWFQNRRAK RK E
Sbjct:   70 KIRRSRTTFTTSQLHQLELTFDKTQYPDVYTREDLAMRLELTEARVQVWFQNRRAKWRKRE 130
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BLAST of short stature homeobox vs. L. salmonis genes
Match: EMLSAG00000011960 (supercontig:LSalAtl2s:LSalAtl2s849:170721:174764:-1 gene:EMLSAG00000011960 transcript:EMLSAT00000011960 description:"maker-LSalAtl2s849-snap-gene-0.24")

HSP 1 Score: 82.4185 bits (202), Expect = 4.198e-21
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 0 
Query:   31 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRK 87
            +R RT+F+  QL ELE  F+ THYPD + RE ++D+LGLSEARVQVWFQNRRAK R+
Sbjct:   88 KRHRTSFSHFQLCELEIAFESTHYPDVYFRELIADKLGLSEARVQVWFQNRRAKWRR 144
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BLAST of short stature homeobox vs. L. salmonis genes
Match: EMLSAG00000005639 (supercontig:LSalAtl2s:LSalAtl2s303:208734:276994:1 gene:EMLSAG00000005639 transcript:EMLSAT00000005639 description:"augustus_masked-LSalAtl2s303-processed-gene-2.0")

HSP 1 Score: 85.1149 bits (209), Expect = 4.760e-21
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 0 
Query:   29 KPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHE 89
            K RRSRTNF+  QL ELER+F   HYPD FMRE L+ +L L E+R+ VWFQNRRAK RK E
Sbjct:  241 KRRRSRTNFSQWQLEELERVFQSCHYPDVFMREALALKLDLKESRISVWFQNRRAKFRKKE 301
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BLAST of short stature homeobox vs. L. salmonis genes
Match: EMLSAG00000004664 (supercontig:LSalAtl2s:LSalAtl2s242:897246:900136:1 gene:EMLSAG00000004664 transcript:EMLSAT00000004664 description:"maker-LSalAtl2s242-snap-gene-9.16")

HSP 1 Score: 83.9593 bits (206), Expect = 1.154e-20
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 0 
Query:   29 KPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHE 89
            K RR+RT FT  QL+ELER F+++HYPD + REEL+ ++ L E RVQVWFQNRRAK R+ E
Sbjct:  180 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQE 240
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BLAST of short stature homeobox vs. L. salmonis genes
Match: EMLSAG00000006559 (supercontig:LSalAtl2s:LSalAtl2s35:172755:207694:-1 gene:EMLSAG00000006559 transcript:EMLSAT00000006559 description:"augustus_masked-LSalAtl2s35-processed-gene-2.1")

HSP 1 Score: 83.1889 bits (204), Expect = 1.206e-20
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0 
Query:   27 NNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQN 80
            N K +R RT F+  QLNELER F +THYPD FMREEL+ R+GL+E+RVQVWFQN
Sbjct:  104 NGKQKRHRTRFSPSQLNELERSFSKTHYPDIFMREELAMRIGLTESRVQVWFQN 157
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BLAST of short stature homeobox vs. L. salmonis genes
Match: EMLSAG00000002762 (supercontig:LSalAtl2s:LSalAtl2s15:159436:165491:-1 gene:EMLSAG00000002762 transcript:EMLSAT00000002762 description:"maker-LSalAtl2s15-augustus-gene-2.14")

HSP 1 Score: 82.0333 bits (201), Expect = 1.421e-20
Identity = 37/63 (58.73%), Postives = 46/63 (73.02%), Query Frame = 0 
Query:   29 KPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQ 91
            K RR RT FT  QL+ LE LF +T YPD FMREE++ ++   E+RVQVWF+NRRAKCR+   Q
Sbjct:    5 KQRRERTTFTRAQLDILESLFAKTRYPDIFMREEVALKINXPESRVQVWFKNRRAKCRQQAKQ 67
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BLAST of short stature homeobox vs. L. salmonis genes
Match: EMLSAG00000006914 (supercontig:LSalAtl2s:LSalAtl2s391:492330:496106:1 gene:EMLSAG00000006914 transcript:EMLSAT00000006914 description:"maker-LSalAtl2s391-augustus-gene-5.28")

HSP 1 Score: 81.6481 bits (200), Expect = 6.519e-20
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 0 
Query:   37 FTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHE 89
            F+  QL ELER F  THYPD F REE++ ++GL+EAR+QVWFQNRRAK RK E
Sbjct:  123 FSSFQLEELERAFSRTHYPDVFTREEMAMKIGLTEARIQVWFQNRRAKWRKQE 175
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BLAST of short stature homeobox vs. SwissProt
Match: gi|18202029|sp|O35750.2|SHOX2_RAT (RecName: Full=Short stature homeobox protein 2; AltName: Full=Paired family homeodomain protein Prx3)

HSP 1 Score: 128.642 bits (322), Expect = 2.705e-37
Identity = 63/78 (80.77%), Postives = 65/78 (83.33%), Query Frame = 0 
Query:   19 SMDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSV 96
             M+   Q   K RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRK E+Q  K V
Sbjct:   35 GMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGV 112
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BLAST of short stature homeobox vs. SwissProt
Match: gi|6831676|sp|O15266.1|SHOX_HUMAN (RecName: Full=Short stature homeobox protein; AltName: Full=Pseudoautosomal homeobox-containing osteogenic protein; AltName: Full=Short stature homeobox-containing protein)

HSP 1 Score: 129.413 bits (324), Expect = 4.327e-37
Identity = 64/79 (81.01%), Postives = 65/79 (82.28%), Query Frame = 0 
Query:   19 SMDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSVT 97
            S D   Q   K RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRK E+Q  K V 
Sbjct:  106 SEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVI 184
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BLAST of short stature homeobox vs. SwissProt
Match: gi|145559528|sp|O60902.4|SHOX2_HUMAN (RecName: Full=Short stature homeobox protein 2; AltName: Full=Homeobox protein Og12X; AltName: Full=Paired-related homeobox protein SHOT)

HSP 1 Score: 129.413 bits (324), Expect = 9.637e-37
Identity = 63/78 (80.77%), Postives = 65/78 (83.33%), Query Frame = 0 
Query:   19 SMDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSV 96
             M+   Q   K RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRK E+Q  K V
Sbjct:  129 GMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGV 206
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BLAST of short stature homeobox vs. SwissProt
Match: gi|18202340|sp|P70390.1|SHOX2_MOUSE (RecName: Full=Short stature homeobox protein 2; AltName: Full=Homeobox protein Og12X; Short=OG-12; AltName: Full=Paired family homeodomain protein Prx3)

HSP 1 Score: 129.028 bits (323), Expect = 1.299e-36
Identity = 63/78 (80.77%), Postives = 65/78 (83.33%), Query Frame = 0 
Query:   19 SMDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSV 96
             M+   Q   K RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRK E+Q  K V
Sbjct:  129 GMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGV 206
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BLAST of short stature homeobox vs. SwissProt
Match: gi|6093753|sp|O35690.1|PHX2B_MOUSE (RecName: Full=Paired mesoderm homeobox protein 2B; AltName: Full=Neuroblastoma Phox; Short=NBPhox; AltName: Full=PHOX2B homeodomain protein; AltName: Full=Paired-like homeobox 2B >gi|116242712|sp|Q99453.2|PHX2B_HUMAN RecName: Full=Paired mesoderm homeobox protein 2B; AltName: Full=Neuroblastoma Phox; Short=NBPhox; AltName: Full=PHOX2B homeodomain protein; AltName: Full=Paired-like homeobox 2B)

HSP 1 Score: 90.1225 bits (222), Expect = 7.094e-22
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 0 
Query:   29 KPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHE 89
            K RR RT FT  QL ELER+F ETHYPD + REEL+ ++ L+EARVQVWFQNRRAK RK E
Sbjct:   97 KQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQE 157
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BLAST of short stature homeobox vs. SwissProt
Match: gi|6094305|sp|Q26602.1|SMOX3_SCHMA (RecName: Full=Homeobox protein SMOX-3)

HSP 1 Score: 89.7373 bits (221), Expect = 7.374e-22
Identity = 48/81 (59.26%), Postives = 54/81 (66.67%), Query Frame = 0 
Query:   29 KPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSVTATPT---PIGNN 106
            K RR RT FT  QL ELER F ETHYPD + RE+L+ R+ L+EARVQVWFQNRRAK RK E       T TP+   PI  N
Sbjct:    3 KQRRIRTTFTSLQLKELERAFQETHYPDIYTREDLALRIDLTEARVQVWFQNRRAKFRKTERVIQPDTTTTPSSSIPINMN 83
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BLAST of short stature homeobox vs. SwissProt
Match: gi|158513808|sp|A6NNA5.1|DRGX_HUMAN (RecName: Full=Dorsal root ganglia homeobox protein; AltName: Full=Paired-related homeobox protein-like 1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.252e-22
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 0 
Query:   29 KPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHE 89
            K RR+RT FTL+QL  LE +F +THYPD F REEL+ ++ L+EARVQVWFQNRRAK RK E
Sbjct:   32 KQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTE 92
[Close]
BLAST of short stature homeobox vs. SwissProt
Match: gi|317373355|sp|Q8BYH0.2|DRGX_MOUSE (RecName: Full=Dorsal root ganglia homeobox protein; AltName: Full=Dorsal root ganglion 11; AltName: Full=Homeobox protein DRG11; AltName: Full=Paired-related homeobox protein-like 1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.339e-22
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 0 
Query:   29 KPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHE 89
            K RR+RT FTL+QL  LE +F +THYPD F REEL+ ++ L+EARVQVWFQNRRAK RK E
Sbjct:   32 KQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTE 92
[Close]
BLAST of short stature homeobox vs. SwissProt
Match: gi|27923733|sp|Q96QS3.1|ARX_HUMAN (RecName: Full=Homeobox protein ARX; AltName: Full=Aristaless-related homeobox)

HSP 1 Score: 91.2781 bits (225), Expect = 1.026e-21
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 0 
Query:    1 LHQESNELENPGKTPGDSSMDLTSQNNN-------KPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHE 89
            LH E  E ++     G+ S+ L++ +++       K RR RT FT  QL ELER F +THYPD F REEL+ RL L+EARVQVWFQNRRAK RK E
Sbjct:  297 LHPEDAEGKD-----GEDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKRE 387
[Close]
BLAST of short stature homeobox vs. SwissProt
Match: gi|81870610|sp|P97830.1|UNC4_RAT (RecName: Full=Homeobox protein unc-4 homolog; AltName: Full=Homeobox protein Uncx4.1; AltName: Full=Paired-type homeodomain transcription factor 1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.041e-21
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 0 
Query:   31 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHE 89
            RR+RTNFT  QL ELE+ F+E+HYPD FMRE L+ RL L E+RVQVWFQNRRAK RK E
Sbjct:  110 RRTRTNFTGWQLEELEKAFNESHYPDVFMREALAVRLDLVESRVQVWFQNRRAKWRKKE 168
[Close]
BLAST of short stature homeobox vs. nr
Match: gi|1351627268|ref|XP_014245082.2| (short stature homeobox protein-like, partial [Cimex lectularius])

HSP 1 Score: 134.806 bits (338), Expect = 2.176e-37
Identity = 67/85 (78.82%), Postives = 71/85 (83.53%), Query Frame = 0 
Query:   12 GKTPGDSSMDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSV 96
            G   G SS   +  ++NK RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRKHESQ  K+ 
Sbjct:   21 GIGSGQSSPCPSKASSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHESQMHKAA 105
[Close]
BLAST of short stature homeobox vs. nr
Match: gi|242013225|ref|XP_002427315.1| (Short stature homeobox protein, putative [Pediculus humanus corporis] >gi|212511656|gb|EEB14577.1| Short stature homeobox protein, putative [Pediculus humanus corporis])

HSP 1 Score: 134.42 bits (337), Expect = 2.369e-37
Identity = 66/81 (81.48%), Postives = 71/81 (87.65%), Query Frame = 0 
Query:   23 TSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKS-VTATPTP 102
            +S+  NK RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRKHESQ  K  + ++ TP
Sbjct:   24 SSKLQNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHESQMQKGMIVSSHTP 104
[Close]
BLAST of short stature homeobox vs. nr
Match: gi|1121127198|ref|XP_019551508.1| (PREDICTED: short stature homeobox protein 2-like [Aedes albopictus])

HSP 1 Score: 135.961 bits (341), Expect = 4.524e-37
Identity = 65/82 (79.27%), Postives = 69/82 (84.15%), Query Frame = 0 
Query:   16 GDSSMDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSVT 97
            G  +  L S  NNK RRSRTNFTLEQLNELERLF+ETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRKHE+Q  K + 
Sbjct:   51 GVGATGLGSLANNKQRRSRTNFTLEQLNELERLFEETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHENQLHKGII 132
[Close]
BLAST of short stature homeobox vs. nr
Match: gi|1059382290|ref|XP_017785965.1| (PREDICTED: short stature homeobox protein-like [Nicrophorus vespilloides])

HSP 1 Score: 138.272 bits (347), Expect = 6.622e-37
Identity = 63/76 (82.89%), Postives = 71/76 (93.42%), Query Frame = 0 
Query:   16 GDSSMDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQ 91
            G S++++++++  K RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRKHESQ
Sbjct:  200 GPSAINISAKSATKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHESQ 275
[Close]
BLAST of short stature homeobox vs. nr
Match: gi|1330878003|gb|PNF16407.1| (Short stature homeobox protein 2, partial [Cryptotermes secundus])

HSP 1 Score: 132.494 bits (332), Expect = 8.572e-37
Identity = 64/72 (88.89%), Postives = 65/72 (90.28%), Query Frame = 0 
Query:   28 NKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSVTAT 99
            NK RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRKHESQ  K +  T
Sbjct:    7 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHESQMQKGMMLT 78
[Close]
BLAST of short stature homeobox vs. nr
Match: gi|970905643|ref|XP_015118768.1| (PREDICTED: short stature homeobox protein 2-like [Diachasma alloeum])

HSP 1 Score: 135.576 bits (340), Expect = 9.063e-37
Identity = 64/73 (87.67%), Postives = 65/73 (89.04%), Query Frame = 0 
Query:   26 NNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSVTA 98
             N K RRSRTNFTLEQL ELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRKHESQ  K +TA
Sbjct:  125 GNGKQRRSRTNFTLEQLAELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHESQLHKGITA 197
[Close]
BLAST of short stature homeobox vs. nr
Match: gi|678111637|gb|KFU88180.1| (Short stature homeobox protein 2, partial [Chaetura pelagica])

HSP 1 Score: 129.413 bits (324), Expect = 1.330e-36
Identity = 63/78 (80.77%), Postives = 66/78 (84.62%), Query Frame = 0 
Query:   19 SMDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSV 96
            +M+   Q   K RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRK E+Q  K V
Sbjct:   14 AMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGV 91
[Close]
BLAST of short stature homeobox vs. nr
Match: gi|1101397134|ref|XP_018909519.1| (PREDICTED: short stature homeobox protein 2-like [Bemisia tabaci] >gi|1101397136|ref|XP_018909520.1| PREDICTED: short stature homeobox protein 2-like [Bemisia tabaci])

HSP 1 Score: 135.191 bits (339), Expect = 1.339e-36
Identity = 64/73 (87.67%), Postives = 66/73 (90.41%), Query Frame = 0 
Query:   24 SQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSV 96
            S+  NK RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRKHESQ  K+ 
Sbjct:  122 SKLGNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHESQMHKAA 194
[Close]
BLAST of short stature homeobox vs. nr
Match: gi|1285028051|ref|XP_023026304.1| (short stature homeobox protein 2-like, partial [Leptinotarsa decemlineata])

HSP 1 Score: 132.88 bits (333), Expect = 1.447e-36
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 0 
Query:   17 DSSMD--LTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSV 96
            DSS++  ++ +++ K RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRKHE+Q  K V
Sbjct:   17 DSSINHSVSVKSSTKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHENQMQKGV 98
[Close]
BLAST of short stature homeobox vs. nr
Match: gi|1083279346|ref|XP_018588008.1| (PREDICTED: short stature homeobox protein 2 [Scleropages formosus])

HSP 1 Score: 131.339 bits (329), Expect = 1.636e-36
Identity = 64/77 (83.12%), Postives = 66/77 (85.71%), Query Frame = 0 
Query:   20 MDLTSQNNNKPRRSRTNFTLEQLNELERLFDETHYPDAFMREELSDRLGLSEARVQVWFQNRRAKCRKHESQHFKSV 96
            M+  SQ   K RRSRTNFTLEQLNELERLFDETHYPDAFMREELS RLGLSEARVQVWFQNRRAKCRK E+Q  K V
Sbjct:   49 MEDESQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGV 125
The following BLAST results are available for this feature:
BLAST of short stature homeobox vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25
Match NameE-valueIdentityDescription
EMLSAG000000032451.006e-4487.18supercontig:LSalAtl2s:LSalAtl2s178:264748:266715:1... [more]
EMLSAG000000053597.606e-2358.44supercontig:LSalAtl2s:LSalAtl2s289:230955:236378:-... [more]
EMLSAG000000054021.295e-2252.22supercontig:LSalAtl2s:LSalAtl2s290:359580:380960:-... [more]
EMLSAG000000035023.617e-2267.21supercontig:LSalAtl2s:LSalAtl2s191:124333:132494:1... [more]
EMLSAG000000119604.198e-2164.91supercontig:LSalAtl2s:LSalAtl2s849:170721:174764:-... [more]
EMLSAG000000056394.760e-2165.57supercontig:LSalAtl2s:LSalAtl2s303:208734:276994:1... [more]
EMLSAG000000046641.154e-2062.30supercontig:LSalAtl2s:LSalAtl2s242:897246:900136:1... [more]
EMLSAG000000065591.206e-2068.52supercontig:LSalAtl2s:LSalAtl2s35:172755:207694:-1... [more]
EMLSAG000000027621.421e-2058.73supercontig:LSalAtl2s:LSalAtl2s15:159436:165491:-1... [more]
EMLSAG000000069146.519e-2066.04supercontig:LSalAtl2s:LSalAtl2s391:492330:496106:1... [more]

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BLAST of short stature homeobox vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
gi|18202029|sp|O35750.2|SHOX2_RAT2.705e-3780.77RecName: Full=Short stature homeobox protein 2; Al... [more]
gi|6831676|sp|O15266.1|SHOX_HUMAN4.327e-3781.01RecName: Full=Short stature homeobox protein; AltN... [more]
gi|145559528|sp|O60902.4|SHOX2_HUMAN9.637e-3780.77RecName: Full=Short stature homeobox protein 2; Al... [more]
gi|18202340|sp|P70390.1|SHOX2_MOUSE1.299e-3680.77RecName: Full=Short stature homeobox protein 2; Al... [more]
gi|6093753|sp|O35690.1|PHX2B_MOUSE7.094e-2268.85RecName: Full=Paired mesoderm homeobox protein 2B;... [more]
gi|6094305|sp|Q26602.1|SMOX3_SCHMA7.374e-2259.26RecName: Full=Homeobox protein SMOX-3[more]
gi|158513808|sp|A6NNA5.1|DRGX_HUMAN8.252e-2267.21RecName: Full=Dorsal root ganglia homeobox protein... [more]
gi|317373355|sp|Q8BYH0.2|DRGX_MOUSE8.339e-2267.21RecName: Full=Dorsal root ganglia homeobox protein... [more]
gi|27923733|sp|Q96QS3.1|ARX_HUMAN1.026e-2153.13RecName: Full=Homeobox protein ARX; AltName: Full=... [more]
gi|81870610|sp|P97830.1|UNC4_RAT1.041e-2171.19RecName: Full=Homeobox protein unc-4 homolog; AltN... [more]

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BLAST of short stature homeobox vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1351627268|ref|XP_014245082.2|2.176e-3778.82short stature homeobox protein-like, partial [Cime... [more]
gi|242013225|ref|XP_002427315.1|2.369e-3781.48Short stature homeobox protein, putative [Pediculu... [more]
gi|1121127198|ref|XP_019551508.1|4.524e-3779.27PREDICTED: short stature homeobox protein 2-like [... [more]
gi|1059382290|ref|XP_017785965.1|6.622e-3782.89PREDICTED: short stature homeobox protein-like [Ni... [more]
gi|1330878003|gb|PNF16407.1|8.572e-3788.89Short stature homeobox protein 2, partial [Cryptot... [more]
gi|970905643|ref|XP_015118768.1|9.063e-3787.67PREDICTED: short stature homeobox protein 2-like [... [more]
gi|678111637|gb|KFU88180.1|1.330e-3680.77Short stature homeobox protein 2, partial [Chaetur... [more]
gi|1101397134|ref|XP_018909519.1|1.339e-3687.67PREDICTED: short stature homeobox protein 2-like [... [more]
gi|1285028051|ref|XP_023026304.1|1.447e-3679.27short stature homeobox protein 2-like, partial [Le... [more]
gi|1083279346|ref|XP_018588008.1|1.636e-3683.12PREDICTED: short stature homeobox protein 2 [Scler... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold1491_size38540supercontigscaffold1491_size38540:48..1739 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteP:regulation of transcription
Note DNA-dependent
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold1491_size38540-snap-gene-0.10-mRNA-1maker-scaffold1491_size38540-snap-gene-0.10-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold1491_size38540:48..1739-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold1491_size38540-snap-gene-0.10 ID=maker-scaffold1491_size38540-snap-gene-0.10|Name=short stature homeobox|organism=Tigriopus kingsejongensis|type=gene|length=1692bp|location=Sequence derived from alignment at scaffold1491_size38540:48..1739- (Tigriopus kingsejongensis)
GTCTTTCAACTGAGGACGATTCACCCACCAGCACTTTGCATCAGGAGAGC
AATGAGCTGGAGAACCCAGGCAAAACTCCAGGGGACTCTTCGATGGACTT
GACCTCTCAGAACAACAATAAACCCAGACGGAGCAGAACCAATTTCACTC
TAGAGCAATTGAACGAATTGGAGAGACTCTTTGACGAGACCCATTACCCT
GATGCATTCATGAGAGAGGAGCTAAGCGACAGATTGGGTCTGAGTGAAGC
GAGAGTACAGGTAAAGTAATGACAATAGTCCCGTAATTAATTTCATAGCA
AAGTCGCAGTGATCATTGGTACACTGGTCGCACTGTCGAGGACGAAACAG
ACACAACTCCAAAGTGTCAATCATTGACCAAACCAATCAGTTATGAGCCA
TTAAAGTCGATTATTTCACTGATTTATGGATGGAAAAACGATTATTTATC
TCTTACATCGATTTGTCGAAAAACAAAAAAGAATTATTGTTTTTTTCTGA
AATTAAATCGATTATCTCGTACATAGCGAAGCGACCTGCGAGGGACCAAT
CAGAGTAATCAGTTCGCAGGCCACTACGAGTAGAGGCTTGATGTGTGTAC
ATTCTGTCTTTTGCAGCGATCAGTACCAGCAGTCTCACATTGCATACTTC
CGACGATCTAGTGTGCTTTTGGATTGTTGGATGGATATAAGGATAGCCTA
TTGTAACCTATATAGTATATATATAAGCCAACTAGCGTGTGAATACAGAA
AAGTGAAATTCCAGGTTCCTTTATTTCACCGTATCAGGTCCCTTTCAGAG
TGCACAAAGGCTAATATTAGGCATGGGTAAACGAGTTAGTGATAGATTTG
ACACGCAAACATGTTTTAGTGGTGGTGGAGTTGATCGCTCATCAGTTTCA
ATTACAAGTTTGGATACACAACATTAGACCATCAGGGCACGCCCCGAGGG
ATGACCATTACTGGCAATCAATCAGTAGGGATGATCCTCTCTCATCAGAT
TCCCATTTTCTCAATCATCATCATTGGCGATGGATTCGTAACAGCGCCTC
TCAATCCACTGAAAACAATCCTTTTCGCGCACCAAGGTCCCCTTCAAGTG
ATCCACTGAAGAAAATATCCTCTCCAGTAATTGCTGGGAGTTTGAATGGA
ACACCTTGTAATACTGTATATTCGATGCAATTTGAATAGCAAGTTTCCAC
CCTGCAGGTGGGGGAGAAAATCCTTGTGTGATACAATCAAAAGTTGCCTA
GGGGACCATTTTAAGCAGTGGTGAACAATTCTGGCACTCAAACTTGGACG
ATGCTGTTCCCTCTTCGCTTTAAGAGCATCATCCATTTTCGTTTGGTGGG
ATCGATGTCCTGGATGGCAGATGCCCAAGCATCTCCGATTGTCGCCAATG
GTTCCTCCCAGGGAGTCCGAGCTGGTAGGCTGGCAGTATCCACCACAAAA
TGGCATCATCATTATCGCTGACTCGTGTCATTTGGTGGCCCAATCATCGC
TCATCAGAAAATGAGGACAGATTTTGGGTCCATATCTTGGGGCAGGGGGT
CACGGAAGCTGAGCTCAAGCGTAAACACGGCGATCCGATCTTCTAGGTTT
GGTTCCAAAACCGGCGAGCCAAGTGTCGGAAGCACGAGAGCCAGCATTTC
AAGTCGGTGACAGCCACGCCCACTCCGATTGGGAACAATCCG
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Synonyms
The feature 'short stature homeobox' has the following synonyms
Synonym
Tk08618
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