pdz and lim domain protein 3, maker-scaffold217_size252476-snap-gene-1.34 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of pdz and lim domain protein 3 vs. L. salmonis genes
Match: EMLSAG00000012325 (supercontig:LSalAtl2s:LSalAtl2s8:1441031:1454035:1 gene:EMLSAG00000012325 transcript:EMLSAT00000012325 description:"augustus_masked-LSalAtl2s8-processed-gene-15.0") HSP 1 Score: 126.331 bits (316), Expect = 1.181e-37 Identity = 53/122 (43.44%), Postives = 84/122 (68.85%), Query Frame = 0
Query: 65 QKLWPTLTKQGLDEAWGFSLISGADIGEGTAHWSGVVAHRHDQGRWIKVNSVRADSPAERAGIKHNDFIARINGQIVFHLALKDVDRIIRNTGTSLLLDIERDGPRSMMFDGGTHGQFLNYL 186
+K+ PTL + WGF+L++ ++ E A WSG+ R ++G W+KV S+R+D+PA AGI+ DFI RING +VF++ LK ++R+IRN+G L LD+ER+ +++++D G G LN+L
Sbjct: 3 KKMLPTLKRNSDAVPWGFTLLAEREVYENGAFWSGIQTKRLEEGNWLKVRSIRSDTPAYEAGIRSGDFITRINGNVVFYMDLKTIERLIRNSGNVLYLDVERNSEKNLLYDNGIKGVCLNFL 124
BLAST of pdz and lim domain protein 3 vs. L. salmonis genes
Match: EMLSAG00000011910 (supercontig:LSalAtl2s:LSalAtl2s83:648777:650831:1 gene:EMLSAG00000011910 transcript:EMLSAT00000011910 description:"maker-LSalAtl2s83-augustus-gene-6.20") HSP 1 Score: 62.7734 bits (151), Expect = 1.916e-12 Identity = 34/96 (35.42%), Postives = 50/96 (52.08%), Query Frame = 0
Query: 71 LTKQGLDEAWGFSLISGADIGEGTAHWSGVVAHRHDQGRWIKVNSVRADSPAERAGIKHNDFIARINGQIVFHLALKDVDRIIRNTGTSLLLDIER 166
L + G +E WGF +I G DQ +KV ++ SPAE AG+K D++ +ING+ VF ++ D + I+ +GTSL L ER
Sbjct: 10 LKRSGKNEPWGFVIIGG-----------------KDQNLTVKVGKIKPYSPAEEAGLKTMDYVWQINGKEVFEMSHNDCVKEIKESGTSLSLSTER 88
BLAST of pdz and lim domain protein 3 vs. nr
Match: gi|1325275059|ref|XP_023322197.1| (uncharacterized protein LOC111696722 [Eurytemora affinis]) HSP 1 Score: 124.405 bits (311), Expect = 2.554e-32 Identity = 58/125 (46.40%), Postives = 80/125 (64.00%), Query Frame = 0
Query: 65 QKLWPTLTKQGLDEAWGFSLISGADIGEGTAHWSGVVAHRHDQGRWIKVNSVRADSPAERAGIKHNDFIARINGQIVFHLALKDVDRIIRNTGTSLLLDIERDGPRSMMFDGGTHGQFLNYLYED 189
++L TLT+ D+ WGFS + DI E + WSG++ RH QG WI S+R +S AE +G+K ND I RING+IVFHL DV R+I +G +L LDIER+ +S +++ G H N+LY D
Sbjct: 31 ERLLLTLTRDTEDDPWGFSAVGSKDILEQSGFWSGIITARHQQGLWIAARSIRRESAAEVSGLKENDLITRINGRIVFHLTPDDVQRLIVKSGCTLYLDIERNVTKSRLYNSGLHQFSFNFLYND 155
BLAST of pdz and lim domain protein 3 vs. nr
Match: gi|225713230|gb|ACO12461.1| (PDZ and LIM domain protein 3 [Lepeophtheirus salmonis] >gi|225714146|gb|ACO12919.1| PDZ and LIM domain protein 3 [Lepeophtheirus salmonis] >gi|290462547|gb|ADD24321.1| PDZ and LIM domain protein 3 [Lepeophtheirus salmonis]) HSP 1 Score: 62.7734 bits (151), Expect = 1.759e-8 Identity = 34/96 (35.42%), Postives = 50/96 (52.08%), Query Frame = 0
Query: 71 LTKQGLDEAWGFSLISGADIGEGTAHWSGVVAHRHDQGRWIKVNSVRADSPAERAGIKHNDFIARINGQIVFHLALKDVDRIIRNTGTSLLLDIER 166
L + G +E WGF +I G DQ +KV ++ SPAE AG+K D++ +ING+ VF ++ D + I+ +GTSL L ER
Sbjct: 10 LKRSGKNEPWGFVIIGG-----------------KDQNLTVKVGKIKPYSPAEEAGLKTMDYVWQINGKEVFEMSHNDCVKEIKESGTSLSLSTER 88
BLAST of pdz and lim domain protein 3 vs. nr
Match: gi|290562191|gb|ADD38492.1| (PDZ and LIM domain protein 3 [Lepeophtheirus salmonis]) HSP 1 Score: 62.7734 bits (151), Expect = 1.794e-8 Identity = 34/96 (35.42%), Postives = 50/96 (52.08%), Query Frame = 0
Query: 71 LTKQGLDEAWGFSLISGADIGEGTAHWSGVVAHRHDQGRWIKVNSVRADSPAERAGIKHNDFIARINGQIVFHLALKDVDRIIRNTGTSLLLDIER 166
L + G +E WGF +I G DQ +KV ++ SPAE AG+K D++ +ING+ VF ++ D + I+ +GTSL L ER
Sbjct: 10 LKRSGKNEPWGFVIIGG-----------------KDQNLTVKVGKIKPYSPAEEAGLKTMDYVWQINGKEVFEMSHNDCVKEIKESGTSLSLSTER 88
BLAST of pdz and lim domain protein 3 vs. nr
Match: gi|669193515|gb|AII16463.1| (PDZ and LIM domain protein 3, partial [Paracyclopina nana]) HSP 1 Score: 62.3882 bits (150), Expect = 2.129e-8 Identity = 34/97 (35.05%), Postives = 49/97 (50.52%), Query Frame = 0
Query: 70 TLTKQGLDEAWGFSLISGADIGEGTAHWSGVVAHRHDQGRWIKVNSVRADSPAERAGIKHNDFIARINGQIVFHLALKDVDRIIRNTGTSLLLDIER 166
T+ + + WGF +I G DQ +KV V+ SPAE+AG+K D+I ING+ VF ++ + I+NTGT+L L ER
Sbjct: 9 TIERPSTNVPWGFVIIGG-----------------KDQALTVKVGKVKPYSPAEKAGLKPCDYIYTINGREVFEMSHNECVNEIKNTGTTLCLSTER 88
BLAST of pdz and lim domain protein 3 vs. nr
Match: gi|225712554|gb|ACO12123.1| (PDZ and LIM domain protein 3 [Lepeophtheirus salmonis]) HSP 1 Score: 60.8474 bits (146), Expect = 8.856e-8 Identity = 33/96 (34.38%), Postives = 49/96 (51.04%), Query Frame = 0
Query: 71 LTKQGLDEAWGFSLISGADIGEGTAHWSGVVAHRHDQGRWIKVNSVRADSPAERAGIKHNDFIARINGQIVFHLALKDVDRIIRNTGTSLLLDIER 166
L + G +E WGF +I G DQ +KV ++ PAE AG+K D++ +ING+ VF ++ D + I+ +GTSL L ER
Sbjct: 10 LKRSGKNEPWGFVIIGG-----------------KDQNLTVKVGKIKPYGPAEEAGLKTMDYVWQINGKEVFEMSHNDCVKEIKESGTSLSLSTER 88 The following BLAST results are available for this feature:
BLAST of pdz and lim domain protein 3 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 2
BLAST of pdz and lim domain protein 3 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of pdz and lim domain protein 3 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 5
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold217_size252476:167031..168279- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold217_size252476-snap-gene-1.34 ID=maker-scaffold217_size252476-snap-gene-1.34|Name=pdz and lim domain protein 3|organism=Tigriopus kingsejongensis|type=gene|length=1249bp|location=Sequence derived from alignment at scaffold217_size252476:167031..168279- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'pdz and lim domain protein 3' has the following synonyms
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