double-stranded rna-binding protein staufen homolog 2 isoform x7, maker-scaffold2236_size18378-snap-gene-0.8 (gene) Tigriopus kingsejongensis

Overview
Namedouble-stranded rna-binding protein staufen homolog 2 isoform x7
Unique Namemaker-scaffold2236_size18378-snap-gene-0.8
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. L. salmonis genes
Match: EMLSAG00000002431 (supercontig:LSalAtl2s:LSalAtl2s1464:38656:42603:-1 gene:EMLSAG00000002431 transcript:EMLSAT00000002431 description:"maker-LSalAtl2s1464-augustus-gene-0.13")

HSP 1 Score: 258.07 bits (658), Expect = 6.645e-75
Identity = 158/469 (33.69%), Postives = 240/469 (51.17%), Query Frame = 0 
Query:  170 KLHYLAAHNHLLPQFQARSDNGAFQTTLILGTETYEGAGATAKAAQQSAAQRALAETKYPKKTT-MRVRPPGSTSTSELNELATKKGLQVEFRFLEPPNFQYSAAMKQWKKEDMRAHYRVQLTIGGNLFLGEADMPQQAKHNASSQAIPVIQVLPDIKVVAQQQALKNVSSASTSSSDIQSDQSQISADATSPASQTTATTPTAVVHSVSEPSAL---LNRIAMSRNTPLVWEVVGESGPPHQKIFTLKCVLGEHQAMGTGSSKKLAKTLAASELIKTLPEDWRE------------------------PSTKSKKRAKKRAAQPD-----------STQRVAVPGAESEPPSASEDTSTPAPSAVLIGPVAPSPNKIAKKEPTEGKRIEEVIQAANPISALHEFAKRAKLPDPIFECVSENVLETWESKGKIFRKTEYTMRLDFKEKQYLASGTTKKQAKAEVAAAAW 599
            +LH  A  N+LL      + NG +  TL LG + + G G   K A+++AA +AL ET + +     +    G+T+TS+L+E+ATKKG+ VEF+F+EP NF++ ++M+ W K D+ + Y+V L +    F G+AD PQ+AKH AS++A+  ++ LPDI                                   P ++TT      VV  + E   +   LN IAM+      W +V + G PHQ+ FT    LG+H+ +GTGSSKK+AKT AA++++  +PE+W++                        P   +K   ++ AA P            S  +V  P  ++E P   ED STP  +      +A  P+ +          I E I ++NPIS L+E+ K+AK  DP+FECVSENV+ETW    +  +KTEY M+L  K+K Y  SG+ KK AK  +  + +
Sbjct:   91 RLHNYALQNNLLESXSTVNQNGGYVVTLTLGNQQFLGNGTNLKMAKEAAASQALRETSFIENDVQYKSSNSGTTATSQLHEIATKKGVNVEFKFIEPYNFKFKSSMRAWAKTDIMSSYKVHLKVASYDFYGQADHPQKAKHIASNEALAYVEALPDI-----------------------------------PKAKTT------VVDGLLEGKNVIMALNEIAMTNGLCPEWNMVSDQGLPHQRTFTWSLKLGDHEVVGTGSSKKVAKTTAANQMLNIIPEEWKKAVLEMDGKKKKKANKRKSGSASNNPDNSNKTEPEEEAAHPVKKANLSSPENPSLDKVTTP-LKAEVPVKVEDNSTPLSATT---DIAQLPSNLP---------IFEQITSSNPISCLYEYCKKAKFDDPVFECVSENVVETWLKGQQTLKKTEYNMKLIVKDKTYYESGSNKKLAKNNLFVSIF 505
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BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. L. salmonis genes
Match: EMLSAG00000001345 (supercontig:LSalAtl2s:LSalAtl2s1228:15906:17054:-1 gene:EMLSAG00000001345 transcript:EMLSAT00000001345 description:"augustus_masked-LSalAtl2s1228-processed-gene-0.1")

HSP 1 Score: 51.6026 bits (122), Expect = 2.152e-7
Identity = 38/127 (29.92%), Postives = 59/127 (46.46%), Query Frame = 0 
Query:  337 VSSASTSSSDIQSDQSQISADATSPASQTTA-TTPTAVVHSVSEPS---ALLNRIAMSRNTPLVWEVVGESGPPHQKIFTLKCVLGEHQAMGTGSSKKLAKTLAASELIKTLPEDWREPSTKSKKRA 459
             SS  + S+  Q++ SQ      +P  Q     +P   +  + E        N  +  RN  + WE V E GPPH K+FT    +G+   + + +SKK AK  AA ++ + L     +   K+KKRA
Sbjct:   74 TSSQKSGSTPSQNEDSQKKVLEEAPNEQQQEDASPEKPIQEILEGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKL-----DKLPKAKKRA 195
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BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. SwissProt
Match: gi|1373045322|sp|Q9NUL3.2|STAU2_HUMAN (RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2)

HSP 1 Score: 130.183 bits (326), Expect = 3.646e-30
Identity = 95/300 (31.67%), Postives = 146/300 (48.67%), Query Frame = 0 
Query:  163 EEAESLPKLHYLAAHNHLLPQFQARSDNG-----AFQTTLILGTETYEGAGATAKAAQQSAAQRALAETKYPK------KTTMRVRPPGSTSTSELNELATKKGLQVEFRFLEPPNF-QYSAAMKQWKKEDMRAH------YRVQLTIGGNLFLGEADMPQQAKHNASSQAIPVIQVLPDIKVVAQQQALKNVSSASTSSSDIQSDQSQISADATSPASQTTATTPTAVVHSVSEPSALLNRIAMSRNTPLVWEVVGESGPPHQKIFTLKCVLGEHQAMGTGSSKKLAKTLAASELIKTL 444
            +E  ++  ++ LA  N + PQ++  ++ G      F   L LG +T+E  G++ K AQQ+ A +AL E+  PK      K+ +   P   T T ELN LA K+G    +R L+P  F  Y A        + R H      + VQLT+G N F GE    Q A+HNA+ +A+  +Q  P       +++ +N  S      D  +++S+IS                           L+  IA+ RN P+ +EV+ ESGPPH K F  +  +GE  A G G+SKKL+K  AA+ +++ L
Sbjct:    5 KEKTAMCLVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEP-----IPERSPQNGESGKDVDDDKDANKSEIS---------------------------LVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL 272
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BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. SwissProt
Match: gi|73919460|sp|Q68SB1.1|STAU2_RAT (RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2; Short=r-staufen protein)

HSP 1 Score: 127.872 bits (320), Expect = 2.059e-29
Identity = 91/292 (31.16%), Postives = 142/292 (48.63%), Query Frame = 0 
Query:  171 LHYLAAHNHLLPQFQARSDNG-----AFQTTLILGTETYEGAGATAKAAQQSAAQRALAETKYPK------KTTMRVRPPGSTSTSELNELATKKGLQVEFRFLEPP-------NFQYSAAMKQWKKEDMRAHYRVQLTIGGNLFLGEADMPQQAKHNASSQAIPVIQVLPDIKVVAQQQALKNVSSASTSSSDIQSDQSQISADATSPASQTTATTPTAVVHSVSEPSALLNRIAMSRNTPLVWEVVGESGPPHQKIFTLKCVLGEHQAMGTGSSKKLAKTLAASELIKTL 444
            ++ LA  + + PQ++  +++G      F   L LG +T+E  G++ K AQQ+ A +AL E+  PK      K+ +   P   T T ELN LA K+G    +R L+P        N+ +     Q     M   + VQLT+G N F GE    Q A+HNA+ +A+  +Q  P       +++ +N  S      D  +++S+IS                           L+  IA+ RN P+ +EV+ ESGPPH K F  +  +GE  A G G+SKKL+K  AA+ +++ L
Sbjct:   13 VNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEP-----IPEKSPQNGESGKEMDDDKDANKSEIS---------------------------LVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL 272
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BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. SwissProt
Match: gi|73919459|sp|Q8CJ67.1|STAU2_MOUSE (RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2)

HSP 1 Score: 127.487 bits (319), Expect = 2.580e-29
Identity = 91/292 (31.16%), Postives = 142/292 (48.63%), Query Frame = 0 
Query:  171 LHYLAAHNHLLPQFQARSDNG-----AFQTTLILGTETYEGAGATAKAAQQSAAQRALAETKYPK------KTTMRVRPPGSTSTSELNELATKKGLQVEFRFLEPP-------NFQYSAAMKQWKKEDMRAHYRVQLTIGGNLFLGEADMPQQAKHNASSQAIPVIQVLPDIKVVAQQQALKNVSSASTSSSDIQSDQSQISADATSPASQTTATTPTAVVHSVSEPSALLNRIAMSRNTPLVWEVVGESGPPHQKIFTLKCVLGEHQAMGTGSSKKLAKTLAASELIKTL 444
            ++ LA  + + PQ++  +++G      F   L LG +T+E  G++ K AQQ+ A +AL E+  PK      K+ +   P   T T ELN LA K+G    +R L+P        N+ +     Q     M   + VQLT+G N F GE    Q A+HNA+ +A+  +Q  P       +++ +N  S      D  +++S+IS                           L+  IA+ RN P+ +EV+ ESGPPH K F  +  +GE  A G G+SKKL+K  AA+ +++ L
Sbjct:   13 VNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEP-----IPEKSPQNGESGKEMDDDKDANKSEIS---------------------------LVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL 272
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BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. SwissProt
Match: gi|73919457|sp|Q7ZW47.2|STAU2_DANRE (RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2)

HSP 1 Score: 114.775 bits (286), Expect = 4.075e-25
Identity = 95/294 (32.31%), Postives = 142/294 (48.30%), Query Frame = 0 
Query:  171 LHYLAAHNHLLPQFQARSDNG-----AFQTTLILGTETYEGAGATAKAAQQSAAQRALAETKYPKKTTMRVRP-----PGS-TSTSELNELATKKGLQVEFRFLEP---PNFQYSAAMKQWKKEDMRAHY------RVQLTIGGNLFLGEADMPQQAKHNASSQAIPVIQVLPDIKVVAQQQALKNVSSASTSSSDIQSDQSQISADATSPASQTTATTPTAVVHSVSEPSALLNRIAMSRNTPLVWEVVGESGPPHQKIFTLKCVLGEHQAMGTGSSKKLAKTLAASELIKTL 444
            ++ LA  N + PQ++  ++ G      F   L LG + +E  G++ K AQ S A +ALAE+  P+      +      PGS T T ELN LA K+G    +R L+P   PN++ +   +     + R HY       VQLT+G N F+GE    Q A+HNA+ +A+               QALKN           Q  + +   +  S AS++  +              L+  IA+ RN P+ +EV+ ESGPPH K F  +  +GE  A G G+SKKL+K  AA  +++ L
Sbjct:   13 VNELARFNRIQPQYKLLNEKGPAHAKIFTVQLCLGNQVWESEGSSIKKAQHSTATKALAESSLPRPPPRSPKADSNSNPGSITPTVELNGLAMKRGEPAIYRPLDPKPIPNYRANYNFRGMF--NQRYHYPVPKVFYVQLTVGNNEFIGEGRTRQAARHNAAMKAL---------------QALKN---EPIPERPPQCSEEKKETEENSDASKSEIS--------------LVYEIALKRNLPVNFEVLKESGPPHMKSFLTRVTVGEFSAEGEGNSKKLSKKRAALSILQEL 272
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BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. SwissProt
Match: gi|73919461|sp|Q5M7M7.1|STAU2_XENTR (RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.105e-18
Identity = 84/294 (28.57%), Postives = 128/294 (43.54%), Query Frame = 0 
Query:  171 LHYLAAHNHLLPQFQARSDNG-----AFQTTLILGTETYEGAGATAKAAQQSAAQRALAETKYPK------KTTMRVRPP-----GSTSTS-------------ELNELATKKGLQVEFRFLEPP-------NFQYSAAMKQWKKEDMRAHYRVQLTIGGNLFLGEADMPQQAKHNASSQAIPVIQVLPDIKVVAQQQALKNVSSASTSSSDIQSDQSQISADATSPASQTTATTPTAVVHSVSEPSALLNRIAMSRNTPLVWEVVGESGPPHQKIFTLKCVLGEHQAMGTGSS 428
            ++ LA  N + PQ++   + G      F   L LG +T++    + K AQ +AA  AL+ET  PK      K  M   P      G+T TS             ELN LA ++G    +R L+P        N+ Y     Q     M   + VQLT+G + F GE    Q A+HNA+ +A+  ++  P    + ++ +L N  +      D  +++S+IS                           L+  I++ RN  L +EV+ ESGPPH K F  +  +GE  A G G+S
Sbjct:   13 VNELARFNRIQPQYKLLDERGPAHSKLFTVQLTLGEQTWQAESTSIKKAQHAAASLALSETTLPKPAARQTKNHMNNNPEAAELHGNTFTSSRHSAKGSITPTVELNGLAMRRGEPAIYRSLDPKPLPNQRANYNYRGMYHQRYLCPMLKTFYVQLTVGNSEFYGEGKTRQAARHNAALKALHALRNEP----IPERSSL-NGEANRGPEEDKDANKSEIS---------------------------LVFEISLKRNLSLSFEVIKESGPPHMKSFVTRVTVGEFTAEGEGNS 274
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BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. SwissProt
Match: gi|71153175|sp|P25159.2|STAU_DROME (RecName: Full=Maternal effect protein staufen)

HSP 1 Score: 82.0333 bits (201), Expect = 1.454e-14
Identity = 84/322 (26.09%), Postives = 141/322 (43.79%), Query Frame = 0 
Query:  287 RVQLTIGGNLFLGEADMPQQAKHNASSQAIPVIQVLPDIKVVAQQQALKNVSSASTSSSDIQSDQSQISADATSPASQTTATTPTAVVHSVSEPSALLNRIAMSRNTPLVWEVVGESGPPHQKIFTLKCVLGEHQAMGTGSSKKLAKTLAASELIKTLPEDWREPSTKSKKRAKKRAAQPDSTQRVAVPGAESEPPSASEDTSTPAPSAVLIGPVAPS----PNKIAKKEPTEGKRIEEVIQAANPISALHEFAKRAKLPDPIFECVSENVLETWESKGKIFRKTEYTMRLDFKEKQYLASGTTKKQAKAEVAAAAWNVIRA 604
            ++ L +G   F+G     QQAKH+A+++A+   QVL    + A ++AL++               S    D  SP SQ                   ++ I + RN  + ++V+ E GP H K F   C++G     G G+ KK++K  AA +++  L      P T +K+   KR        +V  PG      +A+ + S      V+ G   P+    P +  +  P + K I ++  A NPI+ L +  +  K  +PIFE +++N  ET        R+ E+ M +         +G +KK AK   A A + ++ A
Sbjct:  523 KITLFVGKQKFVGIGRTLQQAKHDAAARAL---QVLKTQAISASEEALED---------------SMDEGDKKSPISQ-------------------VHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSIVTEGEGNGKKVSKKRAAEKMLVEL--QKLPPLTPTKQTPLKRI-------KVKTPGKSG---AAAREGS------VVSGTDGPTQTGKPERRKRLNPPKDKLI-DMDDADNPITKLIQLQQTRKEKEPIFELIAKNGNETA-------RRREFVMEVSASGSTARGTGNSKKLAKRNAAQALFELLEA 781
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BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. SwissProt
Match: gi|122010191|sp|Q3L1C9.1|STAUH_APLCA (RecName: Full=Double-stranded RNA-binding protein Staufen homolog)

HSP 1 Score: 77.0258 bits (188), Expect = 3.871e-13
Identity = 121/482 (25.10%), Postives = 190/482 (39.42%), Query Frame = 0 
Query:  176 AHNHLLPQFQARSDNGAFQTTLILGTETYEGAGATAKAAQQSAAQRALAETKYPK---------KTTMRVRPPGS-TSTSELNELATKKGLQVEFRFLEP--------PNFQYSAAMKQWKKEDMRA-----------------HY-------RVQLTIGGNLFLGEADMPQQAKHNASSQAIPVIQVLPDIKVVAQQQALKNVSSASTSSSDIQSDQSQISADATSPASQTTATTPTAVVHSVSEPSALLNRIAMSRNTPLVWEVVGESGPPHQKIFTLKCVLGEHQAMGTGSSKKLAKTLAASELIKTLPEDWREPSTKSKKRAKKRAAQPDSTQRVAVPGAESEPPSASEDTSTPAPSAVLIGPVAPSPNKIAKKEPTEGKRIEEVIQAANPISALHEFAKRAKLPDPIFECVSENVLETWESKGKIFRKTEYTMRLDFKEKQYLASGTTKKQAKAEVAAAAWNVIRAELSHLSPAPIP 615
            +H + L   Q  +    F   L LG E Y  +G + K AQ +AA  AL ETK P             +     G+ T T ELN LA K+G    ++ +EP        PN  +     Q   + MRA                 HY        V L +G   F+G+    Q A+HNA+ +A+ +++ LP             V S    S + Q+D++  + DA       +  +  ++VH           IA+ RN  + +EV+ E+GPPH K F  +C + +    G G+SKK +K  AA  +++ L                                    PP A+   + P P + +      + N I K E  + K         NPIS L +  +  K  +P++  V+E  L          R+ E+ ++++ ++K    SG  KK AK   A A   +    L +  P+P P
Sbjct:  359 SHQYTLVDEQGPAHKKTFYVKLKLGDEEYSASGESIKKAQHAAAAIALVETKCPHPPPKPARLGCCDLEKSADGNITPTVELNALAMKRGEPALYKSIEPQQPPYYHQPNMDFRGLYNQRYHQYMRASRDPRYRGNGVLWPLRYHYPRMNRAFYVSLRVGHREFIGDGPTRQAARHNAAQKALRILKNLP-------------VQSGEKKSEE-QADEA--AEDACEEDVDDSLKSEISLVH----------EIALRRNMVVQFEVIRETGPPHMKNFLTRCTVADMVTEGEGNSKKTSKKKAAELMLEEL---------------------------------RKLPPLAT--PAFPRPKSKIQMNKKKNRNLI-KSELQQQKADPNYGVGINPISRLIQIMQAQKKKEPVYTLVTERGLP---------RRREFIVQVEVEDKTCPGSGPNKKLAKRAAAEAMLQL----LGYTKPSPQP 765
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BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. SwissProt
Match: gi|9789804|sp|Q9Z108.1|STAU1_MOUSE (RecName: Full=Double-stranded RNA-binding protein Staufen homolog 1)

HSP 1 Score: 63.929 bits (154), Expect = 3.109e-9
Identity = 76/330 (23.03%), Postives = 124/330 (37.58%), Query Frame = 0 
Query:  286 YRVQLTIGGNLFLGEADMPQQAKHNASSQAIPVIQVLP---DIKVVAQQQALKNVSSASTSSSDIQSDQSQISADATSPASQTTATTPTAVVHSVSEPSALLNRIAMSRNTPLVWEVVGESGPPHQKIFTLKCVLGEHQAMGTGSSKKLAKTLAASELIKTLPEDWREPSTKSKKRAKKRAAQPDSTQRVAVPGAESEPPSASEDTSTPAPSAVLIGPVAPSPNKIAKKEPTEGKRIEEVIQAANPISALHEFAKRAKLPDPIFECVSENVLETWESKGKIFRKTEYTMRLDFKEKQYLASGTTKKQAKAEVAAAAWNVIRAELSHLSPA 612
            Y+V+L++GG  F G+  M    KH+A ++A+  +Q  P    ++V  ++   +N+            ++S+IS                            +  IA+ RN P+ +EV  ESGPPH K F  +  +GE    G G SKK++K  AA  +++ L    R P                                       P P+   + P      +I KK     K   +  Q  NPIS L +  +  K  +P +  ++E  L          R+ E+ M++          GT KK AK   A     ++  ++    PA
Sbjct:   39 YQVELSVGGQQFNGKGKMRPPVKHDAPARALRTLQSEPLPERLEVNGREAEEENL------------NKSEISQ---------------------------VFEIALKRNLPVNFEVARESGPPHMKNFVTRVSVGEFVGEGEGKSKKISKKNAARAVLEQL---RRLP---------------------------------------PLPAVERVKP------RIKKKSQPTCKTAPDYGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLP---------RRREFVMQVKVGHHTAEGVGTNKKVAKRNAAENMLEILGFKVPQAQPA 272
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BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. nr
Match: gi|1325330926|ref|XP_023347323.1| (double-stranded RNA-binding protein Staufen homolog 2-like [Eurytemora affinis])

HSP 1 Score: 167.162 bits (422), Expect = 6.769e-42
Identity = 101/264 (38.26%), Postives = 146/264 (55.30%), Query Frame = 0 
Query:  166 ESLPKLHYLAAHNHLLPQFQARSDNGA-------FQTTLILGTETYEGAGATAKAAQQSAAQRALAETKY----PKKTTM--RVRPPGSTSTSELNELATKKGLQVEFRFLEPPNFQYSAAMKQWKKEDMRAHYRVQLTIGGNLFLGEADMPQQAKHNASSQAIPVIQVLPD----IKVVAQQQALKNVSSASTSSSDIQSDQSQISADATSPASQTTATTPTAVVHSVSEPSALLNRIAMSRNTPLVWEVVGESGPPHQKIFT 412
            ++L KLH LA  N L+ +F+   D  A       +   L +GTE YEG G   K A+Q+AA +AL+ TKY     KK TM    +  G T+TSEL+E+A KKG+ V+F+FLEP NF++  +M+ W K+DM  +YRVQL + G  F G+A++PQQAKHNAS+QA+P+++ + D     KV+A+   L                          P  +   + P  V   V   + LLN IAM+ N    W ++ E+GP H +I+T
Sbjct:  103 KALAKLHELAFTNKLVERFEKVQDPEAGNPQMTEYVVKLFIGTEEYEGRGTNLKCARQNAALKALSNTKYQTAKEKKLTMFNTAKRIGVTATSELHEIAAKKGVHVDFKFLEPYNFEFKHSMRMWSKKDMLGNYRVQLNVAGYEFYGQAELPQQAKHNASTQALPIVRQMADPSGAGKVIAKPGGL--------------------------PIPEEEESVP--VSGDVKNTTMLLNEIAMTNNCTPEWTLLSETGPAHARIYT 338
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BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. nr
Match: gi|724837493|ref|XP_010364311.1| (PREDICTED: double-stranded RNA-binding protein Staufen homolog 2, partial [Rhinopithecus roxellana] >gi|795140999|ref|XP_011792595.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2, partial [Colobus angolensis palliatus])

HSP 1 Score: 130.183 bits (326), Expect = 9.188e-29
Identity = 96/300 (32.00%), Postives = 146/300 (48.67%), Query Frame = 0 
Query:  163 EEAESLPKLHYLAAHNHLLPQFQARSDNG-----AFQTTLILGTETYEGAGATAKAAQQSAAQRALAETKYPK------KTTMRVRPPGSTSTSELNELATKKGLQVEFRFLEPPNF-QYSAAMKQWKKEDMRAH------YRVQLTIGGNLFLGEADMPQQAKHNASSQAIPVIQVLPDIKVVAQQQALKNVSSASTSSSDIQSDQSQISADATSPASQTTATTPTAVVHSVSEPSALLNRIAMSRNTPLVWEVVGESGPPHQKIFTLKCVLGEHQAMGTGSSKKLAKTLAASELIKTL 444
            +E  ++  ++ LA  N + PQ++  ++ G      F   L LG +T+E  G++ K AQQ+ A +AL E+  PK      K+ +   P   T T ELN LA K+G    +R L+P  F  Y A        + R H      + VQLT+G N F GE    Q A+HNA+ +A+  +Q  P       +++ +N  S      D  +++S+IS                           L+  IA+ RN P+ +EVV ESGPPH K F  +  +GE  A G G+SKKL+K  AA+ +++ L
Sbjct:    5 KEKTAMCLVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEP-----IPERSPQNGESGKDMDDDKDANKSEIS---------------------------LVFEIALKRNMPVSFEVVKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL 272
[Close]
BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. nr
Match: gi|1191872690|ref|XP_020944887.1| (double-stranded RNA-binding protein Staufen homolog 2 isoform X11 [Sus scrofa])

HSP 1 Score: 132.109 bits (331), Expect = 1.098e-28
Identity = 97/292 (33.22%), Postives = 141/292 (48.29%), Query Frame = 0 
Query:  171 LHYLAAHNHLLPQFQARSDNG-----AFQTTLILGTETYEGAGATAKAAQQSAAQRALAETKYPK------KTTMRVRPPGSTSTSELNELATKKGLQVEFRFLEPPNF-QYSAAMKQWKKEDMRAH------YRVQLTIGGNLFLGEADMPQQAKHNASSQAIPVIQVLPDIKVVAQQQALKNVSSASTSSSDIQSDQSQISADATSPASQTTATTPTAVVHSVSEPSALLNRIAMSRNTPLVWEVVGESGPPHQKIFTLKCVLGEHQAMGTGSSKKLAKTLAASELIKTL 444
            ++ LA  N + PQ++   + G      F   L LG +T+E  G++ K AQQ+ A +ALAE+  PK      K+ +   P   T T ELN LA K+G    +R L+P  F  Y A        + R H      + VQLT+G N F GE    Q A+HNA+ +A+  +Q  P  +  AQ     N  S      D  +++S+IS                           L+  IA+ RN P+ +EV+ ESGPPH K F  +  +GE  A G G+SKKL+K  AA+ +++ L
Sbjct:   13 VNELARFNRVQPQYKLLKERGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALAESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPIPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSAQ-----NGESGKEMDDDKDANKSEIS---------------------------LVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL 272
[Close]
BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. nr
Match: gi|918610226|ref|XP_013373617.1| (PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform X6 [Chinchilla lanigera])

HSP 1 Score: 132.109 bits (331), Expect = 1.300e-28
Identity = 97/292 (33.22%), Postives = 142/292 (48.63%), Query Frame = 0 
Query:  171 LHYLAAHNHLLPQFQARSDNG-----AFQTTLILGTETYEGAGATAKAAQQSAAQRALAETKYPK------KTTMRVRPPGSTSTSELNELATKKGLQVEFRFLEPPNF-QYSAAMKQWKKEDMRAH------YRVQLTIGGNLFLGEADMPQQAKHNASSQAIPVIQVLPDIKVVAQQQALKNVSSASTSSSDIQSDQSQISADATSPASQTTATTPTAVVHSVSEPSALLNRIAMSRNTPLVWEVVGESGPPHQKIFTLKCVLGEHQAMGTGSSKKLAKTLAASELIKTL 444
            ++ LA  N + PQ++  S++G      F   L LG +T+E  G++ K AQQ+ A +AL E+  PK      K+ +   P   T T ELN LA K+G    +R L+P  F  Y A        + R H      + VQLT+G N F GE    Q A+HNA+ +A+  +Q  P  +  AQ     N  S      D  +++S+IS                           L+  IA+ RN P+ +EV+ ESGPPH K F  +  +GE  A G G+SKKL+K  AA+ +++ L
Sbjct:   13 VNELARFNSIQPQYKLLSESGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSAQ-----NGESGKEMDDDKDANKSEIS---------------------------LVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL 272
[Close]
BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. nr
Match: gi|440895633|gb|ELR47776.1| (Double-stranded RNA-binding protein Staufen-like protein 2, partial [Bos mutus])

HSP 1 Score: 132.109 bits (331), Expect = 1.364e-28
Identity = 127/446 (28.48%), Postives = 184/446 (41.26%), Query Frame = 0 
Query:  171 LHYLAAHNHLLPQFQARSDNG-----AFQTTLILGTETYEGAGATAKAAQQSAAQRALAETKYPK------KTTMRVRPPGSTSTSELNELATKKGLQVEFRFLEPPNF-QYSAAMKQWKKEDMRAH------YRVQLTIGGNLFLGEADMPQQAKHNASSQAIPVIQVLPDIKVVAQQQALKNVSSASTSSSDIQSDQSQISADATSPASQTTATTPTAVVHSVSEPSALLNRIAMSRNTPLVWEVVGESGPPHQKIFTLKCVLGEHQAMGTGSSKKLAKTLAASELIKTLPEDWREPSTKSKKRAKKRAAQPDSTQRVAVPGAESEPPSASEDTSTPAPSAVLIGPVAPSPNKIAKKEP-TEGKRIEEVIQAANPISALHEFAKRAKLPDPIFECVSENVLETWESKGKIFRKTEYTMRLDFKEKQYLASGTTKKQAKAEVAAA 597
            ++ LA  N + PQ++   + G      F   L LG +T+E  G++ K AQQ+ A +AL E+  PK      K+ +   P   T T ELN LA K+G    +R L+P  F  Y A        + R H      + VQLT+G N F GE    Q A+HNA+ +A+  +Q  P  +  AQ     N  S      D  +++S+IS                           L+  IA+ RN P+ +EV+ ESGPPH K F  +  +GE  A G G+SKKL+K  AA+ +++ L                                 +  PP                 PV   P    KK P T  K   E  Q  NPIS L +  +  K  +P +  +SE  ++         R+ E+ M +    +    +G  KK AK   A A
Sbjct:   13 VNELARFNRVQPQYKLLKERGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSAQ-----NCESGKEMDDDKDANKSEIS---------------------------LVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL---------------------------------KKLPPL----------------PVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSERGMQ---------RRREFVMSVRVGNEVATGTGPNKKIAKKNAAEA 368
[Close]
BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. nr
Match: gi|918610224|ref|XP_013373616.1| (PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform X5 [Chinchilla lanigera])

HSP 1 Score: 132.109 bits (331), Expect = 1.422e-28
Identity = 97/292 (33.22%), Postives = 142/292 (48.63%), Query Frame = 0 
Query:  171 LHYLAAHNHLLPQFQARSDNG-----AFQTTLILGTETYEGAGATAKAAQQSAAQRALAETKYPK------KTTMRVRPPGSTSTSELNELATKKGLQVEFRFLEPPNF-QYSAAMKQWKKEDMRAH------YRVQLTIGGNLFLGEADMPQQAKHNASSQAIPVIQVLPDIKVVAQQQALKNVSSASTSSSDIQSDQSQISADATSPASQTTATTPTAVVHSVSEPSALLNRIAMSRNTPLVWEVVGESGPPHQKIFTLKCVLGEHQAMGTGSSKKLAKTLAASELIKTL 444
            ++ LA  N + PQ++  S++G      F   L LG +T+E  G++ K AQQ+ A +AL E+  PK      K+ +   P   T T ELN LA K+G    +R L+P  F  Y A        + R H      + VQLT+G N F GE    Q A+HNA+ +A+  +Q  P  +  AQ     N  S      D  +++S+IS                           L+  IA+ RN P+ +EV+ ESGPPH K F  +  +GE  A G G+SKKL+K  AA+ +++ L
Sbjct:   13 VNELARFNSIQPQYKLLSESGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSAQ-----NGESGKEMDDDKDANKSEIS---------------------------LVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL 272
[Close]
BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. nr
Match: gi|1187621172|ref|XP_020763573.1| (double-stranded RNA-binding protein Staufen homolog 2 [Odocoileus virginianus texanus])

HSP 1 Score: 125.946 bits (315), Expect = 1.586e-28
Identity = 90/265 (33.96%), Postives = 128/265 (48.30%), Query Frame = 0 
Query:  193 FQTTLILGTETYEGAGATAKAAQQSAAQRALAETKYPK------KTTMRVRPPGSTSTSELNELATKKGLQVEFRFLEPPNF-QYSAAMKQWKKEDMRAH------YRVQLTIGGNLFLGEADMPQQAKHNASSQAIPVIQVLPDIKVVAQQQALKNVSSASTSSSDIQSDQSQISADATSPASQTTATTPTAVVHSVSEPSALLNRIAMSRNTPLVWEVVGESGPPHQKIFTLKCVLGEHQAMGTGSSKKLAKTLAASELIKTL 444
            F   L LG +T+E  G++ K AQQ+ A +AL E+  PK      K+ +   P   T T ELN LA K+G    +R L+P  F  Y A        + R H      + VQLT+G N F GE    Q A+HNA+ +A+  +Q  P  +  AQ     N  S      D  +++S+IS                           L+  IA+ RN P+ +EV+ ESGPPH K F  +  +GE  A G G+SKKL+K  AA+ +++ L
Sbjct:    2 FSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSAQ-----NCESGKEMDDDKDANKSEIS---------------------------LVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL 234
[Close]
BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. nr
Match: gi|1191872684|ref|XP_020944884.1| (double-stranded RNA-binding protein Staufen homolog 2 isoform X10 [Sus scrofa] >gi|1191872686|ref|XP_020944885.1| double-stranded RNA-binding protein Staufen homolog 2 isoform X10 [Sus scrofa] >gi|1191872688|ref|XP_020944886.1| double-stranded RNA-binding protein Staufen homolog 2 isoform X10 [Sus scrofa])

HSP 1 Score: 131.724 bits (330), Expect = 2.040e-28
Identity = 97/292 (33.22%), Postives = 141/292 (48.29%), Query Frame = 0 
Query:  171 LHYLAAHNHLLPQFQARSDNG-----AFQTTLILGTETYEGAGATAKAAQQSAAQRALAETKYPK------KTTMRVRPPGSTSTSELNELATKKGLQVEFRFLEPPNF-QYSAAMKQWKKEDMRAH------YRVQLTIGGNLFLGEADMPQQAKHNASSQAIPVIQVLPDIKVVAQQQALKNVSSASTSSSDIQSDQSQISADATSPASQTTATTPTAVVHSVSEPSALLNRIAMSRNTPLVWEVVGESGPPHQKIFTLKCVLGEHQAMGTGSSKKLAKTLAASELIKTL 444
            ++ LA  N + PQ++   + G      F   L LG +T+E  G++ K AQQ+ A +ALAE+  PK      K+ +   P   T T ELN LA K+G    +R L+P  F  Y A        + R H      + VQLT+G N F GE    Q A+HNA+ +A+  +Q  P  +  AQ     N  S      D  +++S+IS                           L+  IA+ RN P+ +EV+ ESGPPH K F  +  +GE  A G G+SKKL+K  AA+ +++ L
Sbjct:   32 VNELARFNRVQPQYKLLKERGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALAESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPIPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSAQ-----NGESGKEMDDDKDANKSEIS---------------------------LVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL 291
[Close]
BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. nr
Match: gi|918610222|ref|XP_013373615.1| (PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform X4 [Chinchilla lanigera])

HSP 1 Score: 131.724 bits (330), Expect = 2.162e-28
Identity = 97/292 (33.22%), Postives = 142/292 (48.63%), Query Frame = 0 
Query:  171 LHYLAAHNHLLPQFQARSDNG-----AFQTTLILGTETYEGAGATAKAAQQSAAQRALAETKYPK------KTTMRVRPPGSTSTSELNELATKKGLQVEFRFLEPPNF-QYSAAMKQWKKEDMRAH------YRVQLTIGGNLFLGEADMPQQAKHNASSQAIPVIQVLPDIKVVAQQQALKNVSSASTSSSDIQSDQSQISADATSPASQTTATTPTAVVHSVSEPSALLNRIAMSRNTPLVWEVVGESGPPHQKIFTLKCVLGEHQAMGTGSSKKLAKTLAASELIKTL 444
            ++ LA  N + PQ++  S++G      F   L LG +T+E  G++ K AQQ+ A +AL E+  PK      K+ +   P   T T ELN LA K+G    +R L+P  F  Y A        + R H      + VQLT+G N F GE    Q A+HNA+ +A+  +Q  P  +  AQ     N  S      D  +++S+IS                           L+  IA+ RN P+ +EV+ ESGPPH K F  +  +GE  A G G+SKKL+K  AA+ +++ L
Sbjct:   13 VNELARFNSIQPQYKLLSESGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSAQ-----NGESGKEMDDDKDANKSEIS---------------------------LVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL 272
[Close]
BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. nr
Match: gi|918610215|ref|XP_013373612.1| (PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform X2 [Chinchilla lanigera])

HSP 1 Score: 132.109 bits (331), Expect = 2.454e-28
Identity = 97/292 (33.22%), Postives = 142/292 (48.63%), Query Frame = 0 
Query:  171 LHYLAAHNHLLPQFQARSDNG-----AFQTTLILGTETYEGAGATAKAAQQSAAQRALAETKYPK------KTTMRVRPPGSTSTSELNELATKKGLQVEFRFLEPPNF-QYSAAMKQWKKEDMRAH------YRVQLTIGGNLFLGEADMPQQAKHNASSQAIPVIQVLPDIKVVAQQQALKNVSSASTSSSDIQSDQSQISADATSPASQTTATTPTAVVHSVSEPSALLNRIAMSRNTPLVWEVVGESGPPHQKIFTLKCVLGEHQAMGTGSSKKLAKTLAASELIKTL 444
            ++ LA  N + PQ++  S++G      F   L LG +T+E  G++ K AQQ+ A +AL E+  PK      K+ +   P   T T ELN LA K+G    +R L+P  F  Y A        + R H      + VQLT+G N F GE    Q A+HNA+ +A+  +Q  P  +  AQ     N  S      D  +++S+IS                           L+  IA+ RN P+ +EV+ ESGPPH K F  +  +GE  A G G+SKKL+K  AA+ +++ L
Sbjct:   13 VNELARFNSIQPQYKLLSESGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSAQ-----NGESGKEMDDDKDANKSEIS---------------------------LVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL 272
The following BLAST results are available for this feature:
BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAG000000024316.645e-7533.69supercontig:LSalAtl2s:LSalAtl2s1464:38656:42603:-1... [more]
EMLSAG000000013452.152e-729.92supercontig:LSalAtl2s:LSalAtl2s1228:15906:17054:-1... [more]
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BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
gi|1373045322|sp|Q9NUL3.2|STAU2_HUMAN3.646e-3031.67RecName: Full=Double-stranded RNA-binding protein ... [more]
gi|73919460|sp|Q68SB1.1|STAU2_RAT2.059e-2931.16RecName: Full=Double-stranded RNA-binding protein ... [more]
gi|73919459|sp|Q8CJ67.1|STAU2_MOUSE2.580e-2931.16RecName: Full=Double-stranded RNA-binding protein ... [more]
gi|73919457|sp|Q7ZW47.2|STAU2_DANRE4.075e-2532.31RecName: Full=Double-stranded RNA-binding protein ... [more]
gi|73919461|sp|Q5M7M7.1|STAU2_XENTR1.105e-1828.57RecName: Full=Double-stranded RNA-binding protein ... [more]
gi|71153175|sp|P25159.2|STAU_DROME1.454e-1426.09RecName: Full=Maternal effect protein staufen[more]
gi|122010191|sp|Q3L1C9.1|STAUH_APLCA3.871e-1325.10RecName: Full=Double-stranded RNA-binding protein ... [more]
gi|9789804|sp|Q9Z108.1|STAU1_MOUSE3.109e-923.03RecName: Full=Double-stranded RNA-binding protein ... [more]
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BLAST of double-stranded rna-binding protein staufen homolog 2 isoform x7 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1325330926|ref|XP_023347323.1|6.769e-4238.26double-stranded RNA-binding protein Staufen homolo... [more]
gi|724837493|ref|XP_010364311.1|9.188e-2932.00PREDICTED: double-stranded RNA-binding protein Sta... [more]
gi|1191872690|ref|XP_020944887.1|1.098e-2833.22double-stranded RNA-binding protein Staufen homolo... [more]
gi|918610226|ref|XP_013373617.1|1.300e-2833.22PREDICTED: double-stranded RNA-binding protein Sta... [more]
gi|440895633|gb|ELR47776.1|1.364e-2828.48Double-stranded RNA-binding protein Staufen-like p... [more]
gi|918610224|ref|XP_013373616.1|1.422e-2833.22PREDICTED: double-stranded RNA-binding protein Sta... [more]
gi|1187621172|ref|XP_020763573.1|1.586e-2833.96double-stranded RNA-binding protein Staufen homolo... [more]
gi|1191872684|ref|XP_020944884.1|2.040e-2833.22double-stranded RNA-binding protein Staufen homolo... [more]
gi|918610222|ref|XP_013373615.1|2.162e-2833.22PREDICTED: double-stranded RNA-binding protein Sta... [more]
gi|918610215|ref|XP_013373612.1|2.454e-2833.22PREDICTED: double-stranded RNA-binding protein Sta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold2236_size18378supercontigscaffold2236_size18378:8996..13340 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold2236_size18378-snap-gene-0.8-mRNA-1maker-scaffold2236_size18378-snap-gene-0.8-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold2236_size18378:8996..13340-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold2236_size18378-snap-gene-0.8 ID=maker-scaffold2236_size18378-snap-gene-0.8|Name=double-stranded rna-binding protein staufen homolog 2 isoform x7|organism=Tigriopus kingsejongensis|type=gene|length=4345bp|location=Sequence derived from alignment at scaffold2236_size18378:8996..13340- (Tigriopus kingsejongensis)
ATGCAAGGTTATCCTCCACCCCGCTACCAGGCCTACACGCCGCACACCTT
TGCCCCTCGGTCTTTGGCCGCTCAGCCGCCTTATGGGCCGCCTACGGCCT
ACTATGGACCTTGGGGTCCTCCTCACGCACCGGGAGGGGGCTACCGGCCC
CCCCTGGCGCCTCCCAGCGCCGCCCAGTGGGATCCACCCGCCGGTTACGC
CGTCTACGACTACGGTCGGGCGGCGGGTCAACCGCCTCCACCCACCGAAG
GCGCCTGGAATCAGCAGCCCCGAGTCGAGAGTCCGCGGATGCGCTCGAGA
GAGCCTATGGGTCGACTCCCAGGTCCCGTTCCCCCTCCGCCGCCGCCGGT
CTTGCCCCCCACAGGACGGTGTGCACCTCCTCGGGCCCCCGCCGGCTGGT
CGCCTCGACCCAGGTACCCGACCAAACTCTTCGTTCCGGCCGCCACCGAT
GAGCGGGCTCCGGGCTCGGGTAGCGGCGGTTGGGATGAGGAGGCGGAATC
CCTACCCAAGCTCCACTATCTGGCCGCTCACAATCACTTGTTGCCGCAGT
TCCAGGCCCGGTCTGACAATGGTGCGTTTCAAACGACGCTCATTCTGGGT
ACCGAGACCTACGAGGGCGCCGGTGCCACGGCCAAGGCGGCCCAACAGAG
TGCGGCCCAGCGGGCCCTGGCCGAGACGAAGTATCCGAAGAAGACAACCA
TGCGCGTGCGTCCACCGGGGTCGACTTCCACCTCGGAGCTCAATGAACTG
GCCACCAAGAAGGGTTTGCAAGTGGAATTCAGATTCTTGGAACCCCCCAA
CTTCCAGTACAGTGCCGCCATGAAGCAATGGAAGAAGGAGGACATGAGGG
CTCACTATCGAGTCCAGCTCACCATTGGAGGGAATCTGTTCTTGGGTGAA
GCCGACATGCCACAGCAGGCCAAGCACAACGCCTCCTCCCAGGCCATTCC
CGTGATCCAAGTCCTGCCCGACATCAAAGTGGTGGCTCAACAGCAAGCCC
TCAAGAATGTCAGCAGCGCATCCACCTCGTCTAGCGATATCCAGTCTGAT
CAGTCCCAGATCAGCGCGGATGCGACAAGTCCGGCGAGTCAGACCACGGC
CACCACCCCGACTGCGGTGGTCCATTCAGTGAGCGAGCCTTCGGCTCTGC
TCAATCGAATTGCCATGTCCAGGAACACGCCCTTGGTGTGGGAAGTGGTG
GGCGAGAGCGGTCCGCCTCATCAAAAGATTTTCACCCTAAAGTGCGTTTT
GGGCGAGCACCAGGCCATGGGCACGGGCAGTAGCAAAAAGCTGGCCAAAA
CCCTGGCGGCTTCGGAATTGATCAAGACGCTCCCCGAGGATTGGCGAGAA
CCGTCGACCAAGTCAAAGAAAAGGGCCAAGAAAAGAGCCGCCCAGCCGGA
CTCGACTCAAAGAGTAGCGGTCCCAGGGGCCGAGAGTGAACCGCCTAGTG
CTAGTGAGGACACATCCACCCCTGCGCCCAGCGCTGTATTAATAGGACCG
GTCGCACCCTCGCCCAATAAAATTGCGAAAAAAGAACCCACCGAGGGGAA
ACGAATTGAAGAAGTGATTCAAGCCGCCAATCCTATCTCGGCCCTCCACG
AATTCGCCAAGCGAGGTAAGATTCGGGAGAGTGCTCCACCACTGTATGGA
GGCATACTACTATCCTTTACTTTCCATTTCAGCCAAACTTCCGGATCCAA
TTTTCGAATGCGTCTCAGAGAACGTTTTGGAAACCTGGGAGAGCAAGGGC
AAAATCTTTCGAAAAACCGAGTACACCATGAGATTGGATTTCAAGGAAAA
GCAATATCTGGCCTCCGGCACTACCAAAAAGCAAGCCAAAGCCGAGGTCG
CCGCAGCAGCTTGGAATGTGATTCGGGCGGAAGTATTTGTGTGAACAATT
GTCTTGGAGATTCGATGCTTGGGTCAAAGATGATTGTTTCAGAAGAAAGA
GGAAAGTTCAATCTATTTGATTTTCCGAGTTTGTAACCTGTTCGCAAGCA
TATAAGTTGTCGCAAACGAAGTTAGTCAAATAAATGTATCTGATATACGT
ATGTATTGTGGGGAGATTTTTGTTCTGAGCAGAACTCTGACATGGTTTTT
GTCCGCCATGGGTTGTGTTCTTGCCCTGCTAACGCACTTCACTAATTAAA
TTACCTTGATTTGTGGAGCGACTTTTCTCATTTGCAACGACAAATGCACT
TAAGTTTGATTTGGCCTTACGATCTGTAAAGTTCATTCGACCTCAGCATT
ATCGTACACCATGGAAATCATGTTTTGCTTCACAGTATTTGCTTGCTTAA
AAATGCGGCGTTTTTTCGAATAAGCAGCCGGATAATATGTAAATAACCGG
ATTCGAATGAAATCAGCAAATAACCCGCCCAAAACGATAGAATGAAAACG
GGTTTCCTTTTTTTGGTCCATGCATCGCTAGTGATCGTGCTCCATTTCAA
AATTGAGCTTGTTAGACTGGAAAAGGGGATTCTGGAAGATAAATAAACCA
ATATCTTCCACGGCTTTAAAAAAAAACCACCAATATAGTAATTCCATATT
AGTGAGCGAATGTGAGCTTGAACGAGGACTGATTTTGGGTTCAGAAATCC
ACAAGGTCACGGTATTCTACTCAGCAGGGTAGATTGGCTGAACGTAAGGT
GTTGGGACCGTCACTGCCTACATTTGTCTCTCGACTTTTTTGTGCCTTGC
GGCTTGCCGTGAAACTAGACTTGATATGCAACCATGACAAGGGTATACTT
GAAATTGGGGCTCTATCCGTGGCTCAAAGTTATCTGGTGGTTCGGGGCCC
TTCCACAAGGGTAAATCATGCAAGCGATTAAGCAGGTATTTCTGCCATCA
GGCCGTAAATGTTTTGATAAATAAACTTTTATTCAGGTATGCATAAAGTG
CGCTCTGCAAATATCGGATGCAAACAATTGGAAAGAACCCTTATTTCCAC
CAGTTTTCCTTGATGACCTGAAACAAAAGGGAAATGCTGTGCTAAACGAG
TTATGTGAGAGTTAGGATGCAAAGGTGACAGAGGTGCCAATTTGTGGGAG
GTGGTTCCAGGCATGTCAAAAGGTACATTATGTGCGGGAGATCATACTGT
GGGCTATAAACTAATATCTAGTCGGACACGATCTTAACGGGGACATGGGA
GAAGAAGCCAAGACGGAAGACGCTCAATGCGGGTAACATATTTACCAGTC
ATTAGGGAAATACACCAACAACCCACATGCTTGAGAGTAGCAGTTCCAGC
CAACCAGAGCAAGAAAGACAAAGAGAGTGAGAGAGAGCGGGTCGCCTCCC
CAAGGACCCTCCATGGCGATGGTTAGTGCGTGCTTGCAGCGGCTAAAAGT
GATGCGTGAGATCAGAAGCTCTACAGTGGGAGGCGGAAGTATGTTAGAAA
GTGAAGGTGGTCTCAAAGCTGACGACGACACTAGCGCATGGAATTGTCGG
ACAACAGCATGACATTGACATCCTCCTCGGTTAGCTCAGTCACCTTAGTC
CAGCACCGATCCCGGGAGGAGGCCTGAATGGCCTCAATCACGGCCTGAAT
GTGCTGGGCATCGTTGAAGGTGGCGAAACTGCCTTTGGAGCCGTCAGCGT
GGCCGCTCCGGGTGGGGGATTCCACCTTGGTTGCATTGTGAGGAGAGCGA
TCTCCCGTCCCATCCGAAAGGAAGAGCTCGGCCAAGCGAGTGGCCATTGT
GGACACGCCTTTCAAGTAGATGGGCGGCAAAAGCGGATCTTCCAGTTCTG
TCAGACTTGCGATATCATTCCCGTCTTGGAGCAGGAGCAAGTCCTCGTCC
GAGGAGTCCGTCTGGTGACCGTAGAGGTCGCCATTCCTCACCACCATCCG
CCCCTCGTCTCCGCAGATGTGAATCTCTTGCTCGAAGCCGCACACTTGCG
AGTTCAGCGTCACGGAAGCAAAGGTGCCCTCGCTGAGCTCCATTTGAAAG
GCCACAAAGTCGTCACTTTTGATTTGACGGATACCATTGATGTACTTAGT
GGTCTTGGTGAACGTCCGGACGGTGCCGTGCACTCTGGTAACTTGTTGGT
CGGTCAGAAAGTGTATGAGATCGATGATATGAGCCCCAAAGACATTGAGC
ACCCCCCCACCCATGATGTTATCACACAGCCAGGAATAGCTCTTGCCTAC
AATGCTGCCCATGCTCAGGCGAACGTTGCAGAGGTTGACTTTAGACCCCA
CGAATCCGGACTGAATGGCACTCTTCATCTTGGTGATGGCAGGGAGAAAG
CGGAGGCCGTTGCAGAGGAAAGAGCACAGATTGGGATAGTATTGAGCGGC
TTGCACCATGCGGAGGGTTTCGTCCTGATTGAGGCCAGTGGGTGA
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Synonyms
The feature 'double-stranded rna-binding protein staufen homolog 2 isoform x7' has the following synonyms
Synonym
Tk10366
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