protein beta isoform-like isoform x3, maker-scaffold2255_size18018-snap-gene-0.5 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of protein beta isoform-like isoform x3 vs. L. salmonis genes
Match: EMLSAG00000011532 (supercontig:LSalAtl2s:LSalAtl2s799:336948:340588:1 gene:EMLSAG00000011532 transcript:EMLSAT00000011532 description:"augustus_masked-LSalAtl2s799-processed-gene-3.12") HSP 1 Score: 174.096 bits (440), Expect = 6.069e-52 Identity = 77/92 (83.70%), Postives = 82/92 (89.13%), Query Frame = 0 Query: 239 VGQDSLRPMPVTAATTSEQMAALLGPSWKSRQPRMCQYCQRMFSNKFNLKQHILNMHTVGRELHCEICQKKVKNKWYLRRHHVTHHGAPLKK 330 + D MP+T++ TSEQMAALLGPSWKSRQPRMC YC+RMFSNKFNLKQHILNMHTVGREL CE CQKKVKNKWYLRRHHVTHHGAPLKK Sbjct: 262 INNDEEVLMPLTSSATSEQMAALLGPSWKSRQPRMCPYCKRMFSNKFNLKQHILNMHTVGRELQCEQCQKKVKNKWYLRRHHVTHHGAPLKK 353
BLAST of protein beta isoform-like isoform x3 vs. L. salmonis genes
Match: EMLSAG00000000768 (supercontig:LSalAtl2s:LSalAtl2s1122:98013:99738:-1 gene:EMLSAG00000000768 transcript:EMLSAT00000000768 description:"augustus_masked-LSalAtl2s1122-processed-gene-1.7") HSP 1 Score: 51.9878 bits (123), Expect = 9.775e-8 Identity = 41/132 (31.06%), Postives = 62/132 (46.97%), Query Frame = 0 Query: 195 MDNSGQTLPRPGSPSSASLTQESVGSPISSEGGSLPPQLIDPKDVGQ-DSLRPMPVTAATTSEQMAALLGPSWKSRQPRMC--QYCQRMFSNKFNLKQHILNMHTVGRELHCEICQKKVKNKWYLRRHHVTH 323 +D++ Q RPGS SL+ V SP SS G SL L P + D P P S S P C + C + F+++F LK+H+L +H+ ++ HCE+C + + K +L+ H H Sbjct: 21 LDHTYQEDQRPGS----SLSGGGVDSPSSSTGNSL---LKSPYPCPECDKTFPSPGKLRQHSY--------SHSGETPFECLEEACDKKFTSRFKLKRHVL-IHSQDKQFHCEVCNRPFRRKDHLKNHEKVH 136
BLAST of protein beta isoform-like isoform x3 vs. L. salmonis genes
Match: EMLSAG00000010644 (supercontig:LSalAtl2s:LSalAtl2s705:55248:64977:-1 gene:EMLSAG00000010644 transcript:EMLSAT00000010644 description:"maker-LSalAtl2s705-augustus-gene-0.45") HSP 1 Score: 49.6766 bits (117), Expect = 6.621e-7 Identity = 19/52 (36.54%), Postives = 30/52 (57.69%), Query Frame = 0 Query: 274 CQYCQRMFSNKFNLKQHILNMHTVGRELHCEICQKKVKNKWYLRRHHVTHHG 325 C+ C ++F+ ++K HIL +H R C +C K+ K +LR+H TH G Sbjct: 786 CRVCLKLFTRNSDVKAHILRVHCGDRRYPCTMCGKRFKESTHLRKHLYTHTG 837
BLAST of protein beta isoform-like isoform x3 vs. nr
Match: gi|1325328446|ref|XP_023346068.1| (broad-complex core protein isoforms 1/2/3/4/5-like [Eurytemora affinis]) HSP 1 Score: 167.933 bits (424), Expect = 1.611e-44 Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0 Query: 256 EQMAALLGPSWKSRQPRMCQYCQRMFSNKFNLKQHILNMHTVGRELHCEICQKKVKNKWYLRRHHVTHHGAPLKK 330 EQMAALLGPSWKSRQPRMCQYC RMFSNKFNLKQHILNMHTVGRE+ CEIC KKVKNKWYLRRHHVTHHGAPLKK Sbjct: 392 EQMAALLGPSWKSRQPRMCQYCNRMFSNKFNLKQHILNMHTVGREMQCEICNKKVKNKWYLRRHHVTHHGAPLKK 466
BLAST of protein beta isoform-like isoform x3 vs. nr
Match: gi|1067092186|ref|XP_018007899.1| (PREDICTED: uncharacterized zinc finger protein CG2678-like [Hyalella azteca]) HSP 1 Score: 110.153 bits (274), Expect = 5.760e-26 Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 0 Query: 249 VTAATTSEQMAALLGPSWKSRQPRMCQYCQRMFSNKFNLKQHILNMHTVGRELHCEICQKKVKNKWYLRRHHVTHHGAPLKK 330 +T++ + ++ + G W SRQP +C CQR+FSNKFNLKQHI+N+HT G + C C K KNKWYLRRH VTHHGAPL++ Sbjct: 40 LTSSMSRGAVSLVSGKLWHSRQPGICPICQRVFSNKFNLKQHIINIHTTGEGIKCAACHKLCKNKWYLRRHQVTHHGAPLRR 121
BLAST of protein beta isoform-like isoform x3 vs. nr
Match: gi|1067073955|ref|XP_018020482.1| (PREDICTED: uncharacterized protein LOC108676840 [Hyalella azteca]) HSP 1 Score: 111.694 bits (278), Expect = 1.630e-23 Identity = 42/65 (64.62%), Postives = 53/65 (81.54%), Query Frame = 0 Query: 266 WKSRQPRMCQYCQRMFSNKFNLKQHILNMHTVGRELHCEICQKKVKNKWYLRRHHVTHHGAPLKK 330 W+ QPR+C +C + FSN FNLKQH++N+HTVG+ L C +C K VKNKWYLR+HHVT HGAPLK+ Sbjct: 401 WRCMQPRLCPFCWKTFSNSFNLKQHVVNVHTVGQGLQCHLCHKTVKNKWYLRKHHVTAHGAPLKR 465
BLAST of protein beta isoform-like isoform x3 vs. nr
Match: gi|1325331906|ref|XP_023347810.1| (dr1-associated corepressor homolog [Eurytemora affinis]) HSP 1 Score: 103.99 bits (258), Expect = 2.957e-21 Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 0 Query: 266 WKSRQPRMCQYCQRMFSNKFNLKQHILNMHTVGRELHCEICQKKVKNKWYLRRHHVTHHGAPLKK 330 W+ QPR+C YC + FSN FNLKQHI+N+H + + C +CQK VKNKWYLR+H VT HGAPLK+ Sbjct: 344 WRCMQPRVCNYCWKTFSNSFNLKQHIVNVHVQSQGVTCNVCQKVVKNKWYLRKHLVTAHGAPLKR 408
BLAST of protein beta isoform-like isoform x3 vs. nr
Match: gi|1339043271|ref|XP_023709695.1| (protein abrupt-like isoform X2 [Cryptotermes secundus]) HSP 1 Score: 85.5001 bits (210), Expect = 9.563e-15 Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 0 Query: 266 WKSRQPRMCQYCQRMFSNKFNLKQHILNMHTVGRELHCEICQKKVKNKWYLRRHHVTHHGAPLKK 330 W+ QPR+C C + FS FNLKQHI N+H + + C +C+K KNK YLR+H VT HGAPL++ Sbjct: 465 WRCMQPRICPICFKTFSTSFNLKQHIQNVHLPSQGIQCHLCRKCFKNKRYLRKHLVTFHGAPLRR 529
BLAST of protein beta isoform-like isoform x3 vs. nr
Match: gi|662189667|ref|XP_008467570.1| (PREDICTED: protein tramtrack, beta isoform-like isoform X3 [Diaphorina citri]) HSP 1 Score: 83.9593 bits (206), Expect = 2.366e-14 Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 0 Query: 266 WKSRQPRMCQYCQRMFSNKFNLKQHILNMHTVGRELHCEICQKKVKNKWYLRRHHVTHHGAPLKK 330 W+ QP++C C R FSN NL+QHI N+H+ + + C IC + KNK YLR+H+V HGAPL+K Sbjct: 321 WRCMQPQICHMCSRKFSNAGNLRQHITNVHSPAQHVPCSICARVFKNKEYLRKHYVQIHGAPLRK 385
BLAST of protein beta isoform-like isoform x3 vs. nr
Match: gi|1101399684|ref|XP_018910894.1| (PREDICTED: protein abrupt-like isoform X3 [Bemisia tabaci]) HSP 1 Score: 81.2629 bits (199), Expect = 2.636e-13 Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 0 Query: 264 PSWKSRQPRMCQYCQRMFSNKFNLKQHILNMHTVGRELHCEICQKKVKNKWYLRRHHVTHHGAPLKK 330 P WK QP++C+ C ++FSN NL+QH+ N+H G + C IC + KNK YLR+H V H PLK+ Sbjct: 375 PDWKCMQPQVCRLCFKVFSNAGNLRQHVTNVHLPGERVLCNICSRYFKNKEYLRKHQVQTHNLPLKR 441
BLAST of protein beta isoform-like isoform x3 vs. nr
Match: gi|1101399686|ref|XP_018910895.1| (PREDICTED: protein abrupt-like isoform X4 [Bemisia tabaci]) HSP 1 Score: 80.8777 bits (198), Expect = 2.835e-13 Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 0 Query: 264 PSWKSRQPRMCQYCQRMFSNKFNLKQHILNMHTVGRELHCEICQKKVKNKWYLRRHHVTHHGAPLKK 330 P WK QP++C+ C ++FSN NL+QH+ N+H G + C IC + KNK YLR+H V H PLK+ Sbjct: 371 PDWKCMQPQVCRLCFKVFSNAGNLRQHVTNVHLPGERVLCNICSRYFKNKEYLRKHQVQTHNLPLKR 437
BLAST of protein beta isoform-like isoform x3 vs. nr
Match: gi|939279901|ref|XP_014260548.1| (protein bric-a-brac 2 isoform X2 [Cimex lectularius]) HSP 1 Score: 80.1073 bits (196), Expect = 3.057e-13 Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 0 Query: 266 WKSRQPRMCQYCQRMFSNKFNLKQHILNMHTVGRELHCEICQKKVKNKWYLRRHHVTHHGAPLKK 330 W+ QP+ CQ C ++FSN NL+QHI N+H G + C +C + KNK YLR+HHV H APL++ Sbjct: 281 WRCMQPQRCQLCGKVFSNSGNLRQHISNVHMPGERVPCNVCYRMFKNKEYLRKHHVQTHNAPLRR 345
BLAST of protein beta isoform-like isoform x3 vs. nr
Match: gi|939662663|ref|XP_014279019.1| (PREDICTED: protein bric-a-brac 2-like isoform X2 [Halyomorpha halys]) HSP 1 Score: 77.7962 bits (190), Expect = 1.847e-12 Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 0 Query: 266 WKSRQPRMCQYCQRMFSNKFNLKQHILNMHTVGRELHCEICQKKVKNKWYLRRHHVTHHGAPLKK 330 W+ QP+ C C ++FSN NL+QHI N+H G ++ C +C + KNK YLR+HHV H APLK+ Sbjct: 285 WRCMQPQRCHLCGKVFSNSGNLRQHISNVHMPGEKVPCNVCSRLFKNKEYLRKHHVQTHNAPLKR 349 The following BLAST results are available for this feature:
BLAST of protein beta isoform-like isoform x3 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 3
BLAST of protein beta isoform-like isoform x3 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of protein beta isoform-like isoform x3 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold2255_size18018:1..4154+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold2255_size18018-snap-gene-0.5 ID=maker-scaffold2255_size18018-snap-gene-0.5|Name=protein beta isoform-like isoform x3|organism=Tigriopus kingsejongensis|type=gene|length=4154bp|location=Sequence derived from alignment at scaffold2255_size18018:1..4154+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'protein beta isoform-like isoform x3' has the following synonyms
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