lsm domain-containing protein 1, maker-scaffold349_size200065-snap-gene-1.25 (gene) Tigriopus kingsejongensis

Overview


Name	lsm domain-containing protein 1
Unique Name	maker-scaffold349_size200065-snap-gene-1.25
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

[Close]

BLAST of lsm domain-containing protein 1 vs. L. salmonis genes
Match: EMLSAG00000003507 (supercontig:LSalAtl2s:LSalAtl2s191:214711:215070:-1 gene:EMLSAG00000003507 transcript:EMLSAT00000003507 description:"augustus_masked-LSalAtl2s191-processed-gene-2.0")

HSP 1 Score: 84.3445 bits (207), Expect = 1.313e-21
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 0

Query:  104 PSSAPSGKQLLRGWLNKHLKIVLSDGRILVGVFLCTDQNANVILGSCTESTPEQEEGSEPRILGLAMVPGRHIVSVHVDEPDS 186
            P     G++LL  WL K   I LSDGR + G FLCTD++ANVIL +CTE   +   GS  + LGL +VPG+HI S+++D  D+
Sbjct:    2 PEEEVDGRKLLNNWLKKSTVIHLSDGRHVEGTFLCTDRDANVILSACTEYVEDSAAGS--KFLGLVLVPGKHIKSIYIDVKDT 82

[Close]

BLAST of lsm domain-containing protein 1 vs. L. salmonis genes
Match: EMLSAG00000000402 (supercontig:LSalAtl2s:LSalAtl2s1063:89051:89620:1 gene:EMLSAG00000000402 transcript:EMLSAT00000000402 description:"augustus_masked-LSalAtl2s1063-processed-gene-0.5")

HSP 1 Score: 47.3654 bits (111), Expect = 2.606e-7
Identity = 25/74 (33.78%), Postives = 39/74 (52.70%), Query Frame = 0

Query:  122 LKIVLSDGRILVGVFLCTDQNANVILGSCTE-----------STPEQEEGSEPRILGLAMVPGRHIVSVHVDEP 184
            ++I+L D R  +G F   D++ N+I+G C E             P   E  E R+LGL ++ G +IVS+ V+ P
Sbjct:    1 MRIILQDXRTFIGTFKAFDKHMNLIMGDCEEFRKLRPKNVAKGCPAPVEREEKRVLGLVLLRGENIVSMTVEGP 74

[Close]

BLAST of lsm domain-containing protein 1 vs. SwissProt
Match: gi|74732854|sp|Q9BRA0.1|LSMD1_HUMAN (RecName: Full=N-alpha-acetyltransferase 38, NatC auxiliary subunit; AltName: Full=LSM domain-containing protein 1; AltName: Full=Phosphonoformate immuno-associated protein 2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.126e-20
Identity = 43/79 (54.43%), Postives = 54/79 (68.35%), Query Frame = 0

Query:  105 SSAPSGKQLLRGWLNKHLKIVLSDGRILVGVFLCTDQNANVILGSCTESTPEQEEGS--EPRILGLAMVPGRHIVSVHV 181
            S+A   +Q L   LNK ++I ++DGR LVG FLCTD++ NVILGS  E     +  S  EPR+LGLAMVPG HIVS+ V
Sbjct:   36 SAAERARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEV 114

[Close]

BLAST of lsm domain-containing protein 1 vs. SwissProt
Match: gi|81904908|sp|Q9D2U5.1|LSMD1_MOUSE (RecName: Full=N-alpha-acetyltransferase 38, NatC auxiliary subunit; AltName: Full=LSM domain-containing protein 1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.058e-20
Identity = 43/79 (54.43%), Postives = 53/79 (67.09%), Query Frame = 0

Query:  105 SSAPSGKQLLRGWLNKHLKIVLSDGRILVGVFLCTDQNANVILGSCTESTPEQEEGS--EPRILGLAMVPGRHIVSVHV 181
            S A   +Q L   LNK ++I ++DGR LVG FLCTD++ NVILGS  E     +  S  EPR+LGLAMVPG HIVS+ V
Sbjct:   36 SPATRARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEV 114

[Close]

BLAST of lsm domain-containing protein 1 vs. SwissProt
Match: gi|156630951|sp|A2BIG9.1|LSMD1_DANRE (RecName: Full=N-alpha-acetyltransferase 38, NatC auxiliary subunit; AltName: Full=LSM domain-containing protein 1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.077e-19
Identity = 40/72 (55.56%), Postives = 53/72 (73.61%), Query Frame = 0

Query:  114 LRGWLNKHLKIVLSDGRILVGVFLCTDQNANVILGSCTE---STPEQEEGSEPRILGLAMVPGRHIVSVHVD 182
            L   LNK ++I ++DGR LVG+FLCTD++ NVILGS  E   ST    +G EPR+LGLAM+PG H+VS+ V+
Sbjct:   28 LENLLNKSMRIRMTDGRTLVGLFLCTDRDCNVILGSAQEFLKSTDSLSQG-EPRVLGLAMIPGHHVVSIEVE 98

[Close]

BLAST of lsm domain-containing protein 1 vs. SwissProt
Match: gi|82185514|sp|Q6NU60.1|LMD1B_XENLA (RecName: Full=N-alpha-acetyltransferase 38-B, NatC auxiliary subunit; AltName: Full=LSM domain-containing protein 1-B)

HSP 1 Score: 81.6481 bits (200), Expect = 2.737e-19
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = 0

Query:   96 TSESIVESPSSAPSGKQLLRGWLNKHLKIVLSDGRILVGVFLCTDQNANVILGSCTE--STPEQEEGSEPRILGLAMVPGRHIVSVHVD 182
            T++S VES  +A   +  L   LN++++I ++DGR L+G FLCTD++ NVILGS  E     +     EPR+LGLAMVPG HIVS+ V+
Sbjct:   18 TADSDVESGDTA---RHKLESLLNRNMRIQMTDGRSLIGCFLCTDRDCNVILGSAQEFLRPSDSFRIREPRVLGLAMVPGHHIVSIQVE 103

[Close]

BLAST of lsm domain-containing protein 1 vs. SwissProt
Match: gi|82184579|sp|Q6GQ67.1|LMD1A_XENLA (RecName: Full=N-alpha-acetyltransferase 38-A, NatC auxiliary subunit; AltName: Full=LSM domain-containing protein 1-A)

HSP 1 Score: 77.7962 bits (190), Expect = 8.758e-18
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 0

Query:  109 SGKQLLRGWLNKHLKIVLSDGRILVGVFLCTDQNANVILGSCTESTPEQEEG--SEPRILGLAMVPGRHIVSVHVD 182
            + +  L   LN++++I ++DGR L+G FLCTD++ NVILGS  E     +     EPR+LGLAMVPG HIVS+ V+
Sbjct:   28 TARHKLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVILGSAQEFLRPSDSFPVREPRVLGLAMVPGHHIVSIQVE 103

[Close]

BLAST of lsm domain-containing protein 1 vs. SwissProt
Match: gi|156630952|sp|A4IGZ4.2|LSMD1_XENTR (RecName: Full=N-alpha-acetyltransferase 38, NatC auxiliary subunit; AltName: Full=LSM domain-containing protein 1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.641e-18
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 0

Query:  109 SGKQLLRGWLNKHLKIVLSDGRILVGVFLCTDQNANVILGSCTESTPEQEEG--SEPRILGLAMVPGRHIVSVHVD 182
            + +  L   LN++++I ++DGR L+G FLCTD++ NVILGS  E     +     EPR+LGLAMVPG HIVS+ V+
Sbjct:   28 TARHKLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVILGSAQEFLRPSDSFPVREPRVLGLAMVPGHHIVSIQVE 103

[Close]

BLAST of lsm domain-containing protein 1 vs. SwissProt
Match: gi|29427664|sp|P91918.1|RSMB_CAEEL (RecName: Full=Probable small nuclear ribonucleoprotein-associated protein B; Short=snRNP-B; AltName: Full=Sm protein B; Short=Sm-B; Short=SmB)

HSP 1 Score: 64.3142 bits (155), Expect = 3.825e-12
Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 0

Query:  118 LNKHLKIVLSDGRILVGVFLCTDQNANVILGSCTE------STPEQEEGSEPRILGLAMVPGRHIVSVHVDEP 184
            LN  +KI+L DGR  +G F   D++ N++L  C E         ++ +G E RILGL +V G HIVS+ VD P
Sbjct:   13 LNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILGLVLVRGEHIVSMTVDGP 85

[Close]

BLAST of lsm domain-containing protein 1 vs. SwissProt
Match: gi|259016433|sp|O43080.2|NAA38_SCHPO (RecName: Full=N-alpha-acetyltransferase 38, NatC auxiliary subunit; AltName: Full=N-terminal acetyltransferase C complex subunit naa38)

HSP 1 Score: 55.0694 bits (131), Expect = 3.994e-9
Identity = 32/87 (36.78%), Postives = 44/87 (50.57%), Query Frame = 0

Query:   95 MTSESIVESPSSAPSGKQLLRGWLNKHLKIVLSDGRILVGVFLCTDQNANVILGSCTESTPEQEEGSEPRILGLAMVPGRHIVSVHV 181
             TS  + E      +G+ LL  WLN+ + I + D R  +G FLCTD+    IL + TE           R LGL ++PG+HI S  V
Sbjct:   33 FTSPKLDEFSLIMENGEILLTSWLNRSVHIEIFDERKFIGKFLCTDREGAAILSNTTEYNK-----GFSRALGLVVIPGKHIKSFSV 114

[Close]

BLAST of lsm domain-containing protein 1 vs. SwissProt
Match: gi|74857874|sp|Q55A45.1|RSMB_DICDI (RecName: Full=Small nuclear ribonucleoprotein-associated protein B; Short=snRNP-B; AltName: Full=Sm protein B; Short=Sm-B; Short=SmB)

HSP 1 Score: 51.9878 bits (123), Expect = 3.949e-7
Identity = 25/84 (29.76%), Postives = 48/84 (57.14%), Query Frame = 0

Query:  105 SSAPSGKQLLRGWLNKHLKIVLSDGRILVGVFLCTDQNANVILGSCTE----STPEQEEGSEPRILGLAMVPGRHIVSVHVDEP 184
            S  P   ++L+ ++N  +++ + DGR++VG FL  D++ NV++    E        +E+  E R LG+ ++ G  +VS+ V+ P
Sbjct:    2 SGMPKSSKMLQ-YINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEKRTLGMILIRGETVVSMSVEAP 84

[Close]

BLAST of lsm domain-containing protein 1 vs. SwissProt
Match: gi|134038|sp|P27048.1|RSMB_MOUSE (RecName: Full=Small nuclear ribonucleoprotein-associated protein B; Short=snRNP-B; Short=snRPB; AltName: Full=Sm protein B; Short=Sm-B; Short=SmB)

HSP 1 Score: 50.8322 bits (120), Expect = 7.746e-7
Identity = 25/73 (34.25%), Postives = 42/73 (57.53%), Query Frame = 0

Query:  118 LNKHLKIVLSDGRILVGVFLCTDQNANVILGSCTE------STPEQEEGSEPRILGLAMVPGRHIVSVHVDEP 184
            ++  ++ +L DGRI +G F   D++ N+IL  C E         +Q E  E R+LGL ++ G ++VS+ V+ P
Sbjct:   13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGP 85

[Close]

BLAST of lsm domain-containing protein 1 vs. nr
Match: gi|919017621|ref|XP_013393113.1| (N-alpha-acetyltransferase 38, NatC auxiliary subunit-like [Lingula anatina])

HSP 1 Score: 109.383 bits (272), Expect = 1.161e-27
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 0

Query:   97 SESIVESPSSAPSGKQLLRGWLNKHLKIVLSDGRILVGVFLCTDQNANVILGSCTE--STPEQEEGSEPRILGLAMVPGRHIVSVHVDE 183
            S++I E+     +G++ L GWLNK ++I ++DGR LVGVFLCTD++ NVILGSC E    PE  E  +PR+LGLAMVPGRH+VS+ VD+
Sbjct:    5 SKNISEAEEEKSAGRKKLEGWLNKTMRIRMTDGRTLVGVFLCTDKDKNVILGSCQEYLKLPESGEQEDPRVLGLAMVPGRHLVSIEVDQ 93

[Close]

BLAST of lsm domain-containing protein 1 vs. nr
Match: gi|1339050871|ref|XP_023713726.1| (N-alpha-acetyltransferase 38-A, NatC auxiliary subunit isoform X1 [Cryptotermes secundus])

HSP 1 Score: 109.383 bits (272), Expect = 2.267e-27
Identity = 54/105 (51.43%), Postives = 71/105 (67.62%), Query Frame = 0

Query:   81 QNPVNPRKTINIQTMTSESIVESPSSAPSGKQLLRGWLNKHLKIVLSDGRILVGVFLCTDQNANVILGSCTESTPEQEEG--SEPRILGLAMVPGRHIVSVHVDE 183
            + PVN     +I+    +    S +    GKQ L GWLNK  KI ++DGR+LVGVFLCTD++ NVILGSC+E    ++ G   EPR+LGL MVPGRHIVS+H+D+
Sbjct:   14 ETPVNS----DIEMDDKKKSTTSSNPGTPGKQKLSGWLNKTFKIEMTDGRVLVGVFLCTDRDGNVILGSCSEYLKPEDNGVIEEPRVLGLVMVPGRHIVSIHIDD 114

[Close]

BLAST of lsm domain-containing protein 1 vs. nr
Match: gi|1227969467|ref|XP_021916112.1| (N-alpha-acetyltransferase 38, NatC auxiliary subunit [Zootermopsis nevadensis] >gi|646719162|gb|KDR21370.1| LSM domain-containing protein 1 [Zootermopsis nevadensis])

HSP 1 Score: 108.997 bits (271), Expect = 2.326e-27
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 0

Query:  102 ESPSSAPSGKQLLRGWLNKHLKIVLSDGRILVGVFLCTDQNANVILGSCTESTPEQEEG--SEPRILGLAMVPGRHIVSVHVDE 183
            +S +S  SGKQ L  WLNK+ KI ++DGR+L+GVFLCTD++ NVILGSC+E    ++ G   EPR+LGL MVPGRHIVS+H+D+
Sbjct:   27 KSSTSETSGKQKLCSWLNKNFKIEMTDGRVLIGVFLCTDRDGNVILGSCSEYLKPEDNGVIEEPRVLGLVMVPGRHIVSIHLDD 110

[Close]

BLAST of lsm domain-containing protein 1 vs. nr
Match: gi|1068415418|ref|XP_018053402.1| (PREDICTED: N-alpha-acetyltransferase 38-B, NatC auxiliary subunit isoform X2 [Atta colombica])

HSP 1 Score: 108.997 bits (271), Expect = 2.736e-27
Identity = 51/85 (60.00%), Postives = 65/85 (76.47%), Query Frame = 0

Query:   98 ESIVESPSSAPSGKQLLRGWLNKHLKIVLSDGRILVGVFLCTDQNANVILGSCTESTPEQEEGSEPRILGLAMVPGRHIVSVHVD 182
            E+++   SSA   KQ LR WLN+HL+I ++DGR+L G FLCTD++ANVILGSCTE      E +E R+LGL MVPGRHIVS+H+D
Sbjct:   39 ETVISEESSA---KQKLRSWLNRHLRIEMTDGRVLRGAFLCTDRDANVILGSCTEYLS--TEHTEARVLGLVMVPGRHIVSIHLD 118

[Close]

BLAST of lsm domain-containing protein 1 vs. nr
Match: gi|1070196179|ref|XP_018353733.1| (PREDICTED: N-alpha-acetyltransferase 38-B, NatC auxiliary subunit isoform X2 [Trachymyrmex septentrionalis])

HSP 1 Score: 108.612 bits (270), Expect = 3.072e-27
Identity = 51/85 (60.00%), Postives = 65/85 (76.47%), Query Frame = 0

Query:   98 ESIVESPSSAPSGKQLLRGWLNKHLKIVLSDGRILVGVFLCTDQNANVILGSCTESTPEQEEGSEPRILGLAMVPGRHIVSVHVD 182
            E+++   SSA   KQ LR WLN+HL+I ++DGR+L G FLCTD++ANVILGSCTE      E +E R+LGL MVPGRHIVS+H+D
Sbjct:   34 EAVISEESSA---KQKLRSWLNRHLRIEMTDGRVLRGAFLCTDRDANVILGSCTEYLS--TEHTEARVLGLVMVPGRHIVSIHLD 113

[Close]

BLAST of lsm domain-containing protein 1 vs. nr
Match: gi|746830483|ref|XP_011068212.1| (PREDICTED: N-alpha-acetyltransferase 38-B, NatC auxiliary subunit isoform X2 [Acromyrmex echinatior])

HSP 1 Score: 108.612 bits (270), Expect = 3.072e-27
Identity = 51/85 (60.00%), Postives = 65/85 (76.47%), Query Frame = 0

Query:   98 ESIVESPSSAPSGKQLLRGWLNKHLKIVLSDGRILVGVFLCTDQNANVILGSCTESTPEQEEGSEPRILGLAMVPGRHIVSVHVD 182
            E+++   SSA   KQ LR WLN+HL+I ++DGR+L G FLCTD++ANVILGSCTE      E +E R+LGL MVPGRHIVS+H+D
Sbjct:   34 ETVISEESSA---KQKLRSWLNRHLRIEMTDGRVLRGAFLCTDRDANVILGSCTEYLS--TEHTEARVLGLVMVPGRHIVSIHLD 113

[Close]

BLAST of lsm domain-containing protein 1 vs. nr
Match: gi|506968185|gb|AGM32436.1| (LSM domain-containing protein 1-A-like protein [Coptotermes formosanus])

HSP 1 Score: 108.997 bits (271), Expect = 3.434e-27
Identity = 49/83 (59.04%), Postives = 66/83 (79.52%), Query Frame = 0

Query:  103 SPSSAPSGKQLLRGWLNKHLKIVLSDGRILVGVFLCTDQNANVILGSCTESTPEQEEG--SEPRILGLAMVPGRHIVSVHVDE 183
            + ++A  GKQ L GWLNK+ KI ++DGR+L+GVFLCTD++ NVILGSC+E    ++ G   EPR+LGL MVPGRHIVS+H+D+
Sbjct:   31 TSNAATPGKQKLCGWLNKNFKIEMTDGRVLIGVFLCTDRDGNVILGSCSEYLKPEDNGVIEEPRVLGLVMVPGRHIVSIHLDD 113

[Close]

BLAST of lsm domain-containing protein 1 vs. nr
Match: gi|1009353657|gb|KYM79043.1| (LSM domain-containing protein 1-A [Atta colombica])

HSP 1 Score: 108.227 bits (269), Expect = 3.601e-27
Identity = 51/85 (60.00%), Postives = 65/85 (76.47%), Query Frame = 0

Query:   98 ESIVESPSSAPSGKQLLRGWLNKHLKIVLSDGRILVGVFLCTDQNANVILGSCTESTPEQEEGSEPRILGLAMVPGRHIVSVHVD 182
            E+++   SSA   KQ LR WLN+HL+I ++DGR+L G FLCTD++ANVILGSCTE      E +E R+LGL MVPGRHIVS+H+D
Sbjct:   26 ETVISEESSA---KQKLRSWLNRHLRIEMTDGRVLRGAFLCTDRDANVILGSCTEYLS--TEHTEARVLGLVMVPGRHIVSIHLD 105

[Close]

BLAST of lsm domain-containing protein 1 vs. nr
Match: gi|751204910|ref|XP_011176021.1| (PREDICTED: N-alpha-acetyltransferase 38, NatC auxiliary subunit [Solenopsis invicta])

HSP 1 Score: 108.227 bits (269), Expect = 3.774e-27
Identity = 57/101 (56.44%), Postives = 70/101 (69.31%), Query Frame = 0

Query:   82 NPVNPRKTINIQTMTSESIVESPSSAPSGKQLLRGWLNKHLKIVLSDGRILVGVFLCTDQNANVILGSCTESTPEQEEGSEPRILGLAMVPGRHIVSVHVD 182
            N VN       QT+ SE   ESP+     KQ LR WLN+HL+I ++DGR+L G FLCTD++ANVILGSCTE      E +E R+LGL MVPGRHIVS+H+D
Sbjct:   14 NVVNNEHGSEEQTVISE---ESPA-----KQKLRSWLNRHLRIEMTDGRVLRGAFLCTDRDANVILGSCTEYLS--TEHTEARVLGLVMVPGRHIVSIHLD 104

[Close]

BLAST of lsm domain-containing protein 1 vs. nr
Match: gi|1059209639|ref|XP_017767436.1| (PREDICTED: N-alpha-acetyltransferase 38, NatC auxiliary subunit isoform X1 [Eufriesea mexicana])

HSP 1 Score: 108.227 bits (269), Expect = 3.857e-27
Identity = 50/102 (49.02%), Postives = 70/102 (68.63%), Query Frame = 0

Query:   81 QNPVNPRKTINIQTMTSESIVESPSSAPSGKQLLRGWLNKHLKIVLSDGRILVGVFLCTDQNANVILGSCTESTPEQEEGSEPRILGLAMVPGRHIVSVHVD 182
             N  N     +I    S ++ ++ S     KQ LRGWLN+ L+I ++DGR+L+G FLCTD++ANVILGSC+E     E+ +E R LGLAM+PGRHIV++H+D
Sbjct:   11 HNVSNTTNNDHIHEDDSVTLQDTDSDDSPAKQKLRGWLNRKLRIKITDGRVLIGAFLCTDRDANVILGSCSEFLS--EDHTEERTLGLAMIPGRHIVTIHID 110

The following BLAST results are available for this feature:

BLAST of lsm domain-containing protein 1 vs. L. salmonis genes
BLAST of lsm domain-containing protein 1 vs. SwissProt
BLAST of lsm domain-containing protein 1 vs. nr

BLAST of lsm domain-containing protein 1 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 2


Match Name	E-value	Identity	Description
EMLSAG00000003507	1.313e-21	48.19	supercontig:LSalAtl2s:LSalAtl2s191:214711:215070:-...	[more]
EMLSAG00000000402	2.606e-7	33.78	supercontig:LSalAtl2s:LSalAtl2s1063:89051:89620:1 ...	[more]

BLAST of lsm domain-containing protein 1 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 13


Match Name	E-value	Identity	Description
gi\|74732854\|sp\|Q9BRA0.1\|LSMD1_HUMAN	2.126e-20	54.43	RecName: Full=N-alpha-acetyltransferase 38, NatC a...	[more]
gi\|81904908\|sp\|Q9D2U5.1\|LSMD1_MOUSE	7.058e-20	54.43	RecName: Full=N-alpha-acetyltransferase 38, NatC a...	[more]
gi\|156630951\|sp\|A2BIG9.1\|LSMD1_DANRE	1.077e-19	55.56	RecName: Full=N-alpha-acetyltransferase 38, NatC a...	[more]
gi\|82185514\|sp\|Q6NU60.1\|LMD1B_XENLA	2.737e-19	48.31	RecName: Full=N-alpha-acetyltransferase 38-B, NatC...	[more]
gi\|82184579\|sp\|Q6GQ67.1\|LMD1A_XENLA	8.758e-18	48.68	RecName: Full=N-alpha-acetyltransferase 38-A, NatC...	[more]
gi\|156630952\|sp\|A4IGZ4.2\|LSMD1_XENTR	9.641e-18	48.68	RecName: Full=N-alpha-acetyltransferase 38, NatC a...	[more]
gi\|29427664\|sp\|P91918.1\|RSMB_CAEEL	3.825e-12	42.47	RecName: Full=Probable small nuclear ribonucleopro...	[more]
gi\|259016433\|sp\|O43080.2\|NAA38_SCHPO	3.994e-9	36.78	RecName: Full=N-alpha-acetyltransferase 38, NatC a...	[more]
gi\|74857874\|sp\|Q55A45.1\|RSMB_DICDI	3.949e-7	29.76	RecName: Full=Small nuclear ribonucleoprotein-asso...	[more]
gi\|134038\|sp\|P27048.1\|RSMB_MOUSE	7.746e-7	34.25	RecName: Full=Small nuclear ribonucleoprotein-asso...	[more]

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BLAST of lsm domain-containing protein 1 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|919017621\|ref\|XP_013393113.1\|	1.161e-27	56.18	N-alpha-acetyltransferase 38, NatC auxiliary subun...	[more]
gi\|1339050871\|ref\|XP_023713726.1\|	2.267e-27	51.43	N-alpha-acetyltransferase 38-A, NatC auxiliary sub...	[more]
gi\|1227969467\|ref\|XP_021916112.1\|	2.326e-27	59.52	N-alpha-acetyltransferase 38, NatC auxiliary subun...	[more]
gi\|1068415418\|ref\|XP_018053402.1\|	2.736e-27	60.00	PREDICTED: N-alpha-acetyltransferase 38-B, NatC au...	[more]
gi\|1070196179\|ref\|XP_018353733.1\|	3.072e-27	60.00	PREDICTED: N-alpha-acetyltransferase 38-B, NatC au...	[more]
gi\|746830483\|ref\|XP_011068212.1\|	3.072e-27	60.00	PREDICTED: N-alpha-acetyltransferase 38-B, NatC au...	[more]
gi\|506968185\|gb\|AGM32436.1\|	3.434e-27	59.04	LSM domain-containing protein 1-A-like protein [Co...	[more]
gi\|1009353657\|gb\|KYM79043.1\|	3.601e-27	60.00	LSM domain-containing protein 1-A [Atta colombica]	[more]
gi\|751204910\|ref\|XP_011176021.1\|	3.774e-27	56.44	PREDICTED: N-alpha-acetyltransferase 38, NatC auxi...	[more]
gi\|1059209639\|ref\|XP_017767436.1\|	3.857e-27	49.02	PREDICTED: N-alpha-acetyltransferase 38, NatC auxi...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold349_size200065	supercontig	scaffold349_size200065:170248..174596 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	-

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold349_size200065-snap-gene-1.25-mRNA-1	maker-scaffold349_size200065-snap-gene-1.25-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold349_size200065:170248..174596+

gene from alignment at scaffold349_size200065:170248..174596+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold349_size200065-snap-gene-1.25 ID=maker-scaffold349_size200065-snap-gene-1.25|Name=lsm domain-containing protein 1|organism=Tigriopus kingsejongensis|type=gene|length=4349bp|location=Sequence derived from alignment at scaffold349_size200065:170248..174596+ (Tigriopus kingsejongensis)
GTCCAAAACAAGATCGTGTACGGTAGATTCTGTCCCCTCCAAGGCCCTGC
ACTCTACACCCTTGGTCCCCTCCTTCTCAATCTCAAGGAACAAAGTAAAC
ATTAAGCAGGTTACCAACACCCCTGTGGATTTAGAACTTCCTGATAAGTG
AGCCTTCCTTGACCTCGATTGATCATGTTCGTGATCCAGAGTTCTTAATG
CAGTGGACCCGATCCTCTTCAGCTCTCTTGGCCGGCAATTTCGGAGCCTG
GTCCGGATTGTTGACCAAACTGACCTTTGACGCTTCCTTGACCGAATCGA
CATGTGCATTCATCTGGGACCAAACCGGTTGGGCTAATCAGCATTTGTCA
TCGCCCTGTGCATATGAGCAGGTAAAGATATGACCTCGTTCAAGCGGCCA
AAAGGCACAAATCATTCCGCTTCCAATCTTTTGGCTGATTTGGCTGCGTC
ATATGTCTGTTAAACATCGTTAACAATGTCAACAAGCCTTGGATTAATGG
CCAATTGGTGGAACCTCCCTGCGTATGTTGTTAATTGCCAGTGATAGGGT
ATCGTGGCCAAGCTGAGCATGACATGGTGATCTTGGTCACGATTTATTCA
TTAGAATGCTTGGTGTGCCGAATACGTGAAACCGTGGATGCGAGGCTAGA
TCGTGTCACCGCATTGAAATAAACTAGATTGGGGCTGGCCACGCCGAATC
TTCCGTTCCAGGAAATTGAAGCTTTCTCCTCGCCTGATTGTCGTAGCCCA
GATAGAGAGTGACGGCTTTCTAATCTTCTCTCCTGGCCATGGAATATTAT
CAACGAAGCCTCGAGGCCAGCTAACACTGCCTAACCTCGAGAGCAACACC
TTTGGGCTCGCTCTCGTATTGAGCTGCTACAACCAACTTCTCTGGAACTG
CTGCAGATTCTAATCCTATTCCATGAAGAGAAAGAACTTGGTGGAGTGGC
CTCTATCTGTTCCACGAACATGCAACAAAGTACGTTACCCAAAACGAGCT
AGTCCCTGCGTAGGCCAACGCGTTGTGAGTGAAAAGTGGCCCAAGTGTAT
GTTTTGAAATGGCCAGGAAGCACCGAGGACATTAAGTCAATTGACTGCGG
CCATGAGTCTAAGTCACTGAAAGTGCGAACGGGGGGACGGTGGAACGAAC
ATCAAACGAGGTGGAGCTGGCCAAGGAAATGTCAGAGGGAAATCAGTGAA
CACCCAACCGAGGTAGTGTGAGCAAGTCTAGCTGTGAGCCAAGTGAAACC
CTCTCAATTGACTTACCAAAAAAACCTGTCCATTTGGCTGACAGGGTGCA
ATTCCAAGCTCGCTTTGAGGAAAACGGATCCTCACAAAAAATATCAAGAC
CCATGTCGTTTAAAAAGAAGTCCTTGGCCAAATTGGCCAGACTGCGCAGT
AAGTCAACCCACAACGTGGCCGAAGGCCTTGACAGCGAGGACGAGTCCTT
GGCCGCCAGGGGAAAAGCTTATGGATCAGAAAAGCGAATGTCCTGGCAGC
ACGATACCCATCTGGATCTACCGCTCGCCATGGGGAACAACGCAACCTCG
ACCCCCGATCTGTGTCTTCAGTCCGTGCAACCCCTATTGGAACACTTTGC
CAATCGCAGTGTTCGTCGCAATCAATCCCTGAAGTACACCCGCGGTTTGG
TCCATGGCAATGATGGTCCTTTGTCTTTCGATCACACCTTTGATCCAGCT
CAGGCTGCCTCCGTAAGCGACGGGTCTCGCTTGCGCAGACGAGTGCTCCG
GAAGAAACTGGGAGGCTCCATAGATAGCAATGATTACCCGTCTACCTCAA
GTTCGGAAACCAAAGAAGTCAACACTCCCAGAAGAGTCCAATCGCTTCGA
TTGGGCCCCATTGTCAGGTTGGAGAATGAGGACGGGATTCAGGTTCAATC
ACCTCTGTCGCCTACCGAAGAATTGAGCTCGCCAATAAGCATTCCGGGAT
CTCCTCGGGTGCGGAACATCCACGCCGTTAGCCGGTCTACCTCGACCTCT
CCAACAGGTCGTCGGCATTCATCTGCTGCTCCGCATATCGGAGAGGCCAT
GCTGTCCGGATTGGCACGTTCCCGCTCTAATTCGACGGAAGATAACGAGG
AAGAGGACAGCGACAATGATAGCTATTTAGGAGATAATCCGATGATCTAT
TGTACCCCTCCTTCTCGTGGAGCCGTAGATCTCGAGGAAGAGATGCGTAA
AAGTCGCCGACCCTCCATATCCAAGTCGCGTTCCATGCATAGTCTTCCCT
TTTCACACGGGAGTGGAGCAGACAAACCTCCCACCGCCCGTGATGCCCGA
GGGCGATCGTTCCTCATGGGATCAGTCGGCCCCACCTCCTTATTAGGAAC
CGCCGAGTTGGAAAAGTGCTTCCCCGATCGAACCGTTCGGGTGTTTGTTG
GCACGTGGAACATGAATGGCAATTCTCCACCCAATCACTTGGCCGAGTTC
CTGTTACCTCAGCATCTAGAATACGTTCCAGACATTCTGGTGGTCTGCTC
GCAAGAGGCGTTTCCTGACCGACATGAATGGGAAGTCCGTCTCCAAGACA
CACTAGGTCCCACCCATGTGCTATATCACTCCTGTACTTTGGGTACCCTT
CACCAGGCCATCTTTTTGCGACGAGATCTCATCTGGTATTGTTCTATGCC
CGCCACGGAGCGCATCAATACCAGACCTGGGTCCCAATTTAAGACTAAAG
GCGCCATAGCTACGGGCTTTCTGATATTTGGCACGTCCTTCCTGTTCGTC
AATAGTCATTTAACAGCTCACGAAGAAAACATCAAAGACCGACTGAAAGA
TCTGAAACGCATCAATGCCATGCTCAGCCTCTCCAAATTTCTTCCCGTTC
GAAGTGGAGCCTCTCGACACAAGGACTTTTCTGACAAGTTCGACTTGGTC
TTTTGGTCGGGAGATCTCAATTTTCGGCTCGAGCAGGCCAGAGACTATGT
CATCCGGGAGGTGAAGGATGGAATGTCTGTGTTAGAGTTCGATCAACTCA
ACTACTTGCGAAAGGAAGGCCTGGTGTTTCAAGGCTACAAGGAATGCTCC
ATCAATTTTCAACCCACCTTCAAGTACGATGTGGGAACGGACATTTTTGA
CACCTCCTACAAACAGAGGACACCGTCATATACGGATCGAATCCTCTTTA
AGCATTCACATTCCACTCGGGTGAAGTCGCTCTACTATGACAGTGTGCAA
GGCGTGCTCACGTCGGATCATAAGCCAGTATGGGGAATGTGGGAGGTGCA
AATTCGTCCGGGCAGGGACTCTATCCATTTGGCTGGTGGCCTCTTTAATC
GCGAAGTCTACCTCGACGGATTGAAGCGAAGAGCCGAAGCATTGCAGCCG
GTCCTGTCCGGCAAAAGCTCTACTTATATGTGCATAATCCAATGAAACCA
ATACCTACCCACTTTGTTTGTTCATCGAATTACCTATTATCATGGTTCTA
GGCTTGTTATGAAGGACTTATAATCTCAAGAAATAAACGAGCAATTTTGT
CAAGATTACCTTGAATGAACTACACACATACAGCGTACATGGACAGCCCC
GATTATTCTTTATTCAAAAAAACAACGAAATCACGTAAAGCCGCCACCGT
TCCGTATGGGTAATGAATCTAATGGAAAATTTCTTTTTTAGTTCTTGACC
ATCGCACGGTTGATTGGTTTTGTATTGATGGTTTTGTCCAATCTTTGCAT
GTGGCAGCTTTTCAACAGAGCTCTGCAAATATCCTCTACCACCCTCGAGG
CCTCCCTCATCACAACAGCCTCCAACTTGCTGCTCAGTGTAAGTCCAGCC
TCAATCTAATTGTCTGGCCCTTCTTCAAAGGGGTCAGATTCGCCTGGGCA
TACGTATATGTAGTAGATTTAATGTTTTTCGATTCTTGTCCCGATGATGT
GATGTCGTTATGCTTCATATTTTAGGGTGTGCTGGGTCATATATTTCTCT
CAGAAATTTTAAGTTTGACTTGGTGGCTTGGAACGGGACTAATTCTTACG
GGAATTGCCTTGATTTCCACCCAAGAACCCAGTGAATCCAAGAAAGACGA
TTAACATTCAAACCATGACCTCGGAGAGCATTGTCGAATCACCATCTTCC
GCTCCCTCGGGCAAGCAACTATTACGAGGCTGGCTTAATAAGCATCTCAA
GATCGTTCTCAGCGATGGACGGATTCTTGTGGGCGTGTTTCTTTGCACGG
ATCAAAACGCCAATGTCATTCTCGGCTCTTGCACCGAGAGTACTCCCGAG
CAGGAAGAAGGGAGCGAACCCAGGATTCTGGGCTTAGCCATGGTGCCTGG
TAGGCACATTGTGTCCGTTCATGTGGATGAGCCGGACTCTAATCACATA

Synonyms

The feature 'lsm domain-containing protein 1' has the following synonyms


Synonym
Tk10552

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