troponin c isoform 4, maker-scaffold397_size184017-snap-gene-0.33 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of troponin c isoform 4 vs. L. salmonis genes
Match: EMLSAG00000005879 (supercontig:LSalAtl2s:LSalAtl2s318:522663:523631:-1 gene:EMLSAG00000005879 transcript:EMLSAT00000005879 description:"augustus_masked-LSalAtl2s318-processed-gene-4.3") HSP 1 Score: 167.548 bits (423), Expect = 3.159e-52 Identity = 88/145 (60.69%), Postives = 108/145 (74.48%), Query Frame = 0 Query: 136 FSVSDYDTCGLEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 S + D GL+ EQV LKR FD F +D+ G+I + V IL MMG+ V +L+DII+EIDED SG LEF EF QL+A+FLIEEDEE +K ELKEAFRIYDK GNGYI+T L+EILRE+D L D+++ II+EVDEDGSGT Sbjct: 5 LSQEEMDAMGLDTEQVHVLKRCFDGF-ADEDGAIPADNVGNILSMMGLKVKPASLKDIIEEIDEDGSGLLEFGEFCQLSARFLIEEDEEALKKELKEAFRIYDKEGNGYISTETLREILRELDNKLTSDDIDGIIEEVDEDGSGT 148
BLAST of troponin c isoform 4 vs. L. salmonis genes
Match: EMLSAG00000007651 (supercontig:LSalAtl2s:LSalAtl2s443:420476:476013:-1 gene:EMLSAG00000007651 transcript:EMLSAT00000007651 description:"maker-LSalAtl2s443-snap-gene-4.40") HSP 1 Score: 145.206 bits (365), Expect = 1.163e-43 Identity = 77/136 (56.62%), Postives = 98/136 (72.06%), Query Frame = 0 Query: 145 GLEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 GLE +QV+ L + F+ F + G + E V IL+MMG+ V +AL+ II+E+DED SG LEF EF LAA+FLIEEDEEQM+ ELKEAFR YDK G GY+T LK IL E++ L ++ L EI++EVDEDGSGT Sbjct: 14 GLEPDQVEVLMKCFNGFC--QEGVVQAETVGEILQMMGLRVKQQALQAIIEEVDEDGSGELEFEEFCILAARFLIEEDEEQMRKELKEAFRFYDKEGVGYLTIETLKGILLELEPKLTDEQLMEIVEEVDEDGSGT 147
BLAST of troponin c isoform 4 vs. L. salmonis genes
Match: EMLSAG00000007153 (supercontig:LSalAtl2s:LSalAtl2s403:109735:110241:1 gene:EMLSAG00000007153 transcript:EMLSAT00000007153 description:"augustus_masked-LSalAtl2s403-processed-gene-1.0") HSP 1 Score: 130.568 bits (327), Expect = 6.374e-38 Identity = 76/140 (54.29%), Postives = 99/140 (70.71%), Query Frame = 0 Query: 142 DTCGLEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEE-DEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 D GLE +++K LK F+ FD +S + ++ IL+ MG S L++I++EIDED SG +EF EF QL AKFLIEE DEE MK ELKEAFR+YDK NG+ITT L+EI+ E+D L D+L+ II+E+DEDGSGT Sbjct: 17 DVTGLETDEIKVLKICFNMFDVKDQAFLSADDLDDILRGMGFRPSKEELKEILEEIDEDGSGEIEFEEFCQLCAKFLIEEPDEETMKAELKEAFRVYDKEANGFITTDQLREIISELDQRLTVDDLDGIIEEIDEDGSGT 156
BLAST of troponin c isoform 4 vs. L. salmonis genes
Match: EMLSAG00000003476 (supercontig:LSalAtl2s:LSalAtl2s18:1777138:1777861:-1 gene:EMLSAG00000003476 transcript:EMLSAT00000003476 description:"maker-LSalAtl2s18-augustus-gene-17.20") HSP 1 Score: 124.405 bits (311), Expect = 1.916e-35 Identity = 75/154 (48.70%), Postives = 104/154 (67.53%), Query Frame = 0 Query: 132 TSSNFSVSDYD----TCGLEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEE-DEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 ++NF D++ LE +++K LK F+ FD K + + ++ IL+ MG S L++I++EIDED SG +EF EF QL AKFL+EE DEE MK ELKEAFR+YDK G G+ITT L+EI+ E+D L ++L+ II+E+DEDGSGT Sbjct: 12 AANNFEGIDFEEISEATALETDEIKVLKLCFNLFDVRKQDFLGADDLDDILRAMGFRPSKEELKEILEEIDEDGSGEIEFGEFCQLCAKFLVEEPDEETMKAELKEAFRVYDKDGAGFITTDQLREIIAELDPRLTGEDLDGIIEEIDEDGSGT 165
BLAST of troponin c isoform 4 vs. L. salmonis genes
Match: EMLSAG00000005578 (supercontig:LSalAtl2s:LSalAtl2s2:1932686:1933237:-1 gene:EMLSAG00000005578 transcript:EMLSAT00000005578 description:"maker-LSalAtl2s2-augustus-gene-19.6") HSP 1 Score: 108.612 bits (270), Expect = 8.242e-30 Identity = 65/136 (47.79%), Postives = 95/136 (69.85%), Query Frame = 0 Query: 145 GLEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 GL+ QV++L++ F+ ++ +I E++ T +KM+G++V+ + D ++E D +F +A++F+ EED E+M+ ELKEAFRIYD+ GNGYITTGVLKEIL+EID +L + LE II EVDEDGSGT Sbjct: 3 GLDLLQVESLQKAFEVCGQNEE-TIDTELLVTSIKMLGVNVTKAGVMDAVEESGLDPEAKFNLEQFCFIASRFINEEDVEEMREELKEAFRIYDREGNGYITTGVLKEILKEIDPSLTAEQLEGIIQEVDEDGSGT 137
BLAST of troponin c isoform 4 vs. L. salmonis genes
Match: EMLSAG00000007325 (supercontig:LSalAtl2s:LSalAtl2s412:129788:148284:-1 gene:EMLSAG00000007325 transcript:EMLSAT00000007325 description:"maker-LSalAtl2s412-augustus-gene-1.21") HSP 1 Score: 88.9669 bits (219), Expect = 3.080e-22 Identity = 47/134 (35.07%), Postives = 80/134 (59.70%), Query Frame = 0 Query: 146 LEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSG 279 L EQV L+ F++FD D SG+I+ + + ++ MGM+ + + L ++I E D D SG +EFPEF + A + ++E+M ++ AFR+ D+ G+G IT+ + ++ I L+ +E +I E D+DG G Sbjct: 6 LTREQVAELREAFNEFDDDGSGTITTQELGYAMRAMGMNPTEQELLELINEFDTDGSGQIEFPEFCNMMAMKTGQANDEEM---VRMAFRVLDRDGSGTITSAEFRHLMTNIGDKLSATEVEMLIGEADKDGDG 136
BLAST of troponin c isoform 4 vs. L. salmonis genes
Match: EMLSAG00000006985 (supercontig:LSalAtl2s:LSalAtl2s397:377196:491552:1 gene:EMLSAG00000006985 transcript:EMLSAT00000006985 description:"maker-LSalAtl2s397-snap-gene-5.15") HSP 1 Score: 86.2705 bits (212), Expect = 3.434e-21 Identity = 44/134 (32.84%), Postives = 82/134 (61.19%), Query Frame = 0 Query: 146 LEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSG 279 L EEQ+ K F FD D G+I+ + + T+++ +G + + L+++I E+D D +GS+EF EF+ + AK + + + ++KEAFR++D+ G+GYI+ +++ + L+ + ++E+I E D DG G Sbjct: 6 LTEEQIAEFKEAFLLFDKDGDGTITTKELATVMRSLGQNPTEAELQEMINEVDADGNGSIEFEEFLAMMAKKV---KDNESSSDIKEAFRVFDRDGDGYISAEEXHQVMSTLGENLSSEEIDEMIREADLDGDG 136 HSP 2 Score: 50.447 bits (119), Expect = 4.517e-8 Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 0 Query: 223 EEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 EEQ+ E KEAF ++DK G+G ITT L ++R + E L+E+I+EVD DG+G+ Sbjct: 8 EEQI-AEFKEAFLLFDKDGDGTITTKELATVMRSLGQNPTEAELQEMINEVDADGNGS 64
BLAST of troponin c isoform 4 vs. L. salmonis genes
Match: EMLSAG00000008774 (supercontig:LSalAtl2s:LSalAtl2s545:134602:142913:1 gene:EMLSAG00000008774 transcript:EMLSAT00000008774 description:"augustus_masked-LSalAtl2s545-processed-gene-1.3") HSP 1 Score: 85.8853 bits (211), Expect = 8.624e-21 Identity = 46/134 (34.33%), Postives = 77/134 (57.46%), Query Frame = 0 Query: 146 LEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSG 279 L ++++ K FD FD ++ G+IS + ++ ++ G + + ++D+I E+D D SG LEFPEF + K L + D+E ELKE FR++ K G IT LK +L + + ++E+I VD++G G Sbjct: 5 LRPDELQAFKAAFDMFDKNQDGTISTKELHAAMRRAGQNPTEAEVQDMINEVDVDGSGYLEFPEFCMMMHKKLNDGDQEN---ELKEVFRVFGKDETGCITAEELKFVLTHLPGKVTYKEIDEMIRTVDQNGDG 135
BLAST of troponin c isoform 4 vs. L. salmonis genes
Match: EMLSAG00000002767 (supercontig:LSalAtl2s:LSalAtl2s15:378667:382347:1 gene:EMLSAG00000002767 transcript:EMLSAT00000002767 description:"maker-LSalAtl2s15-augustus-gene-3.6") HSP 1 Score: 85.1149 bits (209), Expect = 1.576e-20 Identity = 46/155 (29.68%), Postives = 83/155 (53.55%), Query Frame = 0 Query: 146 LEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDE---------------------SGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSG 279 L EEQ+ K F FD D G+I+ + + T+++ +G + + L+D+I E+D D +G+++FPEF+ + A + E+ E++EAFR++DK GNG+I+ L+ ++ + L ++ ++E+I E D DG G Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGEXPFPRQSPPMLYHSLSLYLCNGTIDFPEFLTMMAXKMKXTXSEE---EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDG 155
BLAST of troponin c isoform 4 vs. L. salmonis genes
Match: EMLSAG00000007204 (supercontig:LSalAtl2s:LSalAtl2s404:411131:411583:1 gene:EMLSAG00000007204 transcript:EMLSAT00000007204 description:"augustus_masked-LSalAtl2s404-processed-gene-4.7") HSP 1 Score: 83.9593 bits (206), Expect = 2.203e-20 Identity = 46/132 (34.85%), Postives = 74/132 (56.06%), Query Frame = 0 Query: 149 EQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 E++ F+ +D D G I+ + IL +G + + L+D+ +D D SG+++ PEFIQ AK L + E E+ EAF+++DK GNG I++ LK ++ I L +D +E +I E D DG G+ Sbjct: 10 EEISRFLEAFNLYDDDSDGVITTSQLGKILHYLGQNPTEAELQDLYLSMDTDGSGTIDLPEFIQSMAKRLARNNFED---EITEAFKVFDKDGNGLISSNELKCVMSNIGEILKDDEVEALIKEADVDGDGS 138
BLAST of troponin c isoform 4 vs. SwissProt
Match: gi|136030|sp|P21797.1|TNNC1_BALNU (RecName: Full=Troponin C, isoform 1) HSP 1 Score: 175.637 bits (444), Expect = 3.715e-54 Identity = 90/137 (65.69%), Postives = 106/137 (77.37%), Query Frame = 0 Query: 144 CGLEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 GLE+EQ+ L+R FD FD DK G IS E V+ IL+MMG+ VSS + + II+EIDED SG +EF EF+QLAAKFLIEEDEE M ELKEAFR+YDK GNGYITT LKEIL E+DA L + L II+E+DEDGSGT Sbjct: 10 TGLEKEQIVVLRRAFDSFDRDKKGYISPETVSDILRMMGIKVSSTSFKQIIEEIDEDGSGQIEFSEFLQLAAKFLIEEDEEAMMKELKEAFRLYDKEGNGYITTQTLKEILHELDARLTAEELVGIIEEIDEDGSGT 146
BLAST of troponin c isoform 4 vs. SwissProt
Match: gi|136031|sp|P29289.1|TNNC1_HOMAM (RecName: Full=Troponin C, isoform 1) HSP 1 Score: 166.007 bits (419), Expect = 1.689e-50 Identity = 83/135 (61.48%), Postives = 104/135 (77.04%), Query Frame = 0 Query: 146 LEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 L+E+QV+ L++ F+ FD+D G I+ + V IL+MMG+ +S R L+++I E DED SG +EF EF LAAKFL EEDEE +K ELKEAFRIYD+ GNGYIT LKEILRE+D L EDNL+ II+EVDEDGSGT Sbjct: 4 LDEDQVQALQKAFNSFDTDDKGFITPDTVGVILRMMGVKISDRHLQEVISETDEDGSGEIEFEEFAALAAKFLSEEDEEALKKELKEAFRIYDRGGNGYITVHTLKEILRELDNKLTEDNLDSIIEEVDEDGSGT 138
BLAST of troponin c isoform 4 vs. SwissProt
Match: gi|19860033|sp|P47947.2|TNNC1_DROME (RecName: Full=Troponin C, isoform 1) HSP 1 Score: 157.532 bits (397), Expect = 3.744e-47 Identity = 78/135 (57.78%), Postives = 98/135 (72.59%), Query Frame = 0 Query: 146 LEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 L +EQ L+ F+ FD +K+G I+ MV TIL M+G + L DII E+DED SG +EF EF LAA+FL+EED E M ELKEAFR+YDK GNGYITTGVL+EILRE+D L D+L+ +I+E+D DGSGT Sbjct: 5 LTKEQTALLRNAFNAFDPEKNGYINTAMVGTILSMLGHQLDDATLADIIAEVDEDGSGQIEFEEFTTLAARFLVEEDAEAMMAELKEAFRLYDKEGNGYITTGVLREILRELDDKLTNDDLDMMIEEIDSDGSGT 139
BLAST of troponin c isoform 4 vs. SwissProt
Match: gi|136032|sp|P06708.1|TNNC2_ASTLP (RecName: Full=Troponin C, isotype gamma) HSP 1 Score: 155.992 bits (393), Expect = 1.768e-46 Identity = 87/135 (64.44%), Postives = 107/135 (79.26%), Query Frame = 0 Query: 146 LEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 L+EEQ+ LK+ FD FD+D G I+ E V IL+MMG+ +S + L+ +I E DED SG LEF EF++LAAKFLIEEDEE +K ELKEAFRIYDK G+GYITT VL+EILRE+D L ED+L+ II+EVDEDGSGT Sbjct: 4 LDEEQLSALKKAFDSFDTDSKGFITPETVGVILRMMGVKISEKNLQQVIAETDEDGSGELEFEEFVELAAKFLIEEDEEALKAELKEAFRIYDKGGDGYITTDVLREILRELDNRLTEDDLDGIIEEVDEDGSGT 138
BLAST of troponin c isoform 4 vs. SwissProt
Match: gi|136034|sp|P29290.1|TNNCA_HOMAM (RecName: Full=Troponin C, isoform 2A) HSP 1 Score: 155.992 bits (393), Expect = 1.768e-46 Identity = 85/135 (62.96%), Postives = 108/135 (80.00%), Query Frame = 0 Query: 146 LEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 L+EEQ+ L++ FD FD+D G I+ E V IL+MMG+ +S + L+++I E DED SG LEF EF++LAAKFLIEEDEE +K EL+EAFR+YDK GNGYITT VLKEILRE+D L E++L+ II+EVDEDGSGT Sbjct: 4 LDEEQIGALQKAFDSFDTDSKGFITPETVGVILRMMGVKISEKNLQEVIAETDEDGSGELEFEEFVELAAKFLIEEDEEALKTELREAFRVYDKEGNGYITTDVLKEILRELDNRLTEEDLDSIIEEVDEDGSGT 138
BLAST of troponin c isoform 4 vs. SwissProt
Match: gi|14286181|sp|P47949.2|TNNC3_DROME (RecName: Full=Troponin C, isoform 3) HSP 1 Score: 154.836 bits (390), Expect = 5.955e-46 Identity = 74/132 (56.06%), Postives = 100/132 (75.76%), Query Frame = 0 Query: 149 EQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 EQ+ L++ F+ FD K+GSI EMV IL++MG + LE++I+E+DED+SG LEF EF+QLAAKF++EED E M+ EL+EAFR+YDK GNG+I T LKEIL+E+D L E L+ +I+E+D DGSGT Sbjct: 11 EQIAVLQKAFNSFDHQKTGSIPTEMVADILRLMGQPFDKKILEELIEEVDEDKSGRLEFGEFVQLAAKFIVEEDAEAMQKELREAFRLYDKQGNGFIPTTCLKEILKELDDQLTEQELDIMIEEIDSDGSGT 142
BLAST of troponin c isoform 4 vs. SwissProt
Match: gi|68068004|sp|P47948.2|TNNC2_DROME (RecName: Full=Troponin C, isoform 2) HSP 1 Score: 154.451 bits (389), Expect = 7.719e-46 Identity = 74/132 (56.06%), Postives = 100/132 (75.76%), Query Frame = 0 Query: 149 EQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 EQ+ L++ F+ FD K+GSI EMV IL++MG + L+++I E+DED+SG LEF EF+QLAAKF++EED+E M+ EL+EAFR+YDK GNGYI T LKEIL+E+D L E L+ +I+E+D DGSGT Sbjct: 11 EQIAVLQKAFNSFDHQKTGSIPTEMVADILRLMGQPFDRQILDELIDEVDEDKSGRLEFEEFVQLAAKFIVEEDDEAMQKELREAFRLYDKQGNGYIPTSCLKEILKELDDQLTEQELDIMIEEIDSDGSGT 142
BLAST of troponin c isoform 4 vs. SwissProt
Match: gi|136035|sp|P29291.1|TNNCB_HOMAM (RecName: Full=Troponin C, isoform 2B) HSP 1 Score: 152.525 bits (384), Expect = 2.940e-45 Identity = 83/135 (61.48%), Postives = 107/135 (79.26%), Query Frame = 0 Query: 146 LEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 L+ EQ+ L++ FD FD+D G I+ E V IL+MMG+ +S + L+++I E DED SG LEF EF++LAAKFLIEEDEE +K EL+EAFR+YD+ GNGYITT VLKEILRE+D L E++L+ II+EVDEDGSGT Sbjct: 4 LDAEQLSALQKAFDSFDTDSKGFITPETVGVILRMMGVKISEKNLQEVISETDEDGSGELEFEEFVELAAKFLIEEDEEALKAELREAFRVYDRGGNGYITTDVLKEILRELDNRLTEEDLDSIIEEVDEDGSGT 138
BLAST of troponin c isoform 4 vs. SwissProt
Match: gi|136033|sp|P21798.2|TNNC2_BALNU (RecName: Full=Troponin C, isoform 2) HSP 1 Score: 152.525 bits (384), Expect = 3.166e-45 Identity = 73/135 (54.07%), Postives = 103/135 (76.30%), Query Frame = 0 Query: 146 LEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 L+++Q+ LK+ FD FD +K G+I+ ++V TIL+MMG +++ L+++I E+D D SG LEF EF+ LAAKF+I++D E M ELKEAFR+YDK G GYI T LK+IL+E+D TLN ++L+ II E+D DGSGT Sbjct: 5 LDKDQIAMLKKAFDGFDHEKKGAINCDVVATILRMMGQAYNAQTLKELIDEVDADGSGMLEFEEFVTLAAKFIIDDDAEAMAKELKEAFRLYDKAGKGYIPTSALKDILKELDETLNAEDLDNIIGEIDTDGSGT 139
BLAST of troponin c isoform 4 vs. SwissProt
Match: gi|136029|sp|P06707.1|TNNC1_ASTLP (RecName: Full=Troponin C, isotype alpha) HSP 1 Score: 151.754 bits (382), Expect = 7.945e-45 Identity = 85/135 (62.96%), Postives = 106/135 (78.52%), Query Frame = 0 Query: 146 LEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 L+EEQV L++ FD FD+D G I+ E V IL+MMG+ +S R L+ +I E DED SG +EF EF +LAAKFL EEDEE +K ELKEAFRIYD+ G+GYITT VL+EIL+E+D L EDNL+EII+E+DEDGSGT Sbjct: 4 LDEEQVSALQKAFDSFDTDSKGFITPETVGIILRMMGVKISERHLQQVISETDEDGSGEIEFEEFAELAAKFLSEEDEEALKKELKEAFRIYDRGGDGYITTQVLREILKELDNRLTEDNLDEIIEEIDEDGSGT 138
BLAST of troponin c isoform 4 vs. nr
Match: gi|239949539|gb|ACS36544.1| (troponin C isoform 4' [Homarus americanus]) HSP 1 Score: 180.259 bits (456), Expect = 1.535e-53 Identity = 88/136 (64.71%), Postives = 112/136 (82.35%), Query Frame = 0 Query: 145 GLEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 GL++ QV+ L++ FD FD+DK G+IS + V+TIL+MMG+ +S + L+++I E+DED+SG LEF EF LAAKFLIEEDEE +K ELKEAFRIYDK G+GYITT LKEILRE+D L E++L+ IIDEVDEDGSGT Sbjct: 8 GLDKVQVEGLRKAFDAFDTDKKGAISTDTVSTILRMMGVKISEKNLQEVISEVDEDDSGELEFEEFCALAAKFLIEEDEESLKTELKEAFRIYDKQGDGYITTQTLKEILRELDNKLTEEDLDGIIDEVDEDGSGT 143
BLAST of troponin c isoform 4 vs. nr
Match: gi|356713486|gb|AET36897.1| (troponin C2 [Litopenaeus vannamei]) HSP 1 Score: 179.104 bits (453), Expect = 4.400e-53 Identity = 89/135 (65.93%), Postives = 111/135 (82.22%), Query Frame = 0 Query: 146 LEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 L++ Q+ L++ FD FD+DK G+I+VE ++TIL+MMG+ VS + L++II E+DED SG LEF EF LAAKFLIEEDEE +K ELKEAFRIYDK G+GYITT VLKEILRE+D L E++L+ IIDEVDEDGSGT Sbjct: 9 LDKGQIXGLRKAFDAFDTDKKGAINVETISTILRMMGVKVSEKNLQEIIAEVDEDGSGELEFEEFCALAAKFLIEEDEESLKAELKEAFRIYDKQGDGYITTKVLKEILRELDNKLXEEDLDGIIDEVDEDGSGT 143
BLAST of troponin c isoform 4 vs. nr
Match: gi|136030|sp|P21797.1|TNNC1_BALNU (RecName: Full=Troponin C, isoform 1) HSP 1 Score: 175.637 bits (444), Expect = 1.152e-51 Identity = 90/137 (65.69%), Postives = 106/137 (77.37%), Query Frame = 0 Query: 144 CGLEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 GLE+EQ+ L+R FD FD DK G IS E V+ IL+MMG+ VSS + + II+EIDED SG +EF EF+QLAAKFLIEEDEE M ELKEAFR+YDK GNGYITT LKEIL E+DA L + L II+E+DEDGSGT Sbjct: 10 TGLEKEQIVVLRRAFDSFDRDKKGYISPETVSDILRMMGIKVSSTSFKQIIEEIDEDGSGQIEFSEFLQLAAKFLIEEDEEAMMKELKEAFRLYDKEGNGYITTQTLKEILHELDARLTAEELVGIIEEIDEDGSGT 146
BLAST of troponin c isoform 4 vs. nr
Match: gi|298106306|gb|ADI56266.1| (troponin C isoform 3 [Homarus americanus]) HSP 1 Score: 170.629 bits (431), Expect = 1.057e-49 Identity = 82/135 (60.74%), Postives = 110/135 (81.48%), Query Frame = 0 Query: 146 LEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 LE +Q++ L++ FD FD+D G+I+ + V+TIL+MMG+ +S + L+++I E DED SG L+F EF++LAAKFLIEEDEE + ELKEAFR+YDK G+GYITT VLKEILRE+D L E++L+ II+EVDEDGSGT Sbjct: 4 LEADQIEALQKAFDSFDTDGKGAITTDTVSTILRMMGVKISEKNLQEVIAETDEDGSGELKFEEFVELAAKFLIEEDEEALNTELKEAFRLYDKGGDGYITTDVLKEILRELDNRLTEEDLDNIIEEVDEDGSGT 138
BLAST of troponin c isoform 4 vs. nr
Match: gi|225718472|gb|ACO15082.1| (Troponin C, isoform 1 [Caligus clemensi]) HSP 1 Score: 169.474 bits (428), Expect = 4.014e-49 Identity = 90/148 (60.81%), Postives = 110/148 (74.32%), Query Frame = 0 Query: 133 SSNFSVSDYDTCGLEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 S S + D GL++EQV LKR FD F SD+ G+I + V IL MMG+ V AL+DII+EIDED SG LEF EF QL+A+FLIEEDEE +K ELKEAFRIYDK GNGYI+T L+EIL+E+D L D+++ II+EVDEDGSGT Sbjct: 2 SDLLSQEEMDDLGLDQEQVSVLKRCFDGF-SDEDGAIPADNVGNILSMMGLKVKPAALKDIIEEIDEDGSGLLEFGEFCQLSARFLIEEDEEALKKELKEAFRIYDKEGNGYISTETLREILKELDNKLTSDDIDGIIEEVDEDGSGT 148
BLAST of troponin c isoform 4 vs. nr
Match: gi|1325324438|ref|XP_023344064.1| (troponin C-like [Eurytemora affinis]) HSP 1 Score: 169.088 bits (427), Expect = 4.378e-49 Identity = 83/137 (60.58%), Postives = 106/137 (77.37%), Query Frame = 0 Query: 144 CGLEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 GL++EQV TLK+ FD FD +K G+I+ E TIL+MMG+ VS L+ I+++IDED SG LEF EF+ L+A+FL+EEDEE +K ELK+AFRIYDK NGYITTG LKEIL E+D L ++ L II+E+DEDGSGT Sbjct: 12 VGLDKEQVLTLKKAFDAFDHEKKGAITTETTGTILRMMGLKVSHEGLKAIVEDIDEDGSGQLEFEEFVMLSARFLVEEDEEALKKELKDAFRIYDKERNGYITTGTLKEILHELDPKLTQEELNGIIEEIDEDGSGT 148
BLAST of troponin c isoform 4 vs. nr
Match: gi|225713568|gb|ACO12630.1| (Troponin C, isoform 1 [Lepeophtheirus salmonis] >gi|225713648|gb|ACO12670.1| Troponin C, isoform 1 [Lepeophtheirus salmonis] >gi|290462903|gb|ADD24499.1| Troponin C, isoform 1 [Lepeophtheirus salmonis] >gi|290561539|gb|ADD38170.1| Troponin C, isoform 1 [Lepeophtheirus salmonis]) HSP 1 Score: 167.548 bits (423), Expect = 2.062e-48 Identity = 88/145 (60.69%), Postives = 108/145 (74.48%), Query Frame = 0 Query: 136 FSVSDYDTCGLEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 S + D GL+ EQV LKR FD F +D+ G+I + V IL MMG+ V +L+DII+EIDED SG LEF EF QL+A+FLIEEDEE +K ELKEAFRIYDK GNGYI+T L+EILRE+D L D+++ II+EVDEDGSGT Sbjct: 5 LSQEEMDAMGLDTEQVHVLKRCFDGF-ADEDGAIPADNVGNILSMMGLKVKPASLKDIIEEIDEDGSGLLEFGEFCQLSARFLIEEDEEALKKELKEAFRIYDKEGNGYISTETLREILRELDNKLTSDDIDGIIEEVDEDGSGT 148
BLAST of troponin c isoform 4 vs. nr
Match: gi|225709854|gb|ACO10773.1| (Troponin C, isoform 1 [Caligus rogercresseyi] >gi|225710444|gb|ACO11068.1| Troponin C, isoform 1 [Caligus rogercresseyi]) HSP 1 Score: 166.777 bits (421), Expect = 4.169e-48 Identity = 89/148 (60.14%), Postives = 109/148 (73.65%), Query Frame = 0 Query: 133 SSNFSVSDYDTCGLEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 S S + D GL+ EQV LKR FD F SD+ G+I + V IL MMG+ V AL++II+EIDED SG LEF EF QL+A+FLIEEDEE +K ELKEAFRIYDK GNGYI+T L+EIL+E+D L D+++ II+EVDEDGSGT Sbjct: 2 SDLLSQEEMDDMGLDSEQVSVLKRCFDGF-SDEDGAIPADNVGNILSMMGLKVKPAALKNIIEEIDEDGSGLLEFGEFCQLSARFLIEEDEEALKKELKEAFRIYDKEGNGYISTETLREILKELDNKLTSDDIDGIIEEVDEDGSGT 148
BLAST of troponin c isoform 4 vs. nr
Match: gi|136031|sp|P29289.1|TNNC1_HOMAM (RecName: Full=Troponin C, isoform 1 >gi|237457|gb|AAA03250.1| troponin C isoform 1, TnC-1 [lobsters, Peptide, 150 aa] >gi|239949529|gb|ACS36539.1| troponin C isoform 1 [Homarus americanus]) HSP 1 Score: 166.007 bits (419), Expect = 5.236e-48 Identity = 83/135 (61.48%), Postives = 104/135 (77.04%), Query Frame = 0 Query: 146 LEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 L+E+QV+ L++ F+ FD+D G I+ + V IL+MMG+ +S R L+++I E DED SG +EF EF LAAKFL EEDEE +K ELKEAFRIYD+ GNGYIT LKEILRE+D L EDNL+ II+EVDEDGSGT Sbjct: 4 LDEDQVQALQKAFNSFDTDDKGFITPDTVGVILRMMGVKISDRHLQEVISETDEDGSGEIEFEEFAALAAKFLSEEDEEALKKELKEAFRIYDRGGNGYITVHTLKEILRELDNKLTEDNLDSIIEEVDEDGSGT 138
BLAST of troponin c isoform 4 vs. nr
Match: gi|1151052840|gb|AQV08182.1| (troponin C [Palaemon carinicauda]) HSP 1 Score: 164.851 bits (416), Expect = 1.687e-47 Identity = 81/135 (60.00%), Postives = 106/135 (78.52%), Query Frame = 0 Query: 146 LEEEQVKTLKRTFDQFDSDKSGSISVEMVNTILKMMGMHVSSRALEDIIQEIDEDESGSLEFPEFIQLAAKFLIEEDEEQMKWELKEAFRIYDKHGNGYITTGVLKEILREIDATLNEDNLEEIIDEVDEDGSGT 280 LEE+Q++ L++ FD FD++K G I+ + + TIL+MMG+ +S + L ++I E DED SG LEF EF+ LAAKFLIEEDEE +K EL+EAFRIYDK G G+ITT VL+EIL EID L ++L+ II+EVDEDGSGT Sbjct: 4 LEEDQIEALRKAFDSFDTEKQGFITADTIATILRMMGVKISEKNLAEVIAETDEDGSGQLEFEEFVDLAAKFLIEEDEEALKAELREAFRIYDKEGQGFITTDVLREILSEIDNKLTPEDLDGIIEEVDEDGSGT 138 The following BLAST results are available for this feature:
BLAST of troponin c isoform 4 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 19
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BLAST of troponin c isoform 4 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of troponin c isoform 4 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold397_size184017:34560..41520+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold397_size184017-snap-gene-0.33 ID=maker-scaffold397_size184017-snap-gene-0.33|Name=troponin c isoform 4|organism=Tigriopus kingsejongensis|type=gene|length=6961bp|location=Sequence derived from alignment at scaffold397_size184017:34560..41520+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'troponin c isoform 4' has the following synonyms
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