gamma-tubulin complex component 4- partial, maker-scaffold631_size122145-snap-gene-0.41 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of gamma-tubulin complex component 4- partial vs. L. salmonis genes
Match: EMLSAG00000000056 (supercontig:LSalAtl2s:LSalAtl2s100:140600:144144:1 gene:EMLSAG00000000056 transcript:EMLSAT00000000056 description:"maker-LSalAtl2s100-augustus-gene-1.35") HSP 1 Score: 98.9821 bits (245), Expect = 3.009e-25 Identity = 63/141 (44.68%), Postives = 80/141 (56.74%), Query Frame = 0 Query: 12 MLHELLLALSGHQGQVFASWGENKIKVNEALGLFHPCELSLLNELLCLASELREIQTFIAQRRDQSSSRKSDGEDLHGLYAEALCEGLEQVLLPYRTALIDLERRILEDGRIQLSHIQHELSPYQILL-------PSLTKL 145 MLHE+L AL+G++G VF + + KVN AL LFHP E +L +L L + I TFI + +S S GLY EALCEGL+ VL YR AL LE+ IL D IQLSH H L P+ +L P+L K+ Sbjct: 1 MLHEILFALNGNEGNVF-TLDNGRFKVNSALPLFHPSETRVLENILELGEKYWRICTFIKSQEIRSESS--------GLYMEALCEGLDSVLESYRGALRALEKSILFDETIQLSHFSHVLRPFAPVLTCTLQLNPTLQKI 132
BLAST of gamma-tubulin complex component 4- partial vs. SwissProt
Match: gi|22095730|sp|Q9UGJ1.1|GCP4_HUMAN (RecName: Full=Gamma-tubulin complex component 4; Short=GCP-4; Short=hGCP4; AltName: Full=Gamma-ring complex protein 76 kDa; Short=h76p; Short=hGrip76) HSP 1 Score: 103.605 bits (257), Expect = 2.583e-25 Identity = 55/143 (38.46%), Postives = 83/143 (58.04%), Query Frame = 0 Query: 12 MLHELLLALSGHQGQVFASWGENKIKVNEALGLFHPCELSLLNELLCLASELREIQTFI------AQRRDQSSSRKSDGEDLHGLYAEALCEGLEQVLLPYRTALIDLERRILEDGRIQLSHIQHELSPYQILLPSLTKLIRQ 148 M+HELLLALSG+ G +F + ++V++ HP E S+LN L L ++ FI Q++D S++ G LHG+Y A C GL+ VL PYR AL+DLE+ L D + +SH+ + L +Q+L PS+ ++ Q Sbjct: 1 MIHELLLALSGYPGSIFTWNKRSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQQQDHHPSQQGQG-GLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQ 142
BLAST of gamma-tubulin complex component 4- partial vs. SwissProt
Match: gi|22095727|sp|Q9D4F8.2|GCP4_MOUSE (RecName: Full=Gamma-tubulin complex component 4; Short=GCP-4) HSP 1 Score: 97.8265 bits (242), Expect = 2.322e-23 Identity = 53/142 (37.32%), Postives = 78/142 (54.93%), Query Frame = 0 Query: 12 MLHELLLALSGHQGQVFASWGENKIKVNEALGLFHPCELSLLNELLCLASELREIQTFIAQRRDQ----SSSRKSDGED-LHGLYAEALCEGLEQVLLPYRTALIDLERRILEDGRIQLSHIQHELSPYQILLPSLTKLIRQ 148 M+HELLLALSG+ G +F + ++V++ HP E S+LN L L ++ FI Q G+ LHG+Y A C GL+ VL PYR AL+DLE+ L D + +SH+ + L +Q+L PS+ ++ Q Sbjct: 1 MIHELLLALSGYPGSIFTWNKRSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQQQDHHPPQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLADPHLSISHVNYSLDQFQLLFPSVMVVVEQ 142
BLAST of gamma-tubulin complex component 4- partial vs. SwissProt
Match: gi|25452982|sp|Q9VKU7.2|GCP4_DROME (RecName: Full=Gamma-tubulin complex component 4 homolog; AltName: Full=Gamma-ring complex protein 75 kDa; Short=d75p; Short=dGrip75) HSP 1 Score: 51.2174 bits (121), Expect = 3.813e-7 Identity = 41/142 (28.87%), Postives = 65/142 (45.77%), Query Frame = 0 Query: 12 MLHELLLALSGHQGQVFASWGENKIKVNEALGLFHPCELSLLNELLCLASELREIQTFIAQRRDQSSSRKSDG-----EDLHGLYAEALCEGLEQVLLPYRTALIDLERRILEDGRIQLSHIQHELSPYQILLPSLTKLIRQ 148 M+H+LLLA H + N+ V + HPCE + +++ + +E++ F SS RKSD + LHG Y L +G+E L Y + LE+ L + R LS++ + L LL + LI + Sbjct: 1 MIHDLLLACRSHNPEQLGIKAFNETTVIDQF--IHPCEREIFMDIIKIIKVYQEVEQFT-----HSSGRKSDTHGELPDSLHGYYLLNLAKGIEMALEEYYAEIGRLEKYCLGNERNSLSYVYNALYAKFPLLVFMRNLITE 135
BLAST of gamma-tubulin complex component 4- partial vs. nr
Match: gi|562860790|ref|XP_006158772.1| (PREDICTED: gamma-tubulin complex component 4-like, partial [Tupaia chinensis]) HSP 1 Score: 105.916 bits (263), Expect = 2.134e-26 Identity = 56/143 (39.16%), Postives = 84/143 (58.74%), Query Frame = 0 Query: 12 MLHELLLALSGHQGQVFASWGENKIKVNEALGLFHPCELSLLNELLCLASELREIQTFI------AQRRDQSSSRKSDGEDLHGLYAEALCEGLEQVLLPYRTALIDLERRILEDGRIQLSHIQHELSPYQILLPSLTKLIRQ 148 M+HELLLALSG+ G +F + ++V++ L HP E S+LN L L ++ FI Q++D S++ G LHG+Y A C GL+ VL PYR AL+DLE+ L D + +SH+ + L +Q+L PS+ ++ Q Sbjct: 1 MIHELLLALSGYPGSIFTWNKRSGLQVSQDLPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQQQDHHPSQQGQG-GLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLADPHLSISHVNYSLDQFQLLFPSVMVVVEQ 142
BLAST of gamma-tubulin complex component 4- partial vs. nr
Match: gi|1316177880|ref|XP_023234494.1| (gamma-tubulin complex component 4-like isoform X1 [Centruroides sculpturatus]) HSP 1 Score: 110.153 bits (274), Expect = 1.089e-25 Identity = 58/135 (42.96%), Postives = 82/135 (60.74%), Query Frame = 0 Query: 12 MLHELLLALSGHQGQVFASWGENKIKVNEALGLFHPCELSLLNELLCLASELREIQTFIAQRRDQSSSRKSDGEDLHGLYAEALCEGLEQVLLPYRTALIDLERRILEDGRIQLSHIQHELSPYQILLPSLTKLI 146 MLHELLLAL G+ G +F E I+V + L HP E++LL+ L L + ++ Q FI + S + + ++LHGLY +A C GL+ VL PY L+ LE+ ILED + LSH QH+L YQ++ L +LI Sbjct: 1 MLHELLLALRGYPGNIFVDREEEGIQVLKGLSFLHPGEIALLDHLCLLGTNYKDFQEFINKY---SHGTQENEDNLHGLYVQAFCSGLQDVLNPYCQDLLALEKEILEDPYVPLSHFQHKLDKYQLMFSVLKQLI 132
BLAST of gamma-tubulin complex component 4- partial vs. nr
Match: gi|667275169|ref|XP_008572234.1| (PREDICTED: gamma-tubulin complex component 4-like isoform X2 [Galeopterus variegatus]) HSP 1 Score: 104.76 bits (260), Expect = 1.455e-25 Identity = 55/143 (38.46%), Postives = 83/143 (58.04%), Query Frame = 0 Query: 12 MLHELLLALSGHQGQVFASWGENKIKVNEALGLFHPCELSLLNELLCLASELREIQTFI------AQRRDQSSSRKSDGEDLHGLYAEALCEGLEQVLLPYRTALIDLERRILEDGRIQLSHIQHELSPYQILLPSLTKLIRQ 148 M+HELLLALSG+ G +F + ++V++ HP E S+LN L L ++ FI Q++D S++ G LHG+Y A C GL+ VL PYR AL+DLE+ L D + +SH+ + L +Q+L PS+ ++ Q Sbjct: 1 MIHELLLALSGYPGSIFTWNKRSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQQQDHHPSQQGQG-GLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLADPHLSISHVNYSLDQFQLLFPSVMVVVEQ 142
BLAST of gamma-tubulin complex component 4- partial vs. nr
Match: gi|1176089627|ref|XP_020615193.1| (LOW QUALITY PROTEIN: gamma-tubulin complex component 4-like [Orbicella faveolata]) HSP 1 Score: 109.383 bits (272), Expect = 7.962e-25 Identity = 61/140 (43.57%), Postives = 84/140 (60.00%), Query Frame = 0 Query: 12 MLHELLLALSGHQGQVFASWGENKIKVNEALGLFHPCELSLLNELLCLASELREIQTFIAQRRDQSSSRKSDG---EDLHGLYAEALCEGLEQVLLPYRTALIDLERRILEDGRIQLSHIQHELSPYQILLPSLTKLIRQ 148 MLHELLLALSG+ G F +KV L H E+ LLN + L S R+ QTF + + S + +G ++L GLY +A C GL+QVL YR LIDLE++ILED + L++++H L YQ+L P+L +I Q Sbjct: 1 MLHELLLALSGYSGGAFVHKEFAGLKVAADLPFIHGSEVDLLNRICKLGSYFRKFQTFCRKYSEVSPVIRDNGTIQQELFGLYIQAFCIGLDQVLDSYRKCLIDLEKQILEDPXVPLTYLEHSLEQYQVLFPALWTVIEQ 140
BLAST of gamma-tubulin complex component 4- partial vs. nr
Match: gi|667275166|ref|XP_008572233.1| (PREDICTED: gamma-tubulin complex component 4-like isoform X1 [Galeopterus variegatus]) HSP 1 Score: 104.76 bits (260), Expect = 9.517e-25 Identity = 55/143 (38.46%), Postives = 83/143 (58.04%), Query Frame = 0 Query: 12 MLHELLLALSGHQGQVFASWGENKIKVNEALGLFHPCELSLLNELLCLASELREIQTFI------AQRRDQSSSRKSDGEDLHGLYAEALCEGLEQVLLPYRTALIDLERRILEDGRIQLSHIQHELSPYQILLPSLTKLIRQ 148 M+HELLLALSG+ G +F + ++V++ HP E S+LN L L ++ FI Q++D S++ G LHG+Y A C GL+ VL PYR AL+DLE+ L D + +SH+ + L +Q+L PS+ ++ Q Sbjct: 1 MIHELLLALSGYPGSIFTWNKRSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQQQDHHPSQQGQG-GLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLADPHLSISHVNYSLDQFQLLFPSVMVVVEQ 142
BLAST of gamma-tubulin complex component 4- partial vs. nr
Match: gi|149692021|ref|XP_001503191.1| (gamma-tubulin complex component 4 [Equus caballus] >gi|664738922|ref|XP_008526750.1| PREDICTED: gamma-tubulin complex component 4 [Equus przewalskii]) HSP 1 Score: 107.457 bits (267), Expect = 3.544e-24 Identity = 56/143 (39.16%), Postives = 83/143 (58.04%), Query Frame = 0 Query: 12 MLHELLLALSGHQGQVFASWGENKIKVNEALGLFHPCELSLLNELLCLASELREIQTFI------AQRRDQSSSRKSDGEDLHGLYAEALCEGLEQVLLPYRTALIDLERRILEDGRIQLSHIQHELSPYQILLPSLTKLIRQ 148 M+HELLLALSG+ G +F N ++V++ HP E S+LN L L ++ FI Q++D S++ G LHG+Y A C GL+ VL PYR AL+DLE+ L D + +SH+ + L +Q+L PS+ ++ Q Sbjct: 1 MIHELLLALSGYPGSIFTWNKRNGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQQQDHHPSQQGQG-GLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLADPHLSISHVNYSLDQFQLLFPSVMVVVEQ 142
BLAST of gamma-tubulin complex component 4- partial vs. nr
Match: gi|955492583|ref|XP_004421541.2| (PREDICTED: gamma-tubulin complex component 4 [Ceratotherium simum simum]) HSP 1 Score: 107.071 bits (266), Expect = 4.384e-24 Identity = 56/143 (39.16%), Postives = 83/143 (58.04%), Query Frame = 0 Query: 12 MLHELLLALSGHQGQVFASWGENKIKVNEALGLFHPCELSLLNELLCLASELREIQTFI------AQRRDQSSSRKSDGEDLHGLYAEALCEGLEQVLLPYRTALIDLERRILEDGRIQLSHIQHELSPYQILLPSLTKLIRQ 148 M+HELLLALSG+ G +F N ++V++ HP E S+LN L L ++ FI Q++D S++ G LHG+Y A C GL+ VL PYR AL+DLE+ L D + +SH+ + L +Q+L PS+ ++ Q Sbjct: 96 MIHELLLALSGYPGSIFTWNKRNGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQQQDHHPSQQGQG-GLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLADPHLSISHVNYSLDQFQLLFPSVMVVVEQ 237
BLAST of gamma-tubulin complex component 4- partial vs. nr
Match: gi|586989152|ref|XP_003987278.2| (gamma-tubulin complex component 4 [Felis catus]) HSP 1 Score: 106.686 bits (265), Expect = 5.761e-24 Identity = 56/143 (39.16%), Postives = 84/143 (58.74%), Query Frame = 0 Query: 12 MLHELLLALSGHQGQVFASWGENKIKVNEALGLFHPCELSLLNELLCLASELREIQTFI------AQRRDQSSSRKSDGEDLHGLYAEALCEGLEQVLLPYRTALIDLERRILEDGRIQLSHIQHELSPYQILLPSLTKLIRQ 148 M+HELLLALSG+ G +F + ++V++ HP E S+LN L L ++ FI Q++D S++S G LHG+Y A C GL+ VL PYR AL+DLE+ L D + +SH+ + L +Q+L PS+ ++ Q Sbjct: 1 MIHELLLALSGYPGSIFTWNKRSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQQQDHHPSQQSQG-GLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLADPHLSISHVNYSLDQFQLLFPSVMVVVEQ 142
BLAST of gamma-tubulin complex component 4- partial vs. nr
Match: gi|947318971|ref|XP_006162944.2| (PREDICTED: gamma-tubulin complex component 4 [Tupaia chinensis]) HSP 1 Score: 105.916 bits (263), Expect = 1.012e-23 Identity = 56/143 (39.16%), Postives = 84/143 (58.74%), Query Frame = 0 Query: 12 MLHELLLALSGHQGQVFASWGENKIKVNEALGLFHPCELSLLNELLCLASELREIQTFI------AQRRDQSSSRKSDGEDLHGLYAEALCEGLEQVLLPYRTALIDLERRILEDGRIQLSHIQHELSPYQILLPSLTKLIRQ 148 M+HELLLALSG+ G +F + ++V++ L HP E S+LN L L ++ FI Q++D S++ G LHG+Y A C GL+ VL PYR AL+DLE+ L D + +SH+ + L +Q+L PS+ ++ Q Sbjct: 1 MIHELLLALSGYPGSIFTWNKRSGLQVSQDLPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQQQDHHPSQQGQG-GLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLADPHLSISHVNYSLDQFQLLFPSVMVVVEQ 142
BLAST of gamma-tubulin complex component 4- partial vs. nr
Match: gi|674094514|ref|XP_008820548.1| (PREDICTED: gamma-tubulin complex component 4 isoform X2 [Nannospalax galili]) HSP 1 Score: 105.916 bits (263), Expect = 1.062e-23 Identity = 56/143 (39.16%), Postives = 84/143 (58.74%), Query Frame = 0 Query: 12 MLHELLLALSGHQGQVFASWGENKIKVNEALGLFHPCELSLLNELLCLASELREIQTFI------AQRRDQSSSRKSDGEDLHGLYAEALCEGLEQVLLPYRTALIDLERRILEDGRIQLSHIQHELSPYQILLPSLTKLIRQ 148 M+HELLLALSG+ G +F + ++V++ L HP E S+LN L L ++ FI Q++D S++ G LHG+Y A C GL+ VL PYR AL+DLE+ L D + +SH+ + L +Q+L PS+ ++ Q Sbjct: 1 MIHELLLALSGYPGSIFTWNKRSGLQVSQDLPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQQQDHHPSQQGQG-GLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLTDPHLSVSHVNYSLDQFQLLFPSVMVVVEQ 142 The following BLAST results are available for this feature:
BLAST of gamma-tubulin complex component 4- partial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of gamma-tubulin complex component 4- partial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 3
BLAST of gamma-tubulin complex component 4- partial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold631_size122145:1146..1881- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold631_size122145-snap-gene-0.41 ID=maker-scaffold631_size122145-snap-gene-0.41|Name=gamma-tubulin complex component 4- partial|organism=Tigriopus kingsejongensis|type=gene|length=736bp|location=Sequence derived from alignment at scaffold631_size122145:1146..1881- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'gamma-tubulin complex component 4- partial' has the following synonyms
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