cold shock domain-containing protein c2, maker-scaffold770_size100439-snap-gene-0.29 (gene) Tigriopus kingsejongensis

Overview
Namecold shock domain-containing protein c2
Unique Namemaker-scaffold770_size100439-snap-gene-0.29
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of cold shock domain-containing protein c2 vs. L. salmonis genes
Match: EMLSAG00000003179 (supercontig:LSalAtl2s:LSalAtl2s176:378973:380312:1 gene:EMLSAG00000003179 transcript:EMLSAT00000003179 description:"maker-LSalAtl2s176-augustus-gene-3.18")

HSP 1 Score: 138.272 bits (347), Expect = 2.703e-42
Identity = 58/102 (56.86%), Postives = 81/102 (79.41%), Query Frame = 0 
Query:   28 PELIITRRTRTQSMSGRIEDQVHKGMVKFFCRSKGHGFIIPLN--GSDNPVFMHISDIDGEFIPRKGDTVRFKLCPMPPKFDKFQAVHITIVDFTPEVHHRW 127
            PE   TRRTRT+S +G+I + +H+G+VK+FCRS+G GFI P      +   FMHISDI+GE++PR+ D V+FK+CP+PP+F+KFQAV + I++FTPEVHH+W
Sbjct:   63 PETYGTRRTRTESTAGKIVENLHEGIVKYFCRSRGFGFITPNKPINDNKEFFMHISDIEGEYVPRRDDQVKFKVCPIPPRFEKFQAVQVRIINFTPEVHHKW 164
[Close]
BLAST of cold shock domain-containing protein c2 vs. SwissProt
Match: gi|75027588|sp|Q9VVA0.1|Y9705_DROME (RecName: Full=Cold shock domain-containing protein CG9705)

HSP 1 Score: 131.724 bits (330), Expect = 8.756e-39
Identity = 61/106 (57.55%), Postives = 79/106 (74.53%), Query Frame = 0 
Query:   25 LRLPELIITRRTRTQSMSGR-IEDQVHKGMVKFFCRSKGHGFIIPLNGSDNPVFMHISDIDGEFIPRKGDTVRFKLCPMPPKFDKFQAVHITIVDFTPEVHHRWTE 129
            L+LP  IITRRTRT S S R +E+ V  GMVK F R+KGHGFI P  G ++ VF H+SDI+GE++P  GD V+++LC +PPK++K QAVH+ I   TPEVHH+W E
Sbjct:   29 LQLPSPIITRRTRTASTSARALENPVVTGMVKSFSRTKGHGFITPNAGGED-VFCHVSDIEGEYVPMPGDEVKYRLCAIPPKYEKHQAVHVQISHLTPEVHHKWEE 133
[Close]
BLAST of cold shock domain-containing protein c2 vs. SwissProt
Match: gi|41016923|sp|Q9CR86.1|CHSP1_MOUSE (RecName: Full=Calcium-regulated heat stable protein 1; AltName: Full=Calcium-regulated heat-stable protein of 24 kDa; Short=CRHSP-24)

HSP 1 Score: 105.916 bits (263), Expect = 1.265e-28
Identity = 56/124 (45.16%), Postives = 78/124 (62.90%), Query Frame = 0 
Query:    7 RTMSTSSSPMAGSPLPDGLRLPELIITRRTRTQSMSGRI-EDQVHKGMVKFFCRSKGHGFIIPLNGSDNPVFMHISDIDGEFIPRKGDTVRFKLCPMPPKFDKFQAVHITIVDFTPEVHHR-WT 128
            RT   S SP+ G+ +P  L       TRRTRT S + R  +  V+KG+ K FCRSKGHGFI P +G  + +F+HISD++GE++P +GD V +K+C +PPK +K QAV + I    P   H  W+
Sbjct:   26 RTRDRSPSPLRGNVVPSPLP------TRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPD-IFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETWS 142
[Close]
BLAST of cold shock domain-containing protein c2 vs. SwissProt
Match: gi|32129826|sp|Q63430.3|CSDC2_RAT (RecName: Full=Cold shock domain-containing protein C2; AltName: Full=RNA-binding protein PIPPin)

HSP 1 Score: 105.531 bits (262), Expect = 1.812e-28
Identity = 50/104 (48.08%), Postives = 70/104 (67.31%), Query Frame = 0 
Query:   27 LPELIITRRTRTQSMSGRIE-DQVHKGMVKFFCRSKGHGFIIPLNGSDNPVFMHISDIDGEFIPRKGDTVRFKLCPMPPKFDKFQAVHITIVDFTPEV-HHRWT 128
            LP  + T+RTRT S + R     V KG+ K F RS+GHGFI P NGS++ +F+H+SDI+GE++P +GD V +K+CP+PPK  KFQAV + +    P   H  W+
Sbjct:   46 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSED-IFVHVSDIEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWS 148
[Close]
BLAST of cold shock domain-containing protein c2 vs. SwissProt
Match: gi|32129852|sp|Q9Y534.1|CSDC2_HUMAN (RecName: Full=Cold shock domain-containing protein C2; AltName: Full=RNA-binding protein PIPPin)

HSP 1 Score: 105.531 bits (262), Expect = 1.944e-28
Identity = 50/104 (48.08%), Postives = 70/104 (67.31%), Query Frame = 0 
Query:   27 LPELIITRRTRTQSMSGRIE-DQVHKGMVKFFCRSKGHGFIIPLNGSDNPVFMHISDIDGEFIPRKGDTVRFKLCPMPPKFDKFQAVHITIVDFTPEV-HHRWT 128
            LP  + T+RTRT S + R     V KG+ K F RS+GHGFI P NGS++ +F+H+SDI+GE++P +GD V +K+CP+PPK  KFQAV + +    P   H  W+
Sbjct:   45 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSED-IFVHVSDIEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWS 147
[Close]
BLAST of cold shock domain-containing protein c2 vs. SwissProt
Match: gi|408360036|sp|Q91YQ3.2|CSDC2_MOUSE (RecName: Full=Cold shock domain-containing protein C2; AltName: Full=RNA-binding protein PIPPin)

HSP 1 Score: 105.145 bits (261), Expect = 2.764e-28
Identity = 50/104 (48.08%), Postives = 70/104 (67.31%), Query Frame = 0 
Query:   27 LPELIITRRTRTQSMSGRIE-DQVHKGMVKFFCRSKGHGFIIPLNGSDNPVFMHISDIDGEFIPRKGDTVRFKLCPMPPKFDKFQAVHITIVDFTPEV-HHRWT 128
            LP  + T+RTRT S + R     V KG+ K F RS+GHGFI P NGS++ +F+H+SDI+GE++P +GD V +K+CP+PPK  KFQAV + +    P   H  W+
Sbjct:   46 LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSED-IFVHVSDIEGEYVPVEGDEVTYKICPIPPKNQKFQAVEVVLTQLAPHTPHETWS 148
[Close]
BLAST of cold shock domain-containing protein c2 vs. SwissProt
Match: gi|41016932|sp|Q9Y2V2.2|CHSP1_HUMAN (RecName: Full=Calcium-regulated heat-stable protein 1; AltName: Full=Calcium-regulated heat-stable protein of 24 kDa; Short=CRHSP-24)

HSP 1 Score: 105.145 bits (261), Expect = 2.833e-28
Identity = 55/124 (44.35%), Postives = 78/124 (62.90%), Query Frame = 0 
Query:    7 RTMSTSSSPMAGSPLPDGLRLPELIITRRTRTQSMSGRI-EDQVHKGMVKFFCRSKGHGFIIPLNGSDNPVFMHISDIDGEFIPRKGDTVRFKLCPMPPKFDKFQAVHITIVDFTPEVHHR-WT 128
            R+   S SP+ G+ +P  L       TRRTRT S + R  +  V+KG+ K FCRSKGHGFI P +G  + +F+HISD++GE++P +GD V +K+C +PPK +K QAV + I    P   H  W+
Sbjct:   25 RSRERSPSPLRGNVVPSPLP------TRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPD-IFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETWS 141
[Close]
BLAST of cold shock domain-containing protein c2 vs. SwissProt
Match: gi|41016763|sp|Q9WU49.1|CHSP1_RAT (RecName: Full=Calcium-regulated heat stable protein 1; AltName: Full=Calcium-regulated heat-stable protein of 24 kDa; Short=CRHSP-24)

HSP 1 Score: 104.375 bits (259), Expect = 5.141e-28
Identity = 55/124 (44.35%), Postives = 77/124 (62.10%), Query Frame = 0 
Query:    7 RTMSTSSSPMAGSPLPDGLRLPELIITRRTRTQSMSGRI-EDQVHKGMVKFFCRSKGHGFIIPLNGSDNPVFMHISDIDGEFIPRKGDTVRFKLCPMPPKFDKFQAVHITIVDFTPEVHHR-WT 128
            R    S SP+ G+ +P  L       TRRTRT S + R  +  V+KG+ K FCRSKGHGFI P +G  + +F+HISD++GE++P +GD V +K+C +PPK +K QAV + I    P   H  W+
Sbjct:   25 RARDRSPSPLRGNVVPSPLP------TRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPD-IFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETWS 141
[Close]
BLAST of cold shock domain-containing protein c2 vs. nr
Match: gi|225719590|gb|ACO15641.1| (Cold shock domain-containing protein C2 [Caligus clemensi])

HSP 1 Score: 149.058 bits (375), Expect = 1.037e-42
Identity = 71/130 (54.62%), Postives = 94/130 (72.31%), Query Frame = 0 
Query:    3 PLANRTMSTSSSPMAGSP---LPDGLRLPELIITRRTRTQSMSGRIEDQVHKGMVKFFCRSKGHGFIIPLNG-SDNP-VFMHISDIDGEFIPRKGDTVRFKLCPMPPKFDKFQAVHITIVDFTPEVHHRW 127
            PL+ RT   S S  A S    L + L  PE   TRRTRT+S SG+  + +H+G VK+FCRS+G GFI P    +DN   FMHISDI+GEF+PR+ D+V+FK+CP+PP+F+KFQAV + I++FTPEVHH+W
Sbjct:   18 PLSRRTRCDSCSESALSSTTVLSESLDPPETFATRRTRTESTSGKTTENIHEGTVKYFCRSRGFGFITPNKSVNDNQEFFMHISDIEGEFVPRRNDSVQFKVCPIPPRFEKFQAVQVRIINFTPEVHHKW 147
[Close]
BLAST of cold shock domain-containing protein c2 vs. nr
Match: gi|751438993|ref|XP_011181840.1| (PREDICTED: cold shock domain-containing protein CG9705 [Zeugodacus cucurbitae])

HSP 1 Score: 142.51 bits (358), Expect = 1.376e-40
Identity = 68/128 (53.12%), Postives = 91/128 (71.09%), Query Frame = 0 
Query:    3 PLANRTMSTSSSPMAGSPLPDGLRLPELIITRRTRTQSMSGR-IEDQVHKGMVKFFCRSKGHGFIIPLNGSDNPVFMHISDIDGEFIPRKGDTVRFKLCPMPPKFDKFQAVHITIVDFTPEVHHRWTE 129
            P  NR  ST S  +        L+LP  IIT+RTRT S S R +E+ +  G+VK F RSKGHGFI P +G D+ +F H+SDIDGE++P++GD VR++LC +PPKF+K QAVH+ I++ TPEVHH+W E
Sbjct:   15 PPTNRQQSTHSPNLT-------LQLPSPIITKRTRTASTSARALENPIETGIVKAFSRSKGHGFITPKSGGDD-LFCHVSDIDGEYVPQQGDEVRYRLCAIPPKFEKHQAVHVQIINLTPEVHHKWEE 134
[Close]
BLAST of cold shock domain-containing protein c2 vs. nr
Match: gi|225709220|gb|ACO10456.1| (Cold shock domain-containing protein C2 [Caligus rogercresseyi] >gi|225711724|gb|ACO11708.1| Cold shock domain-containing protein C2 [Caligus rogercresseyi])

HSP 1 Score: 142.51 bits (358), Expect = 5.552e-40
Identity = 62/110 (56.36%), Postives = 85/110 (77.27%), Query Frame = 0 
Query:   21 LPDGLRLPELIITRRTRTQSMSGRIEDQVHKGMVKFFCRSKGHGFIIP---LNGSDNPVFMHISDIDGEFIPRKGDTVRFKLCPMPPKFDKFQAVHITIVDFTPEVHHRW 127
            L + L  PE  +TRRTRT+S SG+  + + +G VK+FCRS+G GF+ P   +NG +   FMHISDI+GEF+PR+ DTV+FK+CP+PP+F+KFQAV + I +FTPEVHH+W
Sbjct:   57 LSEALDPPETFVTRRTRTESTSGKTTENLVEGTVKYFCRSRGFGFLTPNKPVNG-NKEFFMHISDIEGEFVPRRNDTVQFKVCPIPPRFEKFQAVQVRITNFTPEVHHKW 165
[Close]
BLAST of cold shock domain-containing protein c2 vs. nr
Match: gi|225708686|gb|ACO10189.1| (Cold shock domain-containing protein C2 [Caligus rogercresseyi])

HSP 1 Score: 142.124 bits (357), Expect = 7.130e-40
Identity = 62/110 (56.36%), Postives = 85/110 (77.27%), Query Frame = 0 
Query:   21 LPDGLRLPELIITRRTRTQSMSGRIEDQVHKGMVKFFCRSKGHGFIIP---LNGSDNPVFMHISDIDGEFIPRKGDTVRFKLCPMPPKFDKFQAVHITIVDFTPEVHHRW 127
            L + L  PE  +TRRTRT+S SG+  + + +G VK+FCRS+G GF+ P   +NG +   FMHISDI+GEF+PR+ DTV+FK+CP+PP+F+KFQAV + I +FTPEVHH+W
Sbjct:   57 LSEALDPPETFVTRRTRTESTSGKTTENLVEGTVKYFCRSRGFGFLTPNKPVNG-NKEFFMHISDIEGEFVPRRNDTVQFKVCPIPPRFEKFQAVQVRITNFTPEVHHKW 165
[Close]
BLAST of cold shock domain-containing protein c2 vs. nr
Match: gi|929382165|ref|XP_014101570.1| (PREDICTED: cold shock domain-containing protein CG9705, partial [Bactrocera oleae])

HSP 1 Score: 138.272 bits (347), Expect = 4.688e-39
Identity = 62/110 (56.36%), Postives = 84/110 (76.36%), Query Frame = 0 
Query:   25 LRLPELIITRRTRTQSMSGR-IEDQVHKGMVKFFCRSKGHGFIIPLNGSDNPVFMHISDIDGEFIPRKGDTVRFKLCPMPPKFDKFQAVHITIVDFTPEVHHRWTEKETP 133
            L+LP  IIT+RTRT S S R +E+ +  G+VK F RSKGHGFI P +G +  +F H+SDIDGE++P++GD VR++LC +PPKF+K QAVH+ I++ TPEVHH+W E   P
Sbjct:   14 LQLPSPIITKRTRTASTSARALENPIETGIVKAFSRSKGHGFITPKSGGEE-LFCHVSDIDGEYVPQQGDEVRYRLCAIPPKFEKHQAVHVQIINLTPEVHHKWEEPVYP 122
[Close]
BLAST of cold shock domain-containing protein c2 vs. nr
Match: gi|498935807|ref|XP_004520226.1| (cold shock domain-containing protein CG9705 [Ceratitis capitata] >gi|1184338479|ref|XP_020712562.1| cold shock domain-containing protein CG9705 [Ceratitis capitata])

HSP 1 Score: 138.272 bits (347), Expect = 5.864e-39
Identity = 61/110 (55.45%), Postives = 84/110 (76.36%), Query Frame = 0 
Query:   25 LRLPELIITRRTRTQSMSGR-IEDQVHKGMVKFFCRSKGHGFIIPLNGSDNPVFMHISDIDGEFIPRKGDTVRFKLCPMPPKFDKFQAVHITIVDFTPEVHHRWTEKETP 133
            L+LP  IIT+RTRT S S R +E+ +  G+VK F RSKGHGFI P  G ++ +F H+SD+DGE++P++GD VR++LC +PPKF+K QAVH+ I++ TPEVHH+W E   P
Sbjct:   30 LQLPSPIITKRTRTASTSARALENPIETGIVKSFSRSKGHGFITPSAGGED-LFCHVSDVDGEYVPQQGDEVRYRLCAIPPKFEKHQAVHVQIINLTPEVHHKWEEPVYP 138
[Close]
BLAST of cold shock domain-containing protein c2 vs. nr
Match: gi|1048044466|ref|XP_017493667.1| (PREDICTED: cold shock domain-containing protein CG9705 [Rhagoletis zephyria])

HSP 1 Score: 138.272 bits (347), Expect = 7.058e-39
Identity = 61/111 (54.95%), Postives = 84/111 (75.68%), Query Frame = 0 
Query:   25 LRLPELIITRRTRTQSMSGR-IEDQVHKGMVKFFCRSKGHGFIIPLNGSDNPVFMHISDIDGEFIPRKGDTVRFKLCPMPPKFDKFQAVHITIVDFTPEVHHRWTEKETPQ 134
            L+LP  IIT+RTRT S S R +E+ +  G+VK F RSKGHGFI P  G ++ +F H+SD+DGE++P+ GD VR++LC +PPKF+K QAVH+ I++ TPEVHH+W E   P+
Sbjct:   30 LQLPSPIITKRTRTASTSARALENPIETGIVKSFSRSKGHGFITPKAGGED-LFCHVSDVDGEYVPQAGDEVRYRLCAIPPKFEKHQAVHVQIINLTPEVHHKWEEPVYPE 139
[Close]
BLAST of cold shock domain-containing protein c2 vs. nr
Match: gi|751774573|ref|XP_011213916.1| (PREDICTED: cold shock domain-containing protein CG9705 [Bactrocera dorsalis] >gi|751774575|ref|XP_011213917.1| PREDICTED: cold shock domain-containing protein CG9705 [Bactrocera dorsalis] >gi|751774577|ref|XP_011213918.1| PREDICTED: cold shock domain-containing protein CG9705 [Bactrocera dorsalis] >gi|1132375767|ref|XP_019848475.1| PREDICTED: cold shock domain-containing protein CG9705 [Bactrocera dorsalis])

HSP 1 Score: 137.117 bits (344), Expect = 1.689e-38
Identity = 66/128 (51.56%), Postives = 88/128 (68.75%), Query Frame = 0 
Query:    3 PLANRTMSTSSSPMAGSPLPDGLRLPELIITRRTRTQSMSGR-IEDQVHKGMVKFFCRSKGHGFIIPLNGSDNPVFMHISDIDGEFIPRKGDTVRFKLCPMPPKFDKFQAVHITIVDFTPEVHHRWTE 129
            P  NR  S  S  +        L+LP  IIT+RTRT S S R +E+ +  G+VK F RSKGHGFI P +G +  +F H+SDIDGE++P+ GD VR++LC +PPKF+K QAVH+ I++ TPEVHH+W E
Sbjct:   15 PPTNRQQSAHSPNLT-------LQLPSPIITKRTRTASTSARALENPIETGIVKAFSRSKGHGFISPKSGGEE-LFCHVSDIDGEYVPQPGDEVRYRLCAIPPKFEKHQAVHVQIINLTPEVHHKWEE 134
[Close]
BLAST of cold shock domain-containing protein c2 vs. nr
Match: gi|557762264|ref|XP_005180846.1| (PREDICTED: cold shock domain-containing protein CG9705 [Musca domestica])

HSP 1 Score: 136.732 bits (343), Expect = 1.942e-38
Identity = 63/109 (57.80%), Postives = 84/109 (77.06%), Query Frame = 0 
Query:   22 PDGLRLPELIITRRTRTQSMSGR-IEDQVHKGMVKFFCRSKGHGFIIPLNGSDNPVFMHISDIDGEFIPRKGDTVRFKLCPMPPKFDKFQAVHITIVDFTPEVHHRWTE 129
            P+ L+LP  IIT+RTRT S S R +E+ +  G VK F R+KGHGFI P +G D+ +F HISDI+GEF+P +GD V+++LC +PPK +KFQAVH+ I++ TPEVHHRW E
Sbjct:   28 PNSLQLPSPIITKRTRTASTSARAMENPIVTGTVKSFSRTKGHGFITPKDGGDD-LFCHISDIEGEFVPMEGDEVKYRLCAIPPKNEKFQAVHVKIINLTPEVHHRWEE 135
[Close]
BLAST of cold shock domain-containing protein c2 vs. nr
Match: gi|225712740|gb|ACO12216.1| (Cold shock domain-containing protein C2 [Lepeophtheirus salmonis] >gi|225713682|gb|ACO12687.1| Cold shock domain-containing protein C2 [Lepeophtheirus salmonis] >gi|290561012|gb|ADD37908.1| Cold shock domain-containing protein CG9705 [Lepeophtheirus salmonis])

HSP 1 Score: 138.272 bits (347), Expect = 2.673e-38
Identity = 58/102 (56.86%), Postives = 81/102 (79.41%), Query Frame = 0 
Query:   28 PELIITRRTRTQSMSGRIEDQVHKGMVKFFCRSKGHGFIIPLN--GSDNPVFMHISDIDGEFIPRKGDTVRFKLCPMPPKFDKFQAVHITIVDFTPEVHHRW 127
            PE   TRRTRT+S +G+I + +H+G+VK+FCRS+G GFI P      +   FMHISDI+GE++PR+ D V+FK+CP+PP+F+KFQAV + I++FTPEVHH+W
Sbjct:   63 PETYGTRRTRTESTAGKIVENLHEGIVKYFCRSRGFGFITPNKPINDNKEFFMHISDIEGEYVPRRDDQVKFKVCPIPPRFEKFQAVQVRIINFTPEVHHKW 164
The following BLAST results are available for this feature:
BLAST of cold shock domain-containing protein c2 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000031792.703e-4256.86supercontig:LSalAtl2s:LSalAtl2s176:378973:380312:1... [more]
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BLAST of cold shock domain-containing protein c2 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
gi|75027588|sp|Q9VVA0.1|Y9705_DROME8.756e-3957.55RecName: Full=Cold shock domain-containing protein... [more]
gi|41016923|sp|Q9CR86.1|CHSP1_MOUSE1.265e-2845.16RecName: Full=Calcium-regulated heat stable protei... [more]
gi|32129826|sp|Q63430.3|CSDC2_RAT1.812e-2848.08RecName: Full=Cold shock domain-containing protein... [more]
gi|32129852|sp|Q9Y534.1|CSDC2_HUMAN1.944e-2848.08RecName: Full=Cold shock domain-containing protein... [more]
gi|408360036|sp|Q91YQ3.2|CSDC2_MOUSE2.764e-2848.08RecName: Full=Cold shock domain-containing protein... [more]
gi|41016932|sp|Q9Y2V2.2|CHSP1_HUMAN2.833e-2844.35RecName: Full=Calcium-regulated heat-stable protei... [more]
gi|41016763|sp|Q9WU49.1|CHSP1_RAT5.141e-2844.35RecName: Full=Calcium-regulated heat stable protei... [more]
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BLAST of cold shock domain-containing protein c2 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|225719590|gb|ACO15641.1|1.037e-4254.62Cold shock domain-containing protein C2 [Caligus c... [more]
gi|751438993|ref|XP_011181840.1|1.376e-4053.13PREDICTED: cold shock domain-containing protein CG... [more]
gi|225709220|gb|ACO10456.1|5.552e-4056.36Cold shock domain-containing protein C2 [Caligus r... [more]
gi|225708686|gb|ACO10189.1|7.130e-4056.36Cold shock domain-containing protein C2 [Caligus r... [more]
gi|929382165|ref|XP_014101570.1|4.688e-3956.36PREDICTED: cold shock domain-containing protein CG... [more]
gi|498935807|ref|XP_004520226.1|5.864e-3955.45cold shock domain-containing protein CG9705 [Cerat... [more]
gi|1048044466|ref|XP_017493667.1|7.058e-3954.95PREDICTED: cold shock domain-containing protein CG... [more]
gi|751774573|ref|XP_011213916.1|1.689e-3851.56PREDICTED: cold shock domain-containing protein CG... [more]
gi|557762264|ref|XP_005180846.1|1.942e-3857.80PREDICTED: cold shock domain-containing protein CG... [more]
gi|225712740|gb|ACO12216.1|2.673e-3856.86Cold shock domain-containing protein C2 [Lepeophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold770_size100439supercontigscaffold770_size100439:40073..42474 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold770_size100439-snap-gene-0.29-mRNA-1maker-scaffold770_size100439-snap-gene-0.29-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold770_size100439:40073..42474-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold770_size100439-snap-gene-0.29 ID=maker-scaffold770_size100439-snap-gene-0.29|Name=cold shock domain-containing protein c2|organism=Tigriopus kingsejongensis|type=gene|length=2402bp|location=Sequence derived from alignment at scaffold770_size100439:40073..42474- (Tigriopus kingsejongensis)
CGCTAAGTTTGTTTCGAGATTGGCCCACAGCGCATAAGTCGCGTCTACAG
GCAGAAAAGCCGCCGAACGTTCCCAAAGTGTTGCAACCCTTTTTGTTCTT
GGATTTTGGACCCACTGGCCAACCGCACCATGAGTACCTCCAGCTCCCCC
ATGGCTGGTTCGCCCCTGCCCGATGGCTTGAGGCTGCCCGAGCTCATCAT
CACCCGCCGCACCCGTACTCAATCTATGTCCGGGCGCATTGAAGACCAGG
TCCACAAGGGGATGGTCAAGTTTTTCTGTCGCTCCAAAGGCCACGGTTTC
ATCATCCCGCTCAACGTAAGATGGCTAATAATGCGGGGCTTTCTTTTTTG
ACTTAGGAGGCTTCTTGAAGAGGCTGAGGCCTGAATGACCTCGGATGACC
TTGGCGGCCCAACCTCAACCGGACAGGTTCCATAATGAGTAGTCCAAACT
CGACGACGCCCGTCATCCGGCTTAGCTCGCCGGATATCCGCTCACATTCC
TCCCCCGGGTGGAGTAACTGACGGCAGTAGCACGGCTGGCTAATCTATAT
CACCTTTGACTGGGGACTGAGGCCTGATCTGGGGCCTAATGGGTTGGGGT
GACCTTGGAGACGTCTGTCTGGCCATCTCGACTTCATTGGGTGGATATTG
CGTCAACCTTACTTGAACCTCTGGAGTCTGGATGGAGCAGTCACATAAGT
CGTCGAGTACTACTGTGTCCGGGATAACAACCCCGGTCACGTATCATCCG
ATCAAGCTCTGGTATTCAGCTAAGCGGGCTACCTTCTATGAATCCTCATT
CTTCGGGCAGGGGTAAGCCGGTTAACCCCAAATCCAACATTGGCGTTCCA
TGTAGCTTTTCGCCCCCCCCCCAAAAACCAGACCCGCCGCCTGATCCTAG
TTTTCGAGCCTGATCCCGTAATGATTGCCCTCCTGGATTGAGGTGACTAC
CAATCTCAAGGGCAGAATGGATGGTTATCGGCCTTGGATAAACCTGGGCT
GCCACCTACGCGCTGAGGAAAAACACTATGTGTAATAGGGCCCGGTGACC
TGGCCATTGGGGCGTTCCGAGCACATTTCGGGCCAATTCAGCCTCAATCT
CCACGGCCCCCGTCCAAGTAATGGCCTGGAAACGAAAGCTTGATCCCAGA
CCGTTTGACGGAGAGCAAATGTAAACTCGAAGTAACATACTACAGTGACA
GCGCACAAACTCGGCGTCATTTTTTCACGCTGATCCAATGAGAATACTCG
CGAGGTCCACTGAAGTGGACCCGATGTTGATGGGGGCCCAGCTAACTGGA
TTATCCACTGGACCACCGTTTGCCATTTTCGTCGCGTGGATAGATGTCGA
GCGATTGTGAAGCCCAGGACAAATTAGATTACTTGGGCCGAAGTGACCGC
AACGTTGTCCTCGAAAGATGATCGCTTTAGTTTGACCAGTCAATCTCAGG
TGAATCCCTGAATGAGTCGCCACATCCTGCTGTACATATGTCCAAAGTGG
ATCTGGTGTCGGTTACTCTCTCTCTCTCCAAGCTGTGGCCATGAATTGGG
AACGACTTGGCCATGGGCATCCAGAGAGATTGCTCCCATCTTGATCCACT
GCTGATTGGTGTCAGCACACTTGTAATGGATGGTTCAGGGCCGTCAAAAC
GACAATAAACACTGTGCCACTGTGCTCAGTGGTGAAAGATTCCCTGCATA
TATTCCCGCGTCATTGGCCCCAGTTTGTTCCACCGAGTGTTTGCTTATAG
CTTGAAGGGGGAACATGGGTGACGTCAACTTGATCGAGCCTGACGAGGGT
ATCGCTTTTTCTTCTTTCAGGGTTCTGACAATCCGGTCTTCATGCACATC
TCTGACATTGATGGCGAATTCATCCCTCGCAAAGGAGACACGGTCCGGTT
CAAGCTGTGCCCGATGCCGCCCAAGTTCGACAAGTTCCAGGCCGTTCACA
TAACCATTGTGGACTTCACGCCCGAGGTTCATCACCGATGGACCGAGAAG
GAGACGCCTCAAGAATTGGAAGAGGACAAGAAGGCCTTGGAAGAAGAGGC
CCGCATGAAAGAGGAGATGAGTGAGAAGGTGATCATGGATGTCTGAGCAC
CTCTCATCCAATTCAGTATGTGTGGAAAAGTTGCCATGGCTATTGGTGGT
TTTGTGAGGCAGAAACATTCGGGAAAAGCATGTCTTAATCAAGCAATGAA
CGACACAAGCAGACGTTTATATATAACCATTGAGTTTTTTTAAAGAAGTT
CTAGGGAAGATCTCCAATTTCTGTCCCTGCATAATTTACCCACCAATTCA
ATCCACACTTATAATGAAGATTGGTCATTACCATACATAATGTACTTACT
ACCCATGGGTGAAGAAGAAAATACAAGTTACATGGCCTATTTAACCCAAG
CT
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Synonyms
The feature 'cold shock domain-containing protein c2' has the following synonyms
Synonym
Tk05395
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