voltage-dependent calcium channel subunit alpha-2 delta-1-like, maker-scaffold87_size395581-snap-gene-0.15 (gene) Tigriopus kingsejongensis

Overview
Namevoltage-dependent calcium channel subunit alpha-2 delta-1-like
Unique Namemaker-scaffold87_size395581-snap-gene-0.15
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of voltage-dependent calcium channel subunit alpha-2 delta-1-like vs. L. salmonis genes
Match: EMLSAG00000000738 (supercontig:LSalAtl2s:LSalAtl2s1118:23248:41219:-1 gene:EMLSAG00000000738 transcript:EMLSAT00000000738 description:"maker-LSalAtl2s1118-snap-gene-0.25")

HSP 1 Score: 130.954 bits (328), Expect = 3.619e-36
Identity = 64/154 (41.56%), Postives = 95/154 (61.69%), Query Frame = 0
Query:    8 ESSMSVSEYSFRMPEGMHRCTTNTSYWSLNPELKSDDFHERISGDCK---ECSRDYHIYKLSQINALLIVSDPKCISCNVPSYKDKPIEVDPEALETCHLPKRFRKRPPKCFSRHEEEIPECSSAS----PLFFPFQLLKLSMALIPILVSVVL 154
            E S  +S+++ ++ EG+HRCTT TS W++NP LK  +FH+R++  C+   EC RD H++KL  IN L +VS+P+C  CN P +   P+E+   A E C LP R+RKR   CF++ + E  ECS  S     L+    L+ LS+ L PI +  +L
Sbjct:  930 EGSFGLSQFNHKVQEGIHRCTTKTSVWTINPNLKKSEFHDRMTSTCRSETECKRDLHMFKLKNINGLFVVSNPECAHCNAPPFPKGPVEI--MATENCLLPHRYRKRQSGCFAQSDMETSECSKGSINLPGLWKTLILMYLSL-LSPIFLRKLL 1080          
BLAST of voltage-dependent calcium channel subunit alpha-2 delta-1-like vs. nr
Match: gi|1126200710|ref|XP_019633684.1| (PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-2-like [Branchiostoma belcheri])

HSP 1 Score: 63.1586 bits (152), Expect = 1.240e-8
Identity = 31/85 (36.47%), Postives = 47/85 (55.29%), Query Frame = 0
Query:   50 SGDCKECSRDYHIYKLSQINALLIVSDPKCISCNVPSYKDKPIEVDPEAL---ETCHLPKRFRKRPPKCFSRH-EEEIPECSSAS 130
            S DC  CSR   + +L   N LL+V+DP C SCN     + P+  +P+     + CH+  R+R+ P KC+  H EE+   C +A+
Sbjct:  854 SDDCGNCSRKMTVRQLRYSNLLLVVADPVCDSCN-----NTPVIQEPQKTNNPDQCHVTPRYRRGPEKCYDHHPEEDASHCGAAA 933          
BLAST of voltage-dependent calcium channel subunit alpha-2 delta-1-like vs. nr
Match: gi|1108888022|ref|XP_019122324.1| (PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-1-like [Larimichthys crocea])

HSP 1 Score: 62.7734 bits (151), Expect = 1.955e-8
Identity = 42/129 (32.56%), Postives = 63/129 (48.84%), Query Frame = 0
Query:   11 MSVSEYSFRMPEGMHR--CTT-NTSYWSLNPELKSDDFHERISGDCKECSRDYHIYKLSQINALLIVSD--PKCISCNV-PSYKDKPIEVDPEALETCHLPKRFRKRPPKCFSRHE-EEIPECSSASPL 132
            +  +E    +PE M +  CTT  T Y+      +++    R + DC+ C+R YH  KL + N + I++D  P C SC+  P  +D+     P   E    P R+RK P  CF   E E+ P+C   S L
Sbjct:  939 LDAAEMDDELPEAMRKEVCTTEQTQYY-----FETNQLTFRGNIDCENCTRMYHAEKLPKTNLVFIIADAKPTCSSCDTKPLIQDEQPSDGPNPCERAQNP-RYRKGPAACFDNTEHEQDPDCGGVSGL 1061          
BLAST of voltage-dependent calcium channel subunit alpha-2 delta-1-like vs. nr
Match: gi|1308380531|ref|XP_023119102.1| (voltage-dependent calcium channel subunit alpha-2/delta-1-like isoform X2 [Amphiprion ocellaris])

HSP 1 Score: 62.3882 bits (150), Expect = 2.322e-8
Identity = 44/131 (33.59%), Postives = 63/131 (48.09%), Query Frame = 0
Query:    9 SSMSVSEYSFRMPEGMHR---CTTNTSYWSLNPELKSDDFHERISGDCKECSRDYHIYKLSQINALLIVSDPK--CISCNV-PSYKDKPIEVDPEALETCHLPKRFRKRPPKCFSRHE-EEIPECSSASPL 132
            S M  +E    + + M +    T  T Y+      ++D+   R S DC+ CSR YH  KL + N + I++D K  C SC+  P  +D+     P   E    P R+RK P  CF  +E EE P+C   S L
Sbjct:  927 SYMDAAEMDDEVSDAMRQEVCITEQTQYF-----FETDNLSFRGSVDCENCSRLYHAEKLPKTNLVFIITDAKGTCTSCDTKPLIQDEQQSNGPNPCEMALNP-RYRKGPAVCFDNNEHEEDPDCGGVSGL 1051          
BLAST of voltage-dependent calcium channel subunit alpha-2 delta-1-like vs. nr
Match: gi|1308380537|ref|XP_023119117.1| (voltage-dependent calcium channel subunit alpha-2/delta-1-like isoform X4 [Amphiprion ocellaris])

HSP 1 Score: 62.3882 bits (150), Expect = 2.344e-8
Identity = 44/131 (33.59%), Postives = 63/131 (48.09%), Query Frame = 0
Query:    9 SSMSVSEYSFRMPEGMHR---CTTNTSYWSLNPELKSDDFHERISGDCKECSRDYHIYKLSQINALLIVSDPK--CISCNV-PSYKDKPIEVDPEALETCHLPKRFRKRPPKCFSRHE-EEIPECSSASPL 132
            S M  +E    + + M +    T  T Y+      ++D+   R S DC+ CSR YH  KL + N + I++D K  C SC+  P  +D+     P   E    P R+RK P  CF  +E EE P+C   S L
Sbjct:  924 SYMDAAEMDDEVSDAMRQEVCITEQTQYF-----FETDNLSFRGSVDCENCSRLYHAEKLPKTNLVFIITDAKGTCTSCDTKPLIQDEQQSNGPNPCEMALNP-RYRKGPAVCFDNNEHEEDPDCGGVSGL 1048          
BLAST of voltage-dependent calcium channel subunit alpha-2 delta-1-like vs. nr
Match: gi|1308380528|ref|XP_023119094.1| (voltage-dependent calcium channel subunit alpha-2/delta-1-like isoform X1 [Amphiprion ocellaris])

HSP 1 Score: 62.3882 bits (150), Expect = 2.368e-8
Identity = 44/131 (33.59%), Postives = 63/131 (48.09%), Query Frame = 0
Query:    9 SSMSVSEYSFRMPEGMHR---CTTNTSYWSLNPELKSDDFHERISGDCKECSRDYHIYKLSQINALLIVSDPK--CISCNV-PSYKDKPIEVDPEALETCHLPKRFRKRPPKCFSRHE-EEIPECSSASPL 132
            S M  +E    + + M +    T  T Y+      ++D+   R S DC+ CSR YH  KL + N + I++D K  C SC+  P  +D+     P   E    P R+RK P  CF  +E EE P+C   S L
Sbjct:  930 SYMDAAEMDDEVSDAMRQEVCITEQTQYF-----FETDNLSFRGSVDCENCSRLYHAEKLPKTNLVFIITDAKGTCTSCDTKPLIQDEQQSNGPNPCEMALNP-RYRKGPAVCFDNNEHEEDPDCGGVSGL 1054          
BLAST of voltage-dependent calcium channel subunit alpha-2 delta-1-like vs. nr
Match: gi|1308380534|ref|XP_023119110.1| (voltage-dependent calcium channel subunit alpha-2/delta-1-like isoform X3 [Amphiprion ocellaris])

HSP 1 Score: 62.3882 bits (150), Expect = 2.413e-8
Identity = 44/131 (33.59%), Postives = 63/131 (48.09%), Query Frame = 0
Query:    9 SSMSVSEYSFRMPEGMHR---CTTNTSYWSLNPELKSDDFHERISGDCKECSRDYHIYKLSQINALLIVSDPK--CISCNV-PSYKDKPIEVDPEALETCHLPKRFRKRPPKCFSRHE-EEIPECSSASPL 132
            S M  +E    + + M +    T  T Y+      ++D+   R S DC+ CSR YH  KL + N + I++D K  C SC+  P  +D+     P   E    P R+RK P  CF  +E EE P+C   S L
Sbjct:  924 SYMDAAEMDDEVSDAMRQEVCITEQTQYF-----FETDNLSFRGSVDCENCSRLYHAEKLPKTNLVFIITDAKGTCTSCDTKPLIQDEQQSNGPNPCEMALNP-RYRKGPAVCFDNNEHEEDPDCGGVSGL 1048          
BLAST of voltage-dependent calcium channel subunit alpha-2 delta-1-like vs. nr
Match: gi|1228964991|ref|XP_022045850.1| (voltage-dependent calcium channel subunit alpha-2/delta-1-like [Acanthochromis polyacanthus])

HSP 1 Score: 62.003 bits (149), Expect = 2.791e-8
Identity = 40/109 (36.70%), Postives = 55/109 (50.46%), Query Frame = 0
Query:   28 TTNTSYWSLNPELKSDDFHERISGDCKECSRDYHIYKLSQINALLIVSDPK--CISCNV-PSYKDKPIEVDPEALETCHLPKRFRKRPPKCFSRHE-EEIPECSSASPL 132
            T  T Y+      ++D+   R S DC+ CSR YH  KL + N + I++D K  C SC+  P  +D+     P   E    P R+RK P  CF  +E EE P+C   S L
Sbjct:  709 TEQTQYF-----FETDNLSFRGSVDCENCSRLYHAEKLPKTNLVFIITDAKGTCTSCDTKPLIQDEQQSNGPNPCEMALNP-RYRKGPAVCFDNNEHEEDPDCGGVSGL 811          
BLAST of voltage-dependent calcium channel subunit alpha-2 delta-1-like vs. nr
Match: gi|1079803039|ref|XP_018526509.1| (PREDICTED: LOW QUALITY PROTEIN: voltage-dependent calcium channel subunit alpha-2/delta-1-like [Lates calcarifer])

HSP 1 Score: 60.077 bits (144), Expect = 1.361e-7
Identity = 43/128 (33.59%), Postives = 65/128 (50.78%), Query Frame = 0
Query:   28 TTNTSYWSLNPELKSDDFHERISGDCKECSRDYHIYKLSQINALLIVSDPK--CISCNVPSYKDKPIEVDPEALETCHLPK--RFRKRPPKCFSRHE-EEIPECSSASPLFFPFQLLKLSMALIPILV 150
            T  T Y+ +N  L       R + DC+ CSR YH  KL + N + I++D K  C+ C+    K +  E   E  + C L K  R+RK P +CF  +E E+  +C  AS L  P   L +++ L+ + V
Sbjct:  955 TKQTQYYFMNNNLSF-----RGTIDCENCSRLYHAEKLPKTNLVFIITDAKLTCLPCDATLLKQE--EEQSEGPDPCELAKKPRYRKGPSECFDNNEHEDDADCGGASSL-SPSLWLMVALQLVLLWV 1074          
BLAST of voltage-dependent calcium channel subunit alpha-2 delta-1-like vs. nr
Match: gi|1168995838|ref|XP_020455167.1| (voltage-dependent calcium channel subunit alpha-2/delta-1-like isoform X2 [Monopterus albus])

HSP 1 Score: 59.6918 bits (143), Expect = 2.419e-7
Identity = 41/131 (31.30%), Postives = 63/131 (48.09%), Query Frame = 0
Query:    9 SSMSVSEYSFRMPEGMHR---CTTNTSYWSLNPELKSDDFHERISGDCKECSRDYHIYKLSQINALLIVSDPK--CISCNVPSYKDKPIEVD-PEALETCHLPKRFRKRPPKCFSRHE-EEIPECSSASPL 132
            S +  ++    +P+ M +    T  T ++ +N  L       + S DC+ CSR +H  KL + N + I++D K  C SC+    K +    D P+  E    P R+RK P  CF  +E EE P+C   S L
Sbjct:  929 SFLDAADMDDEVPDAMLKEVCITEQTQFYFMNNNLSV-----KGSVDCENCSRLFHAEKLPKTNLVFIIADAKLTCSSCDAKELKQEEEPSDGPDPCEMAQSP-RYRKGPGTCFDNNEHEEDPDCGGTSSL 1053          
BLAST of voltage-dependent calcium channel subunit alpha-2 delta-1-like vs. nr
Match: gi|1168995844|ref|XP_020455170.1| (voltage-dependent calcium channel subunit alpha-2/delta-1-like isoform X5 [Monopterus albus])

HSP 1 Score: 59.3066 bits (142), Expect = 2.441e-7
Identity = 41/131 (31.30%), Postives = 63/131 (48.09%), Query Frame = 0
Query:    9 SSMSVSEYSFRMPEGMHR---CTTNTSYWSLNPELKSDDFHERISGDCKECSRDYHIYKLSQINALLIVSDPK--CISCNVPSYKDKPIEVD-PEALETCHLPKRFRKRPPKCFSRHE-EEIPECSSASPL 132
            S +  ++    +P+ M +    T  T ++ +N  L       + S DC+ CSR +H  KL + N + I++D K  C SC+    K +    D P+  E    P R+RK P  CF  +E EE P+C   S L
Sbjct:  923 SFLDAADMDDEVPDAMLKEVCITEQTQFYFMNNNLSV-----KGSVDCENCSRLFHAEKLPKTNLVFIIADAKLTCSSCDAKELKQEEEPSDGPDPCEMAQSP-RYRKGPGTCFDNNEHEEDPDCGGTSSL 1047          
The following BLAST results are available for this feature:
BLAST of voltage-dependent calcium channel subunit alpha-2 delta-1-like vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000007383.619e-3641.56supercontig:LSalAtl2s:LSalAtl2s1118:23248:41219:-1... [more]
back to top
BLAST of voltage-dependent calcium channel subunit alpha-2 delta-1-like vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of voltage-dependent calcium channel subunit alpha-2 delta-1-like vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 20
Match NameE-valueIdentityDescription
gi|1126200710|ref|XP_019633684.1|1.240e-836.47PREDICTED: voltage-dependent calcium channel subun... [more]
gi|1108888022|ref|XP_019122324.1|1.955e-832.56PREDICTED: voltage-dependent calcium channel subun... [more]
gi|1308380531|ref|XP_023119102.1|2.322e-833.59voltage-dependent calcium channel subunit alpha-2/... [more]
gi|1308380537|ref|XP_023119117.1|2.344e-833.59voltage-dependent calcium channel subunit alpha-2/... [more]
gi|1308380528|ref|XP_023119094.1|2.368e-833.59voltage-dependent calcium channel subunit alpha-2/... [more]
gi|1308380534|ref|XP_023119110.1|2.413e-833.59voltage-dependent calcium channel subunit alpha-2/... [more]
gi|1228964991|ref|XP_022045850.1|2.791e-836.70voltage-dependent calcium channel subunit alpha-2/... [more]
gi|1079803039|ref|XP_018526509.1|1.361e-733.59PREDICTED: LOW QUALITY PROTEIN: voltage-dependent ... [more]
gi|1168995838|ref|XP_020455167.1|2.419e-731.30voltage-dependent calcium channel subunit alpha-2/... [more]
gi|1168995844|ref|XP_020455170.1|2.441e-731.30voltage-dependent calcium channel subunit alpha-2/... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold87_size395581supercontigscaffold87_size395581:26215..26837 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold87_size395581-snap-gene-0.15-mRNA-1maker-scaffold87_size395581-snap-gene-0.15-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold87_size395581:26215..26837-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold87_size395581-snap-gene-0.15 ID=maker-scaffold87_size395581-snap-gene-0.15|Name=voltage-dependent calcium channel subunit alpha-2 delta-1-like|organism=Tigriopus kingsejongensis|type=gene|length=623bp|location=Sequence derived from alignment at scaffold87_size395581:26215..26837- (Tigriopus kingsejongensis)
CTTTTTGGCCCTGCTCTTTTTGCCCGAAAGCTCCATGTCCGTGTCTGAGT ACAGCTTCAGAATGCCCGAAGGCATGCACAGGTGCACGACCAATACATCC TATTGGTCCCTCAATCCAGAGCTCAAAAGCGACGATTTCCACGAGAGGAT CTCGGGCGACTGCAAAGAATGCTCAAGAGACTATCACATCTACAAACTGT CCCAGATCAATGCCCTCCTCATTGTGTCCGATCCGAAATGCATAAGCTGC AACGTTCCGAGCTACAAGGACAAGCCTATTGAGGGTAAGAAATTTGGAGT CATCCAGGGAATCTCTATGTAACTAGTTTTGTTTTGCTTCAGTCGACCCA GAGGCGTTGGAAACGTGCCATTTGCCCAAGAGGTTTCGGAAAAGGCCTCC CAAATGTTTCTCCCGACACGAGGAGGTAAAGAACACATGCCAGAATTATA TCCAAAAATGCCCCCAATGCCATATGGTTTGATTTCTAGGAGATTCCAGA ATGCAGCTCCGCCTCGCCATTGTTTTTTCCATTCCAACTCCTGAAGCTCT CCATGGCGCTAATTCCCATTCTGGTATCCGTTGTCCTCGTCGTGGACTAG AAAGGTTGCGCGATTTACCAGCC
back to top
Synonyms
The feature 'voltage-dependent calcium channel subunit alpha-2 delta-1-like' has the following synonyms
Synonym
Tk12235
Add to Basket