plasma membrane calcium-transporting atpase 3 isoform 1, snap_masked-scaffold1040_size68023-processed-gene-0.3 (gene) Tigriopus kingsejongensis

Overview


Name	plasma membrane calcium-transporting atpase 3 isoform 1
Unique Name	snap_masked-scaffold1040_size68023-processed-gene-0.3
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of plasma membrane calcium-transporting atpase 3 isoform 1 vs. L. salmonis genes
Match: EMLSAG00000009230 (supercontig:LSalAtl2s:LSalAtl2s588:349813:378377:-1 gene:EMLSAG00000009230 transcript:EMLSAT00000009230 description:"maker-LSalAtl2s588-snap-gene-4.47")

HSP 1 Score: 145.591 bits (366), Expect = 5.590e-42
Identity = 74/98 (75.51%), Postives = 83/98 (84.69%), Query Frame = 0

Query:   17 VIGGELQERLIPVPYSKTSTDQAIRVVNAFRHGMDSEHLQQATSNPNIQRVLQKQASLSKRLSAANAAQLEAAANAAGGANTRIKIPETSFSHTETAV 114
            VIGG+LQERLIP+PYSK++TDQAIRVVNAFR GMDS+HLQQATSNPNIQRVLQKQASL+KRLS+A+     A  NA   A TRIK+ E S SHTETAV
Sbjct: 1120 VIGGDLQERLIPIPYSKSTTDQAIRVVNAFRTGMDSQHLQQATSNPNIQRVLQKQASLNKRLSSASNMPENAVGNAPVTAATRIKMIEHSHSHTETAV 1217

[Close]

BLAST of plasma membrane calcium-transporting atpase 3 isoform 1 vs. nr
Match: gi|1325304814|ref|XP_023334001.1| (uncharacterized protein LOC111705626 [Eurytemora affinis])

HSP 1 Score: 120.939 bits (302), Expect = 7.990e-33
Identity = 67/103 (65.05%), Postives = 77/103 (74.76%), Query Frame = 0

Query:   16 QVIGGELQERLIPVPYSKTSTDQAIRVVNAFRHGMDSEHLQQATSNPNIQRVLQKQASLSKRLSAANAA----QLEAAANAAGGANTRIKIPETSFSHTETAV 114
            QVIGG+ Q+RLIPVPYSK +TDQAIRVVNAFRHG+D+  +QQATSNPNIQRVLQKQASL+KRLSAA+A      L   +NA     T+        SHTETAV
Sbjct:   48 QVIGGDRQDRLIPVPYSKNTTDQAIRVVNAFRHGVDTPQVQQATSNPNIQRVLQKQASLNKRLSAASAVSDPDNLLHNSNALHQLKTK--------SHTETAV 142

[Close]

BLAST of plasma membrane calcium-transporting atpase 3 isoform 1 vs. nr
Match: gi|929375984|ref|XP_014098133.1| (PREDICTED: uncharacterized protein LOC106623224 [Bactrocera oleae])

HSP 1 Score: 97.4413 bits (241), Expect = 5.275e-24
Identity = 57/105 (54.29%), Postives = 73/105 (69.52%), Query Frame = 0

Query:   16 QVIGGELQERLIPVPYSKTSTDQAIRVVNAFRHGMDSEHLQQATSNPNIQRVLQKQASLSKRLSAANAAQLEAAANAAGGANTRIKIPE------TSFSHTETAV 114
            +VIGGELQERLIPVPYSK++TDQAIRVVNAFR G+D  + +   +N ++  VL+KQ+SLSKRLS  ++  +E A N        + IPE      +S SHTETAV
Sbjct:   18 KVIGGELQERLIPVPYSKSNTDQAIRVVNAFRQGLDGRYGEH--TNTSLAEVLRKQSSLSKRLSETSS--IEYADNIPD----ELTIPEIDVERLSSHSHTETAV 114

[Close]

BLAST of plasma membrane calcium-transporting atpase 3 isoform 1 vs. nr
Match: gi|1228403946|ref|XP_021961057.1| (plasma membrane calcium-transporting ATPase 2-like [Folsomia candida])

HSP 1 Score: 105.145 bits (261), Expect = 6.478e-24
Identity = 63/103 (61.17%), Postives = 74/103 (71.84%), Query Frame = 0

Query:   16 QVIGGELQERLIPVPYSKTSTDQAIRVVNAFRHGMDSEHLQQATSNPNIQRVLQKQASLSKRLSAANAAQLEAAANAAGGANTRIKIPE----TSFSHTETAV 114
            QVIGGELQERLIPVPYSK+STDQAIRVVNAFR G+D+ + ++  SNP+I  VLQKQASLSKRLS    + +E A N        +  PE    +S SHTETAV
Sbjct: 1100 QVIGGELQERLIPVPYSKSSTDQAIRVVNAFRQGLDTRYGER--SNPSIAAVLQKQASLSKRLS--QTSSIEYADNYP----YEVSAPEFERLSSRSHTETAV 1194

[Close]

BLAST of plasma membrane calcium-transporting atpase 3 isoform 1 vs. nr
Match: gi|936698698|ref|XP_014227337.1| (plasma membrane calcium-transporting ATPase 2 isoform X4 [Trichogramma pretiosum])

HSP 1 Score: 104.76 bits (260), Expect = 8.839e-24
Identity = 60/105 (57.14%), Postives = 73/105 (69.52%), Query Frame = 0

Query:   16 QVIGGELQERLIPVPYSKTSTDQAIRVVNAFRHGMDSEHLQQATSNPNIQRVLQKQASLSKRLSAANAAQLEAAANAAGGANTRIKIPE------TSFSHTETAV 114
            QVIGGELQERLIPVPYSK+STDQAIRVVNAFR G+DS + +   SN N+  VL+KQ+SLSKRLS       +++ + A      + IPE      +S SHTETAV
Sbjct: 1099 QVIGGELQERLIPVPYSKSSTDQAIRVVNAFRQGLDSRYGEH--SNTNLAEVLRKQSSLSKRLSQ------QSSLDYADNLPDELTIPEIDVERLSSHSHTETAV 1195

[Close]

BLAST of plasma membrane calcium-transporting atpase 3 isoform 1 vs. nr
Match: gi|1060260182|ref|XP_017869276.1| (PREDICTED: uncharacterized protein LOC108617918, partial [Drosophila arizonae])

HSP 1 Score: 96.6709 bits (239), Expect = 1.199e-23
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 0

Query:   16 QVIGGELQERLIPVPYSKTSTDQAIRVVNAFRHGMDSEHLQQATSNPNIQRVLQKQASLSKRLSAANAAQLEAAANAAGGANTRIKIPE------TSFSHTETAV 114
            +VIGGELQERLIPVPYSK++TDQAIRVVNAFR G+D+ + +   +N ++  VL+KQ SLSKRLS        ++ + A      + IPE      +S SHTETAV
Sbjct:   22 KVIGGELQERLIPVPYSKSNTDQAIRVVNAFRQGLDARYGEH--TNTSLAEVLRKQTSLSKRLSET------SSIDYADNIPDELTIPEIDVERLSSHSHTETAV 118

[Close]

BLAST of plasma membrane calcium-transporting atpase 3 isoform 1 vs. nr
Match: gi|766923352|ref|XP_011506295.1| (PREDICTED: plasma membrane calcium-transporting ATPase 2 isoform X3 [Ceratosolen solmsi marchali])

HSP 1 Score: 104.375 bits (259), Expect = 1.382e-23
Identity = 60/105 (57.14%), Postives = 72/105 (68.57%), Query Frame = 0

Query:   16 QVIGGELQERLIPVPYSKTSTDQAIRVVNAFRHGMDSEHLQQATSNPNIQRVLQKQASLSKRLSAANAAQLEAAANAAGGANTRIKIPE------TSFSHTETAV 114
            QVIGGELQERLIPVPYSK+STDQAIRVVNAFR G+DS + +   SN N+  VL+KQ+SLSKRLS        ++ + A      + IPE      +S SHTETAV
Sbjct: 1101 QVIGGELQERLIPVPYSKSSTDQAIRVVNAFRQGLDSRYGEH--SNTNLAEVLRKQSSLSKRLSQT------SSIDYADNLPDELTIPEIDVERLSSHSHTETAV 1197

[Close]

BLAST of plasma membrane calcium-transporting atpase 3 isoform 1 vs. nr
Match: gi|1314963177|ref|XP_023162458.1| (uncharacterized protein LOC111593719 [Drosophila hydei])

HSP 1 Score: 97.0561 bits (240), Expect = 2.820e-23
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 0

Query:   16 QVIGGELQERLIPVPYSKTSTDQAIRVVNAFRHGMDSEHLQQATSNPNIQRVLQKQASLSKRLSAANAAQLEAAANAAGGANTRIKIPE------TSFSHTETAV 114
            +VIGGELQERLIPVPYSK++TDQAIRVVNAFR G+D+ + +   +N ++  VL+KQ SLSKRLS        ++ + A      + IPE      +S SHTETAV
Sbjct:   60 KVIGGELQERLIPVPYSKSNTDQAIRVVNAFRQGLDARYGEH--TNTSLAEVLRKQTSLSKRLSET------SSIDYADNIPDELTIPEIDVERLSSHSHTETAV 156

[Close]

BLAST of plasma membrane calcium-transporting atpase 3 isoform 1 vs. nr
Match: gi|1321309321|ref|XP_023296725.1| (plasma membrane calcium-transporting ATPase 2 isoform X6 [Lucilia cuprina])

HSP 1 Score: 102.064 bits (253), Expect = 7.263e-23
Identity = 61/105 (58.10%), Postives = 72/105 (68.57%), Query Frame = 0

Query:   16 QVIGGELQERLIPVPYSKTSTDQAIRVVNAFRHGMDSEHLQQATSNPNIQRVLQKQASLSKRLSAANAAQLEAAANAAGGANTRIKIPE------TSFSHTETAV 114
            QVIGGELQERLIPVPYSK+STDQAIRVVNAFR G+D+ +   A  N ++  VL+KQ SLSKRLS  ++  LE A N        + IPE      +S SHTETAV
Sbjct: 1087 QVIGGELQERLIPVPYSKSSTDQAIRVVNAFRQGLDARYGDHA--NTSLAEVLRKQTSLSKRLSETSS--LEYADNIP----DELTIPEIDVERLSSHSHTETAV 1183

[Close]

BLAST of plasma membrane calcium-transporting atpase 3 isoform 1 vs. nr
Match: gi|1321309317|ref|XP_023296723.1| (plasma membrane calcium-transporting ATPase 2 isoform X4 [Lucilia cuprina])

HSP 1 Score: 102.064 bits (253), Expect = 8.008e-23
Identity = 61/105 (58.10%), Postives = 72/105 (68.57%), Query Frame = 0

Query:   16 QVIGGELQERLIPVPYSKTSTDQAIRVVNAFRHGMDSEHLQQATSNPNIQRVLQKQASLSKRLSAANAAQLEAAANAAGGANTRIKIPE------TSFSHTETAV 114
            QVIGGELQERLIPVPYSK+STDQAIRVVNAFR G+D+ +   A  N ++  VL+KQ SLSKRLS  ++  LE A N        + IPE      +S SHTETAV
Sbjct: 1099 QVIGGELQERLIPVPYSKSSTDQAIRVVNAFRQGLDARYGDHA--NTSLAEVLRKQTSLSKRLSETSS--LEYADNIP----DELTIPEIDVERLSSHSHTETAV 1195

[Close]

BLAST of plasma membrane calcium-transporting atpase 3 isoform 1 vs. nr
Match: gi|1133419899|ref|XP_019865510.1| (PREDICTED: LOW QUALITY PROTEIN: plasma membrane calcium-transporting ATPase 2 [Aethina tumida])

HSP 1 Score: 101.679 bits (252), Expect = 9.821e-23
Identity = 60/105 (57.14%), Postives = 74/105 (70.48%), Query Frame = 0

Query:   16 QVIGGELQERLIPVPYSKTSTDQAIRVVNAFRHGMDSEHLQQATSNPNIQRVLQKQASLSKRLSAANAAQLEAAANAAGGANTRIKIPE------TSFSHTETAV 114
            QVIGGELQERLIPVPYSK+STDQAIRVVNAFR G+D+ + +   SN ++  VL+KQ+SLSKRLS  ++  +E A N        + IPE      +S SHTETAV
Sbjct: 1105 QVIGGELQERLIPVPYSKSSTDQAIRVVNAFRQGLDARYGEH--SNTSLAEVLRKQSSLSKRLSQTSS--IEYADNIP----DELTIPEIDVERLSSHSHTETAV 1201

The following BLAST results are available for this feature:

BLAST of plasma membrane calcium-transporting atpase 3 isoform 1 vs. L. salmonis genes
BLAST of plasma membrane calcium-transporting atpase 3 isoform 1 vs. SwissProt
BLAST of plasma membrane calcium-transporting atpase 3 isoform 1 vs. nr

BLAST of plasma membrane calcium-transporting atpase 3 isoform 1 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1


Match Name	E-value	Identity	Description
EMLSAG00000009230	5.590e-42	75.51	supercontig:LSalAtl2s:LSalAtl2s588:349813:378377:-...	[more]

BLAST of plasma membrane calcium-transporting atpase 3 isoform 1 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of plasma membrane calcium-transporting atpase 3 isoform 1 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1325304814\|ref\|XP_023334001.1\|	7.990e-33	65.05	uncharacterized protein LOC111705626 [Eurytemora a...	[more]
gi\|929375984\|ref\|XP_014098133.1\|	5.275e-24	54.29	PREDICTED: uncharacterized protein LOC106623224 [B...	[more]
gi\|1228403946\|ref\|XP_021961057.1\|	6.478e-24	61.17	plasma membrane calcium-transporting ATPase 2-like...	[more]
gi\|936698698\|ref\|XP_014227337.1\|	8.839e-24	57.14	plasma membrane calcium-transporting ATPase 2 isof...	[more]
gi\|1060260182\|ref\|XP_017869276.1\|	1.199e-23	52.38	PREDICTED: uncharacterized protein LOC108617918, p...	[more]
gi\|766923352\|ref\|XP_011506295.1\|	1.382e-23	57.14	PREDICTED: plasma membrane calcium-transporting AT...	[more]
gi\|1314963177\|ref\|XP_023162458.1\|	2.820e-23	52.38	uncharacterized protein LOC111593719 [Drosophila h...	[more]
gi\|1321309321\|ref\|XP_023296725.1\|	7.263e-23	58.10	plasma membrane calcium-transporting ATPase 2 isof...	[more]
gi\|1321309317\|ref\|XP_023296723.1\|	8.008e-23	58.10	plasma membrane calcium-transporting ATPase 2 isof...	[more]
gi\|1133419899\|ref\|XP_019865510.1\|	9.821e-23	57.14	PREDICTED: LOW QUALITY PROTEIN: plasma membrane ca...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold1040_size68023	supercontig	scaffold1040_size68023:58016..60929 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	-

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold1040_size68023-processed-gene-0.3-mRNA-1	snap_masked-scaffold1040_size68023-processed-gene-0.3-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold1040_size68023:58016..60929+

gene from alignment at scaffold1040_size68023:58016..60929+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold1040_size68023-processed-gene-0.3 ID=snap_masked-scaffold1040_size68023-processed-gene-0.3|Name=plasma membrane calcium-transporting atpase 3 isoform 1|organism=Tigriopus kingsejongensis|type=gene|length=2914bp|location=Sequence derived from alignment at scaffold1040_size68023:58016..60929+ (Tigriopus kingsejongensis)
ATGATCCAAAACTCGATCCCCACCAAAAATTCCAACCCCCCACCACAGGT
CATTGGGGGCGAGCTTCAAGAGCGTCTCATTCCCGTGCCGTATAGTAAAA
CCTCCACGGATCAGGCAGTAAGGCCCACATGATCATCTTCTTGTTGCATC
TAGAAGTAACACACTATCGTACAACAGAGACACTGTACCACACACAGCCA
GCTATTTTTGTTTGTTCATAAATTCTTATGATTATCATCCATCCTTACGC
TACCTCGTACACTTCCAATCTGCTGTAGCTGCTAGGTCACGTGTCTAGAG
CCTGACCAACGCTCTATCAGTGTTGTCTTGCCATTTTATGCACGCACACA
ATCACCGGCTTGTGTCTGCCTTGAGTGTCGCAAACATTGTCGACAATTTG
GGCGCCAAGCTCCAATGATCCACGATTTTGAACCCCCGAATGGGCCGACT
AAATCCATGTTGTCTTCTCGTCAACCTGGTGTCTGGTTGAACCCGCTCGC
ACGTCTCTTGCTTTCGCCCTCGTTCTTTCCGTCCCTGTATTCGTAGTTAT
CGGAGAGGCAGTGATATTGACCTCTTATAGTGCATGTTGAACCGTAGTGG
AGCCCGAGGCCAGTAGTAGTGGCCTCGACAACCATGCTTCAATGCCCAGT
AGACACACATATAAGTAGATTTGTGCCAGTGTGACCAAAATCGCGATGAT
TCAATGATGAACAACGACTAGAGACAACAATCGTGCCTGTACAAGCCTCT
CTCTGAGTTAAAGGAGGGCAGAATCCTCCATAGTCTAAATCAATAAAAGT
AGTTCCGATCAGAGAGACTTCCTTAGATTTTCTGCCTTCATGAACACTCA
CTAAACTTTCATTTTCATCTAGTTCATTTAGTTCCGCGGTTTTCCGCAAC
TTGGCCCACCCAACAAGGTCTTCGGGGTCCTTTCTGCGTTTCATCTTCTT
GCCAGACTCTTTTAGCTGAACACGCCACTTCCTTTGAACTGATCCAATCC
ATCCACGATACTTAGTCATTCGCTCAGTTCTCTCTCTCTCTCCATCCTTA
AGTTCAGTTCCTCTTTGGCCCCAATTAAACTCGATTTCGTTGCTCCCCTC
GTTAAAAAGCCTTACAACATAGTCTAGCCGATTGCTTTTCTCCTCAAACG
AGTGTATTCTTGAACGTTTGCTGATGATCAGGGACCCAACTGCATCTCAG
TGATGATGATGACTGAAGCATTTTTGTCGCAAATTTCGAATTCTTGCCCA
AATATCGGAGTGCTTACGAACTCAAAGTGATCTGCTTCGCTTCTCCTACT
CATCGTCCTGGATTGTGAGACACACAAGTACAGCTACAAACAAACAGCCT
CTAGGTGATGATTGCAATGAAAAGGTACACAACAATCCGGATTTTTTGTA
CCAACCCCACCCCGATTTGCTCGTCATTGTAGTATATGAATGCATGTGTC
CGACTGAATGCTTTTGTTGCATCACCTATTTCTTACCCTTCTAAAACGCA
CAAAAATAAGCCCCACACCCTCACAAACAGCCCACACTCAGACATCACAC
CCTACTATTCGGGGGATCGAATCGTCCCAGGACACGAGATTCGATTGCCC
CTGTCGACGTGTAGCAAACCAGACAATGGCCGAATGTGACCGTGCCGAGT
AGTAGCTGTTTTCAGGCTTATTTCGTCTTTGACTAGTGTTTCCCCGCAGT
CCATGCTTTGTGTCTCTGTTTGTATAGCAATGTATATTATGTGTGTATAA
ACAGTATATATTGACGGCGGTTCAGTTTCAAAGATCCGTGGGCACTTTTG
ACCGCTGGAAAATGTAGCTTGACCAAACACACCAAGGTTTCTTAGTTGTC
GGCTTGGCCTCTCAAGGCCCCTTGATTGGATGTGTGTCGCTTGAGTGTTT
GTTCTCTTCATTTACGTACCTTGGATTCTCTACAGAGGAAATTGCCATAC
TTATCTGCGAGGTTAACACAACTACGAACGAGTCCCTAACCGAAACGATG
CCCAACTGACAGTTTTTTTTCTTCATTTTTTATCGCTTTCTTTCCTTGGA
ATGTGATTGTTTTGTGTTCTTTCCCCCCTTTGTCTGCCTTTGATTCAGTC
TCCTAACCCCCAATGTGGACTCCAACTAAATGGATGGACACAGTTAACAA
TTAAGCCTTGATATCGCGAATCTGGAATGATGAGTGTGTGGTAGTAGCTA
CTACATGTGGTAACCAGCTGTACTGCGCCATGTATGTACCTTCACCTCGG
TTGCCTCTGTTCGTGTCTGTTTCCCACACCGCCAAGAGCGAGGAGGACCG
ATATTTCATTGGCGAATGTCTTCGAGCTCTCTCTCTCTCTCAGTCTGATC
GTGACTCGTACAACTTCACCCTGTAATCATTGAGCTAACAGGCTGTAGTT
AACTTCAACTACTAGCATATTCGGACACTTGAGCTTTCACCTAAGCGTCT
TGATCATGAAACTTTCAATGTCACCTTCTCCCTCGCCTTCTTCCGTATCT
CTTGTATCACCACGATGAACTGCTCTTCTACCATGTCAACATACTTTATC
CTCTCTCTCTTCTCACATATATCATCATCATCATTATTATCATTATCATC
ATTATTATAATACTCCTGGCACGCCTCTAGACTTGCTCGTGGCTCCCACT
GCCAGACTCGCCTCACGCTCTCCACCCTCTTTGCAGATCCGCGTCGTTAA
CGCCTTTCGCCACGGCATGGACAGCGAACACCTGCAGCAAGCCACCTCGA
ATCCGAATATCCAGCGGGTTCTCCAAAAGCAGGCCTCTTTGTCGAAGCGG
CTGTCGGCGGCCAATGCGGCCCAGTTGGAAGCGGCGGCCAATGCGGCGGG
CGGAGCCAACACCCGAATCAAAATCCCCGAGACCTCATTCTCGCACACAG
AGACGGCTGTCTGA

Synonyms

The feature 'plasma membrane calcium-transporting atpase 3 isoform 1' has the following synonyms


Synonym
Tk07634

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