carnitine dehydratase, snap_masked-scaffold1_size3401120-processed-gene-1.35 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of carnitine dehydratase vs. L. salmonis genes
Match: EMLSAG00000001226 (supercontig:LSalAtl2s:LSalAtl2s11:421277:423175:1 gene:EMLSAG00000001226 transcript:EMLSAT00000001226 description:"maker-LSalAtl2s11-augustus-gene-4.11") HSP 1 Score: 189.119 bits (479), Expect = 3.023e-57 Identity = 98/215 (45.58%), Postives = 142/215 (66.05%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDY-DVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQD-GPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYE--AKSSGKGQVVDAAISDCTAHLSTMLH-GLMFNNRWQDQRGSNLLDGGAHHYNSYRCADDNLHL 210 GA V+R++ + Y DV RGK+S++++LKS +G +L++ +DV +E FRPGVME+L+L P+ + NP+L+YAR++G+GQ+ PL AGHDINYI+LSGALS G + KPV P+N++GDFGGG L AFGI+AA+YE SSGKGQ++D I+ ++LST L+ + W + RG N+LD GAH Y Y + ++ Sbjct: 27 FGASVIRVDNHPD----AVVYPDVSCRGKKSISLNLKSSKGRSIVKKLVNNSDVFLESFRPGVMEKLQLCPDVLTKENPSLIYARLSGYGQEHNPLTYRAGHDINYISLSGALSKIGRVNEKPVPPINIVGDFGGGGLTCAFGIIAALYERSVNSSGKGQIIDCGITQGASYLSTWLYQSKNIPHLWGNPRGENVLDTGAHFYEVYETKEPGKYI 237
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|341940628|sp|O09174.4|AMACR_MOUSE (RecName: Full=Alpha-methylacyl-CoA racemase; AltName: Full=2-methylacyl-CoA racemase) HSP 1 Score: 195.667 bits (496), Expect = 2.814e-58 Identity = 100/207 (48.31%), Postives = 133/207 (64.25%), Query Frame = 0 Query: 1 MGADVVRLER--RQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205 GA+VVR+ R G+N L RGKRS+A+DLK QG + +RADVL+E FR GVME+L+LGPE + NP L+YAR++G+GQ G + AGHDINY+ALSG LS G P P+NLL DFGGG L GI+ A++E SG+GQV+D+++ + TA+LS+ L W+ RG N+LDGGA Y +Y+ AD Sbjct: 27 FGAEVVRVNRLGSTGENFLA-------RGKRSLALDLKRSQGVTVLRRMCARADVLLEPFRCGVMEKLQLGPETLLQDNPKLIYARLSGFGQSGIFSKVAGHDINYLALSGVLSKIGRSGENPYPPLNLLADFGGGGLMCTLGIVLALFERTRSGRGQVIDSSMVEGTAYLSSFLWKTQPMGLWKQPRGQNILDGGAPFYTTYKTAD 226
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|313104070|sp|Q9UHK6.2|AMACR_HUMAN (RecName: Full=Alpha-methylacyl-CoA racemase; AltName: Full=2-methylacyl-CoA racemase) HSP 1 Score: 190.274 bits (482), Expect = 3.466e-56 Identity = 101/207 (48.79%), Postives = 130/207 (62.80%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDYDV--LNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205 GA VVR++R G YDV L RGKRS+ +DLK +G L R+DVL+E FR GVME+L+LGPE NP L+YAR++G+GQ G AGHDINY+ALSG LS G P P+NLL DF GG L A GI+ A+++ +GKGQV+DA + + TA+LS+ L + W+ RG N+LDGGA Y +YR AD Sbjct: 27 FGARVVRVDRP------GSRYDVSRLGRGKRSLVLDLKQPRGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARLSGFGQSGSFCRLAGHDINYLALSGVLSKIGRSGENPYAPLNLLADFAGGGLMCALGIIMALFDRTRTGKGQVIDANMVEGTAYLSSFLWKTQKLSLWEAPRGQNMLDGGAPFYTTYRTAD 227
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|13637497|sp|P70473.3|AMACR_RAT (RecName: Full=Alpha-methylacyl-CoA racemase; AltName: Full=2-arylpropionyl-CoA epimerase; AltName: Full=2-methylacyl-CoA racemase) HSP 1 Score: 186.808 bits (473), Expect = 5.888e-55 Identity = 100/205 (48.78%), Postives = 127/205 (61.95%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205 GA+VV ++R N L RGKRS+A+DLK G + +RADVL+E FR GVME+L+LGPE + NP L+YAR++G+GQ G + AGHDINY+ALSG LS G P P+NLL DFGGG L GI+ A++E SG GQV+DA + + TA+LST L W RG NLLDGGA Y +Y+ AD Sbjct: 27 FGAEVVLVDRLGSVN----HPSHLARGKRSLALDLKRSPGAAVLRRMCARADVLLEPFRCGVMEKLQLGPETLRQDNPKLIYARLSGFGQSGIFSKVAGHDINYVALSGVLSKIGRSGENPYPPLNLLADFGGGGLMCTLGILLALFERTRSGLGQVIDANMVEGTAYLSTFLWKTQAMGLWAQPRGQNLLDGGAPFYTTYKTAD 227
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|74620364|sp|Q8J0F0.1|CEFD2_ACRCH (RecName: Full=Isopenicillin N epimerase component 2; Short=IPN epimerase component 2; AltName: Full=Isopenicillin N epimerase acyl-CoA racemase component) HSP 1 Score: 156.377 bits (394), Expect = 2.894e-43 Identity = 91/205 (44.39%), Postives = 118/205 (57.56%), Query Frame = 0 Query: 2 GADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGP-EDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205 GA V+R+ D DVL R K S+ +DLK + L +LSRADVLI+ FRPGV+ERL L P E +AN LV AR+TG+ +DG AGHDINY+A+SG L+ G P P N+LGDF GG GI+ A+ ++G GQVV+A + D +A+L+TM W RG N+LDGG Y +YR D Sbjct: 34 GASVLRI-----DGPRSPKGDVLARNKSSICIDLKHPPSRKVLLSILSRADVLIDPFRPGVLERLGLSPTEVLLKANARLVVARLTGFRRDGKYQDMAGHDINYLAVSGVLAMLGRAGENPFPPANILGDFAGGGAMCVVGILLALVSRDATGLGQVVEANMVDGSAYLATMPRLATKTPFWGSPRGENVLDGGCPWYATYRTKD 233
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|29840845|sp|Q09618.3|YS74_CAEEL (RecName: Full=CaiB/baiF CoA-transferase family protein ZK892.4) HSP 1 Score: 130.954 bits (328), Expect = 4.291e-34 Identity = 74/211 (35.07%), Postives = 119/211 (56.40%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAF-GDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVY-EAKSSGKGQVVDAAISDCTAHLSTML-HGLMFNNRWQDQRGSNLLDGGAHHYNSYRCADDNL 208 GADV ++++ I+ LNRGK +DLK+ + + +L +DVL++ +RPG +E++ L P W N L+ +++G+GQ G ++ GHDINY+ALSG L F G +P P N+L DF GG L AFGI++A+Y + + GKG ++D ++++ A+LS+ + H N + D+ L G Y +Y+ DD Sbjct: 29 FGADVTVIDKKNP----AIE-QRLNRGKTMKQLDLKNPEDIKKVRDLCQTSDVLLDPYRPGTLEKMGLDPSTLWNNNKGLIICKISGYGQTGRMSQETGHDINYVALSGMLPTFSGVNATRPWPPANMLADFAGGGLSAAFGILSAIYARSHNGGKGCLLDCSMTEGVAYLSSFVQHYYDQPNLFTDKYA--LFSGECPIYRTYKTKDDKF 232
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|81542073|sp|Q9I701.1|BAUB_PSEAE (RecName: Full=Beta-alanine degradation protein BauB) HSP 1 Score: 120.553 bits (301), Expect = 6.073e-33 Identity = 58/92 (63.04%), Postives = 67/92 (72.83%), Query Frame = 0 Query: 247 RPQAVPTVQLDNDKVLVTEWRFPPGGETGWHRHGMDYVVVPQTTGQLLIELSDGEMRADLTTGVAYARVEGTEHNVVNDNDFEFVFVEVELK 338 RPQAVPTVQ+DN +V+VTEWRF PG ETG HRHG DYVVVP T G LL+E +G+ A L G AY R G EHNV+N + E VFVE E+K Sbjct: 4 RPQAVPTVQVDNAEVIVTEWRFAPGAETGRHRHGHDYVVVPLTDGTLLLETPEGDRHAPLVAGQAYFRKAGVEHNVINASAHEVVFVETEIK 95
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|19861453|sp|P76518.2|ACOCT_ECOLI (RecName: Full=Acetyl-CoA:oxalate CoA-transferase; Short=ACOCT; AltName: Full=Acetyl-coenzyme A transferase; AltName: Full=CoA:oxalate CoA-transferase) HSP 1 Score: 111.694 bits (278), Expect = 1.097e-26 Identity = 73/187 (39.04%), Postives = 101/187 (54.01%), Query Frame = 0 Query: 1 MGADVVRLE--------RRQGDNLLG--IDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLM 177 MGA V+++E R G + G + Y +N GK SV +DLK++ + +L +ADVL E FRPG ME+L E E NP L+YA +G+G GPL + +D A+SG + G D PV L D GG +YL GI++A+Y + S +G VD A+ D T LS + HGLM Sbjct: 34 MGARVIKVEPPGHGDDTRTFGPYVDGQSLYYSFINHGKESVVLDLKNDHDKSIFINMLKQADVLAENFRPGTMEKLGFSWETLQEINPRLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYPDAPPVRVGTSLADLCGG-VYLFSGIVSALYGREKSQRGAHVDIAMFDAT--LSFLEHGLM 217
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|694016538|sp|A9X6P9.1|ACOCT_ACEAC (RecName: Full=Acetyl-CoA:oxalate CoA-transferase; Short=ACOCT; AltName: Full=Acetyl-coenzyme A transferase; AltName: Full=CoA:oxalate CoA-transferase; AltName: Full=CoAT3) HSP 1 Score: 107.071 bits (266), Expect = 6.430e-25 Identity = 63/158 (39.87%), Postives = 93/158 (58.86%), Query Frame = 0 Query: 21 YDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPV-MPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLM 177 + +NRGK S+ ++LK E LE++ +ADVL E FRPGVM+RL E+ + NP L+YA +G+GQ GPLA +D A+SG + A G DG P + L D GG +++ GI +A+Y + +GKG +D ++ D T L+ + H LM Sbjct: 67 FSFVNRGKESIVLNLKDEGDRAIFLEMVRKADVLAENFRPGVMDRLGFNYEELAKINPRLIYASSSGFGQTGPLAHYPAYDTIVQAMSGIMMATGFPDGPPTRVGGTSLSDLCGG-VFMFCGIASALYARERTGKGAHIDVSMFDGT--LAFLQHALM 221
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|39931310|sp|O87838.1|FCTA_STRCO (RecName: Full=Formyl-CoA:oxalate CoA-transferase; Short=FCOCT; AltName: Full=Formyl-coenzyme A transferase; Short=Formyl-CoA transferase) HSP 1 Score: 106.301 bits (264), Expect = 1.495e-24 Identity = 63/179 (35.20%), Postives = 107/179 (59.78%), Query Frame = 0 Query: 1 MGADVVRLERRQGD-------NLLGID---YDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHL 169 +GADVV+LE GD +L +D + +LN KRS+ ++ KSE+G E EL+ R+DV++E F PG ++R+ + E NP +VYA + G+G+ GP + +++ A+ G++S G +DG P+ +GD G G +++ GI+AA+Y+ + +G+GQ V+ A+ +L Sbjct: 30 LGADVVKLEAPHGDITRGQLRDLPDVDSLYFTMLNCNKRSITLNTKSERGKEILTELIRRSDVMVENFGPGAVDRMGFTWDRVKEINPRIVYASIKGFGE-GPYTAFKAYEVVAQAMGGSMSTTGFEDGPPLATGAQIGDSGTG-VHVVAGILAALYQREHTGRGQRVNVAMQHAVLNL 206
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|39931489|sp|Q82M40.1|FCTA_STRAW (RecName: Full=Formyl-CoA:oxalate CoA-transferase; Short=FCOCT; AltName: Full=Formyl-coenzyme A transferase; Short=Formyl-CoA transferase) HSP 1 Score: 103.99 bits (258), Expect = 8.804e-24 Identity = 62/179 (34.64%), Postives = 106/179 (59.22%), Query Frame = 0 Query: 1 MGADVVRLERRQGD-------NLLGID---YDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHL 169 +GADVV+LE GD +L +D + +LN KRS+ ++ K+E+G E EL+ R+DV++E F PG ++R+ + + NP +VYA + G+G DGP +++ A+ G++S G +DG P+ +GD G G ++ GI+AA+Y+ +++G+GQ V+ A+ +L Sbjct: 29 LGADVVKLEAPTGDITRGQLRDLPDVDSLYFTMLNCNKRSITLNTKTERGKEILTELIRRSDVMVENFGPGAVDRMGFTWDRIRDINPRIVYASIKGFG-DGPYTDFKAYEVVAQAMGGSMSTTGFEDGPPLATGAQIGDSGTG-IHAVAGILAALYQRENTGRGQRVNVAMQHAVLNL 205
BLAST of carnitine dehydratase vs. nr
Match: gi|1222215597|ref|WP_090270218.1| (CoA transferase [Litorimicrobium taeanense] >gi|1103310055|emb|SEQ59434.1| alpha-methylacyl-CoA racemase [Litorimicrobium taeanense]) HSP 1 Score: 275.404 bits (703), Expect = 4.866e-87 Identity = 130/207 (62.80%), Postives = 168/207 (81.16%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCADDN 207 +GADVVRLER Q YDVL+RG+RSV+VDLKS++G +TAL+L+S+AD LIEGFRPGVMERL LGPE C E NPALV+ RMTGWGQ GPLA++AGHDINYI+L+GAL+A G + PV P+NL+GDFGGG++YLA GI++A+ EAKSSG+GQVVDAA++D AHL ++++ + RW D+R SNLLDG A Y +++CAD++ Sbjct: 28 LGADVVRLERPQNGASKESAYDVLSRGRRSVSVDLKSKEGVDTALQLISKADALIEGFRPGVMERLGLGPEVCLELNPALVFGRMTGWGQFGPLANAAGHDINYISLTGALAAIGTAESGPVAPLNLVGDFGGGSMYLAIGILSAILEAKSSGQGQVVDAAMTDGAAHLMSLMYSMKNAGRWSDERASNLLDGSAPFYGTFKCADES 234
BLAST of carnitine dehydratase vs. nr
Match: gi|1200334498|gb|OUU54944.1| (carnitine dehydratase [Proteobacteria bacterium TMED61]) HSP 1 Score: 273.863 bits (699), Expect = 2.042e-86 Identity = 134/206 (65.05%), Postives = 162/206 (78.64%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFG-DKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205 MGADVVR++R G N LG+ DVLNRG+RSVA++LKS +G T LEL++RAD +IEGFRPGVMERL LGP++C NP LVY RMTGWGQDGPLA +AGHDINYIA++G L A G DK P P+NL+GDFGGGALYLAFG++ A+ E + SGKGQVVDAA+ D AHL TM++GL+ +W DQR NLLDGGAH Y ++ CAD Sbjct: 30 MGADVVRIDREGGTNPLGLKVDVLNRGRRSVALNLKSSEGVTTCLELIARADAVIEGFRPGVMERLGLGPDECLAKNPRLVYGRMTGWGQDGPLAQAAGHDINYIAIAGVLDAIGTDKAVTP--PLNLVGDFGGGALYLAFGVVXALLEVRGSGKGQVVDAAMVDGAAHLMTMMYGLLQQGQWTDQRQDNLLDGGAHFYGTFECAD 233
BLAST of carnitine dehydratase vs. nr
Match: gi|737775053|ref|WP_035743063.1| (CoA transferase [Haematobacter missouriensis] >gi|672903451|gb|KFI33057.1| hypothetical protein CG51_16005 [Haematobacter missouriensis] >gi|1207784202|gb|OWJ79830.1| CoA transferase [Haematobacter missouriensis] >gi|1207791367|gb|OWJ86583.1| CoA transferase [Haematobacter missouriensis]) HSP 1 Score: 265.774 bits (678), Expect = 2.611e-83 Identity = 132/205 (64.39%), Postives = 162/205 (79.02%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205 MGA+V+R+ER ++LLG+DYD+LNRG+ + +DLK+ + TA L+SRAD LIEG RPGVMERL LGP D E NP LVY RMTGWGQ GPLA +AGHDINYI+LSGAL A G ++ P +P+NL+GDFGGGALYLAFG+ AA+ EA SG+GQVVDAAI+D TAHL +M++G+ RWQD+RG+NLLDGGA Y YRCAD Sbjct: 32 MGAEVIRIERPGSESLLGLDYDILNRGRGFIRLDLKNAEDRTTARGLVSRADALIEGMRPGVMERLGLGPSDFPE-NPKLVYGRMTGWGQTGPLAPAAGHDINYISLSGALHAIGPEE-MPAVPLNLIGDFGGGALYLAFGMAAALLEAARSGRGQVVDAAITDGTAHLMSMIYGMRAGGRWQDRRGANLLDGGAPEYGCYRCAD 234
BLAST of carnitine dehydratase vs. nr
Match: gi|1208952285|ref|WP_088215052.1| (CoA transferase [Haematobacter genomosp. 1] >gi|1207783421|gb|OWJ79076.1| CoA transferase [Haematobacter genomosp. 1]) HSP 1 Score: 265.003 bits (676), Expect = 5.255e-83 Identity = 131/205 (63.90%), Postives = 162/205 (79.02%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205 MGA+V+R+ER ++LLG+DYD+LNRG+ + +DLK+ + TA L+SRAD LIEG RPGVMERL LGP+D E NP LVY RMTGWGQ GPLA +AGHDINYI+LSGAL A G ++ P +P+NL+GDFGGGALYLAFG+ AA+ EA SG+GQVVDAAI+D T HL +M++G+ RWQD+RG+NLLDGGA Y YRCAD Sbjct: 29 MGAEVIRIERPGSESLLGLDYDILNRGRGFIRLDLKNAEDRATARALVSRADALIEGMRPGVMERLGLGPDDFPE-NPRLVYGRMTGWGQTGPLAPAAGHDINYISLSGALHAIGPQE-MPAVPLNLIGDFGGGALYLAFGMAAALLEAARSGRGQVVDAAITDGTVHLMSMIYGMRAGGRWQDRRGANLLDGGAPEYGCYRCAD 231
BLAST of carnitine dehydratase vs. nr
Match: gi|1200313573|gb|OUU34746.1| (carnitine dehydratase [Proteobacteria bacterium TMED51] >gi|1200337527|gb|OUU57862.1| carnitine dehydratase [Candidatus Endolissoclinum sp. TMED55]) HSP 1 Score: 265.003 bits (676), Expect = 5.465e-83 Identity = 129/205 (62.93%), Postives = 158/205 (77.07%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205 MGADVVR++R G N L + DVLNRG+RSVA++LK+ +G TAL L++RAD +IEG+RPGVMERL LGPE+C NP LVY RMTGWGQ GPLA +AGHDINYIAL+G L A G D P+NL+GDFGGGALYLAFG++ A+ EA+ SG+GQVVDAA+ D AHL TM++GL +W D+R NLLDGGAH Y ++ CAD Sbjct: 28 MGADVVRIDREGGSNPLDLKIDVLNRGRRSVALNLKTPEGIATALALIARADAVIEGYRPGVMERLGLGPEECLAKNPCLVYGRMTGWGQAGPLAHAAGHDINYIALTGVLDAIG-TDESVTPPLNLVGDFGGGALYLAFGVVCALLEARGSGEGQVVDAAMVDGAAHLMTMMYGLTQQGKWTDKRQDNLLDGGAHFYGAFECAD 231
BLAST of carnitine dehydratase vs. nr
Match: gi|1226714884|ref|WP_093967043.1| (CoA transferase [Confluentimicrobium lipolyticum] >gi|1219650352|emb|SMX41709.1| E-cinnamoyl-CoA:R-phenyllactate CoA transferase [Confluentimicrobium lipolyticum]) HSP 1 Score: 264.233 bits (674), Expect = 9.894e-83 Identity = 129/203 (63.55%), Postives = 159/203 (78.33%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRC 203 MGA+++R+ER +LLG++YD+LNRG+ V +DLKSE G TA L+++AD LIEG RPGVMERL LGP+D NP LVY RMTGWGQDGPLA +AGHDINYIALSGAL A G + PV P+NLLGDFGGG +YLA G++ A++EAK+SGKGQVVDAAI+D TAHL +M++ L WQD+RG+NLLDG A Y +YRC Sbjct: 30 MGAEIIRIERPGNKHLLGLEYDILNRGRGFVELDLKSEDGKATARRLIAQADGLIEGMRPGVMERLGLGPDDLQSFNPRLVYGRMTGWGQDGPLAHAAGHDINYIALSGALHAIGPAE-APVPPLNLLGDFGGGGMYLALGLVCAMFEAKTSGKGQVVDAAITDGTAHLMSMIYALRQGGHWQDKRGANLLDGAAPFYGTYRC 231
BLAST of carnitine dehydratase vs. nr
Match: gi|1224610351|ref|WP_092629905.1| (CoA transferase [Actinopolyspora mzabensis] >gi|1086777869|emb|SDK63335.1| alpha-methylacyl-CoA racemase [Actinopolyspora mzabensis]) HSP 1 Score: 263.077 bits (671), Expect = 7.192e-82 Identity = 131/205 (63.90%), Postives = 156/205 (76.10%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205 +GADVVR+ER G + D+LNRGKRSV VDLK E+G ET L L RAD+L+EGFRPGV ERL +GPE C+E NP LVY RMTGWGQDGPLA +AGHDI+YIALSG L GD DG P +PVNLLGDFGGGA+YLA G++AA A++ G GQVVDA+I D +AHL+TMLHG++ W +RGSNLLDGGA Y+ Y +D Sbjct: 38 LGADVVRVERPSGGS---GKEDLLNRGKRSVRVDLKHERGPETVLALAERADILLEGFRPGVAERLGVGPEPCFERNPDLVYGRMTGWGQDGPLAETAGHDIDYIALSGVLHTIGDADGPPRVPVNLLGDFGGGAMYLAVGVLAAQLRARAGGGGQVVDASIVDGSAHLATMLHGMLATGGWNTRRGSNLLDGGAPFYDVYATSD 239
BLAST of carnitine dehydratase vs. nr
Match: gi|653156164|ref|WP_027405177.1| (CoA transferase [Aquaspirillum serpens]) HSP 1 Score: 261.922 bits (668), Expect = 9.301e-82 Identity = 126/207 (60.87%), Postives = 159/207 (76.81%), Query Frame = 0 Query: 1 MGADVVRLER--RQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205 +GADVVR+ER + L D+LNR +R + +DLKS+ G TALE +++AD LIEGFRPGVMERL LGP C E NP LVY RMTGWGQ G L+ +AGHDINY++LSGAL A G+ GKPV+P+NL+ D GGGA++LAFG++AA+ +AK +G+GQVVDAA++D A L TM+H LM +WQ RGSNLLDGGAH Y++YRCAD Sbjct: 29 LGADVVRIERANQHIGALFDPKLDILNRNRRVITLDLKSQDGLNTALEFITQADALIEGFRPGVMERLGLGPAVCLEKNPKLVYGRMTGWGQHGALSHAAGHDINYLSLSGALHAIGEHGGKPVVPLNLVADCGGGAMFLAFGVLAALLDAKRTGQGQVVDAAMTDGCATLMTMMHTLMAMQQWQPMRGSNLLDGGAHFYDTYRCAD 235
BLAST of carnitine dehydratase vs. nr
Match: gi|1270411657|gb|PHS04863.1| (carnitine dehydratase [Acidithiobacillus sp.]) HSP 1 Score: 260.766 bits (665), Expect = 2.046e-81 Identity = 122/205 (59.51%), Postives = 154/205 (75.12%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205 MGADVVR++R+ DY +LNRG+RS+A+DLK ET L L+ +AD L EGFRPGVMERL LGP+ C+ NPA+VY RMTGWGQ GPL+ +AGHDINYIAL+GAL A G+ D PV P+NL+GDFGGGA+YLAFG+M ++E +SSG+GQ+VD A++D AHL M++ L + W D RGSN LDGGAH Y ++ CAD Sbjct: 17 MGADVVRVDRKSPTAGFDKDYQILNRGRRSIALDLKDPDDLETVLRLIEKADALXEGFRPGVMERLGLGPDVCFMRNPAIVYGRMTGWGQAGPLSHAAGHDINYIALTGALHAIGNVDQGPVPPLNLVGDFGGGAMYLAFGLMCGLHEVQSSGQGQIVDVAMTDGAAHLMAMMYSLKHSQMWSDVRGSNFLDGGAHFYGTFECAD 221
BLAST of carnitine dehydratase vs. nr
Match: gi|737738090|ref|WP_035706797.1| (CoA transferase [Haematobacter massiliensis] >gi|672902115|gb|KFI31734.1| CoA-transferase [Haematobacter massiliensis] >gi|1207776208|gb|OWJ72214.1| CoA transferase [Haematobacter massiliensis] >gi|1207792847|gb|OWJ87974.1| CoA transferase [Haematobacter massiliensis]) HSP 1 Score: 260.766 bits (665), Expect = 2.180e-81 Identity = 131/205 (63.90%), Postives = 160/205 (78.05%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205 MGA+V+R+ER ++LLG++YD+LNRG+ + +DLK+ + TA L+SRAD LIEG RPGVMERL LGP D E NP LVY RMTGWGQ GPLAS+AGHDINYI+LSGAL A G ++ P +P+NL+GDFGGGALYLAFG+ AA+ EA SGKGQVVDAAI+D T HL +M++G+ WQD+RG NLLDGGA Y YRCAD Sbjct: 29 MGAEVIRIERPGSESLLGLEYDILNRGRGFIRLDLKTAEDRATARALVSRADALIEGMRPGVMERLGLGPGDFPE-NPRLVYGRMTGWGQTGPLASAAGHDINYISLSGALHAIGPEE-APAVPLNLIGDFGGGALYLAFGMAAALLEAARSGKGQVVDAAITDGTVHLMSMIYGMRAGGCWQDRRGVNLLDGGAPEYGCYRCAD 231 The following BLAST results are available for this feature:
BLAST of carnitine dehydratase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of carnitine dehydratase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of carnitine dehydratase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1_size3401120:176202..177504- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold1_size3401120-processed-gene-1.35 ID=snap_masked-scaffold1_size3401120-processed-gene-1.35|Name=carnitine dehydratase|organism=Tigriopus kingsejongensis|type=gene|length=1303bp|location=Sequence derived from alignment at scaffold1_size3401120:176202..177504- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'carnitine dehydratase' has the following synonyms
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