PREDICTED: uncharacterized protein LOC100571019 partial, snap_masked-scaffold246_size239296-processed-gene-0.1 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of PREDICTED: uncharacterized protein LOC100571019 partial vs. L. salmonis genes
Match: EMLSAG00000006886 (supercontig:LSalAtl2s:LSalAtl2s389:81769:89252:1 gene:EMLSAG00000006886 transcript:EMLSAT00000006886 description:"maker-LSalAtl2s389-augustus-gene-0.16") HSP 1 Score: 188.734 bits (478), Expect = 5.541e-52 Identity = 103/183 (56.28%), Postives = 125/183 (68.31%), Query Frame = 0
Query: 486 VKVKLPMPIINGRRPVVELVMEQNGKYIPIKFSNNMQVTEAIPKSLFEKANAMRKTFYQNASQVPKVGNKPIFLAINPSSTGVNQLLGAPPQRAHNQISTRPRPQIQPPASASSHRKVAPAGLPNSDQVSILVRPQKGFPTKPVLLNVPRSVALKVKPGTTLSFSASNDQKYVVIDSKIHPPV 668
V VKLPM NGRRP+VELVM QNGKY PIKFSNNMQV+E I K++FE+A +++T YQ A +VP+V +PIFLAINP++ L A A + P + +++ H+ SDQVSILVR Q KPVLLNVPR +A+KVK GTTLSFSAS+DQKY VIDSKIHPPV
Sbjct: 188 VNVKLPMTNPNGRRPIVELVMHQNGKYQPIKFSNNMQVSEMISKTIFERATTLQRTLYQKARKVPRVNGRPIFLAINPTTQNNRGQLNALFSSAQLSRQSNSVPSLVSSSTSEVHK---------SDQVSILVRSQSS--PKPVLLNVPRKIAIKVKAGTTLSFSASSDQKYTVIDSKIHPPV 359 HSP 2 Score: 87.0409 bits (214), Expect = 4.933e-18 Identity = 46/88 (52.27%), Postives = 55/88 (62.50%), Query Frame = 0
Query: 785 PSASSSVLSSGEIGKSPLEPCTPYCPGVQGFPELECRSCQSLFHAKCVGINPLALNKVKGNFRCRMCLPTRTSNSATAANNPQIINLD 872
P+A V S EI PCTPYCPGV GFPE+EC+ CQSLFHA+CVG L ++ NF C+MC T TS + PQ+INLD
Sbjct: 414 PAAGHKVSSELEIN-----PCTPYCPGVTGFPEVECKGCQSLFHAQCVG---LLNSRSMSNFYCKMCSRTPTS---IPRSTPQVINLD 490 HSP 3 Score: 73.559 bits (179), Expect = 1.034e-13 Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 0
Query: 370 LGVYTELGGRSSPVTPPPLRAVRLTQAATATKILKAYGQIKAEAAQVRVQREPELKEDLVSHDLAIKRFRNFVQHANRNNFSRLN 454
+G++T LGG S P TPPPLRAV+LT T KI A ++K +A ++ ++RE +K++L SHD AI++ +N + F+ +N
Sbjct: 1 MGIFTSLGGESHPPTPPPLRAVKLTPRETTEKIKDALKKVKLQADKLSLEREQHMKDNLASHDSAIRKCKNIPVERKYSGFNYMN 85 HSP 4 Score: 57.7658 bits (138), Expect = 7.467e-9 Identity = 32/77 (41.56%), Postives = 41/77 (53.25%), Query Frame = 0
Query: 792 LSSGEIGKSPLE-------PCTPYCPGVQGF-PELECRSCQSLFHAKCVGINPLALNKVKGNFRCRMC--LPTRTSN 858
L I +SPL+ PCT +CPG G P L C SCQ LFHA+C G+ N++ F+C+ C L R SN
Sbjct: 86 LQQNRIKRSPLDHGSKKNLPCTLHCPGSYGLLPNLTCVSCQCLFHARCQGMT--QANRLFKTFKCKACSLLSNRNSN 160
BLAST of PREDICTED: uncharacterized protein LOC100571019 partial vs. nr
Match: gi|1325317263|ref|XP_023340374.1| (uncharacterized protein LOC111710503 [Eurytemora affinis]) HSP 1 Score: 447.973 bits (1151), Expect = 5.245e-140 Identity = 308/750 (41.07%), Postives = 414/750 (55.20%), Query Frame = 0
Query: 127 EGDDEGEGDEAGSSEEDEIPP------GDPNKPPGEGAERSVDPAHLLPFKLGWVREVVVRIGKNNSATQYDVYYLPPPDTKYR---TREAKRKRRSKADQEKYFADFPSREISVANFYYVRKPLGLNNTAYEIVRKANSGDPPSQSEGTAKPG-NAKATTAKKSGKKAKPSYKELEESAGLVESDDEFGFEEEKIEFKEGLDLAMPISLQIRNHCMAMRAENKKRRRVRDPETCCTPPMAEDMLWSGLDNDPLGVYTELGGRSSPVTPPPLRAVRLTQAATATKILKAYGQIKAEAAQ--VRV---QREPELKEDLVSHDLAIKRFRNF---VQHANRNNFSR------LNSVTAGDFQSNQAAAKRQNWTYMKPRSNADFKVKVKLPMPIINGRRPVVELVMEQNGKYIPIKFSNNMQVTEAIPKSLFEKANAMRKTFYQNASQVPKVGNKPIFLAINPSSTGVNQLLGAPPQRAHNQISTRPRPQIQPPASASSHRKVAPAGLP-NSDQVSILVRPQKGFPTKPVLLNVPRSVALKVKPGTTLSFSASNDQKYVVIDSKIHPPVGVLSAANGSGRSVGSKPSGGHMPNKSLPITRLNGPGATFPQNSFRRNANAGVPNGIPNLPKSVSIRPISNKPSPATSFPRRINMPTSGPVVRAGMRRPAGAPPSSVHAPVAKKPMRPSASSSVLSSGEIGKSPLEPCTPYCPGVQGFPELECRSCQSLFHAKCVGINPLALNKVKGNFRCRMC 851
E D++ EG++ +E++E P GD ++ PG GA R +D LLPF+LGW RE VR K Q D++Y PP D + REA+RKRRSK DQE+YF +FP ++SV NF YVR+PL LNN AYEIVR +KP ++ ++GK A SYKE+ E GL+ S+ EE + E D +P+SLQ+ + +R E+KKR + + + C TP +AE++ W+ LD+DPLG+Y ELGGRSSP TPPPLRA+RLT T I + +I+ +R+ ++ +K++L SHD AIK++++F V +R+ R + V A F+ +AA+ N +N+ VKV+LPM NG+RPVVELVM NGKY PIKF+NN QVTE+IPK LF++AN+MRKT YQ + QVPK+G K +F+AINPS G+ P +++ S R +P + + P +SDQVSILVRP +G VLLNVPR VALKVK GTTLSFSASN+QKY VID+K+HPPV G G P R+ A + IP+LP VSIRPI+ T ++ N P G AG A + A V RP ++ S + S PC+P+CPGV G PELEC SC SLFH CVGI ++ + FRC+ C
Sbjct: 220 EDDEQSEGEKVSDTEKEEEPTVEDTSKGDRSRQPGVGASRKIDQDFLLPFRLGWTREASVRQVKAGPP-QIDIFYWPPKDGEDHGARNREARRKRRSKVDQERYFEEFPHPQLSVNNFTYVRRPLELNNEAYEIVR-------------YSKPSLETRSDKRTRAGKIA--SYKEVAEHEGLLSSNSSEDEAEEVQDITE-FDQGLPLSLQVLSRVTPLREESKKRHKYPNRDRCVTPHLAEEISWTLLDDDPLGIYHELGGRSSPSTPPPLRALRLTSHPTIAAINQKLDEIRTGLVDPMLRITEGNKDLNMKDNLASHDAAIKKYKDFAPVVPFQHRSLHGRPVQRGIVGRVGAAGFRPPPSAARSSN-------TNSVGFVKVRLPMLSTNGKRPVVELVMLNNGKYQPIKFTNNRQVTESIPKRLFDQANSMRKTLYQRSVQVPKIGAKQVFIAINPSP-------GSRPFQSNTNGSPANRQPQKPQQQKPQQPQQQTSKPPSSSDQVSILVRPAQG--GNAVLLNVPRHVALKVKIGTTLSFSASNEQKYTVIDNKMHPPV---------------------------------GKGRPPPPRQERKPA----IHTIPSLPSGVSIRPINR-----TQNHQQQNRPQVGRTTPAGR---AQQFVRQIQAQVRHSSPRPIQTAGRKSGPSV--SNFSPCSPFCPGVTGIPELECSSCHSLFHPVCVGIPHNRIHLLASLFRCKAC 889
BLAST of PREDICTED: uncharacterized protein LOC100571019 partial vs. nr
Match: gi|1325295371|ref|XP_023330674.1| (uncharacterized protein LOC111703053 [Eurytemora affinis]) HSP 1 Score: 65.0846 bits (157), Expect = 7.476e-7 Identity = 44/137 (32.12%), Postives = 62/137 (45.26%), Query Frame = 0
Query: 724 IPNLPKSVSIRPISNKPSPATSFPRRINMP------TSGPVVRAGMRRPAGAPPSSVHAPVAKKPMRPSASSSVLSSGEIGKSPLEPCTPYCPGVQGFPELECRSCQSLFHAKCVGINP-LALNKVKGNFRCRMCLP 853
+ LPK + P+ N+P P + P MP + P+ + + A PS V P RP+ + K + PC+ +CPGV FP L C SC LFH KCVG+ P N+ + +F C C P
Sbjct: 740 LTKLPKVMPTAPVRNQPRPYSHVPI---MPAPTPTLSITPISMSNLYPNLQAVPSDPSFNVT--PTRPTVPKVFRPT----KKTMLPCSIHCPGVSEFPSLSCTSCHCLFHPKCVGLPPTFCNNQAQFDFFCNDCQP 867 The following BLAST results are available for this feature:
BLAST of PREDICTED: uncharacterized protein LOC100571019 partial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of PREDICTED: uncharacterized protein LOC100571019 partial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of PREDICTED: uncharacterized protein LOC100571019 partial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 2
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold246_size239296:8243..12346+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold246_size239296-processed-gene-0.1 ID=snap_masked-scaffold246_size239296-processed-gene-0.1|Name=PREDICTED: uncharacterized protein LOC100571019 partial|organism=Tigriopus kingsejongensis|type=gene|length=4104bp|location=Sequence derived from alignment at scaffold246_size239296:8243..12346+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'PREDICTED: uncharacterized protein LOC100571019 partial' has the following synonyms
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