Synaptobrevin-1, snap_masked-scaffold262_size232883-processed-gene-0.10 (gene) Tigriopus kingsejongensis

Overview


Name	Synaptobrevin-1
Unique Name	snap_masked-scaffold262_size232883-processed-gene-0.10
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

[Close]

BLAST of Synaptobrevin-1 vs. L. salmonis genes
Match: EMLSAG00000010393 (supercontig:LSalAtl2s:LSalAtl2s68:1408979:1409257:-1 gene:EMLSAG00000010393 transcript:EMLSAT00000010393 description:"augustus_masked-LSalAtl2s68-processed-gene-14.0")

HSP 1 Score: 124.02 bits (310), Expect = 4.957e-39
Identity = 72/91 (79.12%), Postives = 79/91 (86.81%), Query Frame = 0

Query:    5 SGDSNRLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIGVVISVIVLAILIWLFS 95
            S     LEE RRQVDEVQNIMK NV+K+LERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFW+NMKMKIII VVI V+++ I+  LFS
Sbjct:    2 SKSDAHLEEXRRQVDEVQNIMKGNVEKMLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWQNMKMKIIICVVIFVVLVIIIALLFS 92

[Close]

BLAST of Synaptobrevin-1 vs. L. salmonis genes
Match: EMLSAG00000000407 (supercontig:LSalAtl2s:LSalAtl2s1064:131354:159067:1 gene:EMLSAG00000000407 transcript:EMLSAT00000000407 description:"snap_masked-LSalAtl2s1064-processed-gene-1.2")

HSP 1 Score: 90.1225 bits (222), Expect = 1.211e-23
Identity = 48/84 (57.14%), Postives = 63/84 (75.00%), Query Frame = 0

Query:    8 SNRLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIGVV----ISVIVL 87
            S RL++ + QV EV +IM+ NV+KVLERD KL +L+ RAD LQEG  QF + AV++KRK +WEN KM II+GV+    I+VIVL
Sbjct:   92 SKRLQQAQAQVGEVVDIMRINVEKVLERDSKLSELDRRADDLQEGASQFQQQAVKLKRKLWWENAKMWIILGVLLLFFIAVIVL 175

[Close]

BLAST of Synaptobrevin-1 vs. L. salmonis genes
Match: EMLSAG00000009514 (supercontig:LSalAtl2s:LSalAtl2s612:212145:215065:1 gene:EMLSAG00000009514 transcript:EMLSAT00000009514 description:"augustus_masked-LSalAtl2s612-processed-gene-2.1")

HSP 1 Score: 86.2705 bits (212), Expect = 3.636e-23
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 0

Query:   10 RLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIGVVISVIVLAILIWLF 94
            ++ + + QVDEV NIM  NV++VLERD KLG LEERAD LQ+G  QF + A  +K K + EN+K  I +GVV  VI+L +L W F
Sbjct:   37 KMGQQQAQVDEVINIMHTNVEQVLERDSKLGALEERADALQDGCAQFEKQAAAMKNKFWLENLKSMIAMGVV-GVILLGLLYWKF 120

[Close]

BLAST of Synaptobrevin-1 vs. L. salmonis genes
Match: EMLSAG00000007095 (supercontig:LSalAtl2s:LSalAtl2s3:880430:881669:1 gene:EMLSAG00000007095 transcript:EMLSAT00000007095 description:"maker-LSalAtl2s3-augustus-gene-8.30")

HSP 1 Score: 78.1814 bits (191), Expect = 1.629e-20
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 0

Query:    8 SNRLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIG 79
            S   E  + QVDEV  IM+ NV+KV++RD KLG L++RA  L+  +  F  S+VR++RK +WEN+KMK+IIG
Sbjct:   12 SPHFENVQNQVDEVVTIMRENVNKVIQRDEKLGDLDDRAANLEANSNSFAASSVRLRRKYWWENLKMKLIIG 83

[Close]

BLAST of Synaptobrevin-1 vs. L. salmonis genes
Match: EMLSAG00000009513 (supercontig:LSalAtl2s:LSalAtl2s612:211386:211874:1 gene:EMLSAG00000009513 transcript:EMLSAT00000009513 description:"augustus_masked-LSalAtl2s612-processed-gene-2.0")

HSP 1 Score: 64.3142 bits (155), Expect = 1.057e-14
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 0

Query:   18 VDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFW-ENMKMKI 76
            VDEV  IM+ NV+KVL+RD KL +L+ERAD LQ+G  QF + A ++K K FW +NMK  I
Sbjct:   46 VDEVVGIMRNNVEKVLDRDAKLSELDERADALQDGASQFEKQAGKLKNK-FWLQNMKFLI 104

[Close]

BLAST of Synaptobrevin-1 vs. L. salmonis genes
Match: EMLSAG00000003848 (supercontig:LSalAtl2s:LSalAtl2s208:461846:479707:1 gene:EMLSAG00000003848 transcript:EMLSAT00000003848 description:"maker-LSalAtl2s208-augustus-gene-5.10")

HSP 1 Score: 44.669 bits (104), Expect = 4.017e-7
Identity = 21/71 (29.58%), Postives = 43/71 (60.56%), Query Frame = 0

Query:   10 RLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIGV 80
            +L+  R +VD+V+N+  +N++ ++ER  KL  L ++ + L   + QF +++V + R+   +NMK  I+   
Sbjct:  128 KLDTVREEVDQVRNLAVSNIESIIERGEKLELLIDKTENLSSTSVQFKQTSVALSRRMRCQNMKWTILASC 198

[Close]

BLAST of Synaptobrevin-1 vs. SwissProt
Match: gi|6094391|sp|P47193.3|VAMP2_XENLA (RecName: Full=Vesicle-associated membrane protein 2; Short=VAMP-2; AltName: Full=SYBII; AltName: Full=Synaptobrevin-2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.741e-25
Identity = 44/71 (61.97%), Postives = 57/71 (80.28%), Query Frame = 0

Query:   10 RLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIGV 80
            RL++T+ QVDEV +IM+ NVDKVLERD KL +L++RAD LQ G  QF  SA ++KRK +W+NMKM II+GV
Sbjct:   29 RLQQTQAQVDEVVDIMRVNVDKVLERDTKLSELDDRADALQAGASQFETSAAKLKRKYWWKNMKMMIIMGV 99

[Close]

BLAST of Synaptobrevin-1 vs. SwissProt
Match: gi|51704191|sp|P63026.2|VAMP2_BOVIN (RecName: Full=Vesicle-associated membrane protein 2; Short=VAMP-2; AltName: Full=Synaptobrevin-2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.707e-24
Identity = 43/71 (60.56%), Postives = 57/71 (80.28%), Query Frame = 0

Query:   10 RLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIGV 80
            RL++T+ QVDEV +IM+ NVDKVLERD KL +L++RAD LQ G  QF  SA ++KRK +W+N+KM II+GV
Sbjct:   31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGV 101

[Close]

BLAST of Synaptobrevin-1 vs. SwissProt
Match: gi|51704188|sp|P63045.2|VAMP2_RAT (RecName: Full=Vesicle-associated membrane protein 2; Short=VAMP-2; AltName: Full=Synaptobrevin-2 >gi|51704193|sp|P63044.2|VAMP2_MOUSE RecName: Full=Vesicle-associated membrane protein 2; Short=VAMP-2; AltName: Full=Synaptobrevin-2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.822e-24
Identity = 43/71 (60.56%), Postives = 57/71 (80.28%), Query Frame = 0

Query:   10 RLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIGV 80
            RL++T+ QVDEV +IM+ NVDKVLERD KL +L++RAD LQ G  QF  SA ++KRK +W+N+KM II+GV
Sbjct:   31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGV 101

[Close]

BLAST of Synaptobrevin-1 vs. SwissProt
Match: gi|83288286|sp|Q9N0Y0.3|VAMP2_MACMU (RecName: Full=Vesicle-associated membrane protein 2; Short=VAMP-2; AltName: Full=Synaptobrevin-2 >gi|288558837|sp|P63027.3|VAMP2_HUMAN RecName: Full=Vesicle-associated membrane protein 2; Short=VAMP-2; AltName: Full=Synaptobrevin-2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.822e-24
Identity = 43/71 (60.56%), Postives = 57/71 (80.28%), Query Frame = 0

Query:   10 RLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIGV 80
            RL++T+ QVDEV +IM+ NVDKVLERD KL +L++RAD LQ G  QF  SA ++KRK +W+N+KM II+GV
Sbjct:   31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGV 101

[Close]

BLAST of Synaptobrevin-1 vs. SwissProt
Match: gi|81175197|sp|P18489.3|SYB_DROME (RecName: Full=Synaptobrevin)

HSP 1 Score: 92.4337 bits (228), Expect = 2.532e-24
Identity = 43/82 (52.44%), Postives = 65/82 (79.27%), Query Frame = 0

Query:   10 RLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIGVVISVIVLAILI 91
            +L++T+ +VDEV  IM+ NV+KVLERD KL +L ERAD+L++G  QF + A ++KRKQ+W NMKM II+GV+  V+++ +L+
Sbjct:   47 KLQQTQAKVDEVVGIMRVNVEKVLERDQKLSELGERADQLEQGASQFEQQAGKLKRKQWWANMKMMIILGVIAVVLLIIVLV 128

[Close]

BLAST of Synaptobrevin-1 vs. SwissProt
Match: gi|160332380|sp|Q0V7N0.2|VAMP1_BOVIN (RecName: Full=Vesicle-associated membrane protein 1; Short=VAMP-1; AltName: Full=Synaptobrevin-1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.177e-24
Identity = 45/86 (52.33%), Postives = 67/86 (77.91%), Query Frame = 0

Query:   10 RLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIGVVISVIVLAILIWLFS 95
            RL++T+ QV+EV +IM+ NVDKVLERD KL +L++RAD LQ G  QF  SA ++KRK +W+N KM I++G + ++IV+ I+I+ F+
Sbjct:   33 RLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFA 118

[Close]

BLAST of Synaptobrevin-1 vs. SwissProt
Match: gi|2842651|sp|Q62442.1|VAMP1_MOUSE (RecName: Full=Vesicle-associated membrane protein 1; Short=VAMP-1; AltName: Full=Synaptobrevin-1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.363e-24
Identity = 45/86 (52.33%), Postives = 67/86 (77.91%), Query Frame = 0

Query:   10 RLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIGVVISVIVLAILIWLFS 95
            RL++T+ QV+EV +IM+ NVDKVLERD KL +L++RAD LQ G  QF  SA ++KRK +W+N KM I++G + ++IV+ I+I+ F+
Sbjct:   33 RLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT 118

[Close]

BLAST of Synaptobrevin-1 vs. SwissProt
Match: gi|135093|sp|P23763.1|VAMP1_HUMAN (RecName: Full=Vesicle-associated membrane protein 1; Short=VAMP-1; AltName: Full=Synaptobrevin-1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.555e-23
Identity = 44/86 (51.16%), Postives = 67/86 (77.91%), Query Frame = 0

Query:   10 RLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIGVVISVIVLAILIWLFS 95
            RL++T+ QV+EV +I++ NVDKVLERD KL +L++RAD LQ G  QF  SA ++KRK +W+N KM I++G + ++IV+ I+I+ F+
Sbjct:   33 RLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT 118

[Close]

BLAST of Synaptobrevin-1 vs. SwissProt
Match: gi|74846112|sp|Q60WU2.1|SYB1_CAEBR (RecName: Full=Synaptobrevin-1; AltName: Full=Synaptobrevin-related protein 1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.088e-23
Identity = 43/71 (60.56%), Postives = 56/71 (78.87%), Query Frame = 0

Query:    8 SNRLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIII 78
            + RL++T+ QVDEV  IMK NV+KVLERD KL QL++RAD LQEG  QF +SA  +KRK +W+N+KM II+
Sbjct:   20 NKRLQQTQAQVDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQFEKSAATLKRKYWWKNIKMMIIM 90

[Close]

BLAST of Synaptobrevin-1 vs. SwissProt
Match: gi|74956515|sp|O02495.1|SYB1_CAEEL (RecName: Full=Synaptobrevin-1; AltName: Full=Synaptobrevin-related protein 1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.789e-23
Identity = 43/71 (60.56%), Postives = 56/71 (78.87%), Query Frame = 0

Query:    8 SNRLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIII 78
            + RL++T+ QVDEV  IMK NV+KVLERD KL QL++RAD LQEG  QF +SA  +KRK +W+N+KM II+
Sbjct:   21 NKRLQQTQAQVDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQFEKSAATLKRKYWWKNIKMMIIM 91

[Close]

BLAST of Synaptobrevin-1 vs. nr
Match: gi|290562657|gb|ADD38724.1| (Synaptobrevin-1 [Lepeophtheirus salmonis])

HSP 1 Score: 125.176 bits (313), Expect = 2.040e-35
Identity = 72/91 (79.12%), Postives = 80/91 (87.91%), Query Frame = 0

Query:    5 SGDSNRLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIGVVISVIVLAILIWLFS 95
            S     LEETRRQVDEVQNIMK NV+K+LERDGKLGQLE+RADRLQEGTEQFHRSAVRIKRKQFW+NMKMKIII VVI V+++ I+  LFS
Sbjct:    2 SKSDAHLEETRRQVDEVQNIMKGNVEKMLERDGKLGQLEKRADRLQEGTEQFHRSAVRIKRKQFWQNMKMKIIICVVIFVVLVIIIALLFS 92

[Close]

BLAST of Synaptobrevin-1 vs. nr
Match: gi|944350851|ref|XP_014378539.1| (PREDICTED: vesicle-associated membrane protein 1 isoform X1 [Alligator sinensis])

HSP 1 Score: 107.071 bits (266), Expect = 2.986e-28
Identity = 48/86 (55.81%), Postives = 69/86 (80.23%), Query Frame = 0

Query:   10 RLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIGVVISVIVLAILIWLFS 95
            RL++T+ QV+EV +IM+ NVDKVLERD KL +L++RAD LQ G  QF  SA ++KRK FW+NMKM II+GV+ +++V+AI ++ F+
Sbjct:    6 RLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAGKLKRKYFWKNMKMMIILGVICAIVVVAIALYFFT 91

[Close]

BLAST of Synaptobrevin-1 vs. nr
Match: gi|1121896946|ref|XP_019404506.1| (PREDICTED: vesicle-associated membrane protein 1-like isoform X1 [Crocodylus porosus])

HSP 1 Score: 107.457 bits (267), Expect = 3.394e-28
Identity = 48/86 (55.81%), Postives = 69/86 (80.23%), Query Frame = 0

Query:   10 RLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIGVVISVIVLAILIWLFS 95
            RL++T+ QV+EV +IM+ NVDKVLERD KL +L++RAD LQ G  QF  SA ++KRK FW+NMKM II+GV+ +++V+AI ++ F+
Sbjct:   31 RLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAGKLKRKYFWKNMKMMIILGVICAIVVVAIALYFFT 116

[Close]

BLAST of Synaptobrevin-1 vs. nr
Match: gi|530577214|ref|XP_005282563.1| (vesicle-associated membrane protein 2-like [Chrysemys picta bellii])

HSP 1 Score: 103.219 bits (256), Expect = 1.621e-26
Identity = 48/86 (55.81%), Postives = 66/86 (76.74%), Query Frame = 0

Query:   10 RLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIGVVISVIVLAILIWLFS 95
            RL++T+ QVDEV +IM+ NVDKVLERD KL +L+ RAD LQ G  QF  SA ++KRK +W+N KM II+GVV +VI++ I+I+  +
Sbjct:   32 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDNRADALQAGASQFETSAAKLKRKYWWKNCKMMIILGVVCAVILIVIIIYFCT 117

[Close]

BLAST of Synaptobrevin-1 vs. nr
Match: gi|1117412357|ref|XP_019382231.1| (PREDICTED: vesicle-associated membrane protein 1-like [Gavialis gangeticus])

HSP 1 Score: 105.916 bits (263), Expect = 1.723e-26
Identity = 48/91 (52.75%), Postives = 71/91 (78.02%), Query Frame = 0

Query:    5 SGDSNRLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIGVVISVIVLAILIWLFS 95
            +  + RL++T+ QV+EV +IM+ NVDKVLERD KL +L++RAD LQ G  QF  SA ++KRK FW+NMKM II+GV+ +++V+AI ++ F+
Sbjct:  114 TSSNRRLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAGKLKRKYFWKNMKMMIILGVICAIVVVAIALYFFT 204

[Close]

BLAST of Synaptobrevin-1 vs. nr
Match: gi|677986847|ref|XP_009074514.1| (PREDICTED: vesicle-associated membrane protein 2, partial [Acanthisitta chloris])

HSP 1 Score: 102.064 bits (253), Expect = 4.472e-26
Identity = 49/89 (55.06%), Postives = 66/89 (74.16%), Query Frame = 0

Query:    2 ATQSGDSNRLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIGVVISVIVLAIL 90
            AT    + RL++T+ QVDEV +IM+ NVDKVLERD KL +L+ RAD LQ G  QF  SA ++KRK +W+N KM II+GVV +VI++ I+
Sbjct:   20 ATSVASNKRLQQTQAQVDEVVDIMRMNVDKVLERDQKLSELDNRADALQAGASQFETSAAKLKRKYWWKNCKMMIILGVVCAVILIIII 108

[Close]

BLAST of Synaptobrevin-1 vs. nr
Match: gi|62825909|gb|AAH94126.1| (Vamp2-a protein [Xenopus laevis])

HSP 1 Score: 102.064 bits (253), Expect = 4.744e-26
Identity = 46/84 (54.76%), Postives = 67/84 (79.76%), Query Frame = 0

Query:   10 RLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIGVVISVIVLAILIWL 93
            RL++T+ QVDEV +IM+ NVDKVLERD KL +L++RAD LQ G  QF  SA ++KRK +W+NMKM II+GV+ ++I++ I+++ 
Sbjct:   29 RLQQTQAQVDEVVDIMRVNVDKVLERDTKLSELDDRADALQAGASQFETSAAKLKRKYWWKNMKMMIIMGVMCAIILIIIVVYF 112

[Close]

BLAST of Synaptobrevin-1 vs. nr
Match: gi|675629580|ref|XP_008943286.1| (PREDICTED: vesicle-associated membrane protein 2, partial [Merops nubicus])

HSP 1 Score: 101.679 bits (252), Expect = 5.815e-26
Identity = 49/89 (55.06%), Postives = 66/89 (74.16%), Query Frame = 0

Query:    2 ATQSGDSNRLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIGVVISVIVLAIL 90
            AT    + RL++T+ QVDEV +IM+ NVDKVLERD KL +L+ RAD LQ G  QF  SA ++KRK +W+N KM II+GVV +VI++ I+
Sbjct:   20 ATNVSSNKRLQQTQAQVDEVVDIMRMNVDKVLERDQKLSELDNRADALQAGASQFETSAAKLKRKYWWKNCKMMIILGVVCAVILIIII 108

[Close]

BLAST of Synaptobrevin-1 vs. nr
Match: gi|1246210297|ref|XP_022451514.1| (vesicle-associated membrane protein 2 [Delphinapterus leucas])

HSP 1 Score: 101.679 bits (252), Expect = 6.046e-26
Identity = 51/87 (58.62%), Postives = 66/87 (75.86%), Query Frame = 0

Query:   10 RLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIGVVISVIVLAILIWLFSG 96
            RL++T+ QVDEV +IM+ NVDKVLERD KL +L++RAD LQ G  QF  SA ++KRK +W+N+KM II+G VI  I+L ILI  FS 
Sbjct:   31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILG-VICAIILVILIVYFSS 116

[Close]

BLAST of Synaptobrevin-1 vs. nr
Match: gi|944350853|ref|XP_014378540.1| (PREDICTED: vesicle-associated membrane protein 1 isoform X2 [Alligator sinensis])

HSP 1 Score: 100.908 bits (250), Expect = 6.166e-26
Identity = 47/80 (58.75%), Postives = 65/80 (81.25%), Query Frame = 0

Query:   10 RLEETRRQVDEVQNIMKANVDKVLERDGKLGQLEERADRLQEGTEQFHRSAVRIKRKQFWENMKMKIIIGVVISVIVLAI 89
            RL++T+ QV+EV +IM+ NVDKVLERD KL +L++RAD LQ G  QF  SA ++KRK FW+NMKM II+GV+ +++V+AI
Sbjct:    6 RLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAGKLKRKYFWKNMKMMIILGVICAIVVVAI 85

The following BLAST results are available for this feature:

BLAST of Synaptobrevin-1 vs. L. salmonis genes
BLAST of Synaptobrevin-1 vs. SwissProt
BLAST of Synaptobrevin-1 vs. nr

BLAST of Synaptobrevin-1 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 6


Match Name	E-value	Identity	Description
EMLSAG00000010393	4.957e-39	79.12	supercontig:LSalAtl2s:LSalAtl2s68:1408979:1409257:...	[more]
EMLSAG00000000407	1.211e-23	57.14	supercontig:LSalAtl2s:LSalAtl2s1064:131354:159067:...	[more]
EMLSAG00000009514	3.636e-23	52.94	supercontig:LSalAtl2s:LSalAtl2s612:212145:215065:1...	[more]
EMLSAG00000007095	1.629e-20	51.39	supercontig:LSalAtl2s:LSalAtl2s3:880430:881669:1 g...	[more]
EMLSAG00000009513	1.057e-14	56.67	supercontig:LSalAtl2s:LSalAtl2s612:211386:211874:1...	[more]
EMLSAG00000003848	4.017e-7	29.58	supercontig:LSalAtl2s:LSalAtl2s208:461846:479707:1...	[more]

BLAST of Synaptobrevin-1 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|6094391\|sp\|P47193.3\|VAMP2_XENLA	3.741e-25	61.97	RecName: Full=Vesicle-associated membrane protein ...	[more]
gi\|51704191\|sp\|P63026.2\|VAMP2_BOVIN	1.707e-24	60.56	RecName: Full=Vesicle-associated membrane protein ...	[more]
gi\|51704188\|sp\|P63045.2\|VAMP2_RAT	1.822e-24	60.56	RecName: Full=Vesicle-associated membrane protein ...	[more]
gi\|83288286\|sp\|Q9N0Y0.3\|VAMP2_MACMU	1.822e-24	60.56	RecName: Full=Vesicle-associated membrane protein ...	[more]
gi\|81175197\|sp\|P18489.3\|SYB_DROME	2.532e-24	52.44	RecName: Full=Synaptobrevin	[more]
gi\|160332380\|sp\|Q0V7N0.2\|VAMP1_BOVIN	4.177e-24	52.33	RecName: Full=Vesicle-associated membrane protein ...	[more]
gi\|2842651\|sp\|Q62442.1\|VAMP1_MOUSE	4.363e-24	52.33	RecName: Full=Vesicle-associated membrane protein ...	[more]
gi\|135093\|sp\|P23763.1\|VAMP1_HUMAN	2.555e-23	51.16	RecName: Full=Vesicle-associated membrane protein ...	[more]
gi\|74846112\|sp\|Q60WU2.1\|SYB1_CAEBR	4.088e-23	60.56	RecName: Full=Synaptobrevin-1; AltName: Full=Synap...	[more]
gi\|74956515\|sp\|O02495.1\|SYB1_CAEEL	4.789e-23	60.56	RecName: Full=Synaptobrevin-1; AltName: Full=Synap...	[more]

Pages

BLAST of Synaptobrevin-1 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|290562657\|gb\|ADD38724.1\|	2.040e-35	79.12	Synaptobrevin-1 [Lepeophtheirus salmonis]	[more]
gi\|944350851\|ref\|XP_014378539.1\|	2.986e-28	55.81	PREDICTED: vesicle-associated membrane protein 1 i...	[more]
gi\|1121896946\|ref\|XP_019404506.1\|	3.394e-28	55.81	PREDICTED: vesicle-associated membrane protein 1-l...	[more]
gi\|530577214\|ref\|XP_005282563.1\|	1.621e-26	55.81	vesicle-associated membrane protein 2-like [Chryse...	[more]
gi\|1117412357\|ref\|XP_019382231.1\|	1.723e-26	52.75	PREDICTED: vesicle-associated membrane protein 1-l...	[more]
gi\|677986847\|ref\|XP_009074514.1\|	4.472e-26	55.06	PREDICTED: vesicle-associated membrane protein 2, ...	[more]
gi\|62825909\|gb\|AAH94126.1\|	4.744e-26	54.76	Vamp2-a protein [Xenopus laevis]	[more]
gi\|675629580\|ref\|XP_008943286.1\|	5.815e-26	55.06	PREDICTED: vesicle-associated membrane protein 2, ...	[more]
gi\|1246210297\|ref\|XP_022451514.1\|	6.046e-26	58.62	vesicle-associated membrane protein 2 [Delphinapte...	[more]
gi\|944350853\|ref\|XP_014378540.1\|	6.166e-26	58.75	PREDICTED: vesicle-associated membrane protein 1 i...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold262_size232883	supercontig	scaffold262_size232883:51924..52214 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	C:integral to membrane

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold262_size232883-processed-gene-0.10-mRNA-1	snap_masked-scaffold262_size232883-processed-gene-0.10-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold262_size232883:51924..52214-

gene from alignment at scaffold262_size232883:51924..52214-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold262_size232883-processed-gene-0.10 ID=snap_masked-scaffold262_size232883-processed-gene-0.10|Name=Synaptobrevin-1|organism=Tigriopus kingsejongensis|type=gene|length=291bp|location=Sequence derived from alignment at scaffold262_size232883:51924..52214- (Tigriopus kingsejongensis)
ATGGCCACCCAATCCGGAGATTCGAATCGCTTGGAGGAAACCCGCCGCCA
GGTGGACGAGGTCCAGAACATCATGAAGGCCAACGTGGACAAGGTCCTGG
AACGGGACGGGAAGCTGGGTCAACTCGAAGAACGAGCCGATCGCCTCCAA
GAGGGCACGGAGCAGTTCCACCGCTCCGCCGTGCGGATCAAGCGCAAGCA
GTTTTGGGAGAACATGAAGATGAAGATCATCATCGGCGTGGTGATCAGTG
TGATCGTGCTGGCCATTCTCATCTGGCTGTTCTCCGGCTAA

Synonyms

The feature 'Synaptobrevin-1' has the following synonyms


Synonym
Tk12536

Add to Basket

Pages

Pages

Search form