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Associated RNAi Experiments
Homology
BLAST of interferon-induced gtp-binding protein mx vs. L. salmonis genes
Match: EMLSAG00000000585 (supercontig:LSalAtl2s:LSalAtl2s109:162674:171177:1 gene:EMLSAG00000000585 transcript:EMLSAT00000000585 description:"maker-LSalAtl2s109-augustus-gene-1.22") HSP 1 Score: 92.4337 bits (228), Expect = 7.316e-23 Identity = 59/161 (36.65%), Postives = 88/161 (54.66%), Query Frame = 0
Query: 122 NGLKCFVGSGNASAILPA--TAEEFEMHEKSNDKHEFKIMT-----C-GTADSELVSFDRLIKNVTEQIQSKLGGL---ADTAAKALG---GSRRKRED-------------EDYACAKIRLGGTAYRSCVNKISDIKLNCTSAVGKLALCYCHEDNCNNA 255
+G+ C VG GNAS +LP T ++ E+ DK K + C + DS L + + + KNV ++I+ + GL ++ ++ L R+KRED +ACAK+ +GG AYRSCV K+ +KL C S G L++CYCHE+NCN+A
Sbjct: 21 HGIYCLVGKGNASEVLPTDITMDQDEIKSMMKDKGVLKYGSFISRECDNSKDSALKNIEEITKNVKKKIEDGINGLQKIGNSLSETLKLDQKKRKKREDGSDTSAEPSAESSSGFACAKVVMGGNAYRSCVPKVEALKLKCVSGTG-LSICYCHENNCNDA 180
The following BLAST results are available for this feature:
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold3107_size10187 | supercontig | scaffold3107_size10187:4363..9431 + |
Analyses
This gene is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Note | F:GTP binding |
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold3107_size10187:4363..9431+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below. >snap_masked-scaffold3107_size10187-processed-gene-0.0 ID=snap_masked-scaffold3107_size10187-processed-gene-0.0|Name=interferon-induced gtp-binding protein mx|organism=Tigriopus kingsejongensis|type=gene|length=5069bp|location=Sequence derived from alignment at scaffold3107_size10187:4363..9431+ (Tigriopus kingsejongensis)
CAAGCAGCGGATTGCTCTGAAGAATTTCTTGTCAAGGACAAGTGGAACGA
TGGTTGCCGATATCGAACGAGGCACCCGGGAGCCAATCGCCATTTCAGCA
ACCAAGTTTACCAAACTGTGAGCTACAAAACCTACAAAACCATTCTCAAG
GTGGAAAAGCAATGTCCGGATCAATTTCAACGGATTTGGGAAGGCGTCAT
GAAAATGTGGTCTCTCCCAGTTCAAGCCTGGATTCGGGCTTACGGAAACG
GCGAAAGCGTTCTCGTCGAGCATTTGAAGTACGAATGGGACCGTGCCAAC
TCTTGGAATCTGAAGTCAGTGGTCATGGAATGTCCGGTCATTGCGAACAC
TCAATTCGCTCGTGATATTTGAATTGTACCATTGCAAGTGCTAGTAAATG
ATTTAGATCTTGAAAGGAATGTCCTCTATTGTGGTTGAACCGAATTTGGG
TTAATGTGACCTTCAAAACGGGAAAAGGCCGCCACATTGCGTGACTGGTA
ATAGTGCATGGTCATCCATATTTGATCACACCCGATCGGATATACTGATA
ACGTATGCTCGAGTAGCGGACAAATGATTAGTGCTGATCTGCGCGTCGTT
GTCAATAATTTACGTCCCATTATACACATCGCAGAAAGCTCCCATAGAAC
TCAAATAATTCCTTGGAGCCACAAAGAGTCTGGAAAACCCCCGAGAGTCG
CCTTCAAATAAATGCATGGCCAAATGGGAACGACATCACCCGGTTCCTAA
GGGTATGCTGTACCTTGATTTTTCCTGGCTTGGTTACACCATTGCAACAC
TAGTAATGATGGAAAAGACTTTCCGCACCTGGAATTCCAGAGCTTTTATT
TAGGCATTATAACATCTTGAAAGAAAAGTTTCACGCTTGAGAATATTTTC
CAGCGGAGAATATTTTTTACTTCAAAGATTGGAACAGTTAGAGCTACTAC
ATGTGTGGATAACTTGTAATTTTGAAGGTACTTTCAATCTAAGGACAAGT
TTTACATGCAGGAGGCAATCGAAATAGGGCTCACTGATACTAACCCAGAA
GGTTCCAAAGGGTTAAAAAGCGAAACATAGTTTTCATTATGAATATGAAA
ATATGTTTTCACTCGCCTGATAGTTCCAAGAGATGAATGTAGAGGGAGGG
GAACCCTCCCTCTACTGAAGAAGGTATACAGTGCTAGTGCTTATAGGACC
AATGAAGTAATGAACCGACGTGAGTAACAATCTTGAAACTGTAGACAACC
TCTTCTGGGATCGTGGGAACCACCTCAGGGTGGGAGGGTGGGTGGTTACC
CACGTCCGACTTGTTCGGAAAACTTCACGGAAGAGGCCGCTCTAGCTCAG
CTGCCATGCCACTTGGGCCGGTATTCGGCTTTTGGCAGGGCGGGAGATTC
AAACCAAGCTAGGNNNNNNNNNNNNNNNNNNNNNACTTGTAATTTTGAAG
GTACTTTCAATCTAAGGACAAGTTTTACATGCAGGAGGCAATCGAAATAG
GGCTCACTGATACTAACCCAGAAGGTTCCAAAGGGTTAAAAAGCGAAACA
TAGTTTTCATTATGAATATGAAAATATGTTTTCACTCGCCTGATAGTTCC
AAGAGATGAATGTAGAGGGAGGGGAACCCTCCCTCTACTGAAGAAGGTAT
ACAGTGCTAGTGCTTATAGGACCAATGAAGTAATGAACCGACGTGAGTAA
CAATCTTGAAACTGTAGACAACCTCTTCTGGGATCGTGGGAACCACCTCA
GGGTGGGAGGGTGGGTGGTTACCCACGTCCGACTTGTTCAGAAAACTTCA
CGGAAGAGGCCGCTCTAGCTCAGCTGCCAAGCCACTTGGACCGGTATTCG
GCTTTTGGCAGGGCGGGAGATTCAAACCAAGCAAGCGTCACTCTCTGGTG
GAGTGAAAACTTTACTTTTATCTCGTCGTGCAACTTTCGGACCACAAGTG
ACCTTGGAAAGTATGAAATTTAATTAATATGTTCTTCGCGTTTCCCAAGG
GTTCAAAGGTCTCCTCAAGCCTATCTAAATCTTTTACGATTATCCAAAGA
CGTGAAGAGTTCAAATATTCAACTTGTAGCATGTTATTTTCAGCATCGTG
CATTTGGAGTGGAGATTGTTGAATTGTTAACTTATAATGCTTGGCTCTTG
TCATCTATATGTATTGCTTTCATTTGCGTACAACTGTTGACCATTTTCGA
AGGCTGATGTAAGTGGAATGGTTTTAATTTGGTGTGAATAATTTTACTCA
TGTCCTGATTTGTGATTTGTAGCCTGGGTACATTTAATGTTCGAATTAGG
GCTGCGCCGAAAATTTCCTTTTTCGGTCAAAAGTAAGTTGATGGTGGCAA
AGAATGATCAAATTGGGGGTCATTTTTACTTATAAATACGAGTGTAAAAT
ATAATATTTTGTTGTAGCAGGGTCCAAGTTTTGTAACATGCAAAATTTCG
TTGCCTAGTTTTTGTTCTGGAAGCAAGATCGATGGCCCAATAAATTATCT
GATCCATCATTGTTCTTGCATTTGAAGGATGGAAGTCCAATTCAGGAATA
CACATTCTCTACCTCTGTCGCTGATTTGAGGCGTAGAAGTCTCAGCCATT
TCGGAAGCACCGCAAAGGCGTAGAGGTCCTCTTTTTATATAAGAATCGTT
CCATCAGGGACTCCAGGTACGATTTCGGCGGGAGAGTCGTGGGACTTTTC
TGGAACTCCTCCAACATGCGGAAAACACAGGGAGGAGGGAGAACTCGTCA
CACGCTACCAACACGAGCCTCTTCTCTCAGTGCGTTTTGAGCAGTGGTTC
AAAGAACTTTCCCTCCGTTGACAATACATCAAAATGAAGTCCATCATTCT
GGCTACCGTCTGTACCCTGGTACTCCAGGCATCTCAAGGTAGAGTGATCC
TAGCGCCATCGTCAAACAGCACCTCTCATTCATGGGTTTCTATTGTGTTC
TCTTCCAGTCAACGGGCTCAAGTGCTTTGTTGGAAGTGGCAATGCATCCG
CCATTTTGCCTGCCACGGCCGAGGAATTCGAGATGCACGAAAAGTCCAAC
GACAAGCACGAGTTCAAGATCATGACTTGTGGGACGGCCGACTCCGAGCT
GGTCAGCTTCGACCGGCTCATCAAGAATGTCACCGAGCAAATCCAGTCTA
AACTGGGTGGTCTGGCCGACACGGCAGCCAAGGCCTTGGGCGGAAGTCGC
CGGAAGCGCGAGGATGAGGATTATGCTTGCGCCAAGATTCGTTTAGGAGG
AACCGCGTATCGATCGTGTGTGAACAAGATCAGCGATATCAAGTTGAACT
GTACCTCGGCAGTGGGCAAATTGGCCCTGTGCTACTGTCACGAGGACAAC
TGCAATAACGCTCCACTTGCCAGTCCCCTATTTGGCGGCATCGCACTGAG
CCTGGCTCTGATTGTGTATGCAAACCATTAAAGCATTGGAAAACCAATGG
AACTACCTATTCAATCTTGCATGGTTGTATTGATTATTGGCTACAAAGAC
ATTTGTGGTTATCACTCATCACAGAGCTTGAAATAAATTTGGCAAAATCA
CTTTTTCACACAAAGATGGGGCCTTTCTTTTAGATGCTATCCATCAAACT
AACGAGGAGGTCGTTCATGTTTTCTTGAATGCTCAAGCCTGAATAGGTTC
GATCCTCCAAGAATTCGGATTGTATATTTTTTTTGAGTGTAGCCAGCAAC
TTGGTGACATGCTTTACCTTCACCAGGTCGTGGCTCAAATCCGATTCTAC
TAAGCTCGACTTCAGGTCGTAATTCTCTTGCTTGAGCCGTTGGATCTCCT
CTTTCAAGGTCGCATAGTTGGACTTCCACTCGGACTGCTTTTCCACGAAA
CTCTCTGATTTTTCTGGGAAATCCGCGTGGCCCTGATTCAGAAGTCTCTC
CAGTTTGGCATCCATCCTCGACAAACTCATACAGATCTCTGCATTTTGAA
GCCGATTCTCGGCCAAAACGATATCCGTCAGTGTCCCTGCTTTTCCCCCC
CGTGGATCTTCTTGGTCCGCTGGACGTGAACTCTGCGTCTCTCTGTCTCG
AATTCCAGGCAAAGTAGATTGTCCAATCTTGGTCATCCTTGAGCTGATGC
CCAAAAACTGATCCATCCCCAGATCTGGTTTCGGCTGCATTGGAAGTTCT
TCCTTGATTGTCACGAATAAGCCGATGGTTCCAGTGATATCTTTGTCCAA
CTTCAGAAAGGGCATCGAGCTACCATCCTGAATGGAGCAAATGATGAACT
TCTTGCCTATTGCCTGGAACCAAGAGAAATGATCTCCACGGAGGTTATCG
TGACGCTCAATCGCTTCTCCTAGCATTCCATTCTCCACTTGATGGCAGGT
CACATCGAAAGTTCGGATGGTGCGATCCCGGAACGGTTTGGACAGTTCCA
AATCTTGCACTAAAAGTCCTTGGGGACCTCGTCGAAATTTTTCAATGGTA
ACACTGACTGCAAGGTGCTCCAGATCTGCGGTAGAATGGAAAAGTATACT
CCAGAGGGTCTGCTTGGAGTCGACAAAGTTGCAATAGAAGTTATCTTGGA
CCAACAACTGAAATTTCTCTTGGATCTGAGCCGTGCACAATCGCTCTTTT
TGCGATCGGTAGAGGACAAGCAGTGTGGTATTGAGGATTTCCGTAATTGT
GATCCGCACCTTGCCCATGGGTACGAACTGATTGCTGTTGGTGTCCAAAT
GGAACGCATCCACCACCACTGACTCAACCCTAGGAGGGGGGCCGCTGCTG
TCTTTTATTTTGGCTCCTTGTGATCCCGTTCCAGGCTCCTTCGGGGCTCG
ATACTTCAAGTCTTGGCCTTGGGACTTGCGATTTGGCGAAAACAAGGCAC
CCAAAGTCGATCCATTGGTTCTGGGCGCGAAGGGGTCTTCGCCTTCCTCC
AAGTCGGAAGCTCCACTCGCGAGGATGTCCATGTTGATCTGATTCCCTAA
CTACTCGACCCGCCCAATCAGACGAGCTTGTATGTACAAAGAGATAACGC
AATGCGTTTATAGCTGCCTATGTTCGTATGCCCAATAGTAATGTTAGTAG
ATAACAGGTTATGGCGTTT back to top
Synonyms
The feature 'interferon-induced gtp-binding protein mx' has the following synonyms
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