---NA---, snap_masked-scaffold425_size175135-processed-gene-0.14 (gene) Tigriopus kingsejongensis

Overview
Name---NA---
Unique Namesnap_masked-scaffold425_size175135-processed-gene-0.14
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of ---NA--- vs. L. salmonis genes
Match: EMLSAG00000009767 (supercontig:LSalAtl2s:LSalAtl2s632:219800:221127:-1 gene:EMLSAG00000009767 transcript:EMLSAT00000009767 description:"maker-LSalAtl2s632-augustus-gene-2.14")

HSP 1 Score: 84.7297 bits (208), Expect = 1.304e-17
Identity = 34/98 (34.69%), Postives = 60/98 (61.22%), Query Frame = 0 
Query:  619 EGQATTPG-----SSKRSALKCSKCPEVYENPAKFKLHFLNHFKEQMISRLPSSKPFSCPECGAMNRDRLTLLRHWGLAHKKILEYCTEQELQGAPLD 711
            +GQ ++P      S K   +KC  C   ++     + H LNHFK+++   LP+SKP++CP+C    RDR+TLLRH+  +H+ + + C+E +++G  ++
Sbjct:  304 DGQQSSPTKKTSPSKKGRLVKCKFCDLTFDKLYNLRNHILNHFKDKLYPYLPASKPYACPDCYIEMRDRITLLRHYSYSHRHVFKLCSEDDVRGVVME 401
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BLAST of ---NA--- vs. L. salmonis genes
Match: EMLSAG00000000427 (supercontig:LSalAtl2s:LSalAtl2s1068:107944:120934:1 gene:EMLSAG00000000427 transcript:EMLSAT00000000427 description:"maker-LSalAtl2s1068-snap-gene-1.23")

HSP 1 Score: 58.151 bits (139), Expect = 1.143e-8
Identity = 29/93 (31.18%), Postives = 47/93 (50.54%), Query Frame = 0 
Query:  623 TTPGSSKRSALKCSKCPEVYENPAKFKLHFLN-HFKEQMISRLPSSKPFSCP--ECGAMNRDRLTLLRHWGLAHKKILEYCTEQELQGAPLDE 712
            TT  SS ++ + C+ C    +    F  H +  HFK++++  +P  KPF CP   C    RDR  L  H+G+ HK +L+   +   +  P +E
Sbjct:  815 TTSSSSDKNMMDCNLCTYKCKTMGDFMKHLVKVHFKQKLLDFMPKQKPFICPWPSCSNEKRDRFNLAVHYGMTHKVVLQMLEDMTNESTPTEE 907

HSP 2 Score: 53.1434 bits (126), Expect = 3.669e-7
Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 0 
Query:  634 KCSKCPEVY---ENPAKFK-LHFLNHFKEQMISRLPSSKPFSCPECGAMNRDRLTLLRHWGLAHKKILEYCTEQEL 705
            KC  C E +    N  + K  H ++HFK+ + S LP SKP+ CP+C    +D   L RH GL+HK +     +QEL
Sbjct: 1352 KCELCGEEFTASSNKVRDKGTHLMSHFKDNISSLLPPSKPYKCPKCTYEAKDLFNLSRHLGLSHKIVFSL-MQQEL 1426

HSP 3 Score: 52.7582 bits (125), Expect = 4.419e-7
Identity = 20/70 (28.57%), Postives = 39/70 (55.71%), Query Frame = 0 
Query:  629 KRSALKCSKCPEVY-ENPAKFKLHFLNHFKEQMISRLPSSKPFSCPECGAMNRDRLTLLRHWGLAHKKIL 697
            K   + C+ CP+ + +N   +  H + H +  +   LP  +PF+CP+C  +   R+ LL H+G+ H +++
Sbjct: 1007 KEGDISCNFCPKTFAQNEKDYLKHIILHLRRMLYRALPDREPFTCPKCSFVESGRVELLFHYGMVHTEVV 1076
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BLAST of ---NA--- vs. L. salmonis genes
Match: EMLSAG00000006827 (supercontig:LSalAtl2s:LSalAtl2s385:122699:145346:1 gene:EMLSAG00000006827 transcript:EMLSAT00000006827 description:"maker-LSalAtl2s385-augustus-gene-1.13")

HSP 1 Score: 52.7582 bits (125), Expect = 2.523e-7
Identity = 32/115 (27.83%), Postives = 52/115 (45.22%), Query Frame = 0 
Query:   40 SLQTLRQAEAFTDLRFLCRPKVESKKSWRSLNAHRALLAEHSLLLRELFATTELKQPGSPVFIVLAETEPALMEKLLHYLYLGPIKVKPEEKVDLWELAQVLGLAGLQFLSDPPP 154
            +L  L+  E F D+   C          R++ AH+ +L+  SL  R++F  T    P     I+L +T+ + +E L+ Y+Y G   +  E      + A  L + GL   S P P
Sbjct:   20 ALGNLKLDEDFVDVTLSCE--------GRTIKAHKVILSACSLYFRDVFRETPCNHP----IIILKDTQYSDLESLVKYVYQGQXYISQENLSSFLKTADALQIKGLAEQSQPAP 122
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BLAST of ---NA--- vs. nr
Match: gi|1325264520|ref|XP_023335436.1| (nucleolin-like [Eurytemora affinis])

HSP 1 Score: 87.8113 bits (216), Expect = 4.241e-14
Identity = 53/166 (31.93%), Postives = 80/166 (48.19%), Query Frame = 0 
Query:  628 SKRSALKCSKCPEVYENPAKFKLHFLNHFKEQMISRLPSSKPFSCPECGAMNRDRLTLLRHWGLAHKKILEYCTEQELQGAPLDEPSTPPHIPALDVVPAQTSPVASDHDQPATALSQDYDNISPVVPVPVVASNAAQFTSSSDDEFQVKNIATTAIKSFDELFGS 793
            S+++   C KC   Y   +  K H L+HFK+++ S+LP+ KP++CP C     D  TL++H+   HK+IL+YCT  E++G P    +    +     V    SP  S   +          NIS              F+ S DDE + K+      +SFD+LFGS
Sbjct:  573 SEKNVAVCFKCLIEYSKVSDLKNHLLDHFKKELRSKLPNKKPWTCPTCSKKMSDVNTLIKHFAYDHKEILQYCTADEIEGKPGGAKNGVERL-----VSKSPSPEKSRTHKM---------NIS--------------FSDSEDDETENKDNLKNVAQSFDDLFGS 710
The following BLAST results are available for this feature:
BLAST of ---NA--- vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAG000000097671.304e-1734.69supercontig:LSalAtl2s:LSalAtl2s632:219800:221127:-... [more]
EMLSAG000000004271.143e-831.18supercontig:LSalAtl2s:LSalAtl2s1068:107944:120934:... [more]
EMLSAG000000068272.523e-727.83supercontig:LSalAtl2s:LSalAtl2s385:122699:145346:1... [more]
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BLAST of ---NA--- vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of ---NA--- vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 1
Match NameE-valueIdentityDescription
gi|1325264520|ref|XP_023335436.1|4.241e-1431.93nucleolin-like [Eurytemora affinis][more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold425_size175135supercontigscaffold425_size175135:163593..166458 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold425_size175135-processed-gene-0.14-mRNA-1snap_masked-scaffold425_size175135-processed-gene-0.14-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold425_size175135:163593..166458+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold425_size175135-processed-gene-0.14 ID=snap_masked-scaffold425_size175135-processed-gene-0.14|Name=---NA---|organism=Tigriopus kingsejongensis|type=gene|length=2866bp|location=Sequence derived from alignment at scaffold425_size175135:163593..166458+ (Tigriopus kingsejongensis)
CGTGGAACGCCGTGGAACGCCGTGGAACGCTCGGGAAACTTGAAGCCAGT
TGCGTGATCGAGTGCGAGGTCGACCTGGCCGTCATGAAGGGAGGCGGTCC
CAAGAGTCGTCGGTCTGCCCGAGCCTCGGGGCGGGGCGAGCCTCAGATGG
TGCTCTCGGATCCGATGCGCCACTTCCAAGTGAGTATTGAGCCCGTCCGA
AGACGGATCTCCTGTCGGCCGGTCGATTGCATGGCCCGCCTCATTTTCAG
GCCGTGGGTCGGAGCCTCCAGACACTGCGACAGGCCGAGGCCTTCACGGA
TTTGCGATTTTTGTGCCGTCCCAAGGTGGAGAGCAAGAAGTCCTGGCGCT
CCCTCAACGCCCATCGCGCCCTCTTGGCCGAGCACTCGCTGTTGCTCCGG
GAACTCTTCGCCACCACCGAGCTCAAGCAGGTAAGACAGCTCCTACGAGT
CTCCTCCTCCCTCCTCCTCCCTCCTCCTCCCTCCTCCACATTGACCAGGC
GCTAACCCCACCCATGCTTGCTTCCAGCCGGGTAGCCCGGTCTTTATCGT
CCTGGCCGAGACGGAACCGGCCTTGATGGAAAAGCTCCTCCACTACCTGT
ACCTAGGTCCGATCAAGGTCAAGCCGGAGGAAAAGGTCGACTTATGGGAG
TTGGCCCAAGTTCTAGGCCTGGCTGGGCTCCAATTTCTGAGCGACCCACC
ACCCCCAGGGACGCCCGTGGCCTCCGCCCCGGCACTCGCGCTCAAAACCC
CCAAGTCCACGCCCAAGCGGCGAAAGAGCACGCCTCCGCCACCACGCGCC
CAGACTGACGCGCCCACCTCCAATCCGGCGTCGCCGGCGACCTCGCGTCG
CCGGCCTCCCGTTCGCTCAGCTGAGGACGAGGTCCCGAGCCGGGCCCCGC
CGCCTTCGCGTAGCCCTTCCAGTCGGCGACGCGTGTCCATGGCGGCCAAG
TCGATCGAGGCCGCCCCGACCCCGATCGAGGACGAGCTGATCAAGCAGGC
TCAAAGTCTGCAATCCCAAGTGAGACTCGAAGCCGTGGAAAAGAGTGCCA
ACTCGGAAATCCGTAAATTTTACCAAGCCGCATCCTCGTCGTCGAGTGCC
TCGACCCCGCCCGTTAAGCGCGGACCTCAGCCCCAGCCACCCGTTCGCAA
GGTTCAAAAGACGCCCATGGCCCTGAAACGGCGAATGCCCGGGCCCGACG
AGAAGAAGGCGGAAGCCAAAGAACCCTCGAAGAAGCTTAAGCCCGACGAG
ACGAGCTCGGACCTGGACACGGATGAGGTACGCAACCGAAAGAAGGAGGC
GCTAATCCCCGAGCGAATGAGTCAACGAGCCAAAAGAGTGCCATTGAGGA
ATCGCGACACCAGCCCGGAGACTCCCATTCGGTCGCCCATCCGGTCCCCC
ATCCGGTCCCCCGCCAAGACCCCTATCCAATCCCCAGCATTGAAAGAGCG
TGCCGCTCCGAAAGATGCCAGCCCGTGCACGTCCAAGCCCCGAATCGGGC
CCAAATCAAGGCTCGGGCCCAAGTCCCGGCGAATCCCATCATTGCCTCCG
CCAGAGTCTAAGCAGTCAGAAGAGACAGTTGCTGCGGCCGAAGTCAACCC
CACGATGGTCGAACCGAGTCCCACGGTGGATGAAATCAACCCGACGCTAA
CCGAAAACGGAAGTAGTCCAACCGCAGTGATCGCCAAGGCCAAGAAACCC
AGGTCGGAGCAACCGGATCTCTTCGTGACCGAGAACATCATGTACTGCCA
CTGCGGCTCCATCTTCCTCACCAACGATGCCATGGAGCGCCATCGAGCCA
CCGCCCACGATGGGAGCGAGCCCGAAGATTCCTCGGAGGAGGACAGCTCC
TCCGAGGTCGACGAGTTTGTGTCCGCCGCTCCCAAAGAGATGAAGAAGAA
ATCGCCGGCCAAAATCAGGGAGGAGCGACGCCGCAGCCAAAAGTCGCCTC
CCACTCGAGACTCGGACGAAGACGACACTCCCTCGCCGAGCATGGAGAGT
CCCAACGCCTTGCCCTCAAGGATTGCTTCTGCTCATCGGAAAGATCGTGC
CGACCTGACTCCCAAGAGCCCCAAGCGAGCTCGCAAAGGACCCGGTGAAG
GGCAAGCAACCACCCCAGGGAGTTCGAAAAGGAGTGCATTGAAGTGCTCC
AAGTGCCCCGAGGTCTACGAGAATCCAGCCAAGTTCAAGCTCCACTTCCT
CAACCATTTCAAGGAGCAAATGATTAGTCGCCTTCCAAGCTCCAAACCGT
TTTCATGCCCCGAGTGTGGGGCTATGAATCGGGATCGACTGACGTTACTC
CGCCATTGGGGACTGGCCCACAAGAAGATTCTCGAGTACTGCACCGAGCA
AGAGCTTCAAGGAGCGCCACTTGACGAGCCCTCCACTCCTCCCCACATTC
CCGCATTAGACGTTGTCCCTGCTCAGACAAGTCCAGTTGCTTCGGACCAC
GACCAACCCGCAACTGCTTTAAGCCAAGACTACGACAATATCTCTCCCGT
AGTACCCGTGCCAGTTGTCGCTTCGAACGCGGCCCAGTTCACCTCGAGCT
CGGATGACGAATTCCAAGTGAAAAACATTGCCACAACGGCCATCAAGAGC
TTCGACGAGCTCTTCGGCTCGGGCGAGGCGAATGGCAAGACTGCTGCAGT
GCCCCTTGTGAGTGCAACTACGTTTAACCGAGGTAGCGACTCATCCGAAC
ATGAGTGAAAGGCTCCGAGGACAAATATGAATCCATCAAATGTTGTCAAT
GGTATTGGTCCGTGCACAAAGCTCCGGGCCAAGGGGAGAAAAGGGATGTC
GAGCATGTTTGGAAATGCTTCCAAATTCAATTTAGTGTACAGCACATTGT
TAGTCGACCGAAGAAG
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Synonyms
The feature '---NA---' has the following synonyms
Synonym
Tk05819
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