ecdysone receptor a isoform, snap_masked-scaffold464_size163657-processed-gene-0.14 (gene) Tigriopus kingsejongensis

Overview


Name	ecdysone receptor a isoform
Unique Name	snap_masked-scaffold464_size163657-processed-gene-0.14
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of ecdysone receptor a isoform vs. L. salmonis genes
Match: EMLSAG00000012651 (supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24")

HSP 1 Score: 90.8929 bits (224), Expect = 5.385e-21
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 0

Query:   24 CRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVR 108
            C +C D    H  IHYGG++C+SCRAFFRR+    K T + C  +  C IT+ TR+ CQ CRY  CL +GM+P  VL+ ++KS R
Sbjct:   91 CNVCGDKAPDH--IHYGGIACFSCRAFFRRS--VPKHTTYFCSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSSR 171

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BLAST of ecdysone receptor a isoform vs. L. salmonis genes
Match: EMLSAG00000008261 (supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3")

HSP 1 Score: 77.7962 bits (190), Expect = 1.669e-16
Identity = 39/89 (43.82%), Postives = 54/89 (60.67%), Query Frame = 0

Query:   12 KERALLAKQLRQCRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVL 100
            K+RA   +++  C IC D    H  IHYG ++C SCRAFFRRA   + +  + C  +  C IT +TR+ CQ CR+N CL AGM+   V+
Sbjct:   52 KKRAKFIRKV-TCHICSDTANDH--IHYGAIACXSCRAFFRRAVICNAE--YHCSRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWVM 135

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BLAST of ecdysone receptor a isoform vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5")

HSP 1 Score: 76.2554 bits (186), Expect = 5.839e-16
Identity = 37/87 (42.53%), Postives = 46/87 (52.87%), Query Frame = 0

Query:   24 CRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQC-----KYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQK 105
            CRIC D+   H   HYG ++C+SCRAFF R      +  F+C          C IT  TR  CQ CRY  CL AGM P  V T +++
Sbjct:  137 CRICGDIAPPHN--HYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEER 221

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BLAST of ecdysone receptor a isoform vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19")

HSP 1 Score: 75.8702 bits (185), Expect = 7.039e-16
Identity = 60/178 (33.71%), Postives = 85/178 (47.75%), Query Frame = 0

Query:   22 RQCRICQDVILKHTCIHYGGLSCYSCRAFFRRANQA-SKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRFRKKRQKAAQPPKERLTILECKSPERPHLEGASYTRALVPKVEQPEQQQSQLQTSLGFDLPDIGDNI-EDLLSNFSSGDSNQEPLVSDFV 197
            R C+IC +V  KH  ++YGG  C SCRAFFRR+ Q  S K    C    +C I +KTR+ CQ CR+  C+ AGMR   V  PD      R++R K     K  +T+   K P              +P    PE   S ++ S+ F    I +N+ ++ L N ++        + DFV
Sbjct:  105 RLCQICGEVAGKH--VYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVF-PD------RERRSK-----KSAMTLNNNKPP--------------LPSFNDPEGLTS-IEVSIVF---TINNNLHKNFLDNLNTMVKRDSDFLIDFV 250

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BLAST of ecdysone receptor a isoform vs. L. salmonis genes
Match: EMLSAG00000011907 (supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22")

HSP 1 Score: 74.3294 bits (181), Expect = 2.626e-15
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 0

Query:   22 RQCRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQC-KYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPD 103
            R C+IC +V  KH  ++YGG  C SCRAFFRR+ Q +    F C     +C I ++TR+ CQ CR+  C+ AGMR   VL PD
Sbjct:  104 RLCQICGEVAGKH--VYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRASWVL-PD 183

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BLAST of ecdysone receptor a isoform vs. L. salmonis genes
Match: EMLSAG00000005090 (supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-1 gene:EMLSAG00000005090 transcript:EMLSAT00000005090 description:"augustus_masked-LSalAtl2s269-processed-gene-3.0")

HSP 1 Score: 69.707 bits (169), Expect = 8.120e-14
Identity = 33/88 (37.50%), Postives = 52/88 (59.09%), Query Frame = 0

Query:   24 CRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRFRK 111
            C +C D   + +  HY  L+C  C+ FFRR+   +K + + CK+  +CEI +  RRKCQ+CR   C   GMR E V+ P++  ++ R+
Sbjct:  173 CLVCGD---RASGYHYNALACEGCKGFFRRS--ITKNSNYTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAECVV-PERTCIQKRQ 254

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BLAST of ecdysone receptor a isoform vs. L. salmonis genes
Match: EMLSAG00000004451 (supercontig:LSalAtl2s:LSalAtl2s231:945915:949068:1 gene:EMLSAG00000004451 transcript:EMLSAT00000004451 description:"snap_masked-LSalAtl2s231-processed-gene-9.18")

HSP 1 Score: 66.2402 bits (160), Expect = 1.170e-12
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 0

Query:   24 CRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENV 99
            C +C D I   +  HYG  SC SC+ FF+R  Q  K  V  C   + C +T+ TR+KC +CR++ CL  GM+ E +
Sbjct:  155 CPVCGDKI---SGFHYGIFSCESCKGFFKRTVQNKKNYV--CLRGSQCPVTISTRKKCPACRFDKCLNIGMKLEAI 225

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BLAST of ecdysone receptor a isoform vs. L. salmonis genes
Match: EMLSAG00000008543 (supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1 gene:EMLSAG00000008543 transcript:EMLSAT00000008543 description:"maker-LSalAtl2s527-augustus-gene-1.53")

HSP 1 Score: 65.855 bits (159), Expect = 1.856e-12
Identity = 32/90 (35.56%), Postives = 47/90 (52.22%), Query Frame = 0

Query:    5 SGLKNQNKERALLAKQLRQCRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGM 94
            SG    N   +   +Q   C IC+D   + T +HYG ++C  C+ FF+R  Q   K ++ C  +  CEI    R +CQ CR+  CL+ GM
Sbjct:  264 SGGPGDNNNPSSQPQQSLVCMICED---RATGLHYGIITCEGCKGFFKRTVQ--NKRIYTCVADGECEINKAQRNRCQYCRFQKCLQKGM 348

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BLAST of ecdysone receptor a isoform vs. L. salmonis genes
Match: EMLSAG00000008071 (supercontig:LSalAtl2s:LSalAtl2s47:304551:317770:1 gene:EMLSAG00000008071 transcript:EMLSAT00000008071 description:"snap_masked-LSalAtl2s47-processed-gene-3.10")

HSP 1 Score: 65.4698 bits (158), Expect = 2.329e-12
Identity = 37/96 (38.54%), Postives = 50/96 (52.08%), Query Frame = 0

Query:   20 QLRQCRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRFRKKRQK 115
            Q R C +C D+    +  HYG  SC +C+AFF+R  Q + +       E  CEI  + R+ CQ+CR+  CLR GM  E V     +  R R  RQK
Sbjct:  267 QRRTCLVCGDIA---SGFHYGVSSCEACKAFFKRTIQGNIEYTXPASNE--CEINKRRRKACQACRFQKCLRMGMLKEGV-----RLDRVRGGRQK 352

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BLAST of ecdysone receptor a isoform vs. L. salmonis genes
Match: EMLSAG00000007361 (supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1 gene:EMLSAG00000007361 transcript:EMLSAT00000007361 description:"maker-LSalAtl2s418-augustus-gene-3.13")

HSP 1 Score: 63.1586 bits (152), Expect = 1.614e-11
Identity = 32/111 (28.83%), Postives = 54/111 (48.65%), Query Frame = 0

Query:   16 LLAKQLRQCRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRFRKKRQKAAQPPKERLTI 126
            L    ++ C +C D   + T  HYG  SC  C+ FFRR+    K+ V+ C+    C +    R  C+ CR  +C++AGM+ ++ +  ++  +  RKK           LT+
Sbjct:  143 LAPNNIQNCAVCGD---RATGKHYGAASCDGCKGFFRRS--VRKERVYGCRQNRACIVNKDKRNNCRYCRLKMCIKAGMK-KSAVQNERDRISCRKKTSAKDMNSANELTV 247

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BLAST of ecdysone receptor a isoform vs. SwissProt
Match: gi|146328613|sp|O18531.2|ECR_LUCCU (RecName: Full=Ecdysone receptor; AltName: Full=20-hydroxy-ecdysone receptor; Short=20E receptor; AltName: Full=EcRH; AltName: Full=Ecdysteroid receptor; AltName: Full=Nuclear receptor subfamily 1 group H member 1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.331e-17
Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = 0

Query:   24 CRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRFRKKRQK-----------AAQPPKERLTILECKSPERP 135
            C +C D   + +  HY  L+C  C+ FFRR+   +K  V+ CK+   CE+ +  RRKCQ CR   CL  GMRPE V+  +Q +++ R+K+ +           A +  KE L ++ C+ P  P
Sbjct:  301 CLVCGD---RASGYHYNALTCEGCKGFFRRS--VTKNAVYCCKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRREKKAQKEKDKIQTSVCATEIKKEILDLMTCEPPSHP 418

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BLAST of ecdysone receptor a isoform vs. SwissProt
Match: gi|461984|sp|P34021.1|ECR_DROME (RecName: Full=Ecdysone receptor; AltName: Full=20-hydroxy-ecdysone receptor; Short=20E receptor; AltName: Full=EcRH; AltName: Full=Ecdysteroid receptor; AltName: Full=Nuclear receptor subfamily 1 group H member 1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.186e-17
Identity = 44/113 (38.94%), Postives = 64/113 (56.64%), Query Frame = 0

Query:   24 CRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRFRKKRQKAAQPPKERLTILECKSPERPH 136
            C +C D   + +  HY  L+C  C+ FFRR+   +K  V+ CK+   CE+ +  RRKCQ CR   CL  GMRPE V+  +Q ++   K+R+K AQ  K+++T     SP   H
Sbjct:  264 CLVCGD---RASGYHYNALTCEGCKGFFRRS--VTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAM---KRREKKAQKEKDKMT----TSPSSQH 364

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BLAST of ecdysone receptor a isoform vs. SwissProt
Match: gi|1706575|sp|P49882.1|ECR_CHITE (RecName: Full=Ecdysone receptor; AltName: Full=20-hydroxy-ecdysone receptor; Short=20E receptor; AltName: Full=EcRH; AltName: Full=Ecdysteroid receptor; AltName: Full=Nuclear receptor subfamily 1 group H member 1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.920e-16
Identity = 43/119 (36.13%), Postives = 69/119 (57.98%), Query Frame = 0

Query:    6 GLKNQNKERALLAKQLRQCRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRFRKKRQKAAQPPKERL 124
            G K+ +K+  +  +Q   C +C D   + +  HY  L+C  C+ FFRR+   +K  V+ CK+   CE+ +  RRKCQ CR   CL  GMRPE V+  +Q ++   K+++K AQ  K+++
Sbjct:   97 GKKSSSKKGPVPRQQEELCLVCGD---RASGYHYNALTCEGCKGFFRRS--VTKNAVYCCKFGHECEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAI---KRKEKKAQKEKDKV 207

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BLAST of ecdysone receptor a isoform vs. SwissProt
Match: gi|6015050|sp|O18473.1|ECR_HELVI (RecName: Full=Ecdysone receptor; AltName: Full=20-hydroxy-ecdysone receptor; Short=20E receptor; AltName: Full=EcRH; AltName: Full=Ecdysteroid receptor; AltName: Full=HvEcR; AltName: Full=Nuclear receptor subfamily 1 group H member 1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.397e-16
Identity = 44/124 (35.48%), Postives = 69/124 (55.65%), Query Frame = 0

Query:    3 ATSGLKNQNKERALLAKQLRQCRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRFRKKRQKAAQPPKERLTI 126
            +T G   + K+     +Q   C +C D   + +  HY  L+C  C+ FFRR+   +K  V+ CK+   CE+ +  RRKCQ CR   CL  GMRPE V+  +Q ++   K+++K AQ  K++L +
Sbjct:  142 STDGEARRQKKGPAPRQQEELCLVCGD---RASGYHYNALTCEGCKGFFRRS--VTKNAVYICKFGHACEMDIYMRRKCQECRLKKCLAVGMRPECVVPENQCAM---KRKEKKAQREKDKLPV 257

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BLAST of ecdysone receptor a isoform vs. SwissProt
Match: gi|205371750|sp|P49880.2|ECR_AEDAE (RecName: Full=Ecdysone receptor; AltName: Full=20-hydroxy-ecdysone receptor; Short=20E receptor; AltName: Full=EcRH; Short=AaEcR; AltName: Full=Ecdysteroid receptor; AltName: Full=Nuclear receptor subfamily 1 group H member 1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.447e-16
Identity = 39/101 (38.61%), Postives = 60/101 (59.41%), Query Frame = 0

Query:   24 CRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRFRKKRQKAAQPPKERL 124
            C +C D   + +  HY  L+C  C+ FFRR+   +K  V+ CK+   CE+ +  RRKCQ CR   CL  GMRPE V+  +Q ++   K+++K AQ  K+++
Sbjct:  291 CLVCGD---RESGYHYNALTCEGCKGFFRRS--VTKNAVYCCKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAI---KRKEKKAQKEKDKV 383

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BLAST of ecdysone receptor a isoform vs. SwissProt
Match: gi|2500907|sp|Q24143.1|HR96_DROME (RecName: Full=Nuclear hormone receptor HR96; Short=dHR96; AltName: Full=Nuclear receptor subfamily 1 group J member 1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.889e-16
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 0

Query:   22 RQCRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRFRK 111
            + C +C D  L +   ++  ++C SC+AFFRR   A K+  F C +  NC+ITV TRR CQ CR   CL  GM+ EN+++ + K ++ RK
Sbjct:    5 KNCAVCGDKALGY---NFNAVTCESCKAFFRRNALAKKQ--FTCPFNQNCDITVVTRRFCQKCRLRKCLDIGMKSENIMSEEDKLIKRRK 89

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BLAST of ecdysone receptor a isoform vs. SwissProt
Match: gi|1706576|sp|P49883.1|ECR_MANSE (RecName: Full=Ecdysone receptor; AltName: Full=20-hydroxy-ecdysone receptor; Short=20E receptor; AltName: Full=EcRH; AltName: Full=Ecdysteroid receptor; AltName: Full=Nuclear receptor subfamily 1 group H member 1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.229e-15
Identity = 45/124 (36.29%), Postives = 67/124 (54.03%), Query Frame = 0

Query:    3 ATSGLKNQNKERALLAKQLRQCRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRFRKKRQKAAQPPKERLTI 126
            +T G   + K+     +Q   C +C D   + +  HY  L+C  C+ FFRR+   +K  V+ CK+   CE+ +  RRKCQ CR   CL  GMRPE V+    +S    K+R+K AQ  K++L +
Sbjct:  126 STDGEPRRQKKGPAPRQQEELCLVCGD---RASGYHYNALTCEGCKGFFRRS--VTKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVP---ESTCKNKRREKEAQREKDKLPV 241

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BLAST of ecdysone receptor a isoform vs. SwissProt
Match: gi|1706574|sp|P49881.1|ECR_BOMMO (RecName: Full=Ecdysone receptor; AltName: Full=20-hydroxy-ecdysone receptor; Short=20E receptor; AltName: Full=EcRH; AltName: Full=Ecdysteroid receptor; AltName: Full=Nuclear receptor subfamily 1 group H member 1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.247e-15
Identity = 43/117 (36.75%), Postives = 60/117 (51.28%), Query Frame = 0

Query:   24 CRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVL-TPDQKSVRFRKKRQKAAQPPKERLT-------ILECKSP 132
            C +C D   + +  HY  L+C  C+ FFRR+   +K  V+ CK+   CE+ +  RRKCQ CR   CL  GMRPE V+  P +   R R+K+ K    P    T       I++C  P
Sbjct:  207 CLVCGD---RASGYHYNALTCEGCKGFFRRS--VTKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVIQEPSKNKDRQRQKKDKGILLPVSTTTVEDHMPPIMQCDPP 318

[Close]

BLAST of ecdysone receptor a isoform vs. SwissProt
Match: gi|3915241|sp|O13124.1|VDR_XENLA (RecName: Full=Vitamin D3 receptor; Short=VDR; AltName: Full=1,25-dihydroxyvitamin D3 receptor; AltName: Full=Nuclear receptor subfamily 1 group I member 1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.998e-14
Identity = 41/115 (35.65%), Postives = 63/115 (54.78%), Query Frame = 0

Query:    1 MAATSGLKNQNKERALLAKQL-RQCRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRFRKKRQ 114
            MAAT+ + + + E     K + R C +C D   K T  H+  ++C  C+ FFRR+ +  +K +F C +  +C IT   RR CQSCR   C+  GM  E +LT ++     ++KRQ
Sbjct:    4 MAATTSIADTDME---FDKNVPRICGVCGD---KATGFHFNAMTCEGCKGFFRRSMK--RKAMFTCPFNGDCRITKDNRRHCQSCRLKRCVDIGMMKEFILTDEE----VQRKRQ 106

[Close]

BLAST of ecdysone receptor a isoform vs. SwissProt
Match: gi|10720385|sp|Q20765.2|NHR7_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-7)

HSP 1 Score: 75.8702 bits (185), Expect = 2.618e-14
Identity = 56/177 (31.64%), Postives = 84/177 (47.46%), Query Frame = 0

Query:   22 RQCRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRFRKKRQKAAQPPKERLTILECKSPERPHLEGASYTRALVPKVEQPEQQQSQLQTSLGFDLPDIGDNIE--DLLSNFSS-GDSNQEPLVSD 195
            R C +C D   K   IHYG L+C+ C+ FFRRA +  +   + C++E NCE+T   R  C+ CR+  CL  GM P+ V          R  R+K+    K+  T+L  K          S +R+L  ++  P    S L  S    L +IG   E     +NF   G+ + + L++D
Sbjct:    7 RICAVCGDTPAK---IHYGVLACFGCKGFFRRAVKDGRNK-YVCRFEKNCEVTKFERNACRYCRFRKCLLVGMNPDYV----------RPDREKS----KKGKTVLSKK---------KSVSRSLSYRLADPSDWTSFLSPSSRKQLSEIGKLAETCSTSTNFDGIGNFSLKSLIAD 156

[Close]

BLAST of ecdysone receptor a isoform vs. nr
Match: gi|1325280017|ref|XP_023324670.1| (uncharacterized protein LOC111698547 [Eurytemora affinis])

HSP 1 Score: 110.538 bits (275), Expect = 1.012e-23
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 0

Query:   24 CRICQDVILKHTCIHYGGLSCYSCRAFFRRA--NQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRFRKKRQKAAQPP 120
            CRIC D  ++H  +HYGG  C+SC+AFFRRA   Q   K  FQCK+E+ CEI +K R+ CQSCR+  C+  GM P  VL+ DQ+  RF+K R+     P
Sbjct:   41 CRICGDGAVRH--VHYGGHCCFSCKAFFRRAVNWQTKNKRTFQCKFESGCEINIKNRKTCQSCRFQKCITTGMNPSWVLSDDQRKKRFKKYRETGELSP 137

[Close]

BLAST of ecdysone receptor a isoform vs. nr
Match: gi|657600356|gb|AID52839.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 106.301 bits (264), Expect = 4.058e-22
Identity = 47/107 (43.93%), Postives = 71/107 (66.36%), Query Frame = 0

Query:   12 KERALLAKQLRQCRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRFRKKRQKAAQ 118
            KE  L++    +CR+C +   +H  +HYG ++C+SCRAFFRR+ Q      + C+ +  CEI +K+R+ CQ CRY  CL AGM+P  VL+ +++S RFRK R+K A+
Sbjct:   77 KENPLIS-DTEKCRVCGEPAARH--VHYGSVTCFSCRAFFRRSIQNKAWNNYSCRRQGQCEIMLKSRKNCQKCRYEECLSAGMKPTWVLSEEERSRRFRKTREKKAR 180

[Close]

BLAST of ecdysone receptor a isoform vs. nr
Match: gi|657600358|gb|AID52840.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 101.679 bits (252), Expect = 1.367e-20
Identity = 45/115 (39.13%), Postives = 71/115 (61.74%), Query Frame = 0

Query:    3 ATSGLKNQNKERALLAKQLRQCRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRFRKKRQKAA 117
             TSG++ ++    +  +   +C+ICQD  ++H  +HYG ++C+SC+AFFRR +Q+     F CK    C +  K R+KC+ CRY  C+R GM+P  VL+ ++K  RF+K   K A
Sbjct:   12 GTSGMETED----VSMEPTEECQICQDPAIRH--LHYGAITCFSCKAFFRRTSQSKAYQKFMCKSTGECNVLHKLRKKCRKCRYEKCIRVGMKPSLVLSDEEKIKRFKKSLSKKA 120

[Close]

BLAST of ecdysone receptor a isoform vs. nr
Match: gi|1325258266|ref|XP_023325470.1| (uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258271|ref|XP_023325479.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258277|ref|XP_023325484.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258282|ref|XP_023325492.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258289|ref|XP_023325500.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258292|ref|XP_023325508.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258296|ref|XP_023325515.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258300|ref|XP_023325523.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258306|ref|XP_023325531.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258311|ref|XP_023325539.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258315|ref|XP_023325547.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258319|ref|XP_023325554.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258329|ref|XP_023325561.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258334|ref|XP_023325570.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258338|ref|XP_023325578.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258342|ref|XP_023325585.1| uncharacterized protein LOC111699122 [Eurytemora affinis])

HSP 1 Score: 100.523 bits (249), Expect = 3.160e-20
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = 0

Query:   14 RALLAKQLRQCRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRFRKKRQK 115
            +A L     +C+IC +   KH  IHYG ++C+SCRAFFRR+ Q      + C+   NCEI ++TR+ CQ CRY  CL  GM+   VL+ +++  RFRK R++
Sbjct:   31 QAKLLSPTEKCKICNEPAAKH--IHYGAMTCFSCRAFFRRSIQNKTANSYTCRRSQNCEINLRTRKNCQFCRYQKCLSVGMKTNWVLSEEERQRRFRKVRER 130

[Close]

BLAST of ecdysone receptor a isoform vs. nr
Match: gi|1325316701|ref|XP_023340074.1| (uncharacterized protein LOC111710243 [Eurytemora affinis])

HSP 1 Score: 95.1301 bits (235), Expect = 1.745e-18
Identity = 55/160 (34.38%), Postives = 88/160 (55.00%), Query Frame = 0

Query:   24 CRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEAN-CEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRFR-KKRQKAAQPPKERLTILECKSPERPHLEGASYTRALVPKVEQPEQQQSQLQTSLGFDLPDIG----DNIED 177
            C +C+DV + H   HYGG+ CYSC+AFFRR    SK   ++C+  +N C++++  RR CQ+CRY  C+ AGM+P  VL+ +Q + RF  + R + + P  E          E    E  S   +++   E+  ++Q+++  +L   L D G    D +ED
Sbjct:  274 CPVCKDVAIAH--FHYGGMCCYSCKAFFRRVVNTSKANKYKCRNGSNLCDVSLGNRRSCQACRYRKCVSAGMKPGLVLSDEQCTRRFGPRSRNRVSNPGDEEEVDNPNTMEELQDSEVTSEDLSVLIDGEKSYEEQNRIGRALFIALFDTGSVGSDRVED 431

[Close]

BLAST of ecdysone receptor a isoform vs. nr
Match: gi|1216632039|gb|ASL70531.1| (nuclear receptor [Brachionus calyciflorus])

HSP 1 Score: 93.5893 bits (231), Expect = 7.446e-18
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 0

Query:   23 QCRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRF---RKKRQK 115
            +C +C D   K T  H+GG+SC SC+AFFRR+ Q ++   ++C Y   C++   TR+ CQ CRY  CL  GMRP+ VL+ D++  ++   RK +QK
Sbjct:  121 KCHVCGD---KSTGSHFGGISCESCKAFFRRSVQKNRHEDYKCSYSGECKMNTNTRKICQFCRYKTCLSIGMRPKWVLSDDERHQKYGNRRKNKQK 213

[Close]

BLAST of ecdysone receptor a isoform vs. nr
Match: gi|1046754406|gb|ANW09590.1| (EcR, partial [Monochamus alternatus])

HSP 1 Score: 92.4337 bits (228), Expect = 8.448e-18
Identity = 53/116 (45.69%), Postives = 66/116 (56.90%), Query Frame = 0

Query:   23 QCRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRFRKKRQKAAQPPKERLTILECKSPERPHLE 138
            QC IC D   + T  HYG  SC  C+ FFRR+   +K  V+QCKY  NCEI +  RRKCQ CR   CL  GMRPE V+   Q +V   K+++K AQ  K++       SPE   LE
Sbjct:   38 QCAICGD---RATGKHYGAASCDGCKGFFRRS--ITKNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLTVGMRPECVVPEVQCAV---KRKEKKAQKEKDKPNSTTNGSPEMIKLE 145

[Close]

BLAST of ecdysone receptor a isoform vs. nr
Match: gi|1216631975|gb|ASL70499.1| (nuclear receptor [Brachionus rotundiformis])

HSP 1 Score: 93.5893 bits (231), Expect = 8.638e-18
Identity = 41/97 (42.27%), Postives = 61/97 (62.89%), Query Frame = 0

Query:   23 QCRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRF---RKKRQKA 116
            +C +C D   K T  H+GG+SC SC+AFFRR+ Q ++   ++C Y   C++   TR+ CQ CRY  CL  GMRP+ VL+ D++  ++   RK +QK 
Sbjct:  115 KCHVCGD---KSTGSHFGGISCESCKAFFRRSVQKNRFEDYKCSYSGECKMNTNTRKICQFCRYKTCLSIGMRPKWVLSDDERHQKYGNRRKNKQKT 208

[Close]

BLAST of ecdysone receptor a isoform vs. nr
Match: gi|1216632197|gb|ASL70610.1| (nuclear receptor [Brachionus sp. 'koreanus'])

HSP 1 Score: 92.8189 bits (229), Expect = 1.298e-17
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 0

Query:   23 QCRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRF---RKKRQK 115
            +C +C D   K T  H+GG+SC SC+AFFRR+ Q ++   ++C Y   C++   TR+ CQ CRY  CL  GMRP+ VL+ D++  ++   RK +QK
Sbjct:  111 KCHVCGD---KSTGSHFGGISCESCKAFFRRSVQKNRFEDYKCSYSGECKMNTNTRKICQFCRYKTCLSIGMRPKWVLSDDERHQKYGNRRKNKQK 203

[Close]

BLAST of ecdysone receptor a isoform vs. nr
Match: gi|939244205|ref|XP_014241437.1| (ecdysone receptor isoform X2 [Cimex lectularius])

HSP 1 Score: 92.4337 bits (228), Expect = 1.443e-17
Identity = 59/161 (36.65%), Postives = 84/161 (52.17%), Query Frame = 0

Query:    2 AATSGLKNQNKERALLAKQLRQCRICQDVILKHTCIHYGGLSCYSCRAFFRRANQASKKTVFQCKYEANCEITVKTRRKCQSCRYNLCLRAGMRPENVLTPDQKSVRFRKKRQKAAQPPKERLTILECKSPE----RPHLEGASYTRALVPKVEQPEQQQS 158
            +A S   ++ K+   + +Q   C +C D   + +  HY  L+C  C+ FFRR+   +K  V+QCKY  NCEI +  RRKCQ CR   CL  GMRPE V+   Q +V   K+++K AQ  K++       SPE     P     SYT +L   + +  Q QS
Sbjct:   63 SADSCDGSKKKKGTAVRQQEELCLVCGD---RASGYHYNALTCEGCKGFFRRS--ITKNNVYQCKYGNNCEIDMYMRRKCQECRLKKCLSVGMRPECVVPEYQCAV---KRKEKKAQKDKDKPVSTTNGSPEAIKVEPEPHRVSYTSSLFQSMIKESQTQS 215

The following BLAST results are available for this feature:

BLAST of ecdysone receptor a isoform vs. L. salmonis genes
BLAST of ecdysone receptor a isoform vs. SwissProt
BLAST of ecdysone receptor a isoform vs. nr

BLAST of ecdysone receptor a isoform vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 22


Match Name	E-value	Identity	Description
EMLSAG00000012651	5.385e-21	48.24	supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 ge...	[more]
EMLSAG00000008261	1.669e-16	43.82	supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 ...	[more]
EMLSAG00000004174	5.839e-16	42.53	supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-...	[more]
EMLSAG00000010267	7.039e-16	33.71	supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1...	[more]
EMLSAG00000011907	2.626e-15	46.99	supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1...	[more]
EMLSAG00000005090	8.120e-14	37.50	supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-...	[more]
EMLSAG00000004451	1.170e-12	40.79	supercontig:LSalAtl2s:LSalAtl2s231:945915:949068:1...	[more]
EMLSAG00000008543	1.856e-12	35.56	supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1...	[more]
EMLSAG00000008071	2.329e-12	38.54	supercontig:LSalAtl2s:LSalAtl2s47:304551:317770:1 ...	[more]
EMLSAG00000007361	1.614e-11	28.83	supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1...	[more]

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BLAST of ecdysone receptor a isoform vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|146328613\|sp\|O18531.2\|ECR_LUCCU	4.331e-17	34.96	RecName: Full=Ecdysone receptor; AltName: Full=20-...	[more]
gi\|461984\|sp\|P34021.1\|ECR_DROME	8.186e-17	38.94	RecName: Full=Ecdysone receptor; AltName: Full=20-...	[more]
gi\|1706575\|sp\|P49882.1\|ECR_CHITE	2.920e-16	36.13	RecName: Full=Ecdysone receptor; AltName: Full=20-...	[more]
gi\|6015050\|sp\|O18473.1\|ECR_HELVI	5.397e-16	35.48	RecName: Full=Ecdysone receptor; AltName: Full=20-...	[more]
gi\|205371750\|sp\|P49880.2\|ECR_AEDAE	8.447e-16	38.61	RecName: Full=Ecdysone receptor; AltName: Full=20-...	[more]
gi\|2500907\|sp\|Q24143.1\|HR96_DROME	8.889e-16	41.11	RecName: Full=Nuclear hormone receptor HR96; Short...	[more]
gi\|1706576\|sp\|P49883.1\|ECR_MANSE	3.229e-15	36.29	RecName: Full=Ecdysone receptor; AltName: Full=20-...	[more]
gi\|1706574\|sp\|P49881.1\|ECR_BOMMO	3.247e-15	36.75	RecName: Full=Ecdysone receptor; AltName: Full=20-...	[more]
gi\|3915241\|sp\|O13124.1\|VDR_XENLA	1.998e-14	35.65	RecName: Full=Vitamin D3 receptor; Short=VDR; AltN...	[more]
gi\|10720385\|sp\|Q20765.2\|NHR7_CAEEL	2.618e-14	31.64	RecName: Full=Nuclear hormone receptor family memb...	[more]

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BLAST of ecdysone receptor a isoform vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1325280017\|ref\|XP_023324670.1\|	1.012e-23	49.49	uncharacterized protein LOC111698547 [Eurytemora a...	[more]
gi\|657600356\|gb\|AID52839.1\|	4.058e-22	43.93	nuclear receptor [Tigriopus japonicus]	[more]
gi\|657600358\|gb\|AID52840.1\|	1.367e-20	39.13	nuclear receptor [Tigriopus japonicus]	[more]
gi\|1325258266\|ref\|XP_023325470.1\|	3.160e-20	43.14	uncharacterized protein LOC111699122 [Eurytemora a...	[more]
gi\|1325316701\|ref\|XP_023340074.1\|	1.745e-18	34.38	uncharacterized protein LOC111710243 [Eurytemora a...	[more]
gi\|1216632039\|gb\|ASL70531.1\|	7.446e-18	42.71	nuclear receptor [Brachionus calyciflorus]	[more]
gi\|1046754406\|gb\|ANW09590.1\|	8.448e-18	45.69	EcR, partial [Monochamus alternatus]	[more]
gi\|1216631975\|gb\|ASL70499.1\|	8.638e-18	42.27	nuclear receptor [Brachionus rotundiformis]	[more]
gi\|1216632197\|gb\|ASL70610.1\|	1.298e-17	42.71	nuclear receptor [Brachionus sp. 'koreanus']	[more]
gi\|939244205\|ref\|XP_014241437.1\|	1.443e-17	36.65	ecdysone receptor isoform X2 [Cimex lectularius]	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold464_size163657	supercontig	scaffold464_size163657:44846..45673 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	-

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold464_size163657-processed-gene-0.14-mRNA-1	snap_masked-scaffold464_size163657-processed-gene-0.14-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold464_size163657:44846..45673-

gene from alignment at scaffold464_size163657:44846..45673-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold464_size163657-processed-gene-0.14 ID=snap_masked-scaffold464_size163657-processed-gene-0.14|Name=ecdysone receptor a isoform|organism=Tigriopus kingsejongensis|type=gene|length=828bp|location=Sequence derived from alignment at scaffold464_size163657:44846..45673- (Tigriopus kingsejongensis)
ATGGCTGCTACGTCTGGTTTGAAGAACCAGAACAAGGAGAGAGCGCTCTT
GGCCAAGCAGCTGAGGCAGTGCCGAATTTGCCAGGATGTCATCCTCAAGC
ACACCTGCATCCACTATGGAGGCCTCTCTTGCTACAGCTGTCGGGCATTC
TTCCGGCGGGCCAACCAGGCGTCCAAGAAGACCGTGTTCCAGTGCAAGTA
CGAGGCTAACTGCGAGATCACGGTGAAGACCCGGAGGAAGTGCCAGAGCT
GCCGATACAACCTCTGCCTCAGGGCCGGAATGAGGCCGGAGAATGTCCTC
ACGCCCGACCAGAAAAGTGTCAGATTCAGGAAGAAGCGTCAGAAGGCGGC
TCAGCCTCCCAAGGAGCGACTCACCATCCTCGAGTGCAAGTCCCCGGAGC
GACCTCACCTCGAGGGTGCCTCCTACACTCGGGCCCTTGTGCCCAAAGTC
GAGCAGCCTGAACAGCAGCAATCACAACTGCAAACCAGTCTGGGCTTTGA
TCTCCCGGACATTGGCGACAATATCGAGGACCTCCTCTCCAACTTCAGTA
GTGGCGACTCGAACCAGGAGCCCCTGGTGAGCGACTTTGTCCAGCTACCC
CAACTCCAAATCGTCGAACCCACCCCTCAGTCTGACCTGCAGGACTTCCA
AGCCAATGTGTACGAAGACATCCCGGTGATCAGCCCTATCAACCCAATTG
GGATCCAGGAAACCAGCTCCTCCCTGGACTCCTCCGTGGATTGGTTCAAC
CATCAGATCGTGGAGCAAAAACAATTGGCGCACAACTACTTACTGGGCCT
CCTCAACCAATCTGGGATCGAGCACTAG

Synonyms

The feature 'ecdysone receptor a isoform' has the following synonyms


Synonym
Tk05279

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