neurogenic locus notch-like protein protein 1, snap_masked-scaffold474_size162001-processed-gene-0.17 (gene) Tigriopus kingsejongensis

Overview
Nameneurogenic locus notch-like protein protein 1
Unique Namesnap_masked-scaffold474_size162001-processed-gene-0.17
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of neurogenic locus notch-like protein protein 1 vs. L. salmonis genes
Match: EMLSAG00000006904 (supercontig:LSalAtl2s:LSalAtl2s391:104959:129512:1 gene:EMLSAG00000006904 transcript:EMLSAT00000006904 description:"maker-LSalAtl2s391-augustus-gene-1.14")

HSP 1 Score: 106.301 bits (264), Expect = 4.938e-23
Identity = 74/205 (36.10%), Postives = 114/205 (55.61%), Query Frame = 0 
Query:  367 VPTGFQKIDLPFME-HDQDVGHLPSVFIAPVGFKVPEGYKGHPLPYDPDLAKVNAEGTTLRPSGIHLVSRTTTL---PTLVDSPTERTIVTESESAAGSLIKNKIKLAKQRPSLSSLYRGKVQTDTLDNKDENKKKRRILTKIVRRPFKTVRNFFKAPSTK-----EPATEQEPVTT-----TITTTTTQEPITTPKAEEISYVN 557
            V +G  ++++PF++ H++D   LPSVF+AP+GF +P G+ GHPLPYDP L K   +   +R      VSR+  L        +  + T    + +   S + NKIKLA+QRPSL + YR K + +T   + + ++K+RILTKIVR+P    R +F + + K      P  EQ    T     +++TTT   P+T+   EE  + N
Sbjct:  892 VQSGQSQLNVPFIDVHNEDPSLLPSVFVAPLGFDIPHGFAGHPLPYDP-LVK---DDNYIRH---QYVSRSPILHTTTVTTTTIADTTTTAPATATTKSSLLNKIKLARQRPSLETFYRNKAK-NTESYEAKKRQKKRILTKIVRKPINFNRQYFSSQAAKFQHLANPNGEQTTTLTTVTFPSLSTTTISLPVTSANTEESLFRN 1088

HSP 2 Score: 92.0485 bits (227), Expect = 1.021e-18
Identity = 43/90 (47.78%), Postives = 62/90 (68.89%), Query Frame = 0 
Query: 1550 KQSLLAKYTNARKTHLLKDTILSKAVPATSPELGRIPVGSNPNVYKQWAGNSLSQSEFERQVLGVSTASEVSVKSMICVRGRCYNADDMT 1639
            K     K+++ R    +K+   + +V   S E  R P GS+P V+K W GNSLSQ+EFER +LGVSTA+EVSV+S IC+RG+C++A++ T
Sbjct: 2015 KSKFYEKFSHQR----VKNNFFN-SVNNISKEKPRYPKGSDPKVFKNWGGNSLSQAEFERSILGVSTATEVSVQSRICIRGKCFDANEDT 2099

HSP 3 Score: 63.1586 bits (152), Expect = 6.550e-10
Identity = 27/56 (48.21%), Postives = 42/56 (75.00%), Query Frame = 0 
Query:   11 LFLLWAASIALSSGDKAAWNIQLSDPNREGKFLNVPVFYGDWVPLGNAKSTIEAVA 66
            L++L  AS+A  +G++  WN+++S  NREG+F  +PV +GDWVPL  A+ TI++VA
Sbjct:    5 LYILGLASLA--AGNEEGWNLKVSQ-NREGRFYGLPVQFGDWVPLNQAQDTIKSVA 57

HSP 4 Score: 56.225 bits (134), Expect = 8.215e-8
Identity = 43/127 (33.86%), Postives = 59/127 (46.46%), Query Frame = 0 
Query:  783 SKYEG-GYGQRIRSRQRLAFWKNDRDQEQSETQLNYQ----------GTTEEPSKAPR--EYKQKFRPFFDQLYEKLTTDEDKAEEVSQRPLRRRFKGRRRSTTTPNPYTINAQIYEVDPNSGEILS 896
            S  EG GYGQR+R+R+   FW +   Q  S T                   + S   R   YK+++RPFFD LY+ L     +    S    R  +  +RR T++P   TI A+IYEV P S   +S
Sbjct: 1168 SNSEGTGYGQRLRARKXPTFWASKYQQRASTTITATTSTSTPKRITTAVQRDSSSTQRADSYKKRYRPFFDTLYDNLNDQPSQKPSTSYIRPRNIWSKKRRPTSSPFNPTIAAEIYEVHPKSRARIS 1294
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BLAST of neurogenic locus notch-like protein protein 1 vs. nr
Match: gi|1325265816|ref|XP_023337484.1| (uncharacterized protein LOC111708371 [Eurytemora affinis] >gi|1325265824|ref|XP_023337492.1| uncharacterized protein LOC111708371 [Eurytemora affinis])

HSP 1 Score: 157.532 bits (397), Expect = 1.143e-34
Identity = 159/531 (29.94%), Postives = 234/531 (44.07%), Query Frame = 0 
Query:   10 GLFLL-WAASIALSSGD--KAAWNIQLSDPNREGKFLNVPVFYGDWVPLGNAKSTIEAVAAQVEAGQSPVI---------GSGLSGELE-------------PSSVDLANERVDVYPVEHVDGPGNNPQSYRRPPRRLFQGPYRRPHRRPEGHRGHRRHRKIQTPGSSFVDQITSFFKPA-HQQHAHPQEPLNIKPAHQQHVHPQEPLNRPYPSNIQPADSYPSESFNVGTVYNGVQNVVRPKPGGGPLN----AVPSPSFNV----PQSQAKET-LATLNPVVKLVPAPDLSQDGPPIIELGGTR-ETVHGAPFVQHQQFSDHLSGFVPVDFEHITSGEKVHRHPHLDQAPKDFSVVVSGFNEQPNSDQLAEY----LKQGSQRDIGAYIAPHNQNVPTGFQKIDLPFMEHDQDVGHLPSVFIAPVGFKVPEGYKGHPLPYDPDLAKVNAEGTTLRPSGIHLVSRTTTLPTLVDSPTERTIVTESESAAGSLIKN-KIKLAKQRPSLSSLY-RGKVQTDTLDNKDENKKK 498
            GL LL  A ++A    D   +AW +Q SDP+R G+FLNV + Y DWVPL  +++ IE VA Q+  GQ+ V           S  SG+ +              + +D A ER DV  V+HV                               H G ++HR                F P  HQQ +  +   N  P  QQ        NR    N++P    P+++ N+   ++       P P   P      A P    +     PQS+  ++ L TLN  ++ +P+PDLS+ GPPIIEL     + V G PF +  +  DHL+GFV +DF+  TSGE     P  D+     S++V G     N D+  E     L    + D   ++   +++ P GF KID+PFM+     G LP VFIAP+G  +P+GYKG PL  +P   +   E   L  S             +   P  +    +  ++  + ++N + K  K+RPSLS  Y + K + +TL  K E  +K
Sbjct:    5 GLILLSLATALAQEQIDHQSSAWTLQHSDPSRGGRFLNVALDYKDWVPLEQSRALIERVAKQLSHGQTLVNPADARVDSNQSSDSGDFQFLNPNPPNSEPSPNARIDTAEERTDV--VQHV-----------------------------HFHHGTQQHR----------------FNPQFHQQQSDTRRQDNY-PRFQQQQFQGSRGNR----NLRPQ---PAQN-NINNFFSSFN----PLPSLNPFKFFEAAEPKKPISFQQQRPQSRPDQSYLETLN-AIQTIPSPDLSKFGPPIIELDSKDGQIVVGQPFNRGTE-KDHLAGFVSLDFDGFTSGE-----PE-DKTRNKLSLLVGG---NQNFDKDVESGLVNLLNSEKEDPPTFVQNSDKDAPAGFTKIDIPFMDPTDHTGVLPKVFIAPIGKPIPKGYKGKPLLSEPTGVQTTTETILLVESPYSTEKPLFRFQEIKSKPNTKIEEEKPTTSTQAPVRNFRFKTQKERPSLSRFYLKNKEKLETLSRKPEKVEK 464

HSP 2 Score: 90.8929 bits (224), Expect = 2.031e-14
Identity = 79/269 (29.37%), Postives = 129/269 (47.96%), Query Frame = 0 
Query: 1402 PGSRINHPKAIDTDSFNVPQVDDVNPPKKFLDDKLGY-VVKKRERLIQSWVNRQHKDKPRYGTAKTPLATTEYPDSVEASTTSPQHLLAPSTTSLTTLLALDESEEYESLQEEVDKAFFP-FAPT-----IPPKGKYSQEEESDPKESPKKHQLK----KQSLLAKYTNARKTHLL---KDT-------------------ILSKAVPATSPELGRIPVGSNPNVYKQWAGNSLSQSEFERQVLGVSTASEVSVKSMICVRGRCYNADD 1637
            PG +    + +   SF   Q+  +   +  +D+K    +VKKRE  I++WV+R      +Y   K P        S  +S  + Q         + T LA   SEE E+ +     AF P  +PT     +P   +++   +   ++   +  +     K S   KY+  +  + L   KDT                    L+  V    P+   +P+G+N +++K +AG+ LSQ++FER++LGVSTA+E+SVKSMICV+GRC+NAD+
Sbjct: 1408 PGVQSVDQEGVKVHSFGAEQIIPLRKSESLIDEKEKEGLVKKREEWIKNWVSR------KYNKPKFPRV------SFTSSGLNSQ---------VETTLAPVLSEEAETNKINSVPAFTPTISPTSDSNVLPKNSRFNVNFDVTVRDGSDEKLISGSEVKSSRFDKYSRKKVKNSLFHKKDTKSREEDQIEVDHEVKVDEAALNPLVAFFQPK--GVPLGANTDIFKNYAGDQLSQADFERKILGVSTATEISVKSMICVKGRCFNADE 1653
The following BLAST results are available for this feature:
BLAST of neurogenic locus notch-like protein protein 1 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000069044.938e-2336.10supercontig:LSalAtl2s:LSalAtl2s391:104959:129512:1... [more]
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BLAST of neurogenic locus notch-like protein protein 1 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of neurogenic locus notch-like protein protein 1 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 1
Match NameE-valueIdentityDescription
gi|1325265816|ref|XP_023337484.1|1.143e-3429.94uncharacterized protein LOC111708371 [Eurytemora a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold474_size162001supercontigscaffold474_size162001:774..5783 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold474_size162001-processed-gene-0.17-mRNA-1snap_masked-scaffold474_size162001-processed-gene-0.17-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold474_size162001:774..5783-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold474_size162001-processed-gene-0.17 ID=snap_masked-scaffold474_size162001-processed-gene-0.17|Name=neurogenic locus notch-like protein protein 1|organism=Tigriopus kingsejongensis|type=gene|length=5010bp|location=Sequence derived from alignment at scaffold474_size162001:774..5783- (Tigriopus kingsejongensis)
ATGCAAGTTTTCTTGTCCAGAGCACCGGGTCTCTTCCTCCTTTGGGCGGC
CAGCATAGCTCTAAGTTCCGGCGATAAAGCAGCATGGAACATCCAGCTGA
GCGATCCCAACCGAGAGGGCAAGTTCCTCAATGTCCCAGTCTTCTATGGA
GATTGGGTGCCACTTGGAAACGCCAAAAGCACCATCGAGGCCGTGGCAGC
TCAGGTCGAGGCCGGCCAGTCCCCCGTGATTGGAAGCGGTTTGTCCGGGG
AACTGGAGCCCTCGTCGGTTGATCTGGCCAACGAACGGGTGGACGTGTAT
CCTGTGGAACATGTGGATGGGCCAGGGAACAATCCCCAGTCCTATCGCCG
CCCCCCTAGGAGGCTCTTCCAAGGCCCTTACCGGCGACCTCATCGACGAC
CAGAAGGACATCGAGGACATCGACGTCATCGGAAGATTCAAACCCCGGGC
TCTAGCTTTGTGGACCAAATCACGTCCTTCTTCAAACCTGCCCATCAGCA
ACACGCTCATCCACAAGAACCCCTGAATATCAAACCAGCCCATCAACAGC
ACGTTCATCCACAAGAGCCCCTGAATCGTCCCTATCCCAGCAATATTCAG
CCCGCAGATTCCTACCCATCTGAGTCGTTCAACGTTGGCACAGTCTACAA
CGGTGTTCAAAATGTCGTGCGACCCAAGCCCGGAGGCGGTCCCCTCAATG
CTGTTCCCTCGCCCTCGTTTAACGTGCCCCAATCTCAGGCCAAGGAGACT
TTGGCTACCCTTAATCCCGTGGTCAAGTTGGTCCCTGCTCCTGATCTTTC
CCAGGTAAGTTTGCAGACCAGACCAATTTCGATCCAAAGCTAAGAAGTTG
TCATGCTCAATATTTTTTTCCCCTTCTCGCAGGACGGACCTCCTATCATT
GAATTGGGCGGCACTCGAGAAACGGTTCATGGAGCTCCATTTGTTCAGCA
TCAACAATTTAGCGATCATCTCTCCGGATTCGTTCCCGTGGACTTTGAGC
ACATCACCTCCGGGGAGAAGGTTCACCGACATCCGCATTTGGACCAAGCT
CCCAAAGACTTTTCTGTCGTGGTCAGCGGCTTCAACGAGCAACCCAATTC
CGACCAATTGGCTGAATACTTGAAGCAGGGATCGCAACGAGACATTGGGG
CCTACATTGCCCCCCACAATCAGAATGTGCCCACTGGTTTCCAGAAGATT
GACTTGCCGTTCATGGAACATGATCAAGATGTCGGGCACCTTCCCTCCGT
CTTTATTGCTCCGGTTGGATTCAAGGTTCCCGAGGGCTACAAGGGCCATC
CCCTGCCCTATGACCCGGACTTGGCCAAGGTCAATGCCGAGGGCACCACA
TTGAGACCCTCGGGCATCCATCTCGTCAGCCGCACCACCACCCTGCCAAC
TCTGGTGGACTCTCCCACTGAGAGAACCATTGTCACGGAATCTGAGTCGG
CGGCTGGAAGTTTGATCAAGAATAAGATCAAGTTGGCCAAACAAAGACCT
TCTCTCAGCTCTCTCTATCGAGGTAAAGTGCAAACCGACACTTTGGACAA
CAAAGATGAGAACAAGAAGAAGAGACGAATCCTCACCAAGATTGTGCGGC
GTCCGTTCAAGACGGTGAGAAACTTCTTCAAGGCACCCAGCACCAAGGAA
CCCGCTACCGAACAAGAACCCGTCACCACCACCATCACCACCACCACCAC
TCAAGAGCCCATCACCACGCCCAAGGCCGAGGAGATTTCCTACGTGAATC
CCTTCTTGACAGAACGAACCGAAGACTTTGCGAACACTGCCGAATCCTCG
ACCCTGCCCACGGTTCCAGTGACCACTTACAAACCATCTTTGAACCTTAT
CCTCGCCGCAACAACTTCCAAGCAACCGGAGCTGATATCCGAGGAGCAGT
TGTTCCAAGAGGAAGCTCCGGCAAATGCTGCAGATCAAATTAAGTATGAG
CCCGAAGAGGTGGTGACGAGTGGATACGAACCCACGGTGGTGCCCAAGGT
CGAGGTCTTTGAGCCCACCACGGCCCTTCCCTTAGAGTTGGAAGAAGACG
CGGAATCTGTTTTTGTTACCACCCAATTTGTGGCTACCGAAACCTCCACC
AAGCAATACGCGAACTATCCAATTGTGATCCCTACACCCAGATCATCTGA
AGCTCCCAAGGACTTGACCCAGCAATTCTTCGTCTCACCCACGACGGAAG
AAGCTACAACCACCCCCGAGGATAGAAGCCCTGCGTACGCTCCGACACCT
TTCAGTTTCGTCCGCCCATTGAGAAGGTTGGACACCTACAATCGGTTCAA
AAAGGGCACGCCCTCCACCACCACGACCACTGCCACGACCACGACCACCA
CCAAGACGACGACCAGCGAGGCCGCCGTTTTGGCTCCTCAGCGAGTGCTG
ATTCCGAACCAGAGCAAGTACACCAGCAAGTACGAGGGTGGCTACGGACA
GAGGATCCGATCGCGTCAGAGGCTGGCATTCTGGAAGAACGATCGGGATC
AGGAACAGTCTGAAACTCAGCTCAACTACCAGGGCACCACCGAAGAGCCC
AGCAAGGCTCCGAGGGAATACAAACAAAAGTTCCGACCCTTCTTCGACCA
GCTCTACGAAAAGTTGACCACTGACGAGGACAAGGCTGAGGAGGTCTCGC
AACGCCCTCTCCGAAGACGTTTCAAGGGCAGGCGACGAAGCACCACCACG
CCCAACCCTTACACCATCAATGCCCAGATCTATGAGGTTGATCCCAACTC
TGGCGAGATTCTCTCCGTGGAAACGGCCACAGAGTTGCCGGTTGAAGAAA
ATGGTACCGAAGTCGTGGCCGACTATGACGAGCTTTATGAGCCCACCACC
AACTATGACGGCACTCAGTTGAATCACATTGCTCCTCATTCCAATGACTA
CGAGTATTTGGAGGTGGCCAAGGACAGCACCGAAGCTCCCCTCCACGAGC
AATTCACGACTCCCGCTCCTTTGGAGTATCAGGAGTATCCCTTGATCCCC
GAAACTGCCATTGACCAGGAAGATCATGAGACGGCCGACAAACATTCCAC
GCCTCAAGTCCCAATCACTGAAACGGCTCCCACGAGTCCAGAACCTGTTC
AAGATTTCAACTCAGCCCCCACCACCCTGTTGAAGATTCCCAACCCGTAT
GTGTATCCGGAGGCTCCTTTGGATTATGATTATGTGGTCAATGACATTCT
CGACCGCGTGGACGTGGACGCTGATAATCTGGAGTACGTAGACACCCAAC
AGGTTGAGGATGCGTGGAGGAATGACGTAGATTTGTCTCCGGCTGAGGGG
TCCACGGTTCAAATCTACGAGGGCGAGCGATTGGATACCTACGACAAGGA
AGTTGCTCCATCCTTGGCCATAGCTGAACAACACGATGAACAGTACGAGC
ATCCCAGCAATCTGGTCAATGAGCACAGCCAACAACACGTGACCGCTCTC
GAGGGACAATTTGTACCATTCCAAGATAATCGCCAGGCATTCAAGGGATA
CTCCTACGTCGAGATCGAGCGAGATCCCAACGGTCAAGTGTTGTCTTCCG
AGACAGTTCCGGTGGAGGACATTGAGGCTGTGGAAGAAGCACTGGAGGAG
ATCTACCAAGATCCTAATGTGGATTCGCTCTTGCTGCCCGTGGGAGTGGA
GATCGAAGTCGCCAATACCGGCAGCTCTGAGCCCCTTCGAACCATCGCTC
TGGAAAATATTGAAATCACCGAATTTCCCAGTCAATCCAAGGAAAGGCTA
ATCGAAGAGACCGCCATGGAGATTGCCGAGGAGGGGCTTGTCGTTCAAGA
ACACCAACCTCCGACAGTCCAGCCAGTTCCCGTAAGCACCGAGGAGGAGG
AGGAGGATATCTTGGCGGAGACCACAGTTGTTCCCCCACTTGTCTCCACT
CAAACCTACCTGGAGGACATTGAGAGCACTGAAAGTAACATTGACAGCGA
CTACGTCGAGGCCATCGATGATCTCGATTCACCAACGACGTTCCAGCCCG
AGGCAAACACGGATGCCATCCCCACCGAAGCCACTTCGTCAGGCGACCAG
GGTGCCTTCAACAATTTCAGTTTGGGAGGCATTTTCGACTACTTCCTGCC
CCAGTCAACCCAGAGGCCCGAACATCTTGTCATCAACACCACGGAGGCCA
CTCCCGAGGTCACTGAAGAATCCACCTTGGAACTTGGAACCGAGAGCGAG
CTTGAGGTATCGACTCTACCCAACCACCTCTTGGCCATTGACACCGAATC
GGTCGGAGAAGAAGACACTTTGTTGGCTTATCCTGGTTCTCGCATCAATC
ACCCCAAGGCCATCGACACAGACTCCTTCAACGTTCCCCAAGTGGATGAT
GTAAATCCACCCAAAAAGTTCCTGGACGACAAACTGGGTTACGTGGTGAA
GAAGCGCGAGCGACTAATCCAGAGTTGGGTCAATCGACAACACAAGGACA
AGCCCAGATACGGCACGGCCAAGACCCCACTGGCCACAACGGAGTATCCG
GACTCTGTCGAGGCGTCCACCACCTCACCTCAGCATTTGCTGGCTCCCTC
GACCACATCACTCACTACCTTGCTCGCTCTGGACGAATCCGAGGAGTACG
AGTCCCTCCAGGAGGAGGTGGACAAGGCCTTCTTCCCCTTCGCTCCCACC
ATCCCGCCCAAGGGGAAGTACTCCCAGGAGGAAGAGTCTGACCCAAAGGA
GTCGCCCAAGAAGCATCAGCTCAAGAAGCAGTCGTTGCTGGCCAAGTACA
CCAATGCCAGAAAGACTCACCTGCTCAAAGACACCATCTTGTCAAAGGCT
GTGCCGGCCACGTCCCCCGAGCTGGGCCGGATACCCGTCGGGAGTAACCC
CAACGTGTACAAGCAATGGGCGGGCAATTCGCTGAGTCAATCCGAGTTCG
AGAGGCAAGTCCTGGGCGTGTCCACGGCCTCCGAAGTGTCGGTCAAGTCC
ATGATCTGTGTGCGTGGACGGTGTTACAACGCAGATGACATGACGGATAT
CATCAGCTAA
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Synonyms
The feature 'neurogenic locus notch-like protein protein 1' has the following synonyms
Synonym
Tk10291
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