tar dna-binding protein 43-like isoform x2, snap_masked-scaffold714_size108203-processed-gene-0.5 (gene) Tigriopus kingsejongensis

Overview


Name	tar dna-binding protein 43-like isoform x2
Unique Name	snap_masked-scaffold714_size108203-processed-gene-0.5
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of tar dna-binding protein 43-like isoform x2 vs. L. salmonis genes
Match: EMLSAG00000012034 (supercontig:LSalAtl2s:LSalAtl2s858:196241:197383:1 gene:EMLSAG00000012034 transcript:EMLSAT00000012034 description:"augustus_masked-LSalAtl2s858-processed-gene-2.3")

HSP 1 Score: 244.973 bits (624), Expect = 6.762e-79
Identity = 138/336 (41.07%), Postives = 187/336 (55.65%), Query Frame = 0

Query:    1 MAAWVNIVDMDADDEPMEVQTEPDGTLLLTTITTQFPGTIGLKFKNPETGGFRGIRCKDNVLYPPNEDGWDSITFICTKP--------------KVASKSDEPPTKRAKVDEASVDS---DKGDSTN-----------------DLIVLGLPFSTTEAELKEFFEKFGPLTLASVK-KNNSGSSKGFGFIRFETMEAQKQSMLTRHMMSGRWVDVKVPESLEKKGAVNEGIYKVFVGRIDDTLTKEDLSEHFSQFGKVTDIFWPRPMRGFAFVSFLESKVAQSLLNKDHLIKGVSVHIGLPDSKKRPSDSFGGGGGGGGGPPHADKWGGNRGDPAP 301
            M+ WV +V  + D EP+E+ TE D T+LLT++T QFPG  GLKF+NPET G RG+RC DN LYPP EDGW +IT+IC  P              ++   S+   T+ A +   S +    D   S N                 DLIVLGL + T E +++++FE+FG L L  +K K  +  SKGF FIRF     Q +  LTRH ++ RW DVK+P+S E K +      K+FVGRI   +  +D+ +HF  FG V D++ P+P R F FV+F ES+VAQSL  K+H +KGV++ I    SK + S+   G    G  PPH      N G   P
Sbjct:    1 MSEWVAVVQEEGD-EPIEIPTEIDSTILLTSLTAQFPGVTGLKFRNPETNGLRGVRCLDNQLYPPLEDGWSNITYICVHPRYHPIKVSHNGSIQRIHEDSNTQATQDAALKRKSENDGGIDGMSSKNIKFEDMEEGGGNSPKPCDLIVLGLHWQTAEPDIRKYFEQFGELALVQLKTKMGTNQSKGFAFIRFVDPSIQFKVTLTRHWINDRWCDVKIPDSQELKRSKEMNSCKIFVGRITQNMDGDDIRKHFETFGAVKDVYIPKPFRSFCFVTFNESRVAQSLWGKEHTLKGVTICIASAHSKLKESEM--GRTHRGAPPPHPRAMTTNGGGGTP 333

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BLAST of tar dna-binding protein 43-like isoform x2 vs. L. salmonis genes
Match: EMLSAG00000008061 (supercontig:LSalAtl2s:LSalAtl2s47:228294:229145:-1 gene:EMLSAG00000008061 transcript:EMLSAT00000008061 description:"augustus_masked-LSalAtl2s47-processed-gene-2.0")

HSP 1 Score: 75.485 bits (184), Expect = 7.671e-16
Identity = 51/177 (28.81%), Postives = 97/177 (54.80%), Query Frame = 0

Query:   94 AKVDEASVDSDKGDSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKKN-NSGSSKGFGFIRFETMEAQKQSMLTRHMMSGRWVDVKVPESLEKKGAVNEGIYKVFVGRIDDTLTKEDLSEHFSQFGKVTDIFWP-----RPMRGFAFVSFLESKVAQSLLNKDHL-IKGVSVHI 263
            A+V + SV++   +    L V GLP    + ++KE FE FG +   ++K +  +G S+GF F+ F+++E  ++++   H +  + V VK  ++  K+G       KV+VG++   ++ ED+  HFSQ+G V ++  P        + F F++F + + A+ LL +  + +KG  + I
Sbjct:    8 AEVMDTSVEATNDEDDRKLFVGGLPQDAKDCDIKEHFEGFGEIESINIKTDPQTGRSRGFAFVVFKSLEGLEKAVSAEHTVKSKKVAVKKAQA--KQG-------KVYVGKLKPEISDEDIKTHFSQYGPVANVEQPFDKTKNERKNFCFITFEKEEPAKKLLKEGTVTLKGAELEI 175

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BLAST of tar dna-binding protein 43-like isoform x2 vs. L. salmonis genes
Match: EMLSAG00000012985 (supercontig:LSalAtl2s:LSalAtl2s98:287705:288759:1 gene:EMLSAG00000012985 transcript:EMLSAT00000012985 description:"maker-LSalAtl2s98-snap-gene-3.11")

HSP 1 Score: 73.9442 bits (180), Expect = 1.918e-15
Identity = 43/117 (36.75%), Postives = 69/117 (58.97%), Query Frame = 0

Query:  112 LIVLGLPFSTTEAELKEFFEKFGPLTLASVKKNN-SGSSKGFGFIRFETMEAQKQSMLTRHMMSGRWVDVKVPESLEKKGAVNEGIYKVFVGR-IDDTLTKEDLSEHFSQFGKVTDI 226
            L V GLP   +E +LKE+FE +G +T   +K +  +G S+GF F+ F T E+ +  +   H++ G+ V  K       K    +G  KV+VG+ +D ++T+ED+  HFSQ+G V +I
Sbjct:   19 LFVGGLPQEASENDLKEYFEAYGSVTSTVLKMDQMTGRSRGFAFVVFATPESLESVLEQEHVVKGKKVACK-------KATAKQG--KVYVGKFLDGSITEEDIKSHFSQYGTVVEI 126

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BLAST of tar dna-binding protein 43-like isoform x2 vs. L. salmonis genes
Match: EMLSAG00000006441 (supercontig:LSalAtl2s:LSalAtl2s351:658541:663148:1 gene:EMLSAG00000006441 transcript:EMLSAT00000006441 description:"maker-LSalAtl2s351-snap-gene-6.33")

HSP 1 Score: 68.9366 bits (167), Expect = 2.485e-13
Identity = 56/165 (33.94%), Postives = 84/165 (50.91%), Query Frame = 0

Query:   86 SDEPPTKRAKVDEASVDSDKGDSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKKN-NSGSSKGFGFIRFETMEAQKQSMLTR--HMMSGRWVDVKV--PESLEKKGAVNEGIYKVFVGRIDDTLTKEDLSEHFSQFGKVTDIFW-----PRPMRGFAFVSF 240
            ++ PP K+     A  D ++G     L V GL + TT+  L  +F  FG +    V KN  SG S+GFGF+ F    A   ++L+   H + GR +D K   P S++K    N    KVF+G +   LT+ DL   FS++G+V ++        +  RGF F+SF
Sbjct:   25 ANRPPRKQ----RAHEDEEQGK----LFVGGLSWDTTQETLLRYFGGFGEVIDCVVMKNAESGRSRGFGFVTFSD-PANIDAVLSSCPHTLDGRTIDPKACNPRSMQKPKKTNY-FPKVFLGGLPSNLTETDLRNFFSRYGEVCEVIIMYDQEKKKSRGFGFLSF 179

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BLAST of tar dna-binding protein 43-like isoform x2 vs. L. salmonis genes
Match: EMLSAG00000007356 (supercontig:LSalAtl2s:LSalAtl2s418:127995:128853:-1 gene:EMLSAG00000007356 transcript:EMLSAT00000007356 description:"snap_masked-LSalAtl2s418-processed-gene-1.5")

HSP 1 Score: 63.1586 bits (152), Expect = 4.897e-12
Identity = 46/154 (29.87%), Postives = 83/154 (53.90%), Query Frame = 0

Query:  104 DKGDSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKKNN-SGSSKGFGFIRFETMEAQKQSMLTRHMMSGRWVDVKVPESLEKKGAVNEGIYKVFVGRID-DTLTKEDLSEHFSQFGKVTDIFWPR-----PMRGFAFVSFLESKVAQSLL 250
            D  D    + V GL + T E +LKE+F +FG +  A++K N+ +G S+ F F+ F+  E+  + +   H ++ + VDVK  ++  K G       KVF G +  ++ ++E+L E+FS FG + +   P+       + F FV+F + +  + +L
Sbjct:    5 DLSDEDRKIFVGGLCWETGEVQLKEYFSQFGEIESANLKLNSVTGKSRCFAFVLFKDTESVSKVLQNTHAINSKKVDVKRAKA--KPG-------KVFFGGLHPESPSEEELKEYFSHFGNILEFEIPQDKIKNERKSFGFVTFEKEESMKKVL 149

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BLAST of tar dna-binding protein 43-like isoform x2 vs. L. salmonis genes
Match: EMLSAG00000011736 (supercontig:LSalAtl2s:LSalAtl2s816:217425:223501:1 gene:EMLSAG00000011736 transcript:EMLSAT00000011736 description:"snap_masked-LSalAtl2s816-processed-gene-2.29")

HSP 1 Score: 64.6994 bits (156), Expect = 1.028e-11
Identity = 59/202 (29.21%), Postives = 94/202 (46.53%), Query Frame = 0

Query:  104 DKGDSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKKNNSGSSKGFGFIRFETMEAQKQSMLT-RHMMSGRWVDVKVPESLEK----KGAVNEGIYKVFVGRIDDTLTKEDLSEHFSQFGKVTDI----FWPRPMRGFAFVSFL-ESKVAQSLLNKD------HLIKGVSVHIGLPDSKKR---PSDSFGGGGGGGGGP 286
            DK +S   + +  L F  TE E++E  E  GP+    + KN +G S+GF ++ F   E+  +S+L    ++  R V + + +  +K    K A      K+FV  ++ + +KEDL E FS +GKV ++    F     +G A+V F  ES    +++  D      H I   +V    P  KK+   P    GGG      P
Sbjct:  704 DKEESDRTIFLSNLSFEVTEEEIREMMESSGPVKEVRLAKNFNGKSRGFAYVDFVYSESVSKSILRDNELLKERPVYISMCDPNKKGHQFKYATVLEKNKLFVRGLNFSTSKEDLIELFSTYGKVKEVRVVTFRNGKSKGIAYVDFENESDATNAIMKIDGMNFMGHFI---NVAFSNPPEKKKDMEPVSCLGGGVLKKQAP 902

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BLAST of tar dna-binding protein 43-like isoform x2 vs. L. salmonis genes
Match: EMLSAG00000005517 (supercontig:LSalAtl2s:LSalAtl2s297:281209:289703:-1 gene:EMLSAG00000005517 transcript:EMLSAT00000005517 description:"maker-LSalAtl2s297-augustus-gene-3.62")

HSP 1 Score: 62.3882 bits (150), Expect = 7.344e-11
Identity = 52/193 (26.94%), Postives = 88/193 (45.60%), Query Frame = 0

Query:   92 KRAKVDEASVDSDKGDSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKKN-NSGSSKGFGFIRFETMEAQKQSM-LTRHMMSGRWVDVKVPES----------LEKKGAVNEGI---------YKVFVGRIDDTLTKEDLSEHFSQFGKVTDI-FWPRPM----RGFAFVSFLESKVAQSLL-NKDHLIK 257
            K    +E  V S++     DL V  L   TTE +L+ +F  FG LT   +  +  +G +K FGF+ FE+ +   + +   RH + G+ ++++              ++ K   NE +          K+FVG +      +DL  +FS FG V ++   P  +    RGF FV+F     A+ +  ++ H IK
Sbjct:    4 KEEITEELKVFSNEESEVMDLFVGNLSLYTTEFKLQTYFSTFGTLTSVKICTHPENGKNKRFGFLNFESADVISKILNYPRHEIDGKILEIRYASKNMLNKRKNSVVKAKSPENEEVNPRIETSNKAKIFVGGVSQNAKVDDLRSYFSSFGPVQNVTLLPDHITGRHRGFGFVTFENESTAEVVCSSRYHTIK 196

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BLAST of tar dna-binding protein 43-like isoform x2 vs. L. salmonis genes
Match: EMLSAG00000007863 (supercontig:LSalAtl2s:LSalAtl2s460:94042:141135:-1 gene:EMLSAG00000007863 transcript:EMLSAT00000007863 description:"maker-LSalAtl2s460-augustus-gene-1.7")

HSP 1 Score: 61.6178 bits (148), Expect = 8.176e-11
Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 0

Query:  112 LIVLGLPFSTTEAELKEFFEKFGPLTLASVKKNNSGSSKGFGFIRFETMEAQKQSM-LTRHMMSGRWVDVK--VPESLEKKGAVNEGIYKVFVGRIDDTLTKEDLSEHFSQFGKVTDIFW-----PRPMRGFAFVSF 240
            L V GL + TT  +L+E+F +FG +T           S+GFGFI F T +A  + + +  H + G+ +D K   P+S  K         K+FVG +    + E++   F+QFGKV +         +  RGF FV+F
Sbjct:   53 LFVGGLSWQTTPDKLREYFGQFGSVT---------DRSRGFGFITFSTPDAVDRVLAVVTHTLDGKKIDPKHATPKSKSKANKTK----KIFVGGVSQDTSAEEVKAXFNQFGKVEEAXMLMDQQTKRHRGFGFVTF 176

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BLAST of tar dna-binding protein 43-like isoform x2 vs. L. salmonis genes
Match: EMLSAG00000000160 (supercontig:LSalAtl2s:LSalAtl2s1025:101799:103083:1 gene:EMLSAG00000000160 transcript:EMLSAT00000000160 description:"maker-LSalAtl2s1025-augustus-gene-0.45")

HSP 1 Score: 60.077 bits (144), Expect = 2.110e-10
Identity = 46/164 (28.05%), Postives = 75/164 (45.73%), Query Frame = 0

Query:  112 LIVLGLPFSTTEAELKEFFEKFGPLT-LASVKKNNSGSSKGFGFIRFETMEAQKQSMLTR-HMMSGRWVDVKVPESLEKKGAVNEG-----IYKVFVGRIDDTLTKEDLSEHFSQFGKVTDIFW-----PRPMRGFAFVSFLES-KVAQSLLNKDHLIKGVSVH 262
            L + GL +STTE  LK++FEK+G L  +  +   ++  S+GFGF+ F  ++        R H +    ++ K     E+  + +EG     + K+F+G +D +   E L   F QFG++ D         +  RGF F  +     V      + H I G  V 
Sbjct:   17 LFLGGLNYSTTEDGLKKYFEKYGELVDIVVMXFPDTRRSRGFGFVTFAQVDQAXACFEERPHTIDSTTIETKRATPKEEMESADEGSQPEVMRKLFIGGLDYSTDDETLKAFFEQFGELVDCVVMKFRDTKRSRGFGFXXYAHXDXVDXXXAARPHTIDGAKVE 180

HSP 2 Score: 53.5286 bits (127), Expect = 3.219e-8
Identity = 66/222 (29.73%), Postives = 96/222 (43.24%), Query Frame = 0

Query:   91 TKRAKVDEASVDSDKG---DSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKK-NNSGSSKGFGFIRFETMEAQKQSMLTR-HMMSGRWVDVK--VPESLEKKGAVNEGIYKVFVGRIDDTLTKEDLSEHFSQFGKVTDIFWPRPMRGFAFVSFLE-SKVAQSLLNKDHLIKG--VSVHIGLPDSKKRPSDSFGGGGGGGGGPPHADKWGGNRGDPAPW 302
            TKRA   E    +D+G   +    L + GL +ST +  LK FFE+FG L    V K  ++  S+GFGF  +   +        R H + G  V+ K   P     K   +  + K+F+G + D +  EDL ++FS+             RGF FV F +   V + +L   H +    + V   +  S        GGG       P     GG+RG PAPW
Sbjct:   87 TKRATPKEEMESADEGSQPEVMRKLFIGGLDYSTDDETLKAFFEQFGELVDCVVMKFRDTKRSRGFGFXXYAHXDXVDXXXAARPHTIDGAKVETKRATPREDVAKPESSSSVKKIFIGGLKDGIEDEDLKDYFSK------------KRGFGFVEFDDYDPVDKIVLIGKHYLNDWRIDVKKAISRSDLNGGGGGGGGRREPDRGPRGRGPGGSRGQPAPW 296

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BLAST of tar dna-binding protein 43-like isoform x2 vs. L. salmonis genes
Match: EMLSAG00000004804 (supercontig:LSalAtl2s:LSalAtl2s253:647394:650584:1 gene:EMLSAG00000004804 transcript:EMLSAT00000004804 description:"maker-LSalAtl2s253-augustus-gene-6.16")

HSP 1 Score: 60.4622 bits (145), Expect = 2.846e-10
Identity = 62/211 (29.38%), Postives = 100/211 (47.39%), Query Frame = 0

Query:   71 DSITFICTKPK-VASKSDEPP---TKRAKVDEASVDSDKGDSTND------LIVLGLPFSTTEAELKEFFEKFGPL---TLASVKKNNSG-SSKGFGFIRFETME-AQKQSMLTRH-MMSGRWVDVKVPESLEK-------KGAVNEGIY---KVFVGRIDDTLTKEDLSEHFSQFGKVTDIFWPRPM----RGFAFVSFLESKVAQSLLN 251
            D+I  +   P+ V +  D PP    + +  D A++D +K D   +      L V  L FST E+ LK  FEK G +   T+A  K N  G  S GFGF+RF+    A K   L +H M+    +++K  E + +       + + N+ I    K+ V  I     K+++ + F  FG++  +  P+ +    RGFAFV +   + A+   N
Sbjct:  571 DTIFLLEFAPEGVLNPDDRPPPSKMEESSQDSAAMDEEKVDENEEPEPETTLFVKNLNFSTNESSLKRHFEKMGAIHEVTIAKKKDNVEGLLSMGFGFVRFKKKAIADKALKLFQHKMLDNHSLELKKSERVSEAQDPRHARKSTNKDIKESSKILVRNIPFEAHKKEIEDLFKTFGQIKFVRLPKKVTGSHRGFAFVEYHTVEEAKKAFN 781

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BLAST of tar dna-binding protein 43-like isoform x2 vs. SwissProt
Match: gi|20140568|sp|Q13148.1|TADBP_HUMAN (RecName: Full=TAR DNA-binding protein 43; Short=TDP-43)

HSP 1 Score: 228.409 bits (581), Expect = 1.190e-70
Identity = 120/274 (43.80%), Postives = 176/274 (64.23%), Query Frame = 0

Query:    1 MAAWVNIVDMDADDEPMEVQTEPDGTLLLTTITTQFPGTIGLKFKNPETGGFRGIRCKDNVLYPPNEDGWDSITFICTKPK-VASKSDEPPTKRA-KVDEASVDSDKGDSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKKN-NSGSSKGFGFIRFETMEAQKQSMLTRHMMSGRWVDVKVPESLEKKGAVNEGIY--KVFVGRIDDTLTKEDLSEHFSQFGKVTDIFWPRPMRGFAFVSFLESKVAQSLLNKDHLIKGVSVHIGLPDSK 269
            M+ ++ + + D +DEP+E+ +E DGT+LL+T+T QFPG  GL+++NP +   RG+R  + +L+ P+  GW ++ ++   PK    K DE     A KV  A         T+DLIVLGLP+ TTE +LKE+F  FG + +  VKK+  +G SKGFGF+RF   E Q + M  RHM+ GRW D K+P S   K + +E +   KVFVGR  + +T+++L E FSQ+G V D+F P+P R FAFV+F + ++AQSL  +D +IKG+SVHI   + K
Sbjct:    1 MSEYIRVTE-DENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDA-GWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAV------QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS---KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPK 263

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BLAST of tar dna-binding protein 43-like isoform x2 vs. SwissProt
Match: gi|75070499|sp|Q5R5W2.1|TADBP_PONAB (RecName: Full=TAR DNA-binding protein 43; Short=TDP-43)

HSP 1 Score: 228.024 bits (580), Expect = 2.036e-70
Identity = 120/274 (43.80%), Postives = 175/274 (63.87%), Query Frame = 0

Query:    1 MAAWVNIVDMDADDEPMEVQTEPDGTLLLTTITTQFPGTIGLKFKNPETGGFRGIRCKDNVLYPPNEDGWDSITFICTKPK-VASKSDEPPTKRA-KVDEASVDSDKGDSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKKN-NSGSSKGFGFIRFETMEAQKQSMLTRHMMSGRWVDVKVPESLEKKGAVNEGIY--KVFVGRIDDTLTKEDLSEHFSQFGKVTDIFWPRPMRGFAFVSFLESKVAQSLLNKDHLIKGVSVHIGLPDSK 269
            M+ ++ + + D  DEP+E+ +E DGT+LL+T+T QFPG  GL+++NP +   RG+R  + +L+ P+  GW ++ ++   PK    K DE     A KV  A         T+DLIVLGLP+ TTE +LKE+F  FG + +  VKK+  +G SKGFGF+RF   E Q + M  RHM+ GRW D K+P S   K + +E +   KVFVGR  + +T+++L E FSQ+G V D+F P+P R FAFV+F + ++AQSL  +D +IKG+SVHI   + K
Sbjct:    1 MSEYIRVTE-DESDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDA-GWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAV------QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS---KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPK 263

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BLAST of tar dna-binding protein 43-like isoform x2 vs. SwissProt
Match: gi|123915948|sp|Q28F51.1|TADBP_XENTR (RecName: Full=TAR DNA-binding protein 43; Short=TDP-43)

HSP 1 Score: 226.868 bits (577), Expect = 4.293e-70
Identity = 118/275 (42.91%), Postives = 170/275 (61.82%), Query Frame = 0

Query:    8 VDMDADDEPMEVQTEPDGTLLLTTITTQFPGTIGLKFKNPETGGFRGIRCKDNVLYPPNEDGWDSITFICTKPK-VASKSDEPPTKRAKVDEASVDSDKGDSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKKN-NSGSSKGFGFIRFETMEAQKQSMLTRHMMSGRWVDVKVPESLEKKGAVNEGIYKVFVGRIDDTLTKEDLSEHFSQFGKVTDIFWPRPMRGFAFVSFLESKVAQSLLNKDHLIKGVSVHIGLPDSKKRPSDSFGGGG 280
            V  D ++EPME+ +E DGT+LL+T+T QFPG  GL+++NP     RG+R  + +L+ P E+GW ++ ++   PK    K DE     A   + +V       T+DLIVLGLP+ TTE +LK++F  FG + +  VKK+  +G SKGFGF+RF   E Q + M  RHM+ GRW D K+P S      +     KVFVGR  + ++ E+L + FSQ+G+V D+F P+P R FAFV+F + +VAQSL  +D +IKGVSVH+   + K   +     GG
Sbjct:    8 VAEDENEEPMEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVNQCMRGVRLVEGILHAP-ENGWGNLVYVVNYPKDNKRKMDETDASSAVKIKRAVTK-----TSDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQRHMIDGRWCDCKLPNSKSPDEPMRS--RKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGVSVHVSTAEPKHNNNRQLERGG 274

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BLAST of tar dna-binding protein 43-like isoform x2 vs. SwissProt
Match: gi|82233907|sp|Q5ZLN5.1|TADBP_CHICK (RecName: Full=TAR DNA-binding protein 43; Short=TDP-43)

HSP 1 Score: 223.787 bits (569), Expect = 7.329e-69
Identity = 119/274 (43.43%), Postives = 175/274 (63.87%), Query Frame = 0

Query:    1 MAAWVNIVDMDADDEPMEVQTEPDGTLLLTTITTQFPGTIGLKFKNPETGGFRGIRCKDNVLYPPNEDGWDSITFICTKPK-VASKSDEPPTKRA-KVDEASVDSDKGDSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKKN-NSGSSKGFGFIRFETMEAQKQSMLTRHMMSGRWVDVKVPESLEKKGAVNEGIY--KVFVGRIDDTLTKEDLSEHFSQFGKVTDIFWPRPMRGFAFVSFLESKVAQSLLNKDHLIKGVSVHIGLPDSK 269
            M+ ++ + + D +DEP+E+ +E DGT+LL+T+T QFPG  GL+++NP +    G+R  + +L+ P E GW ++ ++   PK    K DE     A KV  A         T+DLIVLGLP+ TTE +LKE+F  FG + +  VKK+  +G SKGFGF+RF   E Q + M  RHM+ GRW D K+P S   K + +E +   KVFVGR  + +T ++L + F+Q+G+V D+F P+P R FAFV+F + +VAQSL  +D +IKG+SVHI   + K
Sbjct:    1 MSEYIRVTE-DENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMWGVRLVEGILHAP-EAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAV------QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDGRWCDCKLPNS---KQSPDEPLRSRKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGISVHISNAEPK 263

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BLAST of tar dna-binding protein 43-like isoform x2 vs. SwissProt
Match: gi|20140642|sp|Q921F2.1|TADBP_MOUSE (RecName: Full=TAR DNA-binding protein 43; Short=TDP-43)

HSP 1 Score: 217.624 bits (553), Expect = 1.732e-66
Identity = 126/300 (42.00%), Postives = 182/300 (60.67%), Query Frame = 0

Query:    1 MAAWVNIVDMDADDEPMEVQTEPDGTLLLTTITTQFPGTIGLKFKNPETGGFRGIRCKDNVLYPPNEDGWDSITFICTKPK-VASKSDEPPTKRA-KVDEASVDSDKGDSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKKN-NSGSSKGFGFIRFETMEAQKQSMLTRHMMSGRWVDVKVPESLEKKGAVNEGIY--KVFVGRIDDTLTKEDLSEHFSQFGKVTDIFWPRPMRGFAFVSFLESKVAQSLLNKDHLIKGVSVHIGLPDSKKRPSDSFGGGGGGGGGPPHADKWGGN 295
            M+ ++ + + D +DEP+E+ +E DGT+LL+T+T QFPG  GL+++NP +   RG+R  + +L+ P+  GW ++ ++   PK    K DE     A KV  A         T+DLIVLGLP+ TTE +LK++F  FG + +  VKK+  +G SKGFGF+RF   E Q + M  RHM+ GRW D K+P S   K + +E +   KVFVGR  + +T E+L + F Q+G+V D+F P+P R FAFV+F + KVAQSL  +D +IKG+SVHI   + K   +      G  GG P      GG 
Sbjct:    1 MSEYIRVTE-DENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDA-GWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAV------QKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS---KQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGF 289

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BLAST of tar dna-binding protein 43-like isoform x2 vs. SwissProt
Match: gi|857338755|sp|D0VWM8.1|TADBP_CAEEL (RecName: Full=Tar DNA-binding protein homolog 1)

HSP 1 Score: 150.984 bits (380), Expect = 6.107e-41
Identity = 100/307 (32.57%), Postives = 160/307 (52.12%), Query Frame = 0

Query:   14 DEPMEVQTEPDGTLLLTTITTQFPGTIGLKFKNPETGGFRGIRCKDN---VLYPPNEDGWDSITFICT------KPKVASKSDEPPTKRAKVDEASVDS---------------DKGDSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKKNNSGSSKGFGFIRFETM-EAQKQSMLTRHMMSGRWVDVKVPE--SLEKKGAVNEGIYKVFVGRIDDTLTKEDLSEHFSQFGK-------VTDIFWPRPMRGFAFVSFLESKVAQSLLNKDHL-IKGVSVHIGLPDSKKRPSDSFGGGGGGGGG 285
            DEP+E+ T  DG +L+TT+   FPG  GLK+KNP+TG  R ++   +   ++ P   DGW++ TF         + +  S +D    KR KV  +                   ++     DLIVLG+ F TT+   +++FE  G +    +K+ + G+SKGFGF+R  ++ E  K   + +HM+ GR  DVKVP+  SL+ K      I ++FVGR+ D + +  L + F    K       VTD+F P+P RGFAFV+   ++ A+ +++K  L + G+SV + +   ++  + S G   G   G
Sbjct:   56 DEPIELPTV-DGVVLMTTLQASFPGATGLKYKNPKTGANRAVQVDPSGLKLIAP--ADGWENKTFFVIVAPQSERVRALSSADATSAKRRKVGSSDDSDSDDGRDGRSGRKRAVERDSQPVDLIVLGVDFKTTDECFQKYFEDIGTVVFCEIKRKSDGNSKGFGFVRMSSVGEQNKVLAIPQHMIDGRRCDVKVPDGRSLQDKQG-RPSISRIFVGRLTDKVDEHQLRKVFGDEAKSYIETAVVTDVFIPKPFRGFAFVTLSSAEAAERIVSKGSLTVNGLSVGLSIAQPREENNQSVGPDYGLPAG 358

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BLAST of tar dna-binding protein 43-like isoform x2 vs. SwissProt
Match: gi|76803817|sp|P48809.2|RB27C_DROME (RecName: Full=Heterogeneous nuclear ribonucleoprotein 27C; Short=Hrb27-C; AltName: Full=HRP48.1; AltName: Full=hnRNP 48)

HSP 1 Score: 84.3445 bits (207), Expect = 6.166e-17
Identity = 63/184 (34.24%), Postives = 92/184 (50.00%), Query Frame = 0

Query:  107 DSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKKNN-SGSSKGFGFIRFETMEAQKQSMLT-RHMMSGRWVDVKV--PESLEK--KGAVNEGIYKVFVGRIDDTLTKEDLSEHFSQFGKVTDIFW-----PRPMRGFAFVSFLESKVAQSLLNKDHL-IKGVSVHIGLPDSKKRPSDSFGG 278
            D    L V GL + TT+  L  +F +FG +    V KNN SG S+GFGF+ F         +    H + GR +D K   P +L+K  KG    G YKVF+G +   +T+ DL   F+++GKVT++        +  RGF F+SF E    + + N+ ++ + G  V I     K  P D  GG
Sbjct:    4 DERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTIDPKPCNPRTLQKPKKG----GGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEI----KKAEPRDGSGG 179

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BLAST of tar dna-binding protein 43-like isoform x2 vs. SwissProt
Match: gi|729000|sp|Q99020.1|ROAA_MOUSE (RecName: Full=Heterogeneous nuclear ribonucleoprotein A/B; Short=hnRNP A/B; AltName: Full=CArG-binding factor-A; Short=CBF-A)

HSP 1 Score: 81.2629 bits (199), Expect = 2.036e-16
Identity = 51/167 (30.54%), Postives = 92/167 (55.09%), Query Frame = 0

Query:  112 LIVLGLPFSTTEAELKEFFEKFGPLTLASVKKN-NSGSSKGFGFIRFETMEAQKQSMLTR-HMMSGRWVDVKVPESLEKKGAVNEGIYKVFVGRIDDTLTKEDLSEHFSQFGKVTDIFWP-----RPMRGFAFVSFLESKVAQSLLNKD-HLIKGVSVHIGLPDSKK 270
            + V GL + T++ +LK++F KFG +   ++K + N+G S+GFGFI F+   + ++ +  + H + GR +D K   +++K     + + K+FVG ++   T+E + E+F QFG++  I  P        RGF F++F E    + +L K  H + G    I +   K+
Sbjct:   77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKK-----DPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKE 238

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BLAST of tar dna-binding protein 43-like isoform x2 vs. SwissProt
Match: gi|1710623|sp|P51989.1|RO21_XENLA (RecName: Full=Heterogeneous nuclear ribonucleoprotein A2 homolog 1; AltName: Full=hnRNP A2(A))

HSP 1 Score: 79.7221 bits (195), Expect = 1.547e-15
Identity = 58/173 (33.53%), Postives = 89/173 (51.45%), Query Frame = 0

Query:  112 LIVLGLPFSTTEAELKEFFEKFGPLTLASVKKN-NSGSSKGFGFIRFETMEAQKQSMLTR-HMMSGRWVDVKVPESLEK--KGAVNEGIYKVFVGRIDDTLTKEDLSEHFSQFGKVTDIFWPR-----PMRGFAFVSFLESK-VAQSLLNKDHLIKGVSVHIGLPDSKKRPSD 274
            L + GL F TTE  L+ ++E++G LT   V ++  S  S+GFGF+ F  M     +M TR H + GR V+ K   + E+  K   +  + K+FVG I +   +  L E+F ++GK+  I           RGFAFV+F +   V + +L K H I G +  +    SK+   D
Sbjct:   11 LFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMATRPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQD 183

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BLAST of tar dna-binding protein 43-like isoform x2 vs. SwissProt
Match: gi|190356061|sp|Q32P51.2|RA1L2_HUMAN (RecName: Full=Heterogeneous nuclear ribonucleoprotein A1-like 2; Short=hnRNP A1-like 2; AltName: Full=hnRNP core protein A1-like 2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.979e-15
Identity = 55/162 (33.95%), Postives = 89/162 (54.94%), Query Frame = 0

Query:  112 LIVLGLPFSTTEAELKEFFEKFGPLTLASVKKN-NSGSSKGFGFIRFETMEAQKQSM-LTRHMMSGRWVDVKVPESLE--KKGAVNEGIYKVFVGRIDDTLTKEDLSEHFSQFGK--VTDIFWPR---PMRGFAFVSFLES-KVAQSLLNKDHLIKGVSVHI 263
            L + GL F TT+  L+  FE++G LT   V ++ N+  S+GFGF+ + T+E    +M  T H + GR V+ K   S E  ++   +  + K+FVG I +   +  L ++F Q+GK  V +I   R     RGFAFV+F +   V + ++ K H +KG +  +
Sbjct:   16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEV 177

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BLAST of tar dna-binding protein 43-like isoform x2 vs. nr
Match: gi|1228394881|ref|XP_021956225.1| (TAR DNA-binding protein 43-like isoform X1 [Folsomia candida] >gi|1228394883|ref|XP_021956226.1| TAR DNA-binding protein 43-like isoform X1 [Folsomia candida])

HSP 1 Score: 260.766 bits (665), Expect = 3.841e-80
Identity = 139/283 (49.12%), Postives = 189/283 (66.78%), Query Frame = 0

Query:    1 MAAWVNIVDMDADDEPMEVQTEPDGTLLLTTITTQFPGTIGLKFKNPETGGFRGIRCKDNVLYPPNEDGWDSITFICTKPKV-ASKSD---EPPTKRAKVDEASVDSDKGDSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKKN-NSGSSKGFGFIRFETMEAQKQSMLTRHMMSGRWVDVKVPESLEKKGAVNEGIYKVFVGRIDDTLTKEDLSEHFSQFGKVTDIFWPRPMRGFAFVSFLESKVAQSLLNKDHLIKGVSVHIGLPDSKKRPSDSFGG 278
            M  ++ + + D  +EP+EV TE DG+LLL+T++ QFP T GLKF+NPE+GG RG+R  D   +PP E+GW ++   C  PK    KSD   E  T +AK  E +    K    +DLIVLGLP+ TTE +L+E+FE FG + +A VKK+  SG SKGFGFIRF   E+Q + +  RH++ GRW DVK+P S E + A      KVFVGR  + ++ EDL E+F++FG+VTD+F P+P R FAFV+FLE+ VAQSL  +DH++KGVSVH+     K  PS + GG
Sbjct:    1 MTTYIQVAE-DEGEEPIEVPTEEDGSLLLSTLSAQFPSTSGLKFRNPESGGIRGVRLVDGRFHPP-ENGWGNLVLYCVFPKENKRKSDDYLENSTAKAKRFENTSSKSK---CSDLIVLGLPWKTTEQQLREYFEPFGEVLMAQVKKDPKSGQSKGFGFIRFGNYESQLRVLSQRHLIEGRWCDVKIPNSKESQQAHVPA--KVFVGRCTEDISAEDLREYFTKFGEVTDVFIPKPFRAFAFVTFLEADVAQSLCGEDHIVKGVSVHVSNAAPKSDPSRNQGG 276

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BLAST of tar dna-binding protein 43-like isoform x2 vs. nr
Match: gi|1228394885|ref|XP_021956227.1| (TAR DNA-binding protein 43-like isoform X2 [Folsomia candida])

HSP 1 Score: 260.766 bits (665), Expect = 4.483e-80
Identity = 139/283 (49.12%), Postives = 189/283 (66.78%), Query Frame = 0

Query:    1 MAAWVNIVDMDADDEPMEVQTEPDGTLLLTTITTQFPGTIGLKFKNPETGGFRGIRCKDNVLYPPNEDGWDSITFICTKPKV-ASKSD---EPPTKRAKVDEASVDSDKGDSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKKN-NSGSSKGFGFIRFETMEAQKQSMLTRHMMSGRWVDVKVPESLEKKGAVNEGIYKVFVGRIDDTLTKEDLSEHFSQFGKVTDIFWPRPMRGFAFVSFLESKVAQSLLNKDHLIKGVSVHIGLPDSKKRPSDSFGG 278
            M  ++ + + D  +EP+EV TE DG+LLL+T++ QFP T GLKF+NPE+GG RG+R  D   +PP E+GW ++   C  PK    KSD   E  T +AK  E +    K    +DLIVLGLP+ TTE +L+E+FE FG + +A VKK+  SG SKGFGFIRF   E+Q + +  RH++ GRW DVK+P S E + A      KVFVGR  + ++ EDL E+F++FG+VTD+F P+P R FAFV+FLE+ VAQSL  +DH++KGVSVH+     K  PS + GG
Sbjct:    1 MTTYIQVAE-DEGEEPIEVPTEEDGSLLLSTLSAQFPSTSGLKFRNPESGGIRGVRLVDGRFHPP-ENGWGNLVLYCVFPKENKRKSDDYLENSTAKAKRFENTSSKSK---CSDLIVLGLPWKTTEQQLREYFEPFGEVLMAQVKKDPKSGQSKGFGFIRFGNYESQLRVLSQRHLIEGRWCDVKIPNSKESQQAHVPA--KVFVGRCTEDISAEDLREYFTKFGEVTDVFIPKPFRAFAFVTFLEADVAQSLCGEDHIVKGVSVHVSNAAPKSDPSRNQGG 276

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BLAST of tar dna-binding protein 43-like isoform x2 vs. nr
Match: gi|987915210|ref|XP_015433537.1| (PREDICTED: TAR DNA-binding protein 43 isoform X3 [Dufourea novaeangliae])

HSP 1 Score: 259.996 bits (663), Expect = 5.075e-80
Identity = 135/268 (50.37%), Postives = 182/268 (67.91%), Query Frame = 0

Query:    1 MAAWVNIVDMDADDEPMEVQTEPDGTLLLTTITTQFPGTIGLKFKNPETGGFRGIRCKDNVLYPPNEDGWDSITFICTKPKV-ASKSD---EPPTKRAKVDEASVDSDKGDSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKKN-NSGSSKGFGFIRFETMEAQKQSMLTRHMMSGRWVDVKVPESLEKKGAVNEGIYKVFVGRIDDTLTKEDLSEHFSQFGKVTDIFWPRPMRGFAFVSFLESKVAQSLLNKDHLIKGVSVHI 263
            M++++ + + D  DEP+E+ TE D TLLLTT+T QFPGT GLK++NPE+   RGIR  D  L+PP E+GW    + C  PK    KSD   E  T + K  E  +         DLIVLGLP+ TTE  L+E+FE FG + +A VKK+  SG SKGFGFIRF + E+Q + +  RHM+ GRW DVKVP S  K+G + +   KVFVGR  + LT +DL ++FS++G+VTD+F P+P R F+FV+FL+ +VAQSL  +DH+IKGVSVH+
Sbjct:    1 MSSYIQVAE-DESDEPIELPTEDDSTLLLTTVTAQFPGTCGLKYRNPESRTMRGIRLVDGRLHPP-ENGWGKAVYFCVFPKENKRKSDDNLENSTAKTKRMETKL------RCTDLIVLGLPWKTTEQNLREYFETFGEVLMAQVKKDAKSGQSKGFGFIRFGSYESQLRCLAQRHMIDGRWCDVKVPNS--KEGMIQQVPCKVFVGRCTEDLTADDLRDYFSKYGEVTDVFIPKPFRAFSFVTFLDPEVAQSLCGEDHIIKGVSVHV 258

[Close]

BLAST of tar dna-binding protein 43-like isoform x2 vs. nr
Match: gi|987915208|ref|XP_015433536.1| (PREDICTED: TAR DNA-binding protein 43 isoform X2 [Dufourea novaeangliae])

HSP 1 Score: 259.996 bits (663), Expect = 9.714e-80
Identity = 135/268 (50.37%), Postives = 182/268 (67.91%), Query Frame = 0

Query:    1 MAAWVNIVDMDADDEPMEVQTEPDGTLLLTTITTQFPGTIGLKFKNPETGGFRGIRCKDNVLYPPNEDGWDSITFICTKPKV-ASKSD---EPPTKRAKVDEASVDSDKGDSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKKN-NSGSSKGFGFIRFETMEAQKQSMLTRHMMSGRWVDVKVPESLEKKGAVNEGIYKVFVGRIDDTLTKEDLSEHFSQFGKVTDIFWPRPMRGFAFVSFLESKVAQSLLNKDHLIKGVSVHI 263
            M++++ + + D  DEP+E+ TE D TLLLTT+T QFPGT GLK++NPE+   RGIR  D  L+PP E+GW    + C  PK    KSD   E  T + K  E  +         DLIVLGLP+ TTE  L+E+FE FG + +A VKK+  SG SKGFGFIRF + E+Q + +  RHM+ GRW DVKVP S  K+G + +   KVFVGR  + LT +DL ++FS++G+VTD+F P+P R F+FV+FL+ +VAQSL  +DH+IKGVSVH+
Sbjct:    1 MSSYIQVAE-DESDEPIELPTEDDSTLLLTTVTAQFPGTCGLKYRNPESRTMRGIRLVDGRLHPP-ENGWGKAVYFCVFPKENKRKSDDNLENSTAKTKRMETKL------RCTDLIVLGLPWKTTEQNLREYFETFGEVLMAQVKKDAKSGQSKGFGFIRFGSYESQLRCLAQRHMIDGRWCDVKVPNS--KEGMIQQVPCKVFVGRCTEDLTADDLRDYFSKYGEVTDVFIPKPFRAFSFVTFLDPEVAQSLCGEDHIIKGVSVHV 258

[Close]

BLAST of tar dna-binding protein 43-like isoform x2 vs. nr
Match: gi|571544251|ref|XP_006563871.1| (PREDICTED: TAR DNA-binding protein 43 isoform X4 [Apis mellifera] >gi|572258271|ref|XP_006607518.1| PREDICTED: TAR DNA-binding protein 43-like isoform X5 [Apis dorsata] >gi|808148052|ref|XP_012175067.1| TAR DNA-binding protein 43 isoform X4 [Bombus terrestris] >gi|815910541|ref|XP_012240813.1| TAR DNA-binding protein 43 isoform X4 [Bombus impatiens] >gi|820846956|ref|XP_012341409.1| PREDICTED: TAR DNA-binding protein 43 isoform X5 [Apis florea] >gi|1035593582|ref|XP_016904088.1| PREDICTED: TAR DNA-binding protein 43 isoform X4 [Apis cerana] >gi|1059215514|ref|XP_017754538.1| PREDICTED: TAR DNA-binding protein 43 isoform X4 [Eufriesea mexicana] >gi|1061110430|ref|XP_017881474.1| PREDICTED: TAR DNA-binding protein 43 isoform X4 [Ceratina calcarata])

HSP 1 Score: 259.225 bits (661), Expect = 1.112e-79
Identity = 135/268 (50.37%), Postives = 182/268 (67.91%), Query Frame = 0

Query:    1 MAAWVNIVDMDADDEPMEVQTEPDGTLLLTTITTQFPGTIGLKFKNPETGGFRGIRCKDNVLYPPNEDGWDSITFICTKPKV-ASKSD---EPPTKRAKVDEASVDSDKGDSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKKN-NSGSSKGFGFIRFETMEAQKQSMLTRHMMSGRWVDVKVPESLEKKGAVNEGIYKVFVGRIDDTLTKEDLSEHFSQFGKVTDIFWPRPMRGFAFVSFLESKVAQSLLNKDHLIKGVSVHI 263
            M++++ + + D  DEP+E+ TE D TLLLTT+T QFPGT GLK++NPE+   RGIR  D  L+PP E+GW    + C  PK    KSD   E  T + K  E  +         DLIVLGLP+ TTE  L+E+FE FG + +A VKK+  SG SKGFGFIRF + E+Q + +  RHM+ GRW DVKVP S  K+G + +   KVFVGR  + LT +DL ++FS++G+VTD+F P+P R F+FV+FL+ +VAQSL  +DH+IKGVSVH+
Sbjct:    1 MSSYIQVAE-DEGDEPIELPTEDDSTLLLTTVTAQFPGTCGLKYRNPESRTMRGIRLVDGRLHPP-ENGWGKAIYFCVFPKENKRKSDDNLENSTAKTKRMETKL------RCTDLIVLGLPWKTTEQNLREYFETFGEVLMAQVKKDAKSGQSKGFGFIRFGSYESQLRCLAQRHMIDGRWCDVKVPNS--KEGMIQQVPCKVFVGRCTEDLTADDLRDYFSKYGEVTDVFIPKPFRAFSFVTFLDPEVAQSLCGEDHIIKGVSVHV 258

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BLAST of tar dna-binding protein 43-like isoform x2 vs. nr
Match: gi|242023524|ref|XP_002432182.1| (Heterogeneous nuclear ribonucleoprotein A1, putative [Pediculus humanus corporis] >gi|212517579|gb|EEB19444.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Pediculus humanus corporis])

HSP 1 Score: 258.84 bits (660), Expect = 2.110e-79
Identity = 137/285 (48.07%), Postives = 193/285 (67.72%), Query Frame = 0

Query:    1 MAAWVNIVDMDADDEPMEVQTEPDGTLLLTTITTQFPGTIGLKFKNPETGGFRGIRCKDNVLYPPNEDGWDSITFICTKPKV-ASKSD---EPPTKRAKVDEASVDSDKGDSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKKN-NSGSSKGFGFIRFETMEAQKQSMLTRHMMSGRWVDVKVPESLEKKGAVNEGIYKVFVGRIDDTLTKEDLSEHFSQFGKVTDIFWPRPMRGFAFVSFLESKVAQSLLNKDHLIKGVSVHIGLPDSKKRPSDSFGGGG 280
            M++++ + +++ + EP+E+ TE DGTLLL+T+  QFPGT GLK++NPE+ G RG+R  +  L+PP ++GW S+ + C  PK    KSD   E  T + K  E  +        +DLIVLGLP+ TTE +L+E+FE +G + +A VKK+  SG SKGFGF+RF + EAQ + +  RHM+  RW DVKVP S  K+G V +   KVFVGR  + +T EDL E+FS+FG+VTD+F P+P R FAFV+FL+ +VAQSL  +DH+IKG SVH+    + K  +D  GG G
Sbjct:    1 MSSYIQVSEVEGE-EPIELPTEDDGTLLLSTLAAQFPGTCGLKYRNPESMGLRGVRLVEGRLHPP-DNGWGSVVYYCVFPKENKRKSDDLLENSTAKTKRMETKL------KCSDLIVLGLPWKTTEQQLREYFETYGEVLMAQVKKDPKSGQSKGFGFVRFGSYEAQARVLTQRHMIDSRWCDVKVPNS--KEGMVQQVPCKVFVGRCTEDITAEDLREYFSKFGEVTDVFIPKPFRAFAFVTFLDPEVAQSLCGEDHIIKGTSVHVS-NAAPKSANDHRGGFG 274

[Close]

BLAST of tar dna-binding protein 43-like isoform x2 vs. nr
Match: gi|328783809|ref|XP_392590.4| (PREDICTED: TAR DNA-binding protein 43 isoform X1 [Apis mellifera] >gi|350411720|ref|XP_003489432.1| TAR DNA-binding protein 43 isoform X1 [Bombus impatiens] >gi|380018789|ref|XP_003693304.1| PREDICTED: TAR DNA-binding protein 43 isoform X1 [Apis florea] >gi|572258261|ref|XP_006607514.1| PREDICTED: TAR DNA-binding protein 43-like isoform X1 [Apis dorsata] >gi|808148046|ref|XP_012175063.1| TAR DNA-binding protein 43 isoform X1 [Bombus terrestris] >gi|1035593574|ref|XP_016904085.1| PREDICTED: TAR DNA-binding protein 43 isoform X1 [Apis cerana] >gi|1059215508|ref|XP_017754535.1| PREDICTED: TAR DNA-binding protein 43 isoform X1 [Eufriesea mexicana] >gi|1061110421|ref|XP_017881471.1| PREDICTED: TAR DNA-binding protein 43 isoform X2 [Ceratina calcarata] >gi|1061110425|ref|XP_017881472.1| PREDICTED: TAR DNA-binding protein 43 isoform X2 [Ceratina calcarata] >gi|1185552504|ref|XP_020723733.1| TAR DNA-binding protein 43 isoform X1 [Bombus terrestris] >gi|1185552506|ref|XP_020723734.1| TAR DNA-binding protein 43 isoform X1 [Bombus terrestris] >gi|1185552508|ref|XP_020723735.1| TAR DNA-binding protein 43 isoform X1 [Bombus terrestris])

HSP 1 Score: 259.225 bits (661), Expect = 2.296e-79
Identity = 135/268 (50.37%), Postives = 182/268 (67.91%), Query Frame = 0

Query:    1 MAAWVNIVDMDADDEPMEVQTEPDGTLLLTTITTQFPGTIGLKFKNPETGGFRGIRCKDNVLYPPNEDGWDSITFICTKPKV-ASKSD---EPPTKRAKVDEASVDSDKGDSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKKN-NSGSSKGFGFIRFETMEAQKQSMLTRHMMSGRWVDVKVPESLEKKGAVNEGIYKVFVGRIDDTLTKEDLSEHFSQFGKVTDIFWPRPMRGFAFVSFLESKVAQSLLNKDHLIKGVSVHI 263
            M++++ + + D  DEP+E+ TE D TLLLTT+T QFPGT GLK++NPE+   RGIR  D  L+PP E+GW    + C  PK    KSD   E  T + K  E  +         DLIVLGLP+ TTE  L+E+FE FG + +A VKK+  SG SKGFGFIRF + E+Q + +  RHM+ GRW DVKVP S  K+G + +   KVFVGR  + LT +DL ++FS++G+VTD+F P+P R F+FV+FL+ +VAQSL  +DH+IKGVSVH+
Sbjct:    1 MSSYIQVAE-DEGDEPIELPTEDDSTLLLTTVTAQFPGTCGLKYRNPESRTMRGIRLVDGRLHPP-ENGWGKAIYFCVFPKENKRKSDDNLENSTAKTKRMETKL------RCTDLIVLGLPWKTTEQNLREYFETFGEVLMAQVKKDAKSGQSKGFGFIRFGSYESQLRCLAQRHMIDGRWCDVKVPNS--KEGMIQQVPCKVFVGRCTEDLTADDLRDYFSKYGEVTDVFIPKPFRAFSFVTFLDPEVAQSLCGEDHIIKGVSVHV 258

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BLAST of tar dna-binding protein 43-like isoform x2 vs. nr
Match: gi|571544247|ref|XP_006563870.1| (PREDICTED: TAR DNA-binding protein 43 isoform X3 [Apis mellifera] >gi|572258267|ref|XP_006607516.1| PREDICTED: TAR DNA-binding protein 43-like isoform X3 [Apis dorsata] >gi|808148050|ref|XP_012175065.1| TAR DNA-binding protein 43 isoform X3 [Bombus terrestris] >gi|815910539|ref|XP_012240812.1| TAR DNA-binding protein 43 isoform X3 [Bombus impatiens] >gi|820846952|ref|XP_012341407.1| PREDICTED: TAR DNA-binding protein 43 isoform X3 [Apis florea] >gi|1035593580|ref|XP_016904087.1| PREDICTED: TAR DNA-binding protein 43 isoform X3 [Apis cerana] >gi|1059215512|ref|XP_017754537.1| PREDICTED: TAR DNA-binding protein 43 isoform X3 [Eufriesea mexicana])

HSP 1 Score: 258.455 bits (659), Expect = 2.743e-79
Identity = 130/264 (49.24%), Postives = 177/264 (67.05%), Query Frame = 0

Query:    1 MAAWVNIVDMDADDEPMEVQTEPDGTLLLTTITTQFPGTIGLKFKNPETGGFRGIRCKDNVLYPPNEDGWDSITFICTKPKVASKSDEPPTKRAKVDEASVDSDKGDSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKKN-NSGSSKGFGFIRFETMEAQKQSMLTRHMMSGRWVDVKVPESLEKKGAVNEGIYKVFVGRIDDTLTKEDLSEHFSQFGKVTDIFWPRPMRGFAFVSFLESKVAQSLLNKDHLIKGVSVHI 263
            M++++ + + D  DEP+E+ TE D TLLLTT+T QFPGT GLK++NPE+   RGIR  D  L+PP E+GW    + C  PK  +K  E   +                  DLIVLGLP+ TTE  L+E+FE FG + +A VKK+  SG SKGFGFIRF + E+Q + +  RHM+ GRW DVKVP S  K+G + +   KVFVGR  + LT +DL ++FS++G+VTD+F P+P R F+FV+FL+ +VAQSL  +DH+IKGVSVH+
Sbjct:    1 MSSYIQVAE-DEGDEPIELPTEDDSTLLLTTVTAQFPGTCGLKYRNPESRTMRGIRLVDGRLHPP-ENGWGKAIYFCVFPKAKTKRMETKLR----------------CTDLIVLGLPWKTTEQNLREYFETFGEVLMAQVKKDAKSGQSKGFGFIRFGSYESQLRCLAQRHMIDGRWCDVKVPNS--KEGMIQQVPCKVFVGRCTEDLTADDLRDYFSKYGEVTDVFIPKPFRAFSFVTFLDPEVAQSLCGEDHIIKGVSVHV 244

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BLAST of tar dna-binding protein 43-like isoform x2 vs. nr
Match: gi|1059872676|ref|XP_017791299.1| (PREDICTED: TAR DNA-binding protein 43 isoform X3 [Habropoda laboriosa])

HSP 1 Score: 258.07 bits (658), Expect = 2.965e-79
Identity = 135/268 (50.37%), Postives = 181/268 (67.54%), Query Frame = 0

Query:    1 MAAWVNIVDMDADDEPMEVQTEPDGTLLLTTITTQFPGTIGLKFKNPETGGFRGIRCKDNVLYPPNEDGWDSITFICTKPKV-ASKSD---EPPTKRAKVDEASVDSDKGDSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKKN-NSGSSKGFGFIRFETMEAQKQSMLTRHMMSGRWVDVKVPESLEKKGAVNEGIYKVFVGRIDDTLTKEDLSEHFSQFGKVTDIFWPRPMRGFAFVSFLESKVAQSLLNKDHLIKGVSVHI 263
            M+ ++ + + D  DEP+E+ TE D TLLLTT+T QFPGT GLK++NPE+   RGIR  D  L+PP E+GW    + C  PK    KSD   E  T + K  E  +         DLIVLGLP+ TTE  L+E+FE FG + +A VKK+  SG SKGFGFIRF + E+Q + +  RHM+ GRW DVKVP S  K+G + +   KVFVGR  + LT +DL ++FS++G+VTD+F P+P R F+FV+FL+ +VAQSL  +DH+IKGVSVH+
Sbjct:    1 MSLYIQVAE-DEGDEPIELPTEDDSTLLLTTVTAQFPGTCGLKYRNPESRTMRGIRLVDGRLHPP-ENGWGKAIYFCVFPKENKRKSDDNLENSTAKTKRMETKL------RCTDLIVLGLPWKTTEQNLREYFETFGEVLMAQVKKDAKSGQSKGFGFIRFGSYESQLRCLAQRHMIDGRWCDVKVPNS--KEGMIQQVPCKVFVGRCTEDLTADDLRDYFSKYGEVTDVFIPKPFRAFSFVTFLDPEVAQSLCGEDHIIKGVSVHV 258

[Close]

BLAST of tar dna-binding protein 43-like isoform x2 vs. nr
Match: gi|1059872674|ref|XP_017791298.1| (PREDICTED: TAR DNA-binding protein 43 isoform X2 [Habropoda laboriosa])

HSP 1 Score: 258.07 bits (658), Expect = 5.200e-79
Identity = 135/268 (50.37%), Postives = 181/268 (67.54%), Query Frame = 0

Query:    1 MAAWVNIVDMDADDEPMEVQTEPDGTLLLTTITTQFPGTIGLKFKNPETGGFRGIRCKDNVLYPPNEDGWDSITFICTKPKV-ASKSD---EPPTKRAKVDEASVDSDKGDSTNDLIVLGLPFSTTEAELKEFFEKFGPLTLASVKKN-NSGSSKGFGFIRFETMEAQKQSMLTRHMMSGRWVDVKVPESLEKKGAVNEGIYKVFVGRIDDTLTKEDLSEHFSQFGKVTDIFWPRPMRGFAFVSFLESKVAQSLLNKDHLIKGVSVHI 263
            M+ ++ + + D  DEP+E+ TE D TLLLTT+T QFPGT GLK++NPE+   RGIR  D  L+PP E+GW    + C  PK    KSD   E  T + K  E  +         DLIVLGLP+ TTE  L+E+FE FG + +A VKK+  SG SKGFGFIRF + E+Q + +  RHM+ GRW DVKVP S  K+G + +   KVFVGR  + LT +DL ++FS++G+VTD+F P+P R F+FV+FL+ +VAQSL  +DH+IKGVSVH+
Sbjct:    1 MSLYIQVAE-DEGDEPIELPTEDDSTLLLTTVTAQFPGTCGLKYRNPESRTMRGIRLVDGRLHPP-ENGWGKAIYFCVFPKENKRKSDDNLENSTAKTKRMETKL------RCTDLIVLGLPWKTTEQNLREYFETFGEVLMAQVKKDAKSGQSKGFGFIRFGSYESQLRCLAQRHMIDGRWCDVKVPNS--KEGMIQQVPCKVFVGRCTEDLTADDLRDYFSKYGEVTDVFIPKPFRAFSFVTFLDPEVAQSLCGEDHIIKGVSVHV 258

The following BLAST results are available for this feature:

BLAST of tar dna-binding protein 43-like isoform x2 vs. L. salmonis genes
BLAST of tar dna-binding protein 43-like isoform x2 vs. SwissProt
BLAST of tar dna-binding protein 43-like isoform x2 vs. nr

BLAST of tar dna-binding protein 43-like isoform x2 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 14


Match Name	E-value	Identity	Description
EMLSAG00000012034	6.762e-79	41.07	supercontig:LSalAtl2s:LSalAtl2s858:196241:197383:1...	[more]
EMLSAG00000008061	7.671e-16	28.81	supercontig:LSalAtl2s:LSalAtl2s47:228294:229145:-1...	[more]
EMLSAG00000012985	1.918e-15	36.75	supercontig:LSalAtl2s:LSalAtl2s98:287705:288759:1 ...	[more]
EMLSAG00000006441	2.485e-13	33.94	supercontig:LSalAtl2s:LSalAtl2s351:658541:663148:1...	[more]
EMLSAG00000007356	4.897e-12	29.87	supercontig:LSalAtl2s:LSalAtl2s418:127995:128853:-...	[more]
EMLSAG00000011736	1.028e-11	29.21	supercontig:LSalAtl2s:LSalAtl2s816:217425:223501:1...	[more]
EMLSAG00000005517	7.344e-11	26.94	supercontig:LSalAtl2s:LSalAtl2s297:281209:289703:-...	[more]
EMLSAG00000007863	8.176e-11	32.85	supercontig:LSalAtl2s:LSalAtl2s460:94042:141135:-1...	[more]
EMLSAG00000000160	2.110e-10	28.05	supercontig:LSalAtl2s:LSalAtl2s1025:101799:103083:...	[more]
EMLSAG00000004804	2.846e-10	29.38	supercontig:LSalAtl2s:LSalAtl2s253:647394:650584:1...	[more]

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BLAST of tar dna-binding protein 43-like isoform x2 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|20140568\|sp\|Q13148.1\|TADBP_HUMAN	1.190e-70	43.80	RecName: Full=TAR DNA-binding protein 43; Short=TD...	[more]
gi\|75070499\|sp\|Q5R5W2.1\|TADBP_PONAB	2.036e-70	43.80	RecName: Full=TAR DNA-binding protein 43; Short=TD...	[more]
gi\|123915948\|sp\|Q28F51.1\|TADBP_XENTR	4.293e-70	42.91	RecName: Full=TAR DNA-binding protein 43; Short=TD...	[more]
gi\|82233907\|sp\|Q5ZLN5.1\|TADBP_CHICK	7.329e-69	43.43	RecName: Full=TAR DNA-binding protein 43; Short=TD...	[more]
gi\|20140642\|sp\|Q921F2.1\|TADBP_MOUSE	1.732e-66	42.00	RecName: Full=TAR DNA-binding protein 43; Short=TD...	[more]
gi\|857338755\|sp\|D0VWM8.1\|TADBP_CAEEL	6.107e-41	32.57	RecName: Full=Tar DNA-binding protein homolog 1	[more]
gi\|76803817\|sp\|P48809.2\|RB27C_DROME	6.166e-17	34.24	RecName: Full=Heterogeneous nuclear ribonucleoprot...	[more]
gi\|729000\|sp\|Q99020.1\|ROAA_MOUSE	2.036e-16	30.54	RecName: Full=Heterogeneous nuclear ribonucleoprot...	[more]
gi\|1710623\|sp\|P51989.1\|RO21_XENLA	1.547e-15	33.53	RecName: Full=Heterogeneous nuclear ribonucleoprot...	[more]
gi\|190356061\|sp\|Q32P51.2\|RA1L2_HUMAN	2.979e-15	33.95	RecName: Full=Heterogeneous nuclear ribonucleoprot...	[more]

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BLAST of tar dna-binding protein 43-like isoform x2 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1228394881\|ref\|XP_021956225.1\|	3.841e-80	49.12	TAR DNA-binding protein 43-like isoform X1 [Folsom...	[more]
gi\|1228394885\|ref\|XP_021956227.1\|	4.483e-80	49.12	TAR DNA-binding protein 43-like isoform X2 [Folsom...	[more]
gi\|987915210\|ref\|XP_015433537.1\|	5.075e-80	50.37	PREDICTED: TAR DNA-binding protein 43 isoform X3 [...	[more]
gi\|987915208\|ref\|XP_015433536.1\|	9.714e-80	50.37	PREDICTED: TAR DNA-binding protein 43 isoform X2 [...	[more]
gi\|571544251\|ref\|XP_006563871.1\|	1.112e-79	50.37	PREDICTED: TAR DNA-binding protein 43 isoform X4 [...	[more]
gi\|242023524\|ref\|XP_002432182.1\|	2.110e-79	48.07	Heterogeneous nuclear ribonucleoprotein A1, putati...	[more]
gi\|328783809\|ref\|XP_392590.4\|	2.296e-79	50.37	PREDICTED: TAR DNA-binding protein 43 isoform X1 [...	[more]
gi\|571544247\|ref\|XP_006563870.1\|	2.743e-79	49.24	PREDICTED: TAR DNA-binding protein 43 isoform X3 [...	[more]
gi\|1059872676\|ref\|XP_017791299.1\|	2.965e-79	50.37	PREDICTED: TAR DNA-binding protein 43 isoform X3 [...	[more]
gi\|1059872674\|ref\|XP_017791298.1\|	5.200e-79	50.37	PREDICTED: TAR DNA-binding protein 43 isoform X2 [...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold714_size108203	supercontig	scaffold714_size108203:95538..96551 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	C:integral to membrane

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold714_size108203-processed-gene-0.5-mRNA-1	snap_masked-scaffold714_size108203-processed-gene-0.5-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold714_size108203:95538..96551+

gene from alignment at scaffold714_size108203:95538..96551+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold714_size108203-processed-gene-0.5 ID=snap_masked-scaffold714_size108203-processed-gene-0.5|Name=tar dna-binding protein 43-like isoform x2|organism=Tigriopus kingsejongensis|type=gene|length=1014bp|location=Sequence derived from alignment at scaffold714_size108203:95538..96551+ (Tigriopus kingsejongensis)
ATGGCTGCGTGGGTGAATATTGTGGATATGGATGCTGATGATGAGCCGAT
GGAGGTACAGACGGAGCCGGATGGAACCCTCCTCCTGACTACTATCACAA
CGCAATTCCCAGGCACCATCGGTCTCAAGTTTAAGAATCCTGAGACTGGG
GGCTTCCGGGGCATTCGCTGCAAGGACAATGTTCTCTACCCTCCCAATGA
GGATGGCTGGGATTCGATTACCTTCATTTGCACCAAGCCCAAAGTGGCTA
GCAAGTCTGACGAGCCGCCGACTAAGCGGGCCAAGGTGGATGAAGCCTCG
GTCGACAGCGACAAGGGCGACAGCACCAATGATTTGATTGTTCTGGGTTT
GCCCTTCAGCACCACGGAGGCTGAATTGAAAGAGTTCTTTGAGAAATTTG
GTCCCCTCACCCTCGCTTCGGTTAAGAAGAACAACAGCGGATCTTCCAAA
GGCTTCGGCTTCATCCGATTCGAAACCATGGAAGCTCAAAAGCAATCCAT
GCTCACTCGACACATGATGAGTGGGCGATGGGTGGACGTGAAGGTGCCGG
AGTCGTTGGAAAAGAAGGGTGCGGTCAATGAGGGCATCTACAAGGTGTTT
GTGGGCCGAATTGATGACACGCTCACCAAAGAGGATTTGAGCGAGCACTT
CAGTCAATTCGGAAAGGTCACAGACATCTTCTGGCCTCGACCGATGAGAG
GCTTCGCCTTTGTCTCCTTTCTGGAGTCGAAGGTGGCTCAGAGTCTGTTG
AACAAAGACCACCTCATTAAGGGCGTGTCGGTTCACATTGGCCTGCCCGA
TAGCAAGAAGCGACCCTCCGACTCTTTTGGCGGCGGCGGAGGTGGTGGAG
GCGGCCCTCCTCATGCCGACAAATGGGGTGGGAACCGAGGAGATCCTGCC
CCTTGGGGAAACTCGGGAGGGGGCAGATCGGATGAGTGGCAAGACAGGCG
GGACAGCTACGGGGGAGGCCCTAGAGGTGGTGGGGGCGGTAGATCCCAAG
GAAGCTATTACTAA

Synonyms

The feature 'tar dna-binding protein 43-like isoform x2' has the following synonyms


Synonym
Tk02387

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