rna-binding protein squid, snap_masked-scaffold939_size78603-processed-gene-0.3 (gene) Tigriopus kingsejongensis

Overview


Name	rna-binding protein squid
Unique Name	snap_masked-scaffold939_size78603-processed-gene-0.3
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of rna-binding protein squid vs. L. salmonis genes
Match: EMLSAG00000008061 (supercontig:LSalAtl2s:LSalAtl2s47:228294:229145:-1 gene:EMLSAG00000008061 transcript:EMLSAT00000008061 description:"augustus_masked-LSalAtl2s47-processed-gene-2.0")

HSP 1 Score: 174.096 bits (440), Expect = 1.507e-53
Identity = 108/208 (51.92%), Postives = 142/208 (68.27%), Query Frame = 0

Query:    1 MGDTEMSTVSEDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQGKIYVGKFTANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLKQD-GGMRGGRGGGGMRGGMGRGGQGGQGNWGGGYD 207
            M  +  +T  EDDRKLF GGLPQ+  + ++KE+F  FG + S+NIK D  TGRSRGFAF+V++ +  L+K +  E H  K+KKVAVKKA +KQGK+YVGK    IS+++IK HFSQYG V  V++P D++K NE KNFCF+TFEK++ A  LLK+GT  + G E+E+KKV  K D  GM G   G G  GG   G     G+WG GY+
Sbjct:   11 MDTSVEATNDEDDRKLFVGGLPQDAKDCDIKEHFEGFGEIESINIKTDPQTGRSRGFAFVVFKSLEGLEKAVSAE-HTVKSKKVAVKKAQAKQGKVYVGKLKPEISDEDIKTHFSQYGPVANVEQPFDKTK-NERKNFCFITFEKEEPAKKLLKEGTVTLKGAELEIKKVXPKPDIRGMVGPVMGRGRGGGGAGGPWSACGSWGAGYN 216

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BLAST of rna-binding protein squid vs. L. salmonis genes
Match: EMLSAG00000012985 (supercontig:LSalAtl2s:LSalAtl2s98:287705:288759:1 gene:EMLSAG00000012985 transcript:EMLSAT00000012985 description:"maker-LSalAtl2s98-snap-gene-3.11")

HSP 1 Score: 171.785 bits (434), Expect = 5.342e-53
Identity = 102/206 (49.51%), Postives = 129/206 (62.62%), Query Frame = 0

Query:   10 SEDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQGKIYVGKFT-ANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLKQDGGMRGGRGGGGMRGGMGRGGQGGQGNWGGGYDAWGGYGG 214
            SEDDRKLF GGLPQE +E +LKEYF  +G+VTS  +KMD MTGRSRGFAF+V+    SL+ VL+ E H  K KKVA KKA +KQGK+YVGKF   +I+E++IK HFSQYG VVE+Q+              F    +  +   + ++    ++GQEVE+KKVT+K +    GG GG G   G       G   WGGGYD   GYG 
Sbjct:   13 SEDDRKLFVGGLPQEASENDLKEYFEAYGSVTSTVLKMDQMTGRSRGFAFVVFATPESLESVLEQE-HVVKGKKVACKKATAKQGKVYVGKFLDGSITEEDIKSHFSQYGTVVEIQQ------------LLFCDLRQRGSRREITQRKKVTLNGQEVEIKKVTIKPELSRGGGGGGAGGGRGRNNAPWAGYDPWGGGYDGSWGYGA 205

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BLAST of rna-binding protein squid vs. L. salmonis genes
Match: EMLSAG00000007356 (supercontig:LSalAtl2s:LSalAtl2s418:127995:128853:-1 gene:EMLSAG00000007356 transcript:EMLSAT00000007356 description:"snap_masked-LSalAtl2s418-processed-gene-1.5")

HSP 1 Score: 137.502 bits (345), Expect = 3.602e-40
Identity = 72/162 (44.44%), Postives = 117/162 (72.22%), Query Frame = 0

Query:    9 VSEDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQGKIYV-GKFTANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKK 169
            +S++DRK+F GGL  ET E +LKEYF QFG + S N+K++++TG+SR FAF++++D  S+ KVL++  H   +KKV VK+A +K GK++  G    + SE+E+K++FS +GN++E + P D+ K NE K+F FVTFEK+++   +LK G  ++   E++L++
Sbjct:    6 LSDEDRKIFVGGLCWETGEVQLKEYFSQFGEIESANLKLNSVTGKSRCFAFVLFKDTESVSKVLQNT-HAINSKKVDVKRAKAKPGKVFFGGLHPESPSEEELKEYFSHFGNILEFEIPQDKIK-NERKSFGFVTFEKEESMKKVLKVGKVSLAHCELDLRR 165

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BLAST of rna-binding protein squid vs. L. salmonis genes
Match: EMLSAG00000007863 (supercontig:LSalAtl2s:LSalAtl2s460:94042:141135:-1 gene:EMLSAG00000007863 transcript:EMLSAT00000007863 description:"maker-LSalAtl2s460-augustus-gene-1.7")

HSP 1 Score: 98.9821 bits (245), Expect = 5.344e-24
Identity = 65/177 (36.72%), Postives = 93/177 (52.54%), Query Frame = 0

Query:    7 STVSEDDR--KLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKA-------ASKQGKIYVGKFTANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLKQ 174
            ST S D    KLF GGL  +TT ++L+EYFGQFG+VT           RSRGF FI +    ++D+VL    H    KK+  K A       A+K  KI+VG  + + S +E+K  F+Q+G V E    +D+      + F FVTFE +D  + + +     V  ++VE KK   K+
Sbjct:   42 STPSSDSSPGKLFVGGLSWQTTPDKLREYFGQFGSVTD----------RSRGFGFITFSTPDAVDRVLAVVTHTLDGKKIDPKHATPKSKSKANKTKKIFVGGVSQDTSAEEVKAXFNQFGKVEEAXMLMDQQTKRH-RGFGFVTFESEDVVDRVCEIHFHTVKNKKVECKKAQPKE 207

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BLAST of rna-binding protein squid vs. L. salmonis genes
Match: EMLSAG00000006441 (supercontig:LSalAtl2s:LSalAtl2s351:658541:663148:1 gene:EMLSAG00000006441 transcript:EMLSAT00000006441 description:"maker-LSalAtl2s351-snap-gene-6.33")

HSP 1 Score: 97.8265 bits (242), Expect = 8.602e-24
Identity = 66/244 (27.05%), Postives = 103/244 (42.21%), Query Frame = 0

Query:   11 EDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQ----------GKIYVGKFTANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKK--------------------VTLKQDGGMRGGRGGGGMRGGMGRGGQGGQGNWGGGYDAWGGYGGGWGDYGGWGG 224
            E+  KLF GGL  +TT+E L  YFG FG V    +  +A +GRSRGF F+ + D +++D VL    H    + +  K    +            K+++G   +N++E +++  FS+YG V EV    D+ K    + F F++F  D   N    +   N+  ++VE+K+                     ++   GG      G  M+      GQ  Q   GGG             Y  WG 
Sbjct:   38 EEQGKLFVGGLSWDTTQETLLRYFGGFGEVIDCVVMKNAESGRSRGFGFVTFSDPANIDAVLSSCPHTLDGRTIDPKACNPRSMQKPKKTNYFPKVFLGGLPSNLTETDLRNFFSRYGEVCEVIIMYDQEKKKS-RGFGFLSFSDDQAVNRACAEHFVNIQNKQVEIKRAEPRTQTATWNKDSMEQWGAASMTVPGGPPPITIGSPMQHPAHTNGQHIQQASGGGVPHPSSAPQQHTHYSAWGS 280

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BLAST of rna-binding protein squid vs. L. salmonis genes
Match: EMLSAG00000012034 (supercontig:LSalAtl2s:LSalAtl2s858:196241:197383:1 gene:EMLSAG00000012034 transcript:EMLSAT00000012034 description:"augustus_masked-LSalAtl2s858-processed-gene-2.3")

HSP 1 Score: 76.6406 bits (187), Expect = 2.451e-16
Identity = 63/203 (31.03%), Postives = 94/203 (46.31%), Query Frame = 0

Query:   16 LFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQ---------GKIYVGKFTANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEP-KNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTL---KQDGGMRGGRGGGGMRGGMGRGGQGGQGNWGGG 205
            L   GL  +T E ++++YF QFG +  V +K    T +S+GFAFI + D S   KV     H   ++   VK   S++          KI+VG+ T N+  D+I++HF  +G V +V  P       +P ++FCFVTF +   A  L         G+E  LK VT+        ++    G   RG      +    N GGG
Sbjct:  145 LIVLGLHWQTAEPDIRKYFEQFGELALVQLKTKMGTNQSKGFAFIRFVDPSIQFKVTLTR-HWINDRWCDVKIPDSQELKRSKEMNSCKIFVGRITQNMDGDDIRKHFETFGAVKDVYIP-------KPFRSFCFVTFNESRVAQSLW--------GKEHTLKGVTICIASAHSKLKESEMGRTHRGAPPPHPRAMTTNGGGG 331

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BLAST of rna-binding protein squid vs. L. salmonis genes
Match: EMLSAG00000005517 (supercontig:LSalAtl2s:LSalAtl2s297:281209:289703:-1 gene:EMLSAG00000005517 transcript:EMLSAT00000005517 description:"maker-LSalAtl2s297-augustus-gene-3.62")

HSP 1 Score: 74.3294 bits (181), Expect = 2.648e-15
Identity = 51/187 (27.27%), Postives = 82/187 (43.85%), Query Frame = 0

Query:   16 LFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAA----------------------------SKQGKIYVGKFTANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLKQ 174
            LF G L   TTE +L+ YF  FGT+TSV I      G+++ F F+ +E    + K+L    H    K + ++ A+                            S + KI+VG  + N   D+++ +FS +G V  V    D       + F FVTFE + TA  +       +  ++VE KK ++ +
Sbjct:   24 LFVGNLSLYTTEFKLQTYFSTFGTLTSVKICTHPENGKNKRFGFLNFESADVISKILNYPRHEIDGKILEIRYASKNMLNKRKNSVVKAKSPENEEVNPRIETSNKAKIFVGGVSQNAKVDDLRSYFSSFGPVQNVTLLPDHITGRH-RGFGFVTFENESTAEVVCSSRYHTIKMKKVECKKASVSR 209

HSP 2 Score: 69.707 bits (169), Expect = 1.228e-13
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 0

Query:   10 SEDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAA-SKQGKIY 97
            + +  K+F GG+ Q    ++L+ YF  FG V +V +  D +TGR RGF F+ +E+ S+ + V    +H  K KKV  KKA+ S+  K Y
Sbjct:  126 TSNKAKIFVGGVSQNAKVDDLRSYFSSFGPVQNVTLLPDHITGRHRGFGFVTFENESTAEVVCSSRYHTIKMKKVECKKASVSRATKSY 214

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BLAST of rna-binding protein squid vs. L. salmonis genes
Match: EMLSAG00000005340 (supercontig:LSalAtl2s:LSalAtl2s287:281236:323990:-1 gene:EMLSAG00000005340 transcript:EMLSAT00000005340 description:"augustus_masked-LSalAtl2s287-processed-gene-3.0")

HSP 1 Score: 70.0922 bits (170), Expect = 2.385e-14
Identity = 34/83 (40.96%), Postives = 46/83 (55.42%), Query Frame = 0

Query:   14 RKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQGKI 96
            +K+F GGL   +T E++K YF QFG +    +  D  T R RGF F+ +E    +DKV +  FH   NK V  KKA  K+  I
Sbjct:   55 KKIFVGGLSAPSTLEDVKNYFEQFGRIEDAMLMFDKQTNRHRGFGFVTFESEDVVDKVCEIHFHEINNKMVECKKAQPKEVMI 137

HSP 2 Score: 62.003 bits (149), Expect = 1.471e-11
Identity = 38/129 (29.46%), Postives = 67/129 (51.94%), Query Frame = 0

Query:   55 RGFAFIVYEDVSSLDKVLKDEFHNFKNKKV---------AVKKAASKQGKIYVGKFTANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLKQ 174
            RGF F+ + D +S+DKVL +  H+   KK+         A  K  ++  KI+VG  +A  + +++K +F Q+G + +     D+  N   + F FVTFE +D  + + +     ++ + VE KK   K+
Sbjct:    7 RGFGFVTFSDPNSVDKVLSNGSHDLDGKKIDPKVAFPRRAHPKMVTRTKKIFVGGLSAPSTLEDVKNYFEQFGRIEDAMLMFDKQTNRH-RGFGFVTFESEDVVDKVCEIHFHEINNKMVECKKAQPKE 134

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BLAST of rna-binding protein squid vs. L. salmonis genes
Match: EMLSAG00000000160 (supercontig:LSalAtl2s:LSalAtl2s1025:101799:103083:1 gene:EMLSAG00000000160 transcript:EMLSAT00000000160 description:"maker-LSalAtl2s1025-augustus-gene-0.45")

HSP 1 Score: 70.0922 bits (170), Expect = 5.525e-14
Identity = 47/183 (25.68%), Postives = 81/183 (44.26%), Query Frame = 0

Query:   11 EDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQ--------------GKIYVGKFTANISEDEIKQHFSQYGNVVEVQ----RPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLKQD 175
            E +RKLF GGL   TTE+ LK+YF ++G +  + +     T RSRGF F+ +  V       ++  H   +  +  K+A  K+               K+++G    +  ++ +K  F Q+G +V+      R   RS     + F F  +   D  +         + G +VE K+ T ++D
Sbjct:   12 EKERKLFLGGLNYSTTEDGLKKYFEKYGELVDIVVMXFPDTRRSRGFGFVTFAQVDQAXACFEERPHTIDSTTIETKRATPKEEMESADEGSQPEVMRKLFIGGLDYSTDDETLKAFFEQFGELVDCVVMKFRDTKRS-----RGFGFXXYAHXDXVDXXXAARPHTIDGAKVETKRATPRED 189

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BLAST of rna-binding protein squid vs. L. salmonis genes
Match: EMLSAG00000012859 (supercontig:LSalAtl2s:LSalAtl2s97:2551958:2563113:1 gene:EMLSAG00000012859 transcript:EMLSAT00000012859 description:"augustus_masked-LSalAtl2s97-processed-gene-25.3")

HSP 1 Score: 63.929 bits (154), Expect = 6.884e-12
Identity = 43/149 (28.86%), Postives = 76/149 (51.01%), Query Frame = 0

Query:   15 KLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKD-EFHNFKNKKVAVKKAASKQGKIYVGKFTANISEDEIKQHFSQY-GNVVEV---QRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTE 158
            ++F G +P++  E+EL   F + GT+  + + MD MTG +RG+AFI + +  +  + +K  + H+    K      +  + ++++G        DEI Q F ++  N+ EV     P D+ KN   + FCF+ +E    A  L K+  E
Sbjct:  198 EVFCGKIPRDLYEDELIPLFEKCGTIWDLRLMMDPMTGLNRGYAFITFTEKGAAQEAMKKLDSHDMGAGKCLKVNVSEPKTRLFIGXIPKCKDRDEIVQEFGKFSANLREVIIYSSPDDKKKN---RGFCFLEYESHKAA-SLAKRRLE 342

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BLAST of rna-binding protein squid vs. SwissProt
Match: gi|55584092|sp|Q08473.3|SQD_DROME (RecName: Full=RNA-binding protein squid; AltName: Full=Heterogeneous nuclear ribonucleoprotein 40; Short=HNRNP 40)

HSP 1 Score: 164.466 bits (415), Expect = 1.032e-47
Identity = 79/163 (48.47%), Postives = 116/163 (71.17%), Query Frame = 0

Query:   11 EDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQGKIYVGKFTANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLK 173
            +DDRKLF GGL  ETTE+EL+++FG++G + S+N+K D  TGRSRGFAFIV+ +  ++DKV   + H   +KKV  KKA ++ GKI+VG  T  IS++EIK +F Q+GN+VEV+ P D+ K ++ K FCF+TF+ +     LLK   + + G+EV++K+ T K
Sbjct:   53 DDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQK-SQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPK 214

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BLAST of rna-binding protein squid vs. SwissProt
Match: gi|765684944|sp|Q9JJ54.2|HNRPD_RAT (RecName: Full=Heterogeneous nuclear ribonucleoprotein D0; Short=hnRNP D0; AltName: Full=AU-rich element RNA-binding protein 1)

HSP 1 Score: 119.398 bits (298), Expect = 1.636e-30
Identity = 59/176 (33.52%), Postives = 110/176 (62.50%), Query Frame = 0

Query:    4 TEMSTVSEDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQG-----KIYVGKFTANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLKQ 174
            TE +T   ++ K+F GGL  +TT+++LK+YF +FG V    +K+D +TGRSRGF F+++++  S+DKV+  + H    K +  K+A + +      KI+VG  + +  E++I+++F  +G V  ++ P+D +K N+ + FCF+TF++++    +++K   NV   + E+K    K+
Sbjct:   85 TEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 259

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BLAST of rna-binding protein squid vs. SwissProt
Match: gi|82233707|sp|Q5ZI72.1|HNRDL_CHICK (RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like; Short=hnRNP D-like; Short=hnRNP DL)

HSP 1 Score: 118.242 bits (295), Expect = 1.891e-30
Identity = 73/224 (32.59%), Postives = 127/224 (56.70%), Query Frame = 0

Query:    7 STVSEDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQG-----KIYVGKFTANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLKQ-----DGGMRGGRGGGG-MRGGMGRGGQGGQGNWGGGYDAWGGYGGGWGDY 219
            S   +DD K+F GGL  +T++++L EY  +FG V    IK D +TGRSRGF F++++D +S++KVL+ + H    K +  K+A + +G     K++VG  + + SE++IK++F  +G +  ++ P+D +K NE + FCF+T+  ++    LL+     +   + E+K    K+         +GG+      RGG    G+G   NW  G++ +  Y  G+G+Y
Sbjct:   23 SKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMD-TKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGKSNASGGRGGGRGRGRGQGQNWNQGFNNY--YDQGYGNY 243

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BLAST of rna-binding protein squid vs. SwissProt
Match: gi|81917948|sp|Q9Z130.1|HNRDL_MOUSE (RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like; Short=hnRNP D-like; Short=hnRNP DL; AltName: Full=JKT41-binding protein)

HSP 1 Score: 117.087 bits (292), Expect = 4.850e-30
Identity = 60/173 (34.68%), Postives = 105/173 (60.69%), Query Frame = 0

Query:    7 STVSEDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQG-----KIYVGKFTANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLKQ 174
            S   +DD K+F GGL  +T++++L EY  +FG V    IK D +TGRSRGF F++++D +S+DKVL+ + H    K +  K+A + +G     K++VG  + + SE++IK++F  +G +  ++ P+D +K NE + FCF+T+  ++    LL+     +   + E+K    K+
Sbjct:   22 SKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMD-TKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 193

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BLAST of rna-binding protein squid vs. SwissProt
Match: gi|13124489|sp|Q14103.1|HNRPD_HUMAN (RecName: Full=Heterogeneous nuclear ribonucleoprotein D0; Short=hnRNP D0; AltName: Full=AU-rich element RNA-binding protein 1)

HSP 1 Score: 117.472 bits (293), Expect = 9.347e-30
Identity = 58/176 (32.95%), Postives = 110/176 (62.50%), Query Frame = 0

Query:    4 TEMSTVSEDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQG-----KIYVGKFTANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLKQ 174
            +E +T   ++ K+F GGL  +TT+++LK+YF +FG V    +K+D +TGRSRGF F+++++  S+DKV+  + H    K +  K+A + +      KI+VG  + +  E++I+++F  +G V  ++ P+D +K N+ + FCF+TF++++    +++K   NV   + E+K    K+
Sbjct:   87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 261

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BLAST of rna-binding protein squid vs. SwissProt
Match: gi|74762096|sp|O14979.3|HNRDL_HUMAN (RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like; Short=hnRNP D-like; Short=hnRNP DL; AltName: Full=AU-rich element RNA-binding factor; AltName: Full=JKT41-binding protein; AltName: Full=Protein laAUF1)

HSP 1 Score: 118.242 bits (295), Expect = 1.520e-29
Identity = 59/169 (34.91%), Postives = 104/169 (61.54%), Query Frame = 0

Query:   11 EDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQG-----KIYVGKFTANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLKQ 174
            +DD K+F GGL  +T++++L EY  +FG V    IK D +TGRSRGF F++++D +S+DKVL+ + H    K +  K+A + +G     K++VG  + + SE++IK++F  +G +  ++ P+D +K NE + FCF+T+  ++    LL+     +   + E+K    K+
Sbjct:  145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMD-TKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312

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BLAST of rna-binding protein squid vs. SwissProt
Match: gi|33516945|sp|Q60668.2|HNRPD_MOUSE (RecName: Full=Heterogeneous nuclear ribonucleoprotein D0; Short=hnRNP D0; AltName: Full=AU-rich element RNA-binding protein 1)

HSP 1 Score: 117.087 bits (292), Expect = 1.568e-29
Identity = 58/176 (32.95%), Postives = 109/176 (61.93%), Query Frame = 0

Query:    4 TEMSTVSEDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQG-----KIYVGKFTANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLKQ 174
            TE +    ++ K+F GGL  +TT+++LK+YF +FG V    +K+D +TGRSRGF F+++++  S+DKV+  + H    K +  K+A + +      KI+VG  + +  E++I+++F  +G V  ++ P+D +K N+ + FCF+TF++++    +++K   NV   + E+K    K+
Sbjct:   87 TEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 261

[Close]

BLAST of rna-binding protein squid vs. SwissProt
Match: gi|82234092|sp|Q640A2.1|HNRDL_XENTR (RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like; Short=hnRNP D-like; Short=hnRNP DL)

HSP 1 Score: 115.546 bits (288), Expect = 2.128e-29
Identity = 59/169 (34.91%), Postives = 102/169 (60.36%), Query Frame = 0

Query:   11 EDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQG-----KIYVGKFTANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLKQ 174
            +D+ K+F GGL  +T++++L EY  +FG V    IK D +TGRSRGF F++++D  S+DKVL+ + H    K +  K+A + +G     K++VG  +   +E++IKQ+F  +G +  ++ P+D +K NE + FCFVT+  ++    LL+     +   + E+K    K+
Sbjct:   23 QDEGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMD-TKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKVAQPKE 190

[Close]

BLAST of rna-binding protein squid vs. SwissProt
Match: gi|123783017|sp|Q3SWU3.1|HNRDL_RAT (RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like; Short=hnRNP D-like; Short=hnRNP DL)

HSP 1 Score: 115.546 bits (288), Expect = 3.193e-29
Identity = 57/165 (34.55%), Postives = 101/165 (61.21%), Query Frame = 0

Query:   15 KLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQG-----KIYVGKFTANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLKQ 174
            K+F GGL  +T++++L EY  +FG V    IK D +TGRSRGF F++++D +S+DKVL+ + H    K +  K+A + +G     K++VG  + + SE++IK++F  +G +  ++ P+D +K NE + FCF+T+  ++    LL+     +   + E+K    K+
Sbjct:   52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMD-TKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 215

[Close]

BLAST of rna-binding protein squid vs. SwissProt
Match: gi|82241529|sp|Q7ZX83.1|HNDLA_XENLA (RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like-A; Short=hnRNP D-like A; Short=hnRNP DL-A)

HSP 1 Score: 114.39 bits (285), Expect = 5.587e-29
Identity = 60/173 (34.68%), Postives = 102/173 (58.96%), Query Frame = 0

Query:    7 STVSEDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQG-----KIYVGKFTANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLKQ 174
            S   +D+ K+F GGL  +T++++L EY  +FG V    IK D +TGRSRGF F++++D  S+DKVL+   H    K +  K+A + +G     K++VG  +   +E++IKQ+F  +G +  ++ P+D +K NE + FCFVT+  ++    LL+     +   + E+K    K+
Sbjct:   19 SKNQQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETNEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPID-TKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKAAQPKE 190

[Close]

BLAST of rna-binding protein squid vs. nr
Match: gi|225712192|gb|ACO11942.1| (RNA-binding protein squid [Lepeophtheirus salmonis])

HSP 1 Score: 231.876 bits (590), Expect = 2.167e-72
Identity = 125/206 (60.68%), Postives = 150/206 (72.82%), Query Frame = 0

Query:   10 SEDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQGKIYVGKFTA-NISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLKQDGGMRGGRGGGGMRGGMGRGGQGGQGNWGGGYDAWGGYGG 214
            SEDDRKLF GGLPQE +E +LKEYF  +G+VTS  +KMD MTGRSRGFAF+V+    SL+ VL+ E H  K KKVA KKA +KQGK+YVGKF   +I+E++IK HFSQYG VVE+QRPVDRSKN+EPKNFCFVTF+K+D A  LLK+    ++GQEVE+KKVT+K +    GG GG G   G       G   WGGGYD   GYG 
Sbjct:   13 SEDDRKLFVGGLPQEASENDLKEYFEAYGSVTSTVLKMDQMTGRSRGFAFVVFATPESLESVLEQE-HVVKGKKVACKKATAKQGKVYVGKFLDGSITEEDIKSHFSQYGTVVEIQRPVDRSKNSEPKNFCFVTFDKEDPAEKLLKEKKVTLNGQEVEIKKVTIKPELSRGGGGGGAGGGRGRNNAPWAGYDPWGGGYDGSWGYGA 217

[Close]

BLAST of rna-binding protein squid vs. nr
Match: gi|1325293551|ref|XP_023330296.1| (RNA-binding protein squid-like isoform X1 [Eurytemora affinis])

HSP 1 Score: 189.889 bits (481), Expect = 8.496e-56
Identity = 88/170 (51.76%), Postives = 127/170 (74.71%), Query Frame = 0

Query:   11 EDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQGKIYVGKFTANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLKQDGGMRG 180
            EDDRKLF GGLPQ+ T+E++ E+F  FG + ++N+K D  +GRSRGFAF++Y+ V SL   ++ + H  KNK+VAVKKA +KQGK+YVG+    +S++EIK HF+ +G +  V++P D++K NE KNFCF+TFEK+D A  LLK GT  ++G E+++K+VT+K D  M G
Sbjct:   30 EDDRKLFVGGLPQDATQEDISEHFATFGEIDNINLKTDPASGRSRGFAFVLYKTVQSLSDAIEAKEHTVKNKEVAVKKAQAKQGKVYVGRLQPELSDEEIKDHFATFGTIANVEQPFDKTK-NERKNFCFITFEKEDAAKQLLKLGTTTINGVELDIKRVTVK-DPVMAG 197

[Close]

BLAST of rna-binding protein squid vs. nr
Match: gi|1325293556|ref|XP_023330297.1| (RNA-binding protein squid-like isoform X2 [Eurytemora affinis])

HSP 1 Score: 189.889 bits (481), Expect = 9.293e-56
Identity = 88/170 (51.76%), Postives = 127/170 (74.71%), Query Frame = 0

Query:   11 EDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQGKIYVGKFTANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLKQDGGMRG 180
            EDDRKLF GGLPQ+ T+E++ E+F  FG + ++N+K D  +GRSRGFAF++Y+ V SL   ++ + H  KNK+VAVKKA +KQGK+YVG+    +S++EIK HF+ +G +  V++P D++K NE KNFCF+TFEK+D A  LLK GT  ++G E+++K+VT+K D  M G
Sbjct:   30 EDDRKLFVGGLPQDATQEDISEHFATFGEIDNINLKTDPASGRSRGFAFVLYKTVQSLSDAIEAKEHTVKNKEVAVKKAQAKQGKVYVGRLQPELSDEEIKDHFATFGTIANVEQPFDKTK-NERKNFCFITFEKEDAAKQLLKLGTTTINGVELDIKRVTVK-DPVMAG 197

[Close]

BLAST of rna-binding protein squid vs. nr
Match: gi|1325289220|ref|XP_023329385.1| (RNA-binding protein squid-like isoform X2 [Eurytemora affinis] >gi|1325289222|ref|XP_023329386.1| RNA-binding protein squid-like isoform X2 [Eurytemora affinis] >gi|1325289224|ref|XP_023329387.1| RNA-binding protein squid-like isoform X2 [Eurytemora affinis])

HSP 1 Score: 189.119 bits (479), Expect = 9.658e-56
Identity = 92/171 (53.80%), Postives = 124/171 (72.51%), Query Frame = 0

Query:    4 TEMSTVSEDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQGKIYVGKFTAN-ISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLK 173
            +E     ED+RKLF GGLPQE  + ++KEYFG FG + +VN+K D  TGRSRGFAF+V++D +SL     DE H  K KKV  KKA ++QGKIYVGK  +  ++ DE+K  F+Q+G V E+ RPVD++ N+ PKNF FVTFEK+D A  L+K+GT +++G EVE+K+VT K
Sbjct:   14 SETPLAPEDERKLFVGGLPQEAKDTDIKEYFGSFGEIENVNLKTDPQTGRSRGFAFVVFKDPASLIAASADESHVIKGKKVTCKKAEARQGKIYVGKLPSEGLTTDEVKDFFAQHGTVSEIVRPVDKTNNDTPKNFAFVTFEKEDVAKQLVKEGTASINGFEVEIKRVTPK 184

[Close]

BLAST of rna-binding protein squid vs. nr
Match: gi|1325289218|ref|XP_023329384.1| (RNA-binding protein squid-like isoform X1 [Eurytemora affinis])

HSP 1 Score: 188.734 bits (478), Expect = 2.104e-55
Identity = 92/171 (53.80%), Postives = 124/171 (72.51%), Query Frame = 0

Query:    4 TEMSTVSEDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQGKIYVGKFTAN-ISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLK 173
            +E     ED+RKLF GGLPQE  + ++KEYFG FG + +VN+K D  TGRSRGFAF+V++D +SL     DE H  K KKV  KKA ++QGKIYVGK  +  ++ DE+K  F+Q+G V E+ RPVD++ N+ PKNF FVTFEK+D A  L+K+GT +++G EVE+K+VT K
Sbjct:   32 SETPLAPEDERKLFVGGLPQEAKDTDIKEYFGSFGEIENVNLKTDPQTGRSRGFAFVVFKDPASLIAASADESHVIKGKKVTCKKAEARQGKIYVGKLPSEGLTTDEVKDFFAQHGTVSEIVRPVDKTNNDTPKNFAFVTFEKEDVAKQLVKEGTASINGFEVEIKRVTPK 202

[Close]

BLAST of rna-binding protein squid vs. nr
Match: gi|1209409|emb|CAA90716.1| (hnRNP protein [Chironomus tentans])

HSP 1 Score: 184.882 bits (468), Expect = 1.333e-53
Identity = 112/237 (47.26%), Postives = 148/237 (62.45%), Query Frame = 0

Query:   11 EDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQGKIYVGKFTANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLKQDGGMR---GGRGGGGMRGGMGRGGQGGQGNWGGGYDAWGGYGGGWGDYGGWGGYHGGGGWGAQ--GGQGGWGG 242
            +DDRKLF GGL  ETTE+EL+++FGQ+G + S+N+K D  TGRSRGFAFIVY+   S+DKV+    H   NKKV  KKA ++ GKI+VG     IS+DEI+ +F+Q+GN+VE++ P D+ K N+ K FCF+TF+ +   N LLK   + + G+EV++KK T K D        G GGG    G   G Q   GNWGG Y + G      G YG  GG    G WG+     QGG+GG
Sbjct:   37 DDDRKLFVGGLSWETTEKELRDHFGQYGEIDSINVKTDPTTGRSRGFAFIVYKSADSIDKVVAAGDHIINNKKVDPKKAKARTGKIFVGGLIPEISDDEIRAYFAQFGNIVEMEMPFDKQK-NQRKAFCFITFDSETVVNELLKTPKQTISGKEVDVKKATPKPDNAPMMNIRGGGGGRNMRGGRGGRQFQGGNWGGNYSSSG------GPYGQSGGSWNQGNWGSNYDNYQGGYGG 266

[Close]

BLAST of rna-binding protein squid vs. nr
Match: gi|961375658|gb|ALS04573.1| (RNA-binding protein squid [Pseudodiaptomus poplesia])

HSP 1 Score: 184.111 bits (466), Expect = 2.607e-53
Identity = 87/167 (52.10%), Postives = 124/167 (74.25%), Query Frame = 0

Query:    6 MSTVSEDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQGKIYVGKFTAN-ISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVT 171
            MS + E+DRKLF GGLPQ+ T++ELKEYFG++G +  V +KMD  TGRSRGFAFI+Y+D+  L+    +E HN + KK+  KKA  K GKIY+GK  ++ +SE++I+ +FS++G V E  RP+D+ KNNEPKNFCFVTFEK+  A  ++ +G  N++G  + +K+VT
Sbjct:    1 MSMIEEEDRKLFCGGLPQDVTQDELKEYFGKYGELERVQLKMDPNTGRSRGFAFILYKDLDGLEAAAAEE-HNIRGKKLTAKKADVKPGKIYLGKLPSDGLSEEDIRGYFSEFGTVSEFVRPIDKMKNNEPKNFCFVTFEKERVAKKMVMQGQCNINGHRLMIKQVT 166

[Close]

BLAST of rna-binding protein squid vs. nr
Match: gi|1133418223|ref|XP_019864610.1| (PREDICTED: RNA-binding protein squid-like [Aethina tumida] >gi|1133418225|ref|XP_019864611.1| PREDICTED: RNA-binding protein squid-like [Aethina tumida])

HSP 1 Score: 180.644 bits (457), Expect = 2.073e-52
Identity = 87/165 (52.73%), Postives = 118/165 (71.52%), Query Frame = 0

Query:    5 EMSTVSEDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQGKIYVGKFTANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKK 169
            E + VS D RKLF GGL QET EE +KEYF Q+GT+ S+N+K DA TG SRGFAFIV+    +LD +L  E HN  NKKV V+KA +KQGK++VG  T  +SED+IK HFSQ+GN+V+ + P D+++ NE K FCF+ FE + T N ++K   + ++  EV++KK
Sbjct:    9 EAAPVSVDKRKLFVGGLSQETKEEHVKEYFSQYGTIESINLKTDAETGNSRGFAFIVFTSADALDSILAVEEHNINNKKVDVQKAKTKQGKLFVGGITPEMSEDDIKNHFSQFGNLVQAEFPFDKTR-NERKKFCFIIFETEQTVNDIVKTRKQTINSVEVDVKK 172

[Close]

BLAST of rna-binding protein squid vs. nr
Match: gi|1325305850|ref|XP_023334541.1| (RNA-binding protein squid-like [Eurytemora affinis])

HSP 1 Score: 180.259 bits (456), Expect = 7.053e-52
Identity = 105/232 (45.26%), Postives = 139/232 (59.91%), Query Frame = 0

Query:    6 MSTVSEDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQGKIYVGKFTAN-ISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLKQDGGMRGGRGGGGMRGGMGRGGQGGQGNWGGGYDAWGGYGGGWGDYGGWGGYHGGGGWGAQGG 236
            M  V E+DRKLF GGLPQE T+++LKEYFG++G +  V +KMD  TGRSRGFAF+++++V SL+   +DE H+ K KK  VKKA  K GKIY+GK   + +SEDEIK   S+YG V E  RP+D+   N PKNFCFVTF+K+  +  L+++G   + G ++ +K+VT                    G  G  G G  GG  D   GYGGGWG   G+    G   WGA   
Sbjct:    3 MMGVDEEDRKLFCGGLPQECTQDDLKEYFGKYGELERVQLKMDPQTGRSRGFAFVLFKEVESLEAASQDE-HSIKGKKATVKKADVKPGKIYLGKLPESGLSEDEIKTFLSEYGTVTEFIRPIDKMNGNAPKNFCFVTFDKERVSKKLIQQGNIVIQGHKLMIKEVTPNPRD------PNSRGGMRGGARGGYGGGYGGGWGDQSAGYGGGWGADQGY----GASAWGADAS 223

[Close]

BLAST of rna-binding protein squid vs. nr
Match: gi|498995856|ref|XP_004533212.1| (RNA-binding protein squid isoform X2 [Ceratitis capitata])

HSP 1 Score: 180.259 bits (456), Expect = 7.420e-52
Identity = 105/222 (47.30%), Postives = 141/222 (63.51%), Query Frame = 0

Query:    7 STVSEDDRKLFAGGLPQETTEEELKEYFGQFGTVTSVNIKMDAMTGRSRGFAFIVYEDVSSLDKVLKDEFHNFKNKKVAVKKAASKQGKIYVGKFTANISEDEIKQHFSQYGNVVEVQRPVDRSKNNEPKNFCFVTFEKDDTANGLLKKGTENVHGQEVELKKVTLKQDGGMRGGRGGGGMRGGMGRGGQGGQGNWGGGYDAWGGYGGGWGDYGGWGGYHGG 228
            S   +DDRKLF GGL  ET+E+EL+E+FG++G + S+N+K D  TGRSRGFAFIV+    ++DKV     H   NKKV  KKA ++ GKI+VG  T  IS+DEIK +FSQ+GN+V+V+ P D+ K+   K FCF+TF+K+D  N LLK   + + G+EV++K+ T K +  M        +RGG G    G  G   GGY  W G GG    Y  +GGY GG
Sbjct:   42 SNARDDDRKLFVGGLSWETSEKELREHFGKYGEIESINVKTDPQTGRSRGFAFIVFTTTEAIDKVHAAGEHIINNKKVDPKKAKARHGKIFVGGLTNEISDDEIKTYFSQFGNIVDVELPFDKQKSQR-KGFCFITFDKEDVVNELLKTPKQKISGKEVDVKRATPKPENQMM------ALRGGRGGIRGGRGGFGRGGYPQWPGQGG----YAPYGGYAGG 252

The following BLAST results are available for this feature:

BLAST of rna-binding protein squid vs. L. salmonis genes
BLAST of rna-binding protein squid vs. SwissProt
BLAST of rna-binding protein squid vs. nr

BLAST of rna-binding protein squid vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 22


Match Name	E-value	Identity	Description
EMLSAG00000008061	1.507e-53	51.92	supercontig:LSalAtl2s:LSalAtl2s47:228294:229145:-1...	[more]
EMLSAG00000012985	5.342e-53	49.51	supercontig:LSalAtl2s:LSalAtl2s98:287705:288759:1 ...	[more]
EMLSAG00000007356	3.602e-40	44.44	supercontig:LSalAtl2s:LSalAtl2s418:127995:128853:-...	[more]
EMLSAG00000007863	5.344e-24	36.72	supercontig:LSalAtl2s:LSalAtl2s460:94042:141135:-1...	[more]
EMLSAG00000006441	8.602e-24	27.05	supercontig:LSalAtl2s:LSalAtl2s351:658541:663148:1...	[more]
EMLSAG00000012034	2.451e-16	31.03	supercontig:LSalAtl2s:LSalAtl2s858:196241:197383:1...	[more]
EMLSAG00000005517	2.648e-15	27.27	supercontig:LSalAtl2s:LSalAtl2s297:281209:289703:-...	[more]
EMLSAG00000005340	2.385e-14	40.96	supercontig:LSalAtl2s:LSalAtl2s287:281236:323990:-...	[more]
EMLSAG00000000160	5.525e-14	25.68	supercontig:LSalAtl2s:LSalAtl2s1025:101799:103083:...	[more]
EMLSAG00000012859	6.884e-12	28.86	supercontig:LSalAtl2s:LSalAtl2s97:2551958:2563113:...	[more]

Pages

BLAST of rna-binding protein squid vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|55584092\|sp\|Q08473.3\|SQD_DROME	1.032e-47	48.47	RecName: Full=RNA-binding protein squid; AltName: ...	[more]
gi\|765684944\|sp\|Q9JJ54.2\|HNRPD_RAT	1.636e-30	33.52	RecName: Full=Heterogeneous nuclear ribonucleoprot...	[more]
gi\|82233707\|sp\|Q5ZI72.1\|HNRDL_CHICK	1.891e-30	32.59	RecName: Full=Heterogeneous nuclear ribonucleoprot...	[more]
gi\|81917948\|sp\|Q9Z130.1\|HNRDL_MOUSE	4.850e-30	34.68	RecName: Full=Heterogeneous nuclear ribonucleoprot...	[more]
gi\|13124489\|sp\|Q14103.1\|HNRPD_HUMAN	9.347e-30	32.95	RecName: Full=Heterogeneous nuclear ribonucleoprot...	[more]
gi\|74762096\|sp\|O14979.3\|HNRDL_HUMAN	1.520e-29	34.91	RecName: Full=Heterogeneous nuclear ribonucleoprot...	[more]
gi\|33516945\|sp\|Q60668.2\|HNRPD_MOUSE	1.568e-29	32.95	RecName: Full=Heterogeneous nuclear ribonucleoprot...	[more]
gi\|82234092\|sp\|Q640A2.1\|HNRDL_XENTR	2.128e-29	34.91	RecName: Full=Heterogeneous nuclear ribonucleoprot...	[more]
gi\|123783017\|sp\|Q3SWU3.1\|HNRDL_RAT	3.193e-29	34.55	RecName: Full=Heterogeneous nuclear ribonucleoprot...	[more]
gi\|82241529\|sp\|Q7ZX83.1\|HNDLA_XENLA	5.587e-29	34.68	RecName: Full=Heterogeneous nuclear ribonucleoprot...	[more]

Pages

BLAST of rna-binding protein squid vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|225712192\|gb\|ACO11942.1\|	2.167e-72	60.68	RNA-binding protein squid [Lepeophtheirus salmonis...	[more]
gi\|1325293551\|ref\|XP_023330296.1\|	8.496e-56	51.76	RNA-binding protein squid-like isoform X1 [Eurytem...	[more]
gi\|1325293556\|ref\|XP_023330297.1\|	9.293e-56	51.76	RNA-binding protein squid-like isoform X2 [Eurytem...	[more]
gi\|1325289220\|ref\|XP_023329385.1\|	9.658e-56	53.80	RNA-binding protein squid-like isoform X2 [Eurytem...	[more]
gi\|1325289218\|ref\|XP_023329384.1\|	2.104e-55	53.80	RNA-binding protein squid-like isoform X1 [Eurytem...	[more]
gi\|1209409\|emb\|CAA90716.1\|	1.333e-53	47.26	hnRNP protein [Chironomus tentans]	[more]
gi\|961375658\|gb\|ALS04573.1\|	2.607e-53	52.10	RNA-binding protein squid [Pseudodiaptomus poplesi...	[more]
gi\|1133418223\|ref\|XP_019864610.1\|	2.073e-52	52.73	PREDICTED: RNA-binding protein squid-like [Aethina...	[more]
gi\|1325305850\|ref\|XP_023334541.1\|	7.053e-52	45.26	RNA-binding protein squid-like [Eurytemora affinis...	[more]
gi\|498995856\|ref\|XP_004533212.1\|	7.420e-52	47.30	RNA-binding protein squid isoform X2 [Ceratitis ca...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold939_size78603	supercontig	scaffold939_size78603:2543..3798 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	F:organic cyclic compound binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold939_size78603-processed-gene-0.3-mRNA-1	snap_masked-scaffold939_size78603-processed-gene-0.3-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold939_size78603:2543..3798-

gene from alignment at scaffold939_size78603:2543..3798-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold939_size78603-processed-gene-0.3 ID=snap_masked-scaffold939_size78603-processed-gene-0.3|Name=rna-binding protein squid|organism=Tigriopus kingsejongensis|type=gene|length=1256bp|location=Sequence derived from alignment at scaffold939_size78603:2543..3798- (Tigriopus kingsejongensis)
ATGGGTGACACGGAAATGTCTACGGTATCGGAGGATGACCGGAAACTGTT
TGCCGGCGGTCTGCCGCAAGAGACGACGGAAGAGGAGCTCAAAGAGTACT
TTGGCCAGTTCGGCACGGTCACATCGGTCAACATCAAGATGGACGCCATG
ACCGGTCGGTCCCGGGGTTTCGCCTTCATCGTGTACGAGGACGTGAGCTC
ACTGGACAAGGTGCTGAAGGACGAGTTTCACAATTTCAAGAACAAGAAAG
TGGCCGTGAAGAAGGCGGCTTCCAAGCAGGGCAAGATCTATGTGGGCAAG
TTCACGGCCAACATCTCCGAAGACGAGATCAAACAGCATTTCAGCCAGTA
CGGAAACGTGGTTGAGGTGCAGCGACCGGTCGACCGCAGCAAGAACAACG
AGCCCAAGAACTTTTGTTTCGTCACCTTTGAAAAGGACGACACGGCCAAC
GGACTGCTCAAGAAAGGCACCGAGAACGTCCACGGCCAGGAGGTCGAACT
CAAGAAGGTCACGCTCAAGCAGGACGGCGGCATGCGCGGCGGCCGAGGCG
GAGGTGGCATGCGCGGTGGCATGGGACGCGGCGGTCAAGGCGGCCAAGGC
AACTGGGGTGGTGGTTACGACGCCTGGGGTGGCTACGGCGGGGGCTGGGG
CGACTACGGCGGCTGGGGTGGCTACCACGGCGGCGGGGGCTGGGGTGCTC
AGGGCGGCCAAGGAGGCTGGGGCGGCTACGGTGCGGGCGGGGGTGGTGGT
GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCTACTAGCCTCCCCCCCCCCCCCCTCACTGT
CCTCTCACGTCGCATCTTCTCCCTCTCTGGCCCCCTTGTCACAAAGAATG
TCCCGCCAGGGGCGGGTCGCGCCTACCCGCCCCTTGTAGTTGTTAGTCTG
AAGGCGACCTGGCTCTAACTATTACCATGCGGAGGGTCCCAGACAACCCC
TCTGAGATTGGCCCCCACCCCCGGATGATGGCCTCTTCGATCCGCACAAG
TATTAA

Synonyms

The feature 'rna-binding protein squid' has the following synonyms


Synonym
Tk11930

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