BlastP was run against all predicted proteins from a selection of genomes (Draft and Complete).
BLASTP 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: selection of arth proteins 185,036 sequences; 84,944,009 total letters blastp -db $2 -query $1 -evalue 1E-6 -num_threads 60 -outfmt 11
Output was re-formatted to XML by blast_formatter.
BlastP versus a selection of arthropod genomes.