Michael Dondrup's blog

[NEWS] Associated RNAi experiments listed for each Tripal Feature


We have added a neat new function: On each chado feature (gene, transcript) we list the RNAi experiments that have been perfomed using this gene or transcript as a target. Here is an example: https://licebase.org/?q=feature/Lepeophtheirus/salmonis/mRNA/EMLSAT00000...

The experiments listed here follow standard access permissions, so make sure you are logged in to see all experiments listed.




Here is an example:


[Update] Scheduled service window 7. - 8. of May.

Update: The scheduled upgrades to the database have been finished with only minor service interruptions (downtime <10 min).

Dear LiceBase users,

There will be a scheduled downtime of LiceBase (all services incl. Blast,
GBrowse) due to an
migration of the database to a new server.

The database upgrade is scheduled 7th of May at 12.00

The service window is as follows:
Monday 7th of may from 12.00
Tuesday 8th of may to 12.00

RNAi form gallery image upload

There is also a slight change in the RNAi upload section. The field Gallery image now also supports direct upload of TIFF images which will be re-scaled and converted to jpeg for display.
This does not substitute uploading the original tiff as separate files because the resolution of gallery images is reduced automatically.

Updated LiceBase Hardware Stack

We have recently updated the LiceBase Hardware and Software stack. Both front-end and database back-end have been moved to
new and more powerful hardware running up-to-date operating systems and software. LiceBase should now be much more performant now.
In the meantime we have also adjusted the branding of GBrowse, so it looks more like LiceBase.

Karl, Wei, and Michael


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