EMLSAT00000000078, EMLSAT00000000078-695925 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000000078
Unique NameEMLSAT00000000078-695925
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s100supercontigLSalAtl2s100:81680..83836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000000078 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000000078EMLSAG00000000078-682844Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000000339EMLSAE00000000339-709267Lepeophtheirus salmonisexon
EMLSAE00000000340EMLSAE00000000340-709268Lepeophtheirus salmonisexon
EMLSAE00000000341EMLSAE00000000341-709269Lepeophtheirus salmonisexon
EMLSAE00000000342EMLSAE00000000342-709270Lepeophtheirus salmonisexon
EMLSAE00000000343EMLSAE00000000343-709271Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto771659auto771659Lepeophtheirus salmonispolypeptide
EMLSAP00000000078EMLSAP00000000078Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000000078

>EMLSAP00000000078 ID=EMLSAP00000000078|Name=EMLSAP00000000078|organism=Lepeophtheirus salmonis|type=polypeptide|length=604bp
KSGPPHPCAVCKVTVEASRPVHSKSYAIQLGLREEDVGSDSRVCNKCHCI
ALRKRHGHCPVPTCTSTKGRGLKVKNRFRHLPSKWAELPDEIKGPIIAEM
LKPXSGISNQSNTDINVKNEEDAKWSDEDVELMKNCLVEFGRNWTHVAEK
IRDKTPDQCKKFFYNNRKKFNLDKIVLDFKRANQSGDQPPVLSTDEESGS
STSSCDEETTYNNVNTTASTSASTVVMHVSSASXSTLIPTTTTTPSGAST
ETSSRPTENDIQVVKSEVKSIENHIKSESGETAPTLPPPPPVVPAKTLIK
EEDNDSSTTMSADEVEINPPRSIYSGQQQPYLLSGQGGVPPNVPGSRDMA
RSYSCRQFQPPPPPSHHHXHXRSXPPPPQPTLNDNSLQNGPVREVMTVRD
LMSNVIERQLSNNQQQHHHSNSSIGGSIANPTIHTILENSGPAPHKTNYI
RDRIGLNPLQKSSTLTGNSMAPPPPPPQLPTMNSNNDCETLDLSMPRRRE
PSPINNNGGPTTSSSSSLQYREPVVIHRSSTSSYSEGNRASPPPAHSGSK
AVTVPDLYRDIGPGSRPPPQVYPPDGVMNRSMSSPHIINRASPRGPPPPS
SSSI
back to top

mRNA from alignment at LSalAtl2s100:81680..83836-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000000078-695925 ID=EMLSAT00000000078-695925|Name=EMLSAT00000000078|organism=Lepeophtheirus salmonis|type=mRNA|length=2157bp|location=Sequence derived from alignment at LSalAtl2s100:81680..83836- (Lepeophtheirus salmonis)
AAATCTGGKCCCCCTCATCCATGTGCAGTGTGTAAAGTAACTGTAGAAGC
CTCAAGACCCGTTCATAGCAAAAGTTATGCAATTCAATTGGGTCTACGAG
AAGAAGATGTAGGCTCGGATTCTAGAGTATGCAATAAATGTCATTGTATT
GCTCTTCGTAAAAGACATGGCCATTGTCCAGTCCCTACTTGCACTTCCAC
GAAGGGAAGGGGCTTAAAAGTTAAAAATAGATTTCGGCATCTCCCTTCTA
AATGGGCTGAACTTCCTGATGAAATCAAAGGACCAATCATTGCTGAAATG
CGTAAGGATATATATATATATTGATTGTATTCTCACGGTTAAATTAATAT
GTAAATATTTTAGAACTCCCGGAAGGAATTAAGAAATGTTGCTCTGGCTG
TGTTACCCGACTTACTCGTAAAATTAGTCAAGCCTCNTTCTGGTATATCT
AATCAAAGCAATACGGACATCAATGTCAAAAATGAGGAAGATGCTAAATG
GAGTGATGAGGATGTTGAATTAATGAAGAACTGCCTTGTAGAATTTGGAA
GGAACTGGACTCATGTTGCTGAAAAAATTCGAGATAAAACTCCAGATCAG
TGCAAAAAGTTCTTCTATAACAACAGGAAAAAATTCAATTTGGATAAAAT
TGTCTTAGATTTCAAAAGGGTAAGACTATCCATACACGGATTGATGGATA
CACTTAAATAATTAATTATATTTAAAAATAATCTTATTTTTACATTAGGC
TAATCAAAGTGGCGATCAACCCCCAGTACTTTCCACAGATGAAGAGTCTG
GCTCATCCACATCTTCTTGTGACGAGGAAACAACTTACAACAACGTAAAT
ACGACAGCCTCTACTTCAGCCTCAACAGTTGTTATGCACGTATCTTCAGC
CTCTKCATCCACTTTAATTCCAACTACTACTACAACACCATCTGGAGCCT
CGACTGAAACATCTAGTCGACCCACAGAAAATGGTATTCATCATATCTTA
CGAGAATATACAAATTATATAGTATATCTTATTATCTATTACTTTCTTAT
TACAGACATTCAAGTAGTCAAAAGCGAAGTTAAATCCATTGAAAATCACA
TTAAATCCGAGTCAGGGGAAACAGCACCAACCCTTCCTCCTCCTCCACCA
GTTGTTCCCGCTAAGACATTAATCAAGGAGGAAGACAATGATAGTTCCAC
TACGGTAAGTTGTGCTGTGACTATATTATGTCTTGTAGGTCATCAAATAA
CGTTTACCTTGTTTTGCAGATGAGTGCTGACGAAGTTGAAATCAATCCAC
CAAGGTCTATATACTCAGGCCAGCAACAACCCTACTTGTTGTCTGGACAG
GGTGGTGTACCACCTAATGTTCCAGGAAGTAGAGATATGGCGCGATCCTA
TTCTTGTCGGCAATTCCAACCACCACCACCACCGAGTCATCATCATCKCC
ATCKCCGATCATTSCCKCCGCCACCACAACCAACATTGAATGATAACTCT
CTTCAAAATGGTCCTGTAAGAGAAGTGATGACTGTTCGTGACTTGATGAG
TAATGTAATTGAGAGGCAACTCTCCAACAACCAGCAACAGCATCATCATA
GTAACTCTTCCATAGGAGGAAGCATTGCCAATCCAACAATTCATACTATT
TTAGAAAATTCAGGACCTGCTCCTCATAAAACCAATTATATTAGAGACCG
GATAGGACTAAATCCCCTTCAAAAAAGCTCTACGCTTACAGGAAATTCCA
TGGCTCCTCCTCCTCCTCCACCACAGCTACCTACCATGAATAGCAACAAT
GATTGTGAGACATTAGATTTGAGTATGCCAAGAAGGAGGGAGCCTAGTCC
TATTAATAATAATGGAGGTCCAACGACCAGCTCCTCCTCCTCTCTACAGT
ACAGAGAACCTGTTGTGATTCATCGTTCTTCAACTTCCTCTTACAGCGAA
GGAAATAGAGCTTCACCGCCTCCTGCTCATTCTGGAAGTAAAGCAGTGAC
AGTGCCGGATCTTTACAGGGATATTGGCCCTGGATCCAGACCACCTCCCC
AAGTGTATCCACCTGATGGAGTAATGAATCGTTCTATGTCCTCTCCTCAT
ATAATCAATCGTGCATCTCCAAGAGGCCCTCCACCCCCCTCTTCCTCCAG
TATCTAA
back to top
Add to Basket