EMLSAT00000000122, EMLSAT00000000122-695969 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000000122
Unique Name	EMLSAT00000000122-695969
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s101	supercontig	LSalAtl2s101:523216..528117 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000000122 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000000122	EMLSAG00000000122-682888	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000000520	EMLSAE00000000520-709448	Lepeophtheirus salmonis	exon
EMLSAE00000000521	EMLSAE00000000521-709449	Lepeophtheirus salmonis	exon
EMLSAE00000000522	EMLSAE00000000522-709450	Lepeophtheirus salmonis	exon
EMLSAE00000000523	EMLSAE00000000523-709451	Lepeophtheirus salmonis	exon
EMLSAE00000000524	EMLSAE00000000524-709452	Lepeophtheirus salmonis	exon
EMLSAE00000000525	EMLSAE00000000525-709453	Lepeophtheirus salmonis	exon
EMLSAE00000000526	EMLSAE00000000526-709454	Lepeophtheirus salmonis	exon
EMLSAE00000000527	EMLSAE00000000527-709455	Lepeophtheirus salmonis	exon
EMLSAE00000000528	EMLSAE00000000528-709456	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto778370	auto778370	Lepeophtheirus salmonis	polypeptide
EMLSAP00000000122	EMLSAP00000000122	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s101:523216..528117+

protein sequence of EMLSAP00000000122

>EMLSAP00000000122 ID=EMLSAP00000000122|Name=EMLSAP00000000122|organism=Lepeophtheirus salmonis|type=polypeptide|length=800bp
MSIVLRKVTALLLKGRHFGTSISKQASPSAKLLVLDNLEFKPEAIIFDKD
GTLVCFHTMWTPWCQSFANRMNDVSGLDLACNLFEVLGYDQANSKVKLGS
LAENTHPQLKEKVKEMLTNHPQVLCEFKAKEYLNQSWRDTPDNMDIKLTG
NLHDLFMRLRSQGIHIAICTSDSRSGTEEFLDKENLGSLVDIVVCGDDSF
SKPKPDPHNAIFICNKLNIDPSKTVMVGDXPADTIMGQAAGLGLTVGXLS
GVGSAKDLMDADIIVDDVKDYCISNSIFLLEAGPKDTFLGSCYLQWKIHM
PAALMYNLCDDKYNWYYNTLPQKHMNNRSMYWPRGRVWGGSSSLNAMVYI
RGHAEDQNRWESEGAEGWNYQNCLPYFKKAQTHEWGPSAYRGGNGPLHVS
RGTSNNSLHSVWLEAGQQAGYPFTDDVNGYQQEGMSQFEMTIKKGMRNST
ASAYLRPALSRPNLTTEVGALVTRILFDGKRAIGIEYLRNGKELKRVYAD
EVILSGGSINSPQLLMLSGVGPAQHLKEMDIPLVADIQGVGQNLQDHLEV
YVVQECKKPITLLKDQKGLRMIQVGLQWFYNQTGSASTTHLESGGFVRSR
PDVSHPNIMFHFLPSQVIDHGRQSPKIEAYQVHVGPMRSSSRGWIQLKSN
DPRDHPIIQPNYLSTDFDVHEMRESVRLSRNIFAQPAFDPYRGIEIAPGH
ELTSDKDIDAFIRDKADSAYHPSCTCKMGSTSDNMTVVDPCTRVVGLEGL
RVVDASIMPSIASGNLNAPTIMIAERAADIIKGDGVLPPAQVPVYSPPRN

mRNA from alignment at LSalAtl2s101:523216..528117+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000000122-695969 ID=EMLSAT00000000122-695969|Name=EMLSAT00000000122|organism=Lepeophtheirus salmonis|type=mRNA|length=4902bp|location=Sequence derived from alignment at LSalAtl2s101:523216..528117+ (Lepeophtheirus salmonis)
ATTTCATGGTAACTATTTAATGCAATAATATAATTAATAACAGGTGAAAT
TATTTCCACTCTCAAATAAATATATAGTACCCAATTAATATAATATTTTT
CTCATAAAAACGATTTGTACTCGCTCCCTCCAGATGTGAGCTATAAATAA
ATACACAAAACAAGAAAAAAAATCTTGAAAAAGGATAAATAATAAATTTC
CAGCCGTACTCAGCTTCTCRCCCCCCCCCCCTTTCTCTGTCCATGTTGTT
ATTATATATTATTTCTGCAACATAAAATCTTCTTGTCAGTTGTTCTCGTA
ATGACAATTGATGTTGACACTGTAGTTTAGTTCCCCAAGAGTGCAAGATG
TCGATTGTTTTAAGAAAGGTTACTGCTCTCTTATTAAAAGGTATTTATAC
ATTTATTCATTGTTCAGGAATAAAGGATTTTTATATTGGTAGGTCGACAC
TTTGGTACCTCAATTTCGAAGCAAGCATCCCCCTCTGCTAAATTGTTAGT
ATTGGATAACCTTGAGTTTAAACCAGAGGCAATTATATTCGATAAAGATG
GAACATTGGTTTGTTTCCATACGATGTGGACTCCTTGGTGCCAGAGTTTT
GCCAACAGGTTATTTTTTAGTATACTCATTTTAAAATATGATTAATATGT
ACTAGTACATTGCAGAATGAACGATGTTTCTGGACTAGATCTTGCTTGTA
ATCTCTTTGAGGTATTAGGATATGATCAAGCAAATTCCAAAGTAAAACTT
GGATCTTTAGCTGAAAATACTCATCCACAATTAAAGGAGAAAGTTAAAGA
AATGTTAACTAATCATCCTCAAGTGTTGTGTGAGTTTAAAGCTAAAGAGT
ATTTGAATCAGTCTTGGAGGGATACTCCTGATAATATGGATATAAAGCTC
ACAGGAAATCTTCACGATTTGTTTATGAGGTTAGTAAATTTCTGCATCTA
TTAGATTGGGTGTCACTGTCAAAGCACCATTTAATCTTTCATATTTTAGA
TTAAGGAGTCAAGGAATCCATATTGCAATCTGCACTTCTGATTCCCGCTC
TGGGACAGAAGAATTCCTTGATAAGGAGAATTTGGGTTCACTTGTGGATA
TCGTTGTTTGTGGAGATGATTCATTTTCTAAACCAAAACCGGATCCTCAT
AATGCCATATTTATTTGTAACAAACTAAATATCGACCCCTCAAAAACCGT
TATGGTTGGGGATKCCCCTGCTGACACAATTATGGGACAAGCTGCAGGCT
TAGGACTTACAGTGGGAGMACTGAGTGGTGTAGGGTCAGCCAAAGATTTG
ATGGATGCAGATATTATTGTGGATGATGTCAAGGACTGTGTTGATTTATT
TTTACCACATGATCCCGATAAAGTTGAGACCCATCGAGTTACTTCGAGGG
GCCTATTCAAAATAGCTTCCAAAGGAAATTTTTCACAGCCAAGAGGTTCC
AGAGGGCTCTCTACCTATAGTCATATCGTTGTTGGTGCTGGATCCGCGGG
TTGTGTTTTATCAAATCGACTCACTGAAAAGAGGCAATGATTTAATATTA
TACTTATTAAAAACGTTTTCATAAAATATGTATATTGAGAACTCATGTTT
AAATTTGTTGCAAATTAGCAAATTTGATGGTTTTTTCTCCTTGTATCATG
GAGCTCTAAAGTACTTATAGTTTTAATTTTGTATCAAAATTAGTACTATT
GTTAAATAATAGTCAATACTACTTCTTCTTTTCTTTTTCTTTTTTGAAAA
AAAAATAATTATTATATGAAGAAACACAAACTGTACATTATTTCAGTTAA
TTATTGAATAAAACATTTTTTATAGAGACTATTTTTTTAATTCAAGATTG
CATGTTATTATATTATATTCAGACTCCATTCCCCTCCCCTATTTCTATTT
ATCTAGTCATTCATTATATCAATTCTCAAGATGGAATTCATCCATTTTTT
CGTWTGAAWGTATGCRATAGTATGGTTTTTTATAGCATGTATTACACGCT
TAACAGATTTTAAAAACGCTTGCTCAACNTTTGCATGAACTAGGATTTAC
TGTTAATACTTTGTAATTACTTTTTTGATAACACGAAACATTAATTCATT
TCTGAATACTACGTACTTCTTTGCTCTCTGACTATGAGCTCATTCTCTTG
AGAAATTAAGCTCTTAGTAGAAAACACTATATATTAATAATTATTTATGG
ATGTCAATGTGAACAAAGTTCATAGATGAGAGAATTTCATACTTTAACCC
ATTTTTTTTATAGTTCAAACTCTATCTTTCTATTGGAAGCGGGTCCCAAG
GATACTTTTTTAGGATCATGTTATCTTCAATGGAAGATTCACATGCCTGC
AGCCCTGATGTACAATCTGTGTGATGATAAATACAATTGGTACTATAATA
CTCTTCCTCAAAAACACATGAATAATCGATCTATGTACTGGCCTCGAGGT
CGTGTATGGGGAGGATCTAGCTCTCTTAATGCAATGGTCTATATACGTGG
TCATGCAGAAGATCAAAATCGTTGGGAGTCTGAGGGTGCAGAAGGATGGA
ACTACCAAAATTGTCTTCCTTATTTCAAGAAAGCCCAAACACATGAGTGG
GGTCCTAGTGCTTATAGAGGAGGGAATGGGCCCCTCCATGTTAGCCGTGG
TACTTCGAATAATTCACTTCATTCCGTGTGGTTAGAGGCTGGACAACAAG
CTGGATATCCCTTTACAGATGATGTCAACGGATACCAACAGGAAGGAATG
TCCCAATTTGAAATGACTATTAAGAAGGGAATGCGGAATAGCACGGCAAG
TGCTTATTTGAGGCCCGCTCTAAGTCGACCCAATCTGACTACAGAGGTTG
GTGCTCTAGTCACACGTATATTATTTGATGGGAAAAGAGCCATTGGGATA
GAGTATCTTAGAAATGGAAAGGAGTTGAAGAGGGTATATGCAGATGAAGT
TATTCTCAGTGGAGGATCTATCAATTCACCTCAACTCCTCATGCTCTCCG
GCGTTGGTCCAGCACAACACTTGAAAGAAATGGATATTCCACTTGTGGCC
GATATTCAAGGTGTGGGACAGAACCTTCAGGATCATTTAGAAGTCTATGT
TGTTCAGGAATGCAAAAAGCCTATTACATTACTTAAGGATCAAAAAGGCT
TGCGCATGATTCAAGTAGGATTACAATGGTTCTATAATCAAACAGGAAGT
GCATCAACGACCCATTTAGAATCTGGAGGCTTTGTAAGATCAAGACCCGA
TGTATCTCACCCTAATATTATGTTTCATTTCTTACCGAGTCAAGTAATTG
ATCATGGACGACAATCCCCTAAGATCGAAGCATATCAAGTAGAATTTTTT
TAATACCATTTTGTGTTATTTTTGTTTTGTTACAATGTTTTAATTTATGC
TAGGTTCATGTTGGTCCCATGAGAAGTTCTTCAAGAGGTTGGATACAATT
GAAGAGTAATGATCCCAGGGATCATCCTATCATTCAACCCAACTATCTAT
CTACGGGTAAGTGAATCTTCAATTTGTAGGGAGTTAATCCAATGTACAAA
TGAGTGTATATTAGTATTTTACATCATGATTGATACTTGGTTTCCGTTCT
TTTAGATGACAATCAAAGGGTTATTTTGAAATGGGTATGATAATAATATG
TTTTTTTTTACAAAATTGAATACCCGCATTTGATCATCGCAATTGCTTTT
TATTCCTTAATTCACCTTTGTATTTCTTAAATGCTTCATGTTTTCCTTGA
ATAAGACTAGAATCTTTATATAAATATACATACCTCCATAGGTACATACA
TATATGAGTGACTAAGTAAACCAGGTTCTCAATTGTGTTAAAAACTCGTT
CTTGTTTGTGGAATGCAAAAAGTAAAAATAAATCCACAATCATGGATAGT
ATTAATTTATCCAAAAATAAATAAAGATGAATCAACTCATTATATCCCCA
TGTCACTCATTAACATCTTTAGGGGTATAATGAGTCATTATTAATAAGTC
ATACATGTCATAAAACAAAATTATTACTGAGAAAATTCGTATTGGTTGAA
AAAGGCTTTCAGGCAGCCCCAGCAAATATTTTCCCCTCCATCGACGATGG
AGTCTTAAATAATATCAATCTATTCCATCGGGGAATAAAATATCCATGAA
TGAGAAAAGTTTATGTATTTCGTAAAAATATTGATGGATTTATTTAATAT
TGCTATTGCGTAGTATTGATCGATAGATCTAAAGCAATTATGTACATAAG
GAGATATTGAGCAATTCTAATTTAACTGAGGTACTAAAGATCATTAAAAG
TTTAATAATAATCATATTTTCGCTTTCAGATTTTGACGTACATGAAATGC
GAGAGTCTGTGAGGCTAAGTCGAAATATTTTTGCTCAGCCTGCCTTTGAT
CCCTATCGAGGAATTGAAATTGCTCCAGGACACGAGTTAACCTCAGATAA
GGACATTGATGCATTTATTCGAGACAAGGCTGACTCTGCTTACCATCCCT
CATGTACCTGCAAAATGGGATCAACTTCTGACAACATGACTGTGGTAGAT
CCCTGCACCAGAGTGGTTGGACTCGAAGGACTCCGTGTTGTGGATGCCTC
TATTATGCCGAGTATTGCAAGTGGGAATCTGAATGCACCAACAATCATGA
TTGCTGAGAGAGCTGCTGATATTATTAAAGGAGACGGAGTTCTCCCTCCT
GCTCAGGTCCCTGTTTACTCCCCACCTCGAAACTAAATGTAGGAAATAAT
AGGATATGTTTTTGTAAATGTGTACATGCAGTAGGAGCGCGGTAAAAGAA
TAAGAAAAAAGGTGGAACAAGTCAGTTTGGAATTGATAAATATCTATCTA
TATATTTTTTATAATATTCATAATAATTTTTATAATTTGTGTAACAATAA
CC

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