EMLSAT00000000386, EMLSAT00000000386-696233 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000000386
Unique NameEMLSAT00000000386-696233
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1060supercontigLSalAtl2s1060:22308..23429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000000386 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000000386EMLSAG00000000386-683152Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000001740EMLSAE00000001740-710668Lepeophtheirus salmonisexon
EMLSAE00000001741EMLSAE00000001741-710669Lepeophtheirus salmonisexon
EMLSAE00000001742EMLSAE00000001742-710670Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto769539auto769539Lepeophtheirus salmonispolypeptide
EMLSAP00000000386EMLSAP00000000386Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000000386

>EMLSAP00000000386 ID=EMLSAP00000000386|Name=EMLSAP00000000386|organism=Lepeophtheirus salmonis|type=polypeptide|length=323bp
MNMCRGDELFAMEGXLALTNVDNLVLTEAKSYEDPVLISDVRILSNILLR
EKDAQKSPKENYFECVQTEVKPHMRKIVTDWMLEVCEDQKCQAEVFSLAV
NYLDGFLAKINIQKSQFQLLATVCIFVASKFKETAPVPAENLVIYTDNSV
SILEITQWELILLNVLEWDLSAVTPYGILDHLLRTLNIESSSSETIRRHA
ETFVALXATEFVFXQHGPAAVAVSCLGAALRGLNVSTLSSVLEHLHYTTG
VNTITIKDCMDQIEESISMSMSGLSFQPSSSSPAAPSSKSNNVSAPKIIP
QHYNGSKFVSTTPTDVMDVACAF
back to top

mRNA from alignment at LSalAtl2s1060:22308..23429-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000000386-696233 ID=EMLSAT00000000386-696233|Name=EMLSAT00000000386|organism=Lepeophtheirus salmonis|type=mRNA|length=1122bp|location=Sequence derived from alignment at LSalAtl2s1060:22308..23429- (Lepeophtheirus salmonis)
ATGAACATGTGCCGTGGTGATGAATTATTTGCCATGGAAGGSGRACTTGC
TCTTACTAATGTGGATAACTTGGTGCTCACTGAGGCCAAGTCATATGAAG
ATCCCGTACTCATCTCAGACGTTAGAATCCTCTCAAACATTCTCCTCAGA
GAAAAAGATGCCCAAAAGTCTCCTAAGGAGAACTACTTTGAGTGTGTCCA
AACAGAAGTGAAACCTCATATGAGGAAAATCGTCACTGACTGGATGCTGG
AAGTGTGTGAGGATCAAAAGTGTCAAGCTGAGGTTTTCTCTCTGGCAGTA
AACTACTTGGATGGTTTCCTAGCTAAAATAAACATCCAAAAGTCTCAATT
CCAACTTCTTGCCACAGTTTGTATCTTTGTGGCCTCCAAGTTCAAGGAGA
CTGCCCCTGTTCCAGCTGAAAACCTCGTCATCTATACAGATAACTCTGTT
AGCATTCTTGAGATCACGGTAAGTCAATCAGAAATGAGACCCTTATCTTG
TTGTCATGATAGAATAGAGACTTAATTATTATTTGTTCTTTCAGCAATGG
GAACTTATTTTGCTCAATGTTCTCGAATGGGATCTCTCTGCCGTTACGCC
CTATGGAATCCTTGATCATCTTCTCCGTACATTAAACATTGAATCCTCCT
CATCAGAGACCATTCGACGACATGCAGAGACCTTTGTGGCTCTCMCAGCC
ACTGAATTCGTCTTTTMCCAACATGGMCCTGCTGCCGTTGCTGTCTCATG
TCTCGGAGCTGCTCTCCGAGGACTCAACGTATCCACTCTTTCCTCTGTGC
TTGAGCACCTTCACTACACTACCGGAGTCAACACTGTAAGTTCAAACACA
TCCCTCCCTATTTTTGAATTACAAATAATGATCAACTCTTTTTTTCTTAA
TCATTTTAGATCACAATTAAAGACTGCATGGACCAAATTGAAGAGTCAAT
TTCCATGAGTATGAGTGGCTTGAGCTTTCAACCCTCTTCCTCTTCTCCAG
CAGCACCTTCCTCCAAATCCAACAATGTCTCAGCTCCTAAAATCATACCT
CAACATTACAACGGCTCCAAATTTGTATCAACAACGCCTACCGATGTCAT
GGACGTGGCCTGTGCCTTTTAA
back to top
Add to Basket