EMLSAT00000001343, EMLSAT00000001343-697190 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000001343
Unique Name	EMLSAT00000001343-697190
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s1228	supercontig	LSalAtl2s1228:10227..15910 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000001343 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000001343	EMLSAG00000001343-684109	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000005852	EMLSAE00000005852-714780	Lepeophtheirus salmonis	exon
EMLSAE00000005853	EMLSAE00000005853-714781	Lepeophtheirus salmonis	exon
EMLSAE00000005854	EMLSAE00000005854-714782	Lepeophtheirus salmonis	exon
EMLSAE00000005855	EMLSAE00000005855-714783	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto769173	auto769173	Lepeophtheirus salmonis	polypeptide
EMLSAP00000001343	EMLSAP00000001343	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s1228:10227..15910+

protein sequence of EMLSAP00000001343

>EMLSAP00000001343 ID=EMLSAP00000001343|Name=EMLSAP00000001343|organism=Lepeophtheirus salmonis|type=polypeptide|length=149bp
MSSEEVIVELSVLSQKDKELCLKSMEMRSEAYCPYSKFSVGAALRCADES
IVAGCNVENASYGLSICAERTAIVSAVASGKKEFTSIAISADLQNDEFAS
PCGACRQFMAEFDPKLPIFLVRHDSKVLITNLERLLPNAFSPQNTDLPF

mRNA from alignment at LSalAtl2s1228:10227..15910+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000001343-697190 ID=EMLSAT00000001343-697190|Name=EMLSAT00000001343|organism=Lepeophtheirus salmonis|type=mRNA|length=5684bp|location=Sequence derived from alignment at LSalAtl2s1228:10227..15910+ (Lepeophtheirus salmonis)
AAAAAAGCGAGTCATGATGGTCTATTATAAAGTCCCAGAAAAAAGACAGT
ATTTAATAAAATTATGTAACTAAGTGTCTGTTGTTTTATACTTATTTTTA
TGGTTGAGTTATAAATTATATTAATTGTAAGTATAAATTATATTAATATT
CATGGAGCGTTTTCAATTATTTCTTAAATTTCATAATAATTGAAGGAGAG
TCCTTCTTGGGACTCATAGTTGTTATTTTTACTACACAAAATGAACAAAT
TTCCAACAAATTGTAAGAAAACTTCATCAAATGACTTTAAGTATTAAAAA
AACAACTAATACCTTGATTGAACTCTACTTGATACCTATGATAAACAGTG
ATATTTGAATTAAATCAAATTAATAAGTACTGAAAATTCCTTTAAAATGT
CTAAATTTGTAAGGGAAAAAAAAGGTGGTCGATTAAGTAAGACTAGATAA
TTACAGAAAAATATGTTATTCTTTCCATTGTAATTCTTAATTTATTATCT
AAAATACATAAATAAAATTGTATAACGATGTAATAACATATTTTTAATAG
ATATTAGGGTTATATATTATATAATCAAATTAGGCATGAGATGTAAACAT
TTTTGATAGACAATAAGGTTTAAGTCGTTTTATTTTTTGGTGCAATGAAT
ACTAAAACAATTTGTTTATCTAGACACTACTAGATACAACTTTCAAATCC
AGTAGTTTACTATTTTCCTTAATATTAATGAAAAATAGGTTTTATTGTTA
TATAACTTGGTTGTTTAGGTCCCCAAAATGGCGGGCATCAACAATGCTGA
CGTGACATGAAAATGCTCTCCAACCTCACAAGGCTTTTTCCACCCACTTT
TTTTTTGCTCTCTGGACAGTATGTTGGGAAACCACGAGATCTTTTACATG
GGCCAAATGTTATAACTTCCCAAACTTTCATTATTTGATTGATTGTTATA
TATAGTACATTTATAGCTGATAAGTTTTAATGGAACCCTGAATCCATAAC
TGGATTTTATTAACACAGTGAAGGTAAAACTTGATGGAGTTATGGGTTAT
AATAATTATAAAAATATATAAATCCATATAGCATGGGATCATTTTAATCA
TAATCAGGCTAGGAGATTGAGTGGAAAATGAGCCCTGTTCATGCGTTCCG
TTTATTTTTTTATCACTTTCCTATTGTTGTCGAAATACATTAATACTGCA
GGAGCAAATCTAAAACTAAGTAGGGAAATGACGACCACGTTGCTAACTTT
ATTTCCTAATTTAGTTGGCTACGATAATACTTTTGTACATAAGGGGCGCT
GAGGGTATCGTGAACTACTCTTTAACACGTCGTTACCTTGATCAAATCAC
GCMCCCTTTTATACGGGGGGGGGGGTGGACAGAAAAAGCCCCAAAATCAG
TTAGTAATTAGACAATTCTTCAAAACTATGGAATTATAATTTAATAAATT
TTGGAAGGGTGTTCACAGATTTACAAGACATAAATATTATTCAACCAAAC
CGTTCAGAGCACAGATTAAAGGAAAAGAAACAGAAACATCGACAGCTGAC
CAAAAAAAAAATGTGTTAGTAAGGTAACGGAAAGATAATCAATTACGGAT
AAAAATTGGATACTTCACGAAGAAAAATGATAAAATAACGTCATCTGCAT
TTCTTAAAAAGTGAACTCTCACTGCGGGAAATTTTTTTTTTCGTAGCCAA
CTAAATTCAAACAAAAATTGGTCACCTGATCGTCATTTCATTGACTGAAT
TAAATCTATTTTTCATATTATATCAATTGATATTTATGATTATCTATAAA
ATATTTTCTATCATAATTTATAAAATATCATTAAGCTTCATTAAGCCAGA
CTCGAAAATCTGAAGATAATTATACACCACTTGGTAAATGCAATTGCAAT
CATATCGTATAAAAGTCCACAAAATATATGTTTACAAAAAATACCTTGTT
TAGTCTGAATCTGGATTTTACTTAATATTATAGTTTTCGATATCAACACC
CTTTAAGAAAAATAAGAATTAACCAATTACATGCAAAACTTATAATAGAT
TGGTAGCTCATAGCACTGTAGATATTATCTAATCCAGTTACAGTCCCTCC
AGCCCACCCCCTACGGACACCTCTGGCATTGCTATGTTTAATAACACGTC
TTTGTTATATTAGAAAATGGCTATAATTTGAAAATGCAGCTGAACAAGTT
AGAGCTTGTCTAGACGCCATTTAGTTAACTATTCTATTATTATTATTGGT
TGTACATATACATAAATTTGAGGATCTTTTTTTGTTAGCAAGGTATCCCG
CTAACACAAAAAAACCCTATGTATTTTATTGTCAGCTGTCGATTCCCTCT
TCTCCGTTTATATGTCACGCCCTTATCATAATTTATTCTTTTTCATAAAT
ACACACATTAAAAAGTTATTTTACCCTTATGCTCCGTTTCCAAAAAAACA
GGAATACAATTTCTTGTTGATCCCTCGTCGTTTATATAGTATATATATTG
GCCATTTTATTATTTCTATGAAATTTTTTTGGCTATTTCTTCAGAGAAAT
AATATAATAACTTATCATAACTATTCTTTTAATGAAATATTACTAAGCAA
TATTATAATACAGTATCAAATCAAATACTATGTAGATTTTAATAATATGT
AATTTATTTTAAACAGGGTAAATAAATAATACAAAAGTGATGGTTTGCGA
ATATATAAAATATAAATAGCGGTTGGTATGATTAACTTATTTAGCTAACT
ACCAGATGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAA
AAGCAGTTTATATTTTTGGATACAATTTTCATTATCGGTCTTTATTCCTA
AAAATCATTTCATAATTCAGTTATTTGCTTTCTGCGTTACAGTGCGTTAA
AAGTTAGATATTTTCTTATACCAACCATATTTATTAACTGTTGTATTGAT
AATCAATTAATTAATAGTTAGAGTCAAGATCTTCTACCATTCCTATTGAT
TTTTGTACTCTATAATATTTACCGGTAAGATCAGTTCAAATATACATTTT
AAAATAAAAATTTTTTTAATGTTTGCTTTAACGAATGATTAATTTAAGTA
ATAGTAGTCCTCTTATACATTAATTATCATCTAATTGCCCATTTAAAGCT
TTAAACCAAGTAACGAAACGAGGACCCACATAATCAATAGCTGAAAAATG
ACCTGGTGCACAAAAACTTTTTTTGTGCACTAGAGGCACTGTTTAATTAT
TATAGGATAGGAATTATCAGGTTATCTAATATCTTATACTTTTTAGAAGT
TGTTCATTCGAGTCCGGAAGACGGAATAAGCTGAGGTAGTGAAGATTTTT
TAATATGGAGGTTTTTTTAACCCACTATTTTGTTTATTCGAGTTCATAGA
TGATGATGTTTATTCTCCATTATTTTTTCATTTATCATTAATGTAAGAAT
ATATCTTTTATTATTAATCTATGGAGTCCAATTTCCCATCTCTGACAATA
AATGACCATTGTTTCTTAAATAATACATTTATTATTATTCTAATAACAAT
GAATACGTAAAAATGTATATTTATCTTTGGTGGGAAATTCAAAATAGGAA
AAATCAAAGAATAAATTAATTTATTCTTTCTCCTCAGCAATTCTTAAGTG
TGAGGCGTGCTTCATCATTCATCCCTCTTAATTATAATAGTCTTATATAA
ATTGCAGTCAATGACTCCTTAGGAAGTAAGAAAAATAACAGAGTGACTTC
ATATGAAAAGCGACATCTTCCGAAAAATGTTAAAATGCTCCACCATTGTA
TTGTATCTAGTTCCTCACATTCGCGTTTCGTTAAATTATTTTAATTCTTT
ATACCCGCCTAACTTTTCAAAAAGTTAAATTTTTAAATTATTACTAAATA
TAACTCAAGACAAGTTTTATTTTAAACACGAAAAACGCATTACATGCTAA
TTTGCTATATTAGAGTTTTTTCCATTAAGTCTGAGAGTCTCAATAAGATT
AAATGTGTGAGTTTGATTTTACATAAGGATATTAAAAAATGTATATCAAT
GTCAATTAACCAAGTTATATATTTCCACATCTAAATTATATATAATCTGT
AATTTACCTGTATGTAAGTATACAAAATAGGTTCCGTGTTTTAAGAAAAA
ATACATATGATATATTGTAGGTACTACGGTGTGTACCGCTTAGCTTAAAC
TAGCTATTTCAAAAAGAGCAAGGCCGCTTCAATTTTTTATGCATATATAT
CTATTGTAGATAAATATATACTGACATCACCCAATAGATTATATGTATAT
TGAGTATTCTTATTAATATTCCCAGAATAAAGATACTCTAAAAAGTAGTA
CTATTAACAGATGGAATTTGGATATATAAATAATTCATTTCTGTCATTTT
TTATTACAGATTTACCAATAATATGTCGTCAGAAGAAGTGATTGTCGAAC
TATCAGTATTATCCCAAAAGGATAAAGAACTTTGTTTGAAAAGTATGGAG
ATGAGGAGTGAAGCATACTGTCCATATAGCAAATTCTCTGTGGGTGCTGC
TTTGAGATGTGCCGATGAATCTATCGTAGCGGGATGTAATGTTGAGAATG
CATCATATGGATTGAGTATTTGCGCCGAAAGAACCGCAATCGTTAGCGCA
GTGGCATCTGTACGTATATAAAAAGACATTTATCTTCCTAGTTGGATTAA
TAAATATAAATAAAATAATAATTTTATAATAAATATAGATTATAAGTTAT
ATTAAGAAGTTGTTAAATATTTATGTCTTTTTTAATTACCAATTAATTTC
CTCAGGGAAAAAAGGAATTCACAAGTATCGCGATCTCAGCAGATCTTCAA
AACGATGAATTTGCTTCACCTTGTGGTGCATGTCGGCAATTTATGGCAGA
ATTTGACCCAAAGTTACCCATATTCCTTGTTCGTCATGATAGCAAGGTTT
TAATAACTAATTTGGAGAGATTGCTTCCTAACGCCTTCAGCCCACAGAAC
ACTGATTTACCGTTTTAATGAATAGACCATATATATAATTAACTATGATG
TATCTAAATGCATAAATGTTAACTCCTTGTATTCATTTTACTTAATTTAA
CAAAATTGCAAAATATAAAACGTATACTAGAACAATCAATAATCATTATT
TATAATTCAATAAACTGCTATACATACAATTAAA

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