EMLSAT00000001886, EMLSAT00000001886-697733 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000001886
Unique Name	EMLSAT00000001886-697733
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s1324	supercontig	LSalAtl2s1324:61879..66587 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000001886 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000001886	EMLSAG00000001886-684652	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000008296	EMLSAE00000008296-717224	Lepeophtheirus salmonis	exon
EMLSAE00000008297	EMLSAE00000008297-717225	Lepeophtheirus salmonis	exon
EMLSAE00000008298	EMLSAE00000008298-717226	Lepeophtheirus salmonis	exon
EMLSAE00000008299	EMLSAE00000008299-717227	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto771094	auto771094	Lepeophtheirus salmonis	polypeptide
EMLSAP00000001886	EMLSAP00000001886	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s1324:61879..66587+

protein sequence of EMLSAP00000001886

>EMLSAP00000001886 ID=EMLSAP00000001886|Name=EMLSAP00000001886|organism=Lepeophtheirus salmonis|type=polypeptide|length=159bp
MSIFTEFSEVTKDLYLSSAFAIKDEVLKEHDIYLVINATKELPLWPPSGP
PVFDVIRVPLVDSSIQDAYKYFEDVSNLIKKHSEDSKKTLIHCAAGVSRS
ACLAVAYLMRHHNMPLEEALTKLKMVRPAVKPNNGFVHQLTRWXDECNKL
RAGDERIEH

mRNA from alignment at LSalAtl2s1324:61879..66587+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000001886-697733 ID=EMLSAT00000001886-697733|Name=EMLSAT00000001886|organism=Lepeophtheirus salmonis|type=mRNA|length=4709bp|location=Sequence derived from alignment at LSalAtl2s1324:61879..66587+ (Lepeophtheirus salmonis)
TCCAAAGATATGCTCGCCGGGAAGTCGTTTGATACTATTACAGGCATACT
TTTTTTACGCAGGTTTTTACAACTATTACATATTTCGTTGTTGATAGAAA
AAATATTTTTCTTTCATAATTTTAGTTTTTATCGAAGATTTGCGCAAGGA
TCATTCAAGACAAATTAACCCTTCAAATCACACAAAAAGGTAGGTAACTA
ACATCGTTTTATACATTAGTTACCCATGATATGCTAGGCATTTACATATC
GGAAGTAAAAAGGGCGTGGAATAACAAGGTAGATCAGGCCTTTCAATAAT
ATTTCCTTTCATAGTATTAGATAAAGTTAAGTAACATACTAGGATTTAGA
CTTGCGTTCTTGACTTGAATACCAGTCCGAATTTTGAATGCTTGCTACTC
GAATTGAACACAAAATCAATGACTCGAGACTTGATTTGGACTCAAGTCCA
TATTTTGAAGCCATACAACTGGGCTAAATTACACGAAATAACATTTGACA
TATGATTTGAACTCGAAAACTAAGACTTGTGGTTGGACTTGCACTCGAAA
GTCATCTCAATTTGTCACGGGATATTATATACTCTTTAAGGATTCTTTTA
TTTTCTGAGAACTTGAACTGGAAATAATGGAAATATTAAAGATTTCAGAT
TTCAGATTACTCTTAAAACTAGCCTCAACCATGAGTCATTCATAATTGCT
CAAATTAACCCGCCCTCCACAAATAATAAATTATAAATAAAACCTTAATT
AGATTTATTCTTGTTTTAATTTTGACCTTTTTTTAAATTTTACATTTTTT
GAAAGTCGATATTGAACTGTTTTTTTCATACAAAACTTCAGATTTCATAA
AATTAAAAAATATTATTCGGGCAAAATTTGAAAAGAGGACATTTGAACAA
AGACTCTAAGAGGAGAGGTAATAAAACAGTTTAAATAATAATGAAACATA
AGAACATCTACGCTAAATAAGTACACCCATTAACTCAATGTCGATCAAAA
AATAGAATAACAATGGTCAAAGAAAGGGCATTTATAGAAGACGTAGACAA
TAATACTGTAATTTTTGCAACAAAAATCCCAACCATAGTAATACGAGATA
AAAAAGCAACTAAGCCCAATAAAAATTTTTAAGCCAATCCAAATTTAAGA
TATACTTGTTACTAATTTCTTCAGTGTCTCTTTATGTAACCCTAGTTACT
AAAAACCTGCAACTGCCTGAATTCCAATAAAAGATTTTGTCCCTAACTAT
GTAGTTAAATATGTCGAATATACATACAAATTGAAAAAGAATAATCCATA
ATATAAATTCTTTGTAGTCATGTCAATTTTTACGGAGTTCTCGGAAGTAA
CAAAGGATCTATATCTTAGCTCAGCATTTGCTATTAAAGATGAAGTTCTC
AAAGAGCATGACATTTATTTAGTTATTAATGCAACCAAAGAGCTTCCACT
TTGGCCACCCTCTGGTCCTCCTGTTTTCGATGTCATTCGAGTTCCACTTG
TGGACAGTAGTATACAAGATGCATATAAGTACTTTGAGGTGAGTAATGAT
TTAATTTGTTTTATATAATCTAACTGATAAAAAATATAATAATTATTTAC
TGTTTATTATCATGATAGTAAATAATATGTTCTTAAATAAGGTCAATATC
TATTTTTTATGATTATCGTCAAATAAAAATTTCCTCCTATACAAAAAAAA
ATGAAGCTTAAATGTGAAAACTTTCTAAAAATTAATTTTAACTTAATATT
ACTTTTATAAGATCAAAATGTATTTTGTCAAATTTGTCAAAAAAGCCCAT
TACTCCCCTTCCCAAAGAAAAATCCGGGWCATGATCTCCCCCTCCCCCCC
CCCCCCCCCAAAAAAAAAAACCATACATACAAATGGAAACGCCCTTGATG
ACAGCACCATTATATAGTTTTCTTTTCCACTTTTAAACATTTTAAATTAC
AGAAAATCTTGATTTTGAAAAGTGAATTATTTTAGGCTTTTAGATTATTA
TTTGTAGTGTTTTATAAATAAATTATATTTTTTGACACGTCATGACGTAT
ATATGTCCTTTAAATATGAAAAAAACCTTTACATATTTATTTATTTTTAG
AAATAAATATTCTTTCTTTATTTTACAATAGATTTTTATGATTTTACATT
TTTCTTTTTAAAACTTTTATGGATTTTGGTATTTCTTAACTGACATTTTA
TTCAGTCAATTATGATTATTAACCATTCGTCCTTCATCAAACCGGATACT
CCATTAATTTATGAAAAAATAATCAATCCGGGGAAAGGAAATGTTAGAAA
CCATAGATAAAAGTAACTTAATCCTCTGTTAGTTCCCTTTTTTTTTCTAA
CACAAGTACGTTCCTGAGAGGATTAGCTACCTCCAACATTAAAAGGAATA
TTTCTGTATTACAAAACTTTATTAGTACTTGTTACAGCTGATACTACATG
TCAGATTCAAATTGAGTACAATTTTACAATTATATTTAATACCTTTGAAT
TCATCATTTAAAGTAGAAGTTTGAGAAAACATTGAACATTGTCAACTTAT
TTTCTTTTAATCAGTGTTCTGAACGTTGAATTCTTATTATGTTTTGTTAA
AGTGTTAACACTTCTATATAGTTATTGAATAATAATTACATAGTTTGGAG
AATTAGACAGGATTGTTCAACTACCAGCTGATTTTGGACCTACTTTCTGT
TGATTTGGGTATGAAATGTTGCGTGATTCAATGAAGGAAACAACATCTCA
AGTAAATAAATAATAAAAACGTCTAAAAAAAAGTAATTTGAAATCTCAAT
ATTTAATAAAGAGTGACATCTATTTTTAATGTCGGCCATTTTGGGAGTAT
AAACAAACATGTTCAAAAAAACAAAAAAACTTTTTTTTCATTAATATTCA
TTCAAAAACTAACTATTGGCAGTCATAATGGATCAATAAATAAAAGGGCT
TTCGTTAACAGTTTATCAAAATGTATCCCTTCTATGGGTAATTTTATACA
ATATCAGATCCTAATGGATATTCAAAATATGTTATTTTATCGTTATACAA
TCTTATCATCATATTTTAGACAATCAATTAACAATTAAAATAGAACAAAA
AGATATTTTTGCCTATAATTATCCTACTTTTATTTACCGTTATTACTCAA
AAGAAAAAAATATATAAATCTAGTCCTTCATAAGGATTTTTTAGTACATA
TTACTTCGATCGAATTGAAATATTAGTTTTTATCATCGACATTAAGTAGC
ATTCAATGAAGGTGTTGAGTCATTTTTTATTCTTAAAGCCATTTTCACAA
AATTTCAACAAGCTTGATTGGAAATTCTGTAATTGAAAACTTTATATAAA
AAGTGTTTTAATAAGTCATAAACTCATAGAGCACCATCCCAAACAATTGG
GCACGGGAAGAATAAGTTAAATTAAGATTATACAGAAGGTAAAACAAAAA
TATTATACAAAAAAGGTATTAAAAATATATTTTGGTCAATTTGATAGATA
ACCACCCCCAGTAATTAACGCAGGGTAATCTTATAAAGTAATCTTACATA
TTACTTAGTAAAGAAAGATCATATTTTCTTGTTGAAAAAAATAATTATCA
TTATGAAAGTTTGTAGATAATATGTGGGCAATCATCATACCAACAGGCTA
GAAGGATTTTTCTTAAAATTGAGTGTGGATTACATTTTTATTCTTCAACG
AATGTTCGTCAATTTCTATTAACAATTATTATTATCAACTCGTTTTTCAG
GACTAACAAATTGTATTTAAATTATCAAAAATTCATAGCTACAATAAATA
AGTAGAAATTGATATATTTCATTTGAAAGAGGTTATATTGGGACCAGTAG
AAATCTCATAAATCAAATAATAGTTTTTAATTTAGGTAAAATTATTCATT
TTCTTAATTTATCTACAAATTTGACTTTAAGAAACTATAATTCACTCAAA
TATTCCCATAAAATATTGGGCTATATGTATATATGAAGTAAAAAAAATAT
ATTGGGATTTTCTTTTTTCCTTGATTTTTGTTGAAGATTGTCTATATGTT
GACGAATTACGTCTAAAATAAATATTGGCAATGAATCAGGAAGGTCACAA
TTACATATTTGTCATTTGTAATAGTAATATTATTTTTCAAAGGAATGCAG
TACTCAAGTACTACATACTCATTGACGTCACTGATTCATTGATTTGAAAA
AATGCATGACATCATCTCTTAAAAAATGTATGAAGGAACTAAGTAAACAA
TTTTATTATTTATATATCATAGGATGTATCCAATTTGATCAAAAAACACT
CAGAGGATTCTAAAAAGACATTAATTCATTGTGCTGCTGGGGTGAGTCGT
TCTGCATGCCTAGCGGTTGCCTATCTCATGCGCCATCACAACATGCCCTT
AGAAGAAGCTTTGACAAAGTTAAAAATGGTACGACCAGCAGTGAAGCCAA
ACAATGGATTTGTACATCAGTTGACTCGATGGYAAGATGAATGTAATAAA
CTGAGAGCTGGAGATGAGAGGATTGAACATTAAGCCTTTTTATTATTATA
GGCTATTAATATTTTATTATTTAATTTACAACATCATTCCAAAACTAGGT
TCAAGGAAAATTAACTCACTTCATTGAGCATGTTCTTTGAGGAATTAATT
TTATATATGTAAATAAATATATATTTTTGAATACAAAATGATTATTATTT
ATATAGGAA

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