EMLSAT00000001976, EMLSAT00000001976-697823 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000001976
Unique Name	EMLSAT00000001976-697823
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s1350	supercontig	LSalAtl2s1350:32996..37917 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000001976 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000001976	EMLSAG00000001976-684742	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000008724	EMLSAE00000008724-717652	Lepeophtheirus salmonis	exon
EMLSAE00000008725	EMLSAE00000008725-717653	Lepeophtheirus salmonis	exon
EMLSAE00000008726	EMLSAE00000008726-717654	Lepeophtheirus salmonis	exon
EMLSAE00000008727	EMLSAE00000008727-717655	Lepeophtheirus salmonis	exon
EMLSAE00000008728	EMLSAE00000008728-717656	Lepeophtheirus salmonis	exon
EMLSAE00000008729	EMLSAE00000008729-717657	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto770090	auto770090	Lepeophtheirus salmonis	polypeptide
EMLSAP00000001976	EMLSAP00000001976	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s1350:32996..37917+

protein sequence of EMLSAP00000001976

>EMLSAP00000001976 ID=EMLSAP00000001976|Name=EMLSAP00000001976|organism=Lepeophtheirus salmonis|type=polypeptide|length=300bp
MSTPRFLVANNKATAARASLQWLRGSHADITAELNEIEAMNILALKSKFK
IKELFKMTYMKPLFVSMGLMFFQQFSGINAVLFYSVSIFESAGSSIDSNL
ATIILGIVNICATIFSNVLIDRLGRKILLYISLIGMIGSLGVFGAYFYMR
NSEILQLSGIIPLVALVVYIISFSVGFGPIPWLMMGEIFPARIRGPAASL
STAFNWTCTFVVTKTFMDLQIVLGQSGVFWLFAGILIISCFFVIFFVPET
RGKTLEDIERLYIERRMSIIMDGGDAPPPIQSYRRVSSIANLKSTPSQFL

mRNA from alignment at LSalAtl2s1350:32996..37917+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000001976-697823 ID=EMLSAT00000001976-697823|Name=EMLSAT00000001976|organism=Lepeophtheirus salmonis|type=mRNA|length=4922bp|location=Sequence derived from alignment at LSalAtl2s1350:32996..37917+ (Lepeophtheirus salmonis)
TGAGGGAGTTAAGTCAATGTTTATATAGTTAGTACACAACTTTATTTCAA
AATAAAGTTCCGCGCAAATTCATTCAGTTTAAATACATATTTCTCTTTAT
ACGAAGTTCACTCCAATACCTACTTATAAGACTTGAAAAGTGTCTTTTAA
ACAAATTCAAATTCTAATAATTGGACCATGTTTCATTCAGATACACATAT
TGAGTTAACTCAGCCTTATCGACCTCCCCCTGAAGGCGGTAAAACCTTTA
CTCGGTCACAAATACAAGCAAGTATTGCCGTAAGCATGGGTTCAATGATT
GTAGGCTATTCATCTGCTTGGTCTTCTCCTGCTATTGCAAGTCTTATGGA
ACCTGGTAGAGAAATTAAAGTAAGATGATTTGAGTAATAACATACATTTA
TAATTGACAATAATAGTGAAAATAAGGAATTTTAATAGAATCATAATAAG
TTGAAGTAAGTCAAATATATAGGGAAGTCACAAAATCTACATTACAATAG
AATAGTACAATGTCTATTTTTTAAATTTTAATCTCAAAACTCAATTTTAG
TAACAGTTGCAATCGTTTCCGGCTACGGGAGAAGTTTTTTTTTTGTGTTA
AATATAATATTAACTTAACATTAAATATCATTGAATTGAATTAATATTAG
GATTGCATTAAGGAACAACACTTTTGAGCTTCATATCAAGCTAGAGTGTA
AAGACTTAAACATAATATATATAATTGTGTAATCTTTTATTGTGATAAAT
GATTAAAAAATATAACCAATTGATTAATTTAAATTTCACTACTACATATA
AATTATAAATATAATCAAGTAATGGAACATTACAATATGTTATAGAAACT
GAATTATACCTACAGTCTTAGGATAATCACTAGATTTGTTTAATTTTATA
AAGGTTCCTTTCCTCTGCAATATATTTACAATTTACACTGTTATCCAACT
AAAATATAAATAAAGTAAATATATATTTAATTCTCTGGTACTTCCCTTTA
AATTTTCTCGGGGGATTAATATGCCAACTTTAGAAGGTATATATTTGCAT
TATACAACTTTATTTGGCCATCATAGTTGTTACATACACCAGTGTATCAA
TTGAATAATGTTATATTCTTATTTGTTACATTATATTTTCCCGCCAGTAT
TTAAAAATAAAAGAAACAGAAAAATAAGGTGGTACCTCTCAAAATCTGAA
GAATGTTTGGGAGGATAATGTTATATTTAGATCAGCTGCAAGTAGTTGTG
AGGGTAAGGAAATAATCACACATCCCATTCCTTACATAGTTAGGACATAT
AGGTTGGAATTACTCCAATCTCGATGCTTAATTCTACTCTAAGTTCCCCT
AAGACTTACACTTATAATCAGTGCTCGAGTAGTAGAGGGATGGGGGCGGG
GGACAATGAAAATGGTCTAAAATAATCCCCTCAATGAAATAAACAACAAT
TCATTATCTTATTTATTATTAATAATTATAATATGGTGGTGTGGAATTTC
CTGTGAAAGGTTATCTTTTCTTTTAAATCTTTGACCTATATTCATTTATG
GTCACATATGGAATTAAAATTTAAYTTTAATCAWTTTTATTTCAAAATTT
TCCCGGAMCCGCCAATAAACATTTCTATTTACCTTTTTAACATGAACAAT
TAATCGTTATTTTTTTGTATAAAAGGCTCAGAANNNNNNNNNNNNNNNNN
NNNNNNNNNNNGAACTAAAGACTAGGGATTAATAAATATGAATTTATAGT
TTCATTCATATTTTTTTGACATACCTATTTCATTTATATTAAGCAATGCT
ACTTGAAATATAATTAGTAAAACTCTAAATGAAAATATATGATATAAAAA
TGTATTGTTAATATTTTTTTAACATTAAAAGGATTTTTAGAAAAATATTT
TTTCCATGACAATATGATCAATTATAATTCTTTTATTGCATGGATAGTCA
TCAATGTTGGAATAACATAATATTGTAATTCTTGAAATAGTTTATATTCC
CTTGTAGAAATATTGTATAATTTTAAATCATATTTATGAAAGGTAACATC
CAATGAAGCCTCATGGATTGGTAGTTTAATGCCACTGGCTGSTTTWATAG
GCGGTTTTATTGGAGGATCTCTTCTGGAAGCATTAGGGAGAAAAAAGACA
ATTTTATCGACGGCCATTCCGTTCATAGTTGCAGGTCTTATTGTATCATT
TGCTCAAGATGTATACATGATATATGCTGGGCGAGCAATAACAGGTTTTT
GCATAGGTCCATAGCCAATTTTCATAACATATGGGATATTATTTTGTGAT
ATAATTCTATTTCTAGGTATCATATCTTTGTCTTTGCCCGTGTATTTGGC
TGAAACAATAAGTCCGGAAGTTCGAGGAACATTGGGACTTTTACCCACAT
CCATAGGTAATGCTGGGGTCATGTTGTGCTACATCTTTGGATTTTGGCTG
GATTGGTCCTACCTATCCCTTATTGGAGCTATTATTCCATTACCATTCCT
CTTCATGGTCTGTACAATTCCGGAAACTCCTCGGTATGTATTAATTTGTT
AATTATCGATATATTTGCTCCATAACCTCTCTATGTCAACTCCAAGGTTT
CTAGTTGCAAACAACAAAGCAACTGCAGCTCGAGCGTCTCTTCAATGGCT
CCGTGGTTCACATGCAGATATAACTGCAGAGTTAAACGAAATAGAGGCTA
TGAATATATTGGCCCTCAAATCAAAGTTTAAAATCAAGGAACTTTTTAAA
ATGACGTACATGAAACCTCTTTTTGTATCCATGGGTCTTATGTTTTTTCA
ACAGTTTAGTGGAATTAACGCTGTTCTATTTTATTCTGTGTCCATTTTTG
AATCTGCTGGTTCTTCAATTGACTCAAATTTAGCCACTATCATTTTAGGA
ATAGTGAATATTTGTGCAACGATCTTTTCAAACGTGCTCATTGATCGATT
GGGGAGAAAGATCCTTCTGTACATTTCTCTCATTGGTAAATTATATATTC
AATGAATTTACTACCAAATAATTAAATACAAAAAGATCAACTTAACCCAA
CAAAAATATTTCTTATGAAAAAAAAGTTTGTTTTTTCTCAAAAATGTTTT
TATTACTGACACACCAAAAAGGATTTATTTTTATAATCTAATTGAATGCT
TTTTTAACAAGATAAAAGTTTGTTTGTTACCTTCCTTATACATATCTCCA
TTCGAGGACATATGTAGTCAAATACTTTTTTTNNNNNAAGATAAAAGTTT
GTTTRKTRCMTTMCTTATAMATATCTMCATTYGAGGRCATATGTAGTYAA
AYRSTTTTTTTTTAAATTAGGAGATGATGAAAAACAAACACGACACACGT
CAAATTATGCAATTAAACATGTTTTATAATGATTTTGATACATACATTAA
TAAATGTTTTACAGACAACAGACATCTCTTTTATCATCATTTTGATACAT
TTTCGGCATGTTTGATATGATTTAGAACAAGTAATTAGAGACGTATCACT
CATTTATGTTGTAACTATAATCAAATTAACGAGGTTTGACAACAGAAAAG
TTCGCCCAAAGTGCATTATAATGTCGTTGTAAATGTATTTACATTTTCAA
TATTTGTTCTTATAGGGATGATTGGAAGTTTAGGCGTTTTTGGAGCCTAT
TTTTACATGAGGAACTCTGAGATTCTTCAACTTAGTGGTATTATTCCTCT
TGTTGCACTTGTTGTGTACATTATTTCATTTTCTGTTGGGTTTGGCCCCA
TTCCATGGCTTATGATGGGTGAAATCTTTCCAGCAAGGTACGACCAAAAC
GAGAAAAATTACTCACCAAAATATTTTAATATTTAATCCCATGATTCTAG
GATTCGAGGACCTGCAGCGTCCCTATCTACAGCTTTTAATTGGACTTGTA
CCTTTGTAGTTACAAAAACGTTCATGGATCTGCAGGTATTCATGTATTTA
AAGTAGGGACTGATTGAGTATTGATTTTAAGTGTTTGATTACCCATTCTT
GAAGGAGAAACCCAATTTAAGTTTTCAAACAAAATCTTACTCTGGTAACT
CTTTAATTTTACTAATAACCATAGTACAATAGCTCATTCTTAGTAGAACA
AAATACGTTATATTTGTGATATATTGTTAAAACAATTAAAAGTGATTCCA
CAATCTACATGTCTTATATTAAGTTTGATAGAGAAGATATAACTTTCAAA
CATAATTGCTCTGATATTATTAATTTATCGATAAATTTTGACCATTTACC
AGTTAATATAATCAAACTGTCTATAATATAATCGGTTGAGATATGAACAA
GTCGCCTCTTCGCCTATTCATAATTCATATGCACACTAATTATTACTTTT
TTCTCTTTTCCATCAGATTGTACTAGGTCAATCCGGAGTCTTTTGGCTCT
TTGCTGGGATTCTCATCATTAGTTGTTTCTTTGTCATATTTTTTGTTCCT
GAGACACGTGGAAAAACTTTGGAAGACATTGAAAGGCTATATATTGAGCG
TCGCATGTCTATCATTATGGATGGTGGGGATGCTCCACCACCAATTCAGT
CATATAGAAGAGTCTCTAGTATCGCTAATTTGAAATCAACGCCCTCTCAA
TTTTTATAAGCTAATAGGATGCATTGCTTGTACCTTTTTCAATAAATACA
TATACATATTCCGCTATTAAAATGTAACCTTCTCTCTACTTTTTCTACCT
TTGTAAACCAAAGACGTGAGCTTAATTTAGTAATCCTATATGTTAATGAT
ATTTTTGATATGAAATTATTAACTTTTTTTTATGTAGATTGCTCTAAATT
AATAATACAAATTATGTTATTCATCCATGAATAAAAGTATACATATTAAT
CTATAACAGCTACGATAAAGTTTAATATTTATTTCTCCATGGTACACCAA
TTCTTCCTGATAACACATAAAG

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