EMLSAT00000001980, EMLSAT00000001980-697827 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000001980
Unique Name	EMLSAT00000001980-697827
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s1352	supercontig	LSalAtl2s1352:65608..70588 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000001980 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000001980	EMLSAG00000001980-684746	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000008741	EMLSAE00000008741-717669	Lepeophtheirus salmonis	exon
EMLSAE00000008742	EMLSAE00000008742-717670	Lepeophtheirus salmonis	exon
EMLSAE00000008743	EMLSAE00000008743-717671	Lepeophtheirus salmonis	exon
EMLSAE00000008744	EMLSAE00000008744-717672	Lepeophtheirus salmonis	exon
EMLSAE00000008745	EMLSAE00000008745-717673	Lepeophtheirus salmonis	exon
EMLSAE00000008746	EMLSAE00000008746-717674	Lepeophtheirus salmonis	exon
EMLSAE00000008747	EMLSAE00000008747-717675	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto771233	auto771233	Lepeophtheirus salmonis	polypeptide
EMLSAP00000001980	EMLSAP00000001980	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s1352:65608..70588+

protein sequence of EMLSAP00000001980

>EMLSAP00000001980 ID=EMLSAP00000001980|Name=EMLSAP00000001980|organism=Lepeophtheirus salmonis|type=polypeptide|length=559bp
MYHVRMYSIFYLLCHILVYLVKPGESLFNRLETEYDKIINVFHPKYFMQL
QNIKDNNNLPVPEMVQEYGYEAEIYKVITDDGYINTLHRLKSPKNSSTLA
PILVQHGLFGTSADFVMGRPDKSIGYILADIGYDVWLGNSRGNIYSRNHV
NLTVNDDDYWKFSFDEMGKYDLPAAISLIKNVSHSDQIYYIGHSMGTVMF
WIAMEDNPILNNHIKLMIAMGPVAKVTHVVSPIRHLAPFSKDFKFLMDLL
GINEISPSNAILNWFDKWVCDLTMIQKEVCENLLFLMSGYDFGQMNMTLL
PIILGHEPGGTSTRTLIHFAQEINDDKFQKFDHGKAKNVIFYNSTVPPQY
DVKKSVKVPVALLWSDNDWLAXPSTSMVVLTSLGPPEEGVRHVESNTKVF
FNSRGLGLGTLYISESRVSWVGEGNGFSLEYPHIALHAVSKDLSAFPEEC
LYLMIDVRLMESEDPTPASSVDGEDDNDENDDQSSSGMTEVRFVPQDKSK
LDTIFRVLSQCQSLHPDPEDVSSGDELNGNDEDNEDNEDFINEGGVYDDA
EEDEPMDER

mRNA from alignment at LSalAtl2s1352:65608..70588+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000001980-697827 ID=EMLSAT00000001980-697827|Name=EMLSAT00000001980|organism=Lepeophtheirus salmonis|type=mRNA|length=4981bp|location=Sequence derived from alignment at LSalAtl2s1352:65608..70588+ (Lepeophtheirus salmonis)
GGAATCCTTCAATCGGACTCTGGACGTTGCAAGGATGAGAGAAAATGTTG
TGCCTACTTTATTCAAAGCATTCCTGCCTCGCCTTCACGAAGAAGTTGCA
AAAACTCTTTTGAAAACGCAAGTCTCCTACAAGGAGGTCCTCCTCACCTT
CTAAAAAGGCCAAACCATCTCCTGGACTCGAGATAGATCCTTCCCACTTT
GAGGCTACGGAAAATGTGCAATTGGATCATCCCTATTCTCTCCCATCAGC
TCAAGTCAAGAAGCTCCAATGGCAAACGAATATGATTTCCGAGCTTGCAG
ACCGTTCTAAAAAATACAGATGTCAACGGAATACGATCTCCAAGAAGTTA
GGAAACTTGGTTGACGTTCTAAAAGACCTGAGGTCCAAGAGCATGTTATC
AGAAGAGCCTTTATCCATTCTTGATACAATGTCTGACGTTCCTAAAAACC
TTTTACAAAGGATGCAAATCGGAAGTGGTATAAAGGGAAGTCGCAGTAGC
TACTCACCTGAGCTTCGAGCATTTCCTTTAACATCGTCATTCTACTCGAC
AAAAGCATATAGTTATGTATGAAAGACCATGGACTTATGCCTACCTAGTC
TCAGTACCATTCGAAACTGGTATTCGAATGTGGATAGTGATCCGGGTTTT
ACTCAATCTTCCTTTGATATTCTTAAATCGAAGGCTAATAAAGCTCCCGA
ATCTAAAGAAGAAATTTTTGTCAAGTTGACATTGGGCGAAATGTCAGTTT
TCAAAAAAAATCAATGGGATGGGAAAAGATTTGGTGGATATGTTAGATAA
CCATATCCTTAAATTACAAAAACATATTATCTTGACATATTCTAAAATTA
GGCTTCATCATGAAGACAATCTCATCTCTGAGAATTTTAAAAAAGAATAT
AGACGAAAATCTCATTCGAAACAGATTCTTTTTAAGAATCAATGATTCAA
AGGTATTAAATATAATGTGTATATTATATTCTATATAAAATATATATATA
GAAGTCTCCTATATATCTTCATATACAAATTGTAGGTACCTAAAATGGCT
GCCGACAGCTCACGGTTGACTCTCCTTTTATTTGCCTATTGGGTATCCAG
TTATTAATTATATAAGTAGGTGGTATATCAATTCAGTATACAACATAAGC
GAGCAAAAAAAACAACATTAATCACGACGAAAAACCAGCTGATAAAATAT
TATCTGGTTAAAAATTAGTAAATAGTTGAGGCAACAACTAAAATCGAAGA
CATGCATTACATATAATTAGAATTATATAGGAACGAAAAAAACAGGAGCA
CTAAACGAAAGTATCGTAAAAATGATGTAAAAGTAAACATATAGAAATAA
CATAAAAGAAAAGGATGTTGCCCCAGAGACGAAATTTCTATTTAAAAGTT
TTAATGGAGTCATTCCAAAAAGATAGAACAATCCCCCAAGAGAAGTGATT
ACTTCATAACCTTGCTACGATGTTTTTTTGTATTGCTTGATAATAAATTC
AAGAGTTTTATTGTGTCTTTTTGAGGGAGAAGGAAAATATTTAATTATAT
CACTGGGATATTCCCGTCCGGATTCCGGGTAATTTGATTATTAAACAATT
TGATCTTTAAGGATTTGATTAAGATACAATTTAATTGCAAGCAATTTGAT
AATCTACAACAGGGATGTCCAACTTGTGGATCSCMSGCCGCMTTGCGGCC
YGCCTAATTTGTAGGTTTGGCCCGCTACTCTTTCTCACTTCAATTAGTAT
TTTTTAGCAATAATGTCGCAATATCATCAAAACGGGTAGAACGCTCATAA
TACGTACAATGCACCGACCTATATAATAAATAATAAGGATTGAGAATGAC
TAATATAAAGATACGGTATTAACTCTCTACTTTCACCTAGTAACGCAGTG
ATTTTTAACCTTTTGACTTCCATTAACCAATTTCGGAATATCAATAAAAC
CATTCCCTCCCAGAGTTTTTATTCATATATTTAATAACCTTTTTAAATAA
AAGTAAGTTACTTATATGATATTTTTCCTAAATTCCTTTTTATACCAGAC
CTCTTGTAATGATGCGTAGAAATTATATCAAATGTGAAAGAAGGCTGAGA
GAGTGACATGTTATCTTGCACTTTGTACGTTTCTCGTTTATGTCAAGACT
TGAATTTTAGTGCGGAATAAAAAATGTATCATGTAAGAATGTATTCAATC
TTTTATTTACTGTGTCACATTTTGGTTTATTTGGTTAAACCAGGAGAGTC
TTTATTCAATAGACTAGAGACTGAATATGACAAAATTATTAATGTTTTCC
ATCCCAAGTATTTTATGCAACTACAGAATATCAAAGACAATAATAATTTG
CCAGTTGTAAGTATTGAATCACAAAAATGATGAAGATAAGCATTAATTGA
CGTAACCATTCCATCTTATGTATGAATAATTAACTATTCTAGCCTGAAAT
GGTACAGGAATATGGATATGAAGCAGAAATATATAAAGTGATCACAGATG
ATGGATACATTAACACACTTCATAGACTAAAATCTCCAAAAAACTCATCA
ACCTTAGCACCAATCTTGGTTCAACATGGTTTATTTGGAACTTCTGCTGA
TTTTGTGATGGGTAGGCCCGATAAAAGCATTGGTTATATCCTAGCAGATA
TCGGATATGACGTTTGGTTAGGGAATAGCAGAGGAAATATTTATTCGAGA
AATCATGTCAATTTAACCGTTAACGACGATGACTATTGGAAATTTAGGTA
AATTATGTAATAATGCATTACAAGGACAAAATTTGATTTTTGTAACCGTC
GTTAGTTTTGATGAAATGGGGAAATATGACTTACCAGCGGCAATTTCCTT
AATAAAGAACGTTAGTCACAGTGATCAAATATATTACATAGGGCATTCTA
TGGGAACAGTCATGTTTTGGATCGCCATGGAAGATAATCCTATTTTAAAC
AATCATATAAAACTAATGATCGCCATGGGCCCTGTTGCCAAAGTGACTCA
TGTAGTCAGCCCGATAAGACATTTGGCACCTTTTTCAAAAGATTTTAAGG
TATGCTTATTAATTTATGCATAGAAGTAACTTGATATAAATTTAATTGCA
GTTCCTGATGGATCTTTTGGGAATCAACGAAATTTCCCCAAGCAATGCAA
TCTTAAATTGGTTCGACAAATGGGTATGTGACTTAACAATGATTCAAAAG
GAGGTCTGTGAGAATCTTCTTTTTCTCATGTCAGGCTATGACTTTGGTCA
AATGAACATGGTTTGTTACTCAGAGAATGAGTTCTTCTTGATTCTAAGCT
CTTGAATTCAAATTTCAGACTCTATTGCCCATTATTCTTGGTCATGAACC
AGGAGGTACTTCTACTCGTACACTTATACACTTTGCCCAAGAAATAAACG
ATGATAAGTTTCAAAAGTTTGATCATGGAAAAGCAAAGAATGTCATTTTT
TACAATAGTACAGTACCCCCTCAGTATGATGTTAAAAAAAGTGTGAAAGT
CCCCGTGGCATTATTATGGAGTGATAATGACTGGTTAGCTGRTCCGTCGG
TATGAATTTATTTTTTTAATTAAAATAATTATTACATTTAATTATATGGT
ACTTTTTTCTAGGATGTTTACTGGCTCAAAGAACAACTGAGTAATGTTTT
AATCAAGTTTTACGAAGTTCCTCTTAAAAAATTTAACCATATTGATTTTC
TTTGGGGCTTGGATGCAGATAAATTAGTATATCCTGTTATTTTGGATCTA
TTGGAAAAAATGAAGTAATTGTAACTGATACTTTGAATTAAAAGACTTAT
TGGAGTCCTTTGGTTTAAATAATTAATATGAAACTAGCTAATTACCGGTA
ATCATATTCCAAATAATGTTCTGGTCTACCTGCTAATTCAACTTATATTA
ATTATTTAAACAATCTTATTGATCGCTTACAATTAGTAGTATACATTTTA
CTCAATATATTAATTATTATATGAATAATAAATAATTTATGATTAGGTAA
TTAACTTACCTAATTTGTTTAATAATTATAAATTATAATCATAAGTACAA
AGTCAAATAAATATTAGATTCACTGATAGTTGTATGAGGTTGTGTAGGTG
GATATTTTAAATTATTTGTATGACGTCATACTACTGTATAAACAATAAAT
AATAATAATATGTTGGAGACTTTGAGTGGATTTAAGAAAACACAGTTAAA
ATATCACACAGTTACTGTTAGACTTCCATGGTTGTACTAACGTCCCTAGG
CCCTCCTGAGGAGGGAGTTCGCCATGTTGAGTCTAACACTAAAGTATTTT
TTAATTCCCGTGGCTTAGGCTTAGGAACTCTATATATTTCCGAGTCTCGC
GTTTCTTGGGTAGGGGAAGGAAATGGATTTTCTCTGGAATATCCACACAT
TGCTTTGCATGCGGTTTCCAAAGACTTGTCTGCATTTCCAGAGGAGTGCT
TATACCTTATGATCGATGTACGCCTTATGGAGAGTGAGGACCCAACCCCT
GCTTCCAGTGTTGATGGAGAAGATGACAACGACGAGAATGATGACCAATC
CTCCTCAGGTTTGCAATTCTTTCCTCGCTCAATGAAAACAACATCTACGA
TCCTTGTATTCTCTATTTCACTCTAGGTATGACTGAAGTCCGTTTCGTGC
CGCAAGATAAATCCAAACTGGACACCATTTTTAGAGTGTTAAGTCAATGC
CAGTCCCTTCATCCAGATCCAGAGGATGTTTCATCAGGAGATGAACTCAA
CGGTAATGACGAGGACAACGAAGATAACGAAGACTTTATTAATGAAGGTG
GAGTATATGATGATGCGGAAGAAGATGAGCCCATGGACGAAAGATAATCC
TTCTTCAAACTCTGTTCTTTATCACCAAAATATTCATTTGATATTCACTT
ACTCCAAATTTTATATTGTTCCACTAAGAAAATCCCGATGATGAGGCATG
TTCACATCATAAATATAAAAATTGAAACTCG

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