EMLSAT00000002198, EMLSAT00000002198-698045 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000002198
Unique Name	EMLSAT00000002198-698045
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s1407	supercontig	LSalAtl2s1407:52389..57831 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000002198 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000002198	EMLSAG00000002198-684964	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000009697	EMLSAE00000009697-718625	Lepeophtheirus salmonis	exon
EMLSAE00000009698	EMLSAE00000009698-718626	Lepeophtheirus salmonis	exon
EMLSAE00000009699	EMLSAE00000009699-718627	Lepeophtheirus salmonis	exon
EMLSAE00000009700	EMLSAE00000009700-718628	Lepeophtheirus salmonis	exon
EMLSAE00000009701	EMLSAE00000009701-718629	Lepeophtheirus salmonis	exon
EMLSAE00000009702	EMLSAE00000009702-718630	Lepeophtheirus salmonis	exon
EMLSAE00000009703	EMLSAE00000009703-718631	Lepeophtheirus salmonis	exon
EMLSAE00000009704	EMLSAE00000009704-718632	Lepeophtheirus salmonis	exon
EMLSAE00000009705	EMLSAE00000009705-718633	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto770738	auto770738	Lepeophtheirus salmonis	polypeptide
EMLSAP00000002198	EMLSAP00000002198	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s1407:52389..57831+

protein sequence of EMLSAP00000002198

>EMLSAP00000002198 ID=EMLSAP00000002198|Name=EMLSAP00000002198|organism=Lepeophtheirus salmonis|type=polypeptide|length=645bp
MTTAARPTFDTARGGSGARERDLSALSKQYSSRDLPSHTSLKSRERGQGT
VDDLVGKDFKRELEEREGRISEKRSLSSKGHLEYASKKSRTEAIAPPANI
DADDPLEASDNSDSSDDEDDDTALLMAELNKIKKEKAVEEAKKEEQHSAE
VERIRMENILSGNPLLKNKFSETSEKMDLKVKKRWDDDVVFKNCSRAQPD
KEKKNFINDSLRNEFHRKFMEKYINQVLNLERGKLLTRQGFVTWKSPNPY
TYVLSNNLHITNKDFGTLSIVLMPGLRIIGVFFRYPCEGRNPEVLYGEDS
TKKTRTYPTIEIVGYKGPMTVVASCVEDHAPYRVHPNKLIDRNNASKQSV
CSRNVDVNTMTCSFENIGIQCIKRHEIPDSLEERRSIKVDPFNQKFNHTH
SSVNPYILRLCFQAFLKRESSYIPLCPVVSNIIADSRAHAIPKIHDISDD
WSYTDGGKRIIILTNKVYKDDIEVHFTNESEGRRESWHAKGVSLSVHKQH
AISFLTPPYKDEELTHPVTVYIYLYKSGLRQRSEPLKFQFIPPHNTNDTK
KKYVYQSIGHSXSSEAMLGSQYISTNNQEFSIVSSKDSLNLSDIVDLELS
YIVDSNLHLDYEEVPDLLSSSENAQHGMSNSYGNIDNMFQFFDGI

mRNA from alignment at LSalAtl2s1407:52389..57831+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000002198-698045 ID=EMLSAT00000002198-698045|Name=EMLSAT00000002198|organism=Lepeophtheirus salmonis|type=mRNA|length=5443bp|location=Sequence derived from alignment at LSalAtl2s1407:52389..57831+ (Lepeophtheirus salmonis)
TGAAAATGCTAGCATGTTAATGGCAGAGAGTTTTCATTTGGTGTGCCTGT
TTAGTGTTATTTTCTTTCCCTTTTTCTCTCTCTCTCTCTCTTCTTTATTT
ATTTATTAGAGATTAAGTRTCAGTTTTTAATACTGCATAGTTTTGTTTTT
TCGTTAAAGGTTCTTACCGATTCGAATTAGGCTTTTATCACACTCGTTAC
TCCTGACTTAGTTCGATCAACATGACGACTGCAGCCAGACCAACCTTTGA
TACCGCTAGGGGTGGCAGTGGAGCCCGTGAGAGGGATCTATCTGCTTTGT
CCAAACAGTACTCTTCCCGAGATTTGTAAGTACTTCCTCCCATAAGACAG
AATAACGAATAAGTGTATACATTTTCAATCCTTAGGCCATCACATACATC
TCTAAAGTCCAGGGAGCGAGGACAAGGAACCGTGGATGATCTCGTAGGAA
AGGATTTCAAGCGGGAATTGGAGGAACGAGAAGGGCGCATCTCAGAAAAA
CGATCCTTGTCGTCCAAGGGACATCTAGAATATGCGTAGGATACTTTTTT
AATACCCCAATTGGGTTAGGGTTCATTCTTTTTACCACCCCTACGTCATA
TTGTATCCTTCCATCTCGAAATTTTGAGACAGCAAAAGTTAAAATACAAT
CTTCAAAACCTTTTCAAATAAGGGAATAACTTTGCGAACCGAAGCAAATT
ATATATAAATGGTCAATTAATGCTAATACCTATAACAGAGACTGTTGAAA
TCAAATTTTCAGATCAATTATTTATTAAATTTGGAAAACAGTATTATTTA
GAATGAATAATGGAGTTTTGAACTTCAATTTTGTACAGTAAATTTTTGAG
TTACGACAATTTGGTTCTCTACCCAGGAGACATTATGTAAAGAGGATTCC
TAATCATGTTACTCCAATGTTTAAATATAAAGTTGTAACCATGAAATGTT
AATCAATTAATAATTATTATGAAAATGCTTCAACCGTTGACTTGAACCAC
TATTAAAACTGTTGTAACAAAAATCATGGCAACTGCCTAATAGATATATA
AATTAGAAAGAGAAATAATTAATTAATAAACACTTAATGATTGCAATTTG
TGGCAAATAGTTCAACATTTTATCTTTACAAATGTCAAGTGACTGAATCA
GTTTATGATCCAGAAGGTTATACTTATGCATAATTGTAAATTTTGTCATM
CCTAACATAATTTCAAGCCTACAATAAGCGTTTCAATCCTCAAAAAGGTC
ATTTCGAAGGCTGATGGCCAAATTGCCGTAAATCACAAATATTAATAGTA
TTGCCTATTTGTTGTCCCAGAAGTCTTAATATTTAATGCCAATGTGTAAA
AACAGAGAAATTTAGACTGTTAAAATGAGTTTATCACATTCATTTTATTA
CTAAAATTGGAAAACACAATTTATTTCCAATCTGAAGCCTGTAAATAAAT
ATTTGAGTTACGAAAATTTGGCTCTCACCCCATGATTTGTTCTAGGTAGA
ATGTGATCAGCAATTAAGGGTAACAAGKTAGCCGATGAACGATTCCTTAC
TCCACCTATCTACACCTACGAAGACCCAGTGTGTTTCCTGGTACCTCCCT
CTTTAATGTTTAAAATTAGCAAATTTTGATTTGTCTATTTCTACAATCCT
CCCGGGTCCCCATAGAAATTGAACCAGTCGATAACTACATGGTTTTCCTG
GAAGTAATTATACTGTCATGATTCCTGATGGATGCAAGAAAGTGACTTGG
TGATTACAAGTTAATGATAAGCGAGCGATACACTCCACCTCTTACGGATC
GACTCCGAGCCCTCCTCCCTCCTGATACTCTACAAGAAACCCAATAACTC
AAAAGAGTCCAAATCCCTCTTCTACTTCATATATAATTCGCTTCGCTCAG
CAAAGTTATTTCCTTATTATTAAAAGGTTGCAATGATTGAATTTCAACTT
TCCGCTTACACTGTCTCCAATTTCGAAATATGACGCGCGGGCAAAATTTG
TAAACACAATGTATTGTTTAAAGGTCATCATTTCAAAAGATTAAATAATA
AGTCCAAGAATTAACTCATTATTTCTCCGATAGTTATTTTATGATATCCG
ATTTTGATACATATGAAAAAACGTAGCCAACGGCATGCCTTAAATAATAT
TTTAAATATTAATTCATTACTAAGTAAATATAGCCAAAACATGAACACGG
AGGCTCAACAATGATATCATATCTATATTTGATTACAATATACAGTGGAT
AMCGCTCAATTCGGTTCTCAAGGAATAGTGACAAATCTGCTCACTATTAA
ATATACCTTTAYTCGGGACAATCATAAATGCCCACTATTAACAAATATCT
GTATTAAACGTTGATACCTTCGCCGACCTTAACTGTAATTGTAACTTTTT
TTGCCTCGTTATGTCTCCTTTCAAATATAGTCCTTCAATTTCTAATTATT
TCGTTGGGACGAAGGAATTTTTGCTACCTTATGTACAATTTGGATTATTA
TAGTTTGTTGATTGAAATAGACGATAGTTTGTCGGAGAATACAACTGCAC
TCTTGATTCAATTTTGGGAAAAATGATTGTAACTTTATTTTGTGTTACAC
ATTTTAATTTGTTTGTTTTTCAGATCCAAAAAGTCTCGAACGGAAGCAAT
AGCACCCCCTGCGAACATCGATGCAGATGATCCCTTAGAAGCTTCCGACA
ATTCCGATTCTTCTGATGACGAGGATGATGATACTGCACTCCTAATGGCG
GAACTCAATAAAATCAAAAAAGAAAAAGCTGTCGAAGAGGCCAAGAAGGT
TTGTATTTCTTTTTATTTTTTCCTCTACAAGAAGCTAAATTCATTTGACA
TTTTTTTCATCATTTAATATGATTTAATTCACTTTTGTATTTGATTTTCA
GGAGGAACAACATAGCGCGGAAGTTGAAAGAATTAGAATGGAAAATATAT
TGAGTGGGAATCCTTTGCTCAAAAACAAATTTTCAGAAACTTCTGAGAAG
ATGGACTTGAAAGTGAAAAAACGCTGGGACGATGATGTTGTCTTCAAAAA
CTGCTCCAGAGCGCAGCCTGACAAAGAAAAAAAGAATTTTATTAATGACT
CACTTCGTAATGAGTTCCATAGGAAATTCATGGAAAAATATATTAAGTAA
TACAATTATTAATGAGTACTTGTCTGTAAAAGGCTGTGTTGGTTCGAATG
TTCTTCTTTTCTGTTTTTTTAAATAATAATAACTTGATTCATTTTCACTA
GATTTATAAATATACTATAAATTGATATGTGAGCAAGCTTGTAAGGATAT
TTTACTCACTGGTACTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAAAGTACT
CAGGTATAAAATTTGTAAAAATTGCCTTGTTTGCTTAATTTCATCCTATG
TGTATAAATTTATGCTTCAAGTATATTAAGAGGAGCCTTTTTGATATTGG
CATCTGTTGACATACAATAAAGGCATCAAATTAGTTGAGTGTATACTTCT
TGTGAGTCAAGTGTTAAATTTAGAGAGAGGAAAATTGCTTACTCGACAGG
GATTTGTAACATGGAAATCCCCAAATCCGTATACTTACGTATTGTCAAAC
AACCTGCACATAACAAACAAAGATTTCGGTACTTTAAGTATAGTTTTAAT
GCCTGGACTGAGAATAATCGGGGTTTTCTTTAGATATCCGTGCGAGGGTC
GTAATCCAGAAGTTTTATATGGTGAGGATAGTACCAAAAAAACCCGTACG
TATCCCACCATAGAAATTGTTGGGTACAAAGGGCCTATGACCGTGGTTGC
TTCTTGTGTTGAAGATCATGCGCCCTACAGAGTACATCCCAACAAACTGA
TTGACCGGAATAATGCTTCGAAACAAAGTGTATGTTCCAGGAATGTTGAT
GTAAATACAATGACCTGTAGCTTTGAAAATATTGGTATTCAATGTATAAA
GCGACATGAGATTCCAGATTCCTTGGAAGAGAGACGGTCGATTAAAGTAG
ATCCCTTTAACCAAAAATTCAATCACACTCATTCATCTGTTAATCCATAT
ATTTTAAGGCTCTGTTTTCAAGTATAGTAGCGATGAAAAGGCAATATTCA
CCTTTCTTTGAAAATGTTTTTTTTTCTTGCGTAGGCCTTTCTGAAACGTG
AATCTTCCTATATTCCCCTATGTCCCGTTGTCTCAAATATTATAGCAGAT
AGTAGAGCGCATGCTATTCCAAAGATCCATGATATATCTGATGACTGGTC
ATATACTGATGGTGGGAAAAGGATTATAATACTTACGAATAAAGTCTACA
AAGATGATATTGAAGTTCACTTTACGAATGAATCGGGTATGATATAATAT
GAATCATCATAATTGCTTTGCATTCTTGTTAAATATAACATTTTGTACCT
AAGTAACTAATAATATATCTTTTTACAGAGGGAAGGAGAGAATCTTGGCA
TGCAAAGGGGGTCTCATTGAGTGTTCATAAGCAACATGCAATATCATTTT
TGACTCCTCCATATAAAGATGAAGAATTAACTCATCCTGTTACTGTATAT
ATATATTTGTATAAATCCGGTCTTCGTCAAAGAAGCGAACCCCTCAAATT
CCAATTTATTCCTCCACACAATACCAATGATACTAAGAAAAAATATGTCT
ATCAGTCTATTGGACATTCAYTCTCTTCAGAGGCAATGCTTGGATCTCAA
TATATTGTACAGCTTCCAAAAAAATCAAAGAAATTTTCCAAGATAAASAT
GAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCCTCAATTCAATGCTCTTTCGCAGAGTACAA
ACAATCAGGAATTTAGTATTGTGTCCTCAAAGGATAGTCTTAATCTATCA
GATATTGGTAGGTTGTTAAARCTTTCTTAATTGTACAATATTAGTTATAA
TTGATTAATATTTGTTTTTCCATTAATAGTGGACTTGGAGTTAAGTTATA
TAGTAGACTCGAACCTTCATTTAGACTATGAAGAAGTTCCAGATTTATTA
TCAAGTTCTGAAAACGCACAACATGGAATGTCGAATAGTTATGGAAATAT
TGACAACATGTTCCAATTTTTTGATGGTATTTGATGTGTTAATAACAATT
ATATGCTAACATAATTTTGAAGCGCGGAATAATCCATTAAGACCCAAAAT
CCGGGGTAATAAGATTTCAATTATATAATTTTTTAAATGGAAATAAAAAC
TTTTCCCGAAATTTTATATAACGTTCTAGGCTATTTTTATATGAAAGTAT
TATTCGTTTAAATTTTTAAAACAAAGCATGGGTATGATTTTCA

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